Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 271 of 438
Found at i:84414694 original size:29 final size:28
Alignment explanation
Indices: 84414626--84414728 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
84414616 TACCTATATG
*
84414626 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATT-ATA
*
84414654 TGGCCCATTTAGGCCCAAATCACATGTATA
1 TGGCCCA-TTAGGCCCAAATCATAT-TATA
*
84414684 TGGCCCATTAGGCCCAAATAATATTTATA
1 TGGCCCATTAGGCCCAAATCATA-TTATA
*
84414713 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
84414729 GTCACATTCA
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
28 7 0.11
29 40 0.61
30 18 0.27
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCATATTATA
Found at i:84418568 original size:30 final size:30
Alignment explanation
Indices: 84418523--84418582 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
84418513 ATTTAATACT
*
84418523 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
84418553 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
84418583 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:84423458 original size:29 final size:29
Alignment explanation
Indices: 84423425--84423498 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
84423415 CCTTCGAGCT
84423425 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
84423454 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84423483 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
84423499 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:84423459 original size:58 final size:58
Alignment explanation
Indices: 84423366--84423498 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
84423356 ATACTCGATT
* * * * *
84423366 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
84423424 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
84423482 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
84423499 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:84426638 original size:29 final size:29
Alignment explanation
Indices: 84426605--84426686 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
84426595 TGACGAGATA
*
84426605 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
84426634 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
84426663 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
84426687 AAAAAAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:84434546 original size:28 final size:29
Alignment explanation
Indices: 84434489--84434569 Score: 146
Period size: 28 Copynumber: 2.8 Consensus size: 29
84434479 TGACGAGATA
*
84434489 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
84434518 GGCACTAAGTGTGCAT-CTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
84434546 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
84434570 AAAAAAATAA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
28 28 0.56
29 22 0.44
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:84447914 original size:40 final size:40
Alignment explanation
Indices: 84447749--84447916 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
84447739 CAATTGAATG
* * ** * ***
84447749 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
* * *
84447789 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGTT
* * * *
84447829 ACATTCGGGCTAAGACCCGAAGGCATTCATGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
*
84447869 CTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGGTT
84447909 ATATCCGG
1 ATATCCGG
84447917 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 4 0.04
40 97 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
Found at i:84451687 original size:40 final size:40
Alignment explanation
Indices: 84451579--84451788 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
84451569 CGGGATTTAA
* * * * *
84451579 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84451619 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84451659 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84451699 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84451739 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84451779 CCGGATATAT
1 CCGGATATAT
84451789 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84459823 original size:30 final size:29
Alignment explanation
Indices: 84459729--84459830 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
84459719 TATAGTGAAT
* * *
84459729 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
84459758 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
84459786 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
84459816 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
84459831 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:84462848 original size:40 final size:39
Alignment explanation
Indices: 84462804--84462907 Score: 163
Period size: 40 Copynumber: 2.6 Consensus size: 39
84462794 CCAGCATGAT
* * *
84462804 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAA
84462844 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAA
84462884 TGCTCTTCGGAACTTAGCCGGATA
1 TGCTCTTCGGAACTTAGCCGGATA
84462908 TAACCACAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 7 0.12
40 53 0.88
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
TGCTCTTCGGAACTTAGCCGGATACATCACTAGCACGAA
Found at i:84462920 original size:40 final size:40
Alignment explanation
Indices: 84462804--84462938 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 40
84462794 CCAGCATGAT
* * * ** * *
84462804 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATAAACCACAAGCACGAA
* * *
84462844 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATAAACCACAAGCACGAA
84462884 TGCTCTTCGGAACTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGTCCGGATA-AACCACAAGCACGAA
*
84462923 TTGC-CTTCGGGACTTA
1 -TGCTCTTCGGAACTTA
84462939 ACCCGGGTAT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 20 0.24
40 65 0.76
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATAAACCACAAGCACGAA
Found at i:84462950 original size:40 final size:40
Alignment explanation
Indices: 84462836--84463024 Score: 123
Period size: 40 Copynumber: 4.7 Consensus size: 40
84462826 ATGCATCACT
* * ** * * *
84462836 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT
1 AGCACAAATGC-CTTCGGGACTTAACCCGGATATAACCACA
* * *
84462876 AGCACGAATGCTCTTCGGAACTT-AGCCGGATATAACCACA
1 AGCACAAATGC-CTTCGGGACTTAACCCGGATATAACCACA
* * * *
84462916 AGCACAATTGCCTTCGGGACTTAACCCGGGTATAACAACTC
1 AGCACAAATGCCTTCGGGACTTAACCCGGATATAACCAC-A
* * ** *
84462957 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT
1 AGCACAAATGCCTTCGGGACTTAACCCGGATATAACCACA
* ** *
84462996 AGCATAAAAACCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGACTTAACCCGG
84463025 GTATCATTCA
Statistics
Matches: 121, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
39 18 0.15
40 102 0.84
41 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGACTTAACCCGGATATAACCACA
Found at i:84465068 original size:49 final size:49
Alignment explanation
Indices: 84465009--84465367 Score: 560
Period size: 49 Copynumber: 7.4 Consensus size: 49
84464999 CCACATATAT
* *
84465009 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
84465058 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
84465107 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
84465156 ATATATATATACTTTCACATTCATCA-ATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
84465204 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84465253 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT-TCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84465301 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84465350 ATATATATACATTTTCAC
1 ATATACATACATTTTCAC
84465368 GAATCTTGAT
Statistics
Matches: 289, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
48 89 0.31
49 200 0.69
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:84465235 original size:97 final size:98
Alignment explanation
Indices: 84465009--84465367 Score: 578
Period size: 97 Copynumber: 3.7 Consensus size: 98
84464999 CCACATATAT
* * * *
84465009 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACACTTTC
*
84465074 ACATTCACCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * * *
84465107 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATATACTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACACTTTC
84465172 ACATTCATCA-ATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
84465204 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACACTTTC
84465269 ACATTCATCACATCGGCCATTAGGCCTT-TCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84465301 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACACTTTC
84465366 AC
66 AC
84465368 GAATCTTGAT
Statistics
Matches: 243, Mismatches: 17, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
97 158 0.65
98 85 0.35
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (98 bp):
ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:84465252 original size:146 final size:146
Alignment explanation
Indices: 84465007--84465367 Score: 562
Period size: 146 Copynumber: 2.5 Consensus size: 146
84464997 TACCACATAT
*
84465007 ATATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
1 ATATATATATAC--TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTT
* *
84465072 TCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATC
64 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATC
84465137 GGCCATTAGGCCTTATCAC
129 GGCCATTAGGCCTT-TCAC
84465156 ATATATATATACTTTCACATTCATCA-ATCGGCCATTAGGCCTTATCACATATACATACATTTTC
1 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
* * * * * *
84465220 GCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATTTTCACATTCATCACATCGG
66 ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGG
84465285 CCATTAGGCCTTTCAC
131 CCATTAGGCCTTTCAC
* * * * *
84465301 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
1 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
84465366 AC
66 AC
84465368 GAATCTTGAT
Statistics
Matches: 196, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
145 27 0.14
146 143 0.73
147 14 0.07
149 12 0.06
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (146 bp):
ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGG
CCATTAGGCCTTTCAC
Found at i:84465337 original size:24 final size:24
Alignment explanation
Indices: 84465262--84465337 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
84465252 CATATATATA
84465262 CATTTTCACATTCATCACATCGGC
1 CATTTTCACATTCATCACATCGGC
** * * ***
84465286 CATTAGGC-CTTTCA-CATATACATA
1 CATT-TTCACATTCATCACAT-CGGC
84465310 CATTTTCACATTCATCACATCGGC
1 CATTTTCACATTCATCACATCGGC
84465334 CATT
1 CATT
84465338 AGGCCTCATC
Statistics
Matches: 34, Mismatches: 14, Indels: 8
0.61 0.25 0.14
Matches are distributed among these distances:
23 5 0.15
24 24 0.71
25 5 0.15
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (24 bp):
CATTTTCACATTCATCACATCGGC
Found at i:84471796 original size:27 final size:27
Alignment explanation
Indices: 84471714--84471796 Score: 139
Period size: 27 Copynumber: 3.1 Consensus size: 27
84471704 GCCAAAATGG
84471714 TGATCGAAATACCCCCATAGGGTAAAA
1 TGATCGAAATACCCCCATAGGGTAAAA
* *
84471741 TAACCGAAATACCCCCATAGGGTAAAA
1 TGATCGAAATACCCCCATAGGGTAAAA
*
84471768 TGATCGAAATACCCCCATAGGGCAAAA
1 TGATCGAAATACCCCCATAGGGTAAAA
84471795 TG
1 TG
84471797 GCCAAAATAC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.17
Consensus pattern (27 bp):
TGATCGAAATACCCCCATAGGGTAAAA
Found at i:84471804 original size:27 final size:27
Alignment explanation
Indices: 84471718--84471852 Score: 135
Period size: 27 Copynumber: 5.0 Consensus size: 27
84471708 AAATGGTGAT
*
84471718 CGAAATACCCCCATAGGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
84471745 CGAAATACCCCCATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
84471772 CGAAATACCCCCATAGGGCAAAATGGC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *** *
84471799 CAAAATACCGATATAGGATAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * ** *
84471826 TGTATTACCCCTGTAAGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
84471853 TGTTTTACCC
Statistics
Matches: 87, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (27 bp):
CGAAATACCCCCATAGGGTAAAATGAC
Found at i:84471836 original size:54 final size:54
Alignment explanation
Indices: 84471714--84471824 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 54
84471704 GCCAAAATGG
* * * *
84471714 TGATCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGGGTAAAA
1 TGATCGAAATACCCCCATAGGGCAAAATAACCAAAATACCCACATAGGATAAAA
** * *
84471768 TGATCGAAATACCCCCATAGGGCAAAATGGCCAAAATACCGATATAGGATAAAA
1 TGATCGAAATACCCCCATAGGGCAAAATAACCAAAATACCCACATAGGATAAAA
84471822 TGA
1 TGA
84471825 CTGTATTACC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.17
Consensus pattern (54 bp):
TGATCGAAATACCCCCATAGGGCAAAATAACCAAAATACCCACATAGGATAAAA
Found at i:84471853 original size:27 final size:27
Alignment explanation
Indices: 84471817--84471880 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
84471807 CGATATAGGA
84471817 TAAAATGACTGTATTACCCCTGTAAGG
1 TAAAATGACTGTATTACCCCTGTAAGG
* *
84471844 TAAAATGACTGTTTTACCCTTGTAAGG
1 TAAAATGACTGTATTACCCCTGTAAGG
84471871 TAAAATGACT
1 TAAAATGACT
84471881 CATTTTCCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (27 bp):
TAAAATGACTGTATTACCCCTGTAAGG
Found at i:84471890 original size:27 final size:27
Alignment explanation
Indices: 84471817--84471890 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
84471807 CGATATAGGA
* * *
84471817 TAAAATGACTGTATTACCCCTGTAAGG
1 TAAAATGACTATTTTACCCTTGTAAGG
*
84471844 TAAAATGACTGTTTTACCCTTGTAAGG
1 TAAAATGACTATTTTACCCTTGTAAGG
84471871 TAAAATGACTCATTTT-CCCT
1 TAAAATGACT-ATTTTACCCT
84471891 ACAATGTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 39 0.91
28 4 0.09
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (27 bp):
TAAAATGACTATTTTACCCTTGTAAGG
Found at i:84475879 original size:46 final size:46
Alignment explanation
Indices: 84475811--84475978 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
84475801 TTTGTGTGCT
84475811 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCC
* * * * *
84475857 AGTGTAAGACATGTCTGAGACATGCTTCAGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATA-TGAGAGCC
* * * ** * * *
84475905 AATGTAAGACATGTTTGGGGCATGCATCGG-CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAATATGAGAGCC
84475951 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
84475979 AGCCTCGCTA
Statistics
Matches: 96, Mismatches: 21, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 60 0.62
47 2 0.02
48 31 0.32
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCC
Found at i:84476005 original size:94 final size:94
Alignment explanation
Indices: 84475808--84476008 Score: 251
Period size: 94 Copynumber: 2.1 Consensus size: 94
84475798 TCATTTGTGT
* *
84475808 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCT
* **
84475873 GAGACATGCTTCAGCCTCGAGATATTTAA
66 GAGACATGCATCAGCCTCGAGATATACAA
* * * * ** *
84475902 GCCAATGTAAGACATGTTTGGGGCATGCATCGG-CATTGAGACGAGAGCTAGTGTAAGACATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAAGACGAGAGCCAGTGTAAGACATGTC
* **
84475966 TGGGACATGCATCAGCCTCGCTATATACAA
65 TGAGACATGCATCAGCCTCGAGATATACAA
84475996 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
84476009 CTATCTGTGA
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
93 2 0.02
94 87 0.98
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCT
GAGACATGCATCAGCCTCGAGATATACAA
Found at i:84476141 original size:49 final size:49
Alignment explanation
Indices: 84476042--84476167 Score: 135
Period size: 49 Copynumber: 2.6 Consensus size: 49
84476032 TGTTACGTGT
** *
84476042 CAATGTAAGACCTATCTGGGACATGGCATTAACACCAATAGATGAGAGC
1 CAATGTAAGACCTATCTGGGACATGGCAACAACACCAATAGATGAAAGC
* * ** * * *
84476091 CAGTGTAAGACCTATCTGGGACATGTCAACGGCCCCACTATATGAAAGC
1 CAATGTAAGACCTATCTGGGACATGGCAACAACACCAATAGATGAAAGC
* *
84476140 CAATGTAAGACCATGTCTGGGATATGGC
1 CAATGTAAGACC-TATCTGGGACATGGC
84476168 GTCAGCATCT
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
49 50 0.81
50 12 0.19
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (49 bp):
CAATGTAAGACCTATCTGGGACATGGCAACAACACCAATAGATGAAAGC
Found at i:84477779 original size:18 final size:18
Alignment explanation
Indices: 84477756--84477864 Score: 191
Period size: 18 Copynumber: 6.1 Consensus size: 18
84477746 GCCGTGTGAG
*
84477756 CCAGACACACCCGTGTCA
1 CCAGACACGCCCGTGTCA
84477774 CCAGACACGCCCGTGTCA
1 CCAGACACGCCCGTGTCA
84477792 CCAGACACGCCCGTGTCA
1 CCAGACACGCCCGTGTCA
84477810 CCAGACACGCCCGTGTCA
1 CCAGACACGCCCGTGTCA
84477828 CCAGACACGCCCGTGTCA
1 CCAGACACGCCCGTGTCA
* *
84477846 CCAGACATGCCTGTGTCA
1 CCAGACACGCCCGTGTCA
84477864 C
1 C
84477865 AGGACGTGTG
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 88 1.00
ACGTcount: A:0.23, C:0.43, G:0.21, T:0.13
Consensus pattern (18 bp):
CCAGACACGCCCGTGTCA
Found at i:84479139 original size:43 final size:42
Alignment explanation
Indices: 84479073--84479202 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 42
84479063 AGCTCGTACA
* * *
84479073 ATGCCATATCTCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATATCCCAGACATGGTCTTACATGTAATCACATATCG
* * * *
84479115 ATGCCACTATCCCAGACAAGGTCTTACACGAAATCACA-ATACA
1 ATGCCA-TATCCCAGACATGGTCTTACATGTAATCACATAT-CG
* * *
84479158 ATGCCAATGTCCCAGACATGGTCTTACATGTAATTACATCTCG
1 ATGCC-ATATCCCAGACATGGTCTTACATGTAATCACATATCG
84479201 AT
1 AT
84479203 AATCCTAATG
Statistics
Matches: 70, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
42 8 0.11
43 60 0.86
44 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:84490542 original size:40 final size:40
Alignment explanation
Indices: 84490498--84490577 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
84490488 ATTAAATAAG
84490498 TTAATTTTGATTACATTTAGATCAAGAAAAGTGAAATATA
1 TTAATTTTGATTACATTTAGATCAAGAAAAGTGAAATATA
84490538 TTAATTTTGATTACATTTAGATCAAGAAAAGTGAAATATA
1 TTAATTTTGATTACATTTAGATCAAGAAAAGTGAAATATA
84490578 GATTTAGATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (40 bp):
TTAATTTTGATTACATTTAGATCAAGAAAAGTGAAATATA
Found at i:84492599 original size:29 final size:29
Alignment explanation
Indices: 84492557--84492612 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
84492547 TACAAGTATC
*
84492557 TATAGTTTTCAGAATCTAGAGTTTCACAA
1 TATAGTTTTCAGAATCTAAAGTTTCACAA
*
84492586 TATAGTTTTCAGAATTTAAAGTTTCAC
1 TATAGTTTTCAGAATCTAAAGTTTCAC
84492613 GGTGTATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (29 bp):
TATAGTTTTCAGAATCTAAAGTTTCACAA
Found at i:84493028 original size:40 final size:40
Alignment explanation
Indices: 84492973--84493054 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
84492963 TATATTTAGA
84492973 AAACTCAAGTTCTGATACTTTTCAAAAAACACCCTACTTC
1 AAACTCAAGTTCTGATACTTTTCAAAAAACACCCTACTTC
* * *
84493013 AAACTCAAGTTCTGATATTTTTTAGAAAACACCCTACTTC
1 AAACTCAAGTTCTGATACTTTTCAAAAAACACCCTACTTC
84493053 AA
1 AA
84493055 TTAAAACATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (40 bp):
AAACTCAAGTTCTGATACTTTTCAAAAAACACCCTACTTC
Found at i:84493976 original size:35 final size:36
Alignment explanation
Indices: 84493899--84493983 Score: 102
Period size: 36 Copynumber: 2.4 Consensus size: 36
84493889 TGATGGCTGG
* * *
84493899 GCATGCCTAACATGGGAATCAGAATGAGAAATAATG
1 GCATGCTTAACATGGGAATCAAAATGAGAAATAATA
* *
84493935 GCATGCTTAACATGTGAGTCAAAAT-A-AAATTAATA
1 GCATGCTTAACATGGGAATCAAAATGAGAAA-TAATA
84493970 GCATGCTTAACATG
1 GCATGCTTAACATG
84493984 CAAACCAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
34 3 0.07
35 19 0.44
36 21 0.49
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (36 bp):
GCATGCTTAACATGGGAATCAAAATGAGAAATAATA
Found at i:84498984 original size:21 final size:20
Alignment explanation
Indices: 84498960--84499000 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
84498950 TTTACAGCAC
84498960 ATTTACTCATAAAATTTTATA
1 ATTTAC-CATAAAATTTTATA
* *
84498981 ATTTTCCATCAAATTTTATA
1 ATTTACCATAAAATTTTATA
84499001 TCTTTTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTACCATAAAATTTTATA
Found at i:84500754 original size:43 final size:43
Alignment explanation
Indices: 84500597--84500755 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
84500587 TATGTGCTTT
* *
84500597 CATGTAAGACCACATCTGGGACGTTGGCATTGACT-TATGATTGA
1 CATGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGATT-A
* ** * * * *
84500641 CGTGTAAGACCATGTTTGGGACGTTCGTATC-ATATTTGATTT
1 CATGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTA
* *
84500683 CGTGTAAGACC-CTATCTAGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-ATCTGGGAC-GTTGGCATCGATATTTGATTA
* *
84500726 CATGTAAGACCACGTCTGGGTCGTTGGCAT
1 CATGTAAGACCACATCTGGGACGTTGGCAT
84500756 TGTATAAGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 24 0.27
43 40 0.45
44 25 0.28
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTA
Found at i:84509610 original size:29 final size:28
Alignment explanation
Indices: 84509576--84509670 Score: 109
Period size: 29 Copynumber: 3.3 Consensus size: 28
84509566 TACTCAATCA
*
84509576 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
84509605 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
84509634 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
84509663 CGCACACT
1 CGCACACT
84509671 CAATGCCAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 2 0.04
29 53 0.96
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:84513290 original size:37 final size:37
Alignment explanation
Indices: 84513240--84513317 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
84513230 TATAAAAGAA
84513240 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
84513277 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
84513314 GTCT
1 GTCT
84513318 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:84513480 original size:49 final size:49
Alignment explanation
Indices: 84513420--84513542 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
84513410 CATATATTTT
*
84513420 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
84513469 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
84513518 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
84513543 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:84521669 original size:40 final size:39
Alignment explanation
Indices: 84521625--84521803 Score: 205
Period size: 40 Copynumber: 4.5 Consensus size: 39
84521615 GCTCGATTGT
* * *
84521625 CTTCGGGACGTAGCCCGGTTATAGTGATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTT-TAGTGACTCGCACAAATGC
*
84521665 CTTCGGGACTTAACCCGGATTTAGTGACTCGCACGAATGC
1 CTTCGGGACTTAACCCGG-TTTAGTGACTCGCACAAATGC
* * *
84521705 CTTCGGGACTTAACCCGGTTTTAGTAACTCACACCAATGC
1 CTTCGGGACTTAACCCGG-TTTAGTGACTCGCACAAATGC
* * * *
84521745 CTTCGGGACTTAACCCGAATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCG-GTTTAGTGAC-TCGCACAAATGC
*
84521786 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
84521804 ACACCATTCG
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
40 94 0.78
41 26 0.22
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAACCCGGTTTAGTGACTCGCACAAATGC
Found at i:84521722 original size:80 final size:80
Alignment explanation
Indices: 84521585--84521803 Score: 242
Period size: 80 Copynumber: 2.7 Consensus size: 80
84521575 GAATCACGTA
* * * * * * * * *
84521585 CCTTCGGAATTTAA-CCGGATATAGCGACTGGCTCGATTGTCTTCGGGACGTAGCCCGGTTATAG
1 CCTTCGGGACTTAACCCGGATTTAGTGACTAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAG
* * *
84521649 TGATTCGCACAAATG
66 TAACTCACACAAATG
* * *
84521664 CCTTCGGGACTTAACCCGGATTTAGTGACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTAG
1 CCTTCGGGACTTAACCCGGATTTAGTGACTAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAG
*
84521729 TAACTCACACCAATG
66 TAACTCACACAAATG
* * * *
84521744 CCTTCGGGACTTAACCCGAATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAACCCGGATTTAGTGAC-TAGCACGAATGCCTTCGGGACTTAGCCCGG
84521804 ACACCATTCG
Statistics
Matches: 117, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
79 12 0.10
80 79 0.68
81 26 0.22
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATTTAGTGACTAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCACACAAATG
Found at i:84531464 original size:24 final size:24
Alignment explanation
Indices: 84531433--84531480 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
84531423 AAAGGAACTA
84531433 AAAGTACTAGTATTAACTTTCTTT
1 AAAGTACTAGTATTAACTTTCTTT
84531457 AAAGTACTAGTATTAACTTTCTTT
1 AAAGTACTAGTATTAACTTTCTTT
84531481 TTATTATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.46
Consensus pattern (24 bp):
AAAGTACTAGTATTAACTTTCTTT
Found at i:84533150 original size:19 final size:19
Alignment explanation
Indices: 84533126--84533174 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
84533116 AATTTTAGAA
84533126 AATGGGCCCTAAAACCCCT
1 AATGGGCCCTAAAACCCCT
84533145 AATGGGCCCTAAAACCCCT
1 AATGGGCCCTAAAACCCCT
84533164 AATGGGCCCTA
1 AATGGGCCCTA
84533175 TAGTGTCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (19 bp):
AATGGGCCCTAAAACCCCT
Found at i:84534956 original size:19 final size:18
Alignment explanation
Indices: 84534919--84534962 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
84534909 ATACATACAG
84534919 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
84534936 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
84534955 TACTAATT
1 TAATAATT
84534963 AAAATTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:84539763 original size:24 final size:24
Alignment explanation
Indices: 84539731--84539913 Score: 285
Period size: 24 Copynumber: 7.6 Consensus size: 24
84539721 TATCTCAAAT
*
84539731 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
84539755 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
84539779 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
84539803 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
84539827 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
84539851 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
84539875 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
84539899 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
84539914 ACATAATAAG
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 155 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:84539807 original size:72 final size:72
Alignment explanation
Indices: 84539731--84539935 Score: 288
Period size: 72 Copynumber: 2.8 Consensus size: 72
84539721 TATCTCAAAT
* *
84539731 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
*
84539796 CACTATG
66 CACTATA
*
84539803 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
**
84539868 TGCTATA
66 CACTATA
* * * *
84539875 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGA-ACA-TAATAAGCACTATGTGTGC
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACT-AT-AGCACTATGTGTGC
84539936 CACATTCGGT
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
70 1 0.01
71 3 0.03
72 116 0.97
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (72 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
CACTATA
Found at i:84539926 original size:48 final size:48
Alignment explanation
Indices: 84539731--84539935 Score: 225
Period size: 48 Copynumber: 4.3 Consensus size: 48
84539721 TATCTCAAAT
* * * *
84539731 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTCACTATG
1 GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGACAT-AATATA
* ** * *
84539779 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGACATAATATA
* ** **
84539827 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGACATAATATA
** *
84539875 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCG-ACATAATATA
84539923 GCACTATGTGTGC
1 GCACTATGTGTGC
84539936 CACATTCGGT
Statistics
Matches: 145, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
48 139 0.96
49 6 0.04
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGACATAATATA
Found at i:84547484 original size:24 final size:24
Alignment explanation
Indices: 84547452--84547658 Score: 333
Period size: 24 Copynumber: 8.6 Consensus size: 24
84547442 TATCTCAAAT
*
84547452 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
84547476 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
84547500 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
84547524 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
84547548 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
84547572 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
84547596 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
84547620 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
84547644 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
84547659 ACATAATAAG
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 179 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:84550950 original size:22 final size:22
Alignment explanation
Indices: 84550908--84550959 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
84550898 TAAATTGTTC
*
84550908 AATAAAA-ATTATAAAACTGAAA
1 AATAAAATAGTATAAAACTG-AA
*
84550930 AATAAAATAGTATTAAA-TGAA
1 AATAAAATAGTATAAAACTGAA
*
84550951 GATAAAATA
1 AATAAAATA
84550960 AAAAGTACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 10 0.38
22 9 0.35
23 7 0.27
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (22 bp):
AATAAAATAGTATAAAACTGAA
Found at i:84550976 original size:25 final size:26
Alignment explanation
Indices: 84550928--84550985 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
84550918 ATAAAACTGA
84550928 AAAATAAAATAGTATTAAATGAAGAT
1 AAAATAAAATAGTATTAAATGAAGAT
84550954 AAAATAAAA-AGTACTTAAA-GAAGAT
1 AAAATAAAATAGTA-TTAAATGAAGAT
84550979 -AAATAAA
1 AAAATAAA
84550986 TATAAAAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 7 0.23
25 10 0.32
26 14 0.45
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (26 bp):
AAAATAAAATAGTATTAAATGAAGAT
Found at i:84566856 original size:33 final size:35
Alignment explanation
Indices: 84566798--84566864 Score: 111
Period size: 33 Copynumber: 1.9 Consensus size: 35
84566788 GGCTAAAGTA
84566798 ATAATATTGAGTGCGTCCTAATATCTTAGTTCCCAG
1 ATAATATTGAGT-CGTCCTAATATCTTAGTTCCCAG
84566834 ATAATATTGAGT-G-CCTAATATCTTAGTTCCC
1 ATAATATTGAGTCGTCCTAATATCTTAGTTCCC
84566865 CAGAAACAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 18 0.58
34 1 0.03
36 12 0.39
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (35 bp):
ATAATATTGAGTCGTCCTAATATCTTAGTTCCCAG
Found at i:84574135 original size:40 final size:40
Alignment explanation
Indices: 84574028--84574172 Score: 226
Period size: 40 Copynumber: 3.7 Consensus size: 40
84574018 TATTCGGATG
* *
84574028 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
84574068 A-ATTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
84574106 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
84574146 ATAACCGGGCTAAGT--CGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
84574173 AGCAAGTAGC
Statistics
Matches: 97, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
38 36 0.37
39 20 0.21
40 41 0.42
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:84574165 original size:78 final size:78
Alignment explanation
Indices: 84574028--84574172 Score: 229
Period size: 78 Copynumber: 1.9 Consensus size: 78
84574018 TATTCGGATG
* **
84574028 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCGGGCTAAGCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGCCCGAAGGCATT
84574093 TGTGCGAGTTACT
66 TGTGCGAGTTACT
* *
84574106 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAG-TCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AACCGGGCTAAGCCCGAAGGCAT
84574170 TTG
65 TTG
84574173 AGCAAGTAGC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 51 0.84
79 10 0.16
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGCCCGAAGGCATT
TGTGCGAGTTACT
Found at i:84574186 original size:78 final size:78
Alignment explanation
Indices: 84574028--84574205 Score: 227
Period size: 78 Copynumber: 2.3 Consensus size: 78
84574018 TATTCGGATG
* **
84574028 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCGGGCTAAGCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGCCCGAAGGCATT
* *
84574093 TGTGCGAGTTACT
66 TGAGCAAGTTACT
* *
84574106 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAG-TCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AACCGGGCTAAGCCCGAAGGCAT
84574170 TTGAGCAAG-TAGCT
65 TTGAGCAAGTTA-CT
* * *
84574184 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
84574206 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
77 16 0.18
78 62 0.70
79 10 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGCCCGAAGGCATT
TGAGCAAGTTACT
Found at i:84582509 original size:31 final size:31
Alignment explanation
Indices: 84582471--84582531 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
84582461 GAGCAGAAAG
*
84582471 AAAATTTATTTTGATATTATTACATGGCCTA
1 AAAATTTATTTTAATATTATTACATGGCCTA
84582502 AAAATTTATTTTAATATTATTACATGGCCT
1 AAAATTTATTTTAATATTATTACATGGCCT
84582532 GCATTATGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (31 bp):
AAAATTTATTTTAATATTATTACATGGCCTA
Found at i:84583832 original size:25 final size:27
Alignment explanation
Indices: 84583799--84583855 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
84583789 CTTATGAGCA
*
84583799 TCCCAATTAAA-GGTTCTTTGTGAACT
1 TCCCAATTAAATGGCTCTTTGTGAACT
84583825 TCCC-ATTAAATTGGCTCTTTGTGAACT
1 TCCCAATTAAA-TGGCTCTTTGTGAACT
84583852 TCCC
1 TCCC
84583856 GATAGTGCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 6 0.21
26 4 0.14
27 18 0.64
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (27 bp):
TCCCAATTAAATGGCTCTTTGTGAACT
Found at i:84584039 original size:24 final size:23
Alignment explanation
Indices: 84583991--84584044 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
84583981 AACCCAGATA
*
84583991 AGCTTCCTGATAGGCTCCTTATG
1 AGCTTCCTGAAAGGCTCCTTATG
*
84584014 AGCTTCCTGAAATGGCT-CTGTGTG
1 AGCTTCCTGAAA-GGCTCCT-TATG
84584038 AGCTTCC
1 AGCTTCC
84584045 CGTTACAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (23 bp):
AGCTTCCTGAAAGGCTCCTTATG
Found at i:84587590 original size:3 final size:3
Alignment explanation
Indices: 84587582--84587626 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
84587572 TTTCATTCTT
84587582 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
84587627 GTATATATCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:84589094 original size:52 final size:53
Alignment explanation
Indices: 84589032--84589131 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 53
84589022 TAAATTCTTT
* *
84589032 TTTTTATAGGATAAAAACCAACAGCCTAAGATTATCTTCTCCT-TTTTATATA
1 TTTTTATAGGATAAAAACCAACAACCCAAGATTATCTTCTCCTCTTTTATATA
* *
84589084 TTTTTCTAGGATAAAAACCAATAACCCAAGATTATCTTCTCCTCTTTT
1 TTTTTATAGGATAAAAACCAACAACCCAAGATTATCTTCTCCTCTTTT
84589132 TTAGGTAGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 39 0.91
53 4 0.09
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (53 bp):
TTTTTATAGGATAAAAACCAACAACCCAAGATTATCTTCTCCTCTTTTATATA
Found at i:84592813 original size:39 final size:39
Alignment explanation
Indices: 84592759--84592911 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
84592749 GAATGTTCGA
*
84592759 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
84592798 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
84592837 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
84592876 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
84592912 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:84592927 original size:40 final size:39
Alignment explanation
Indices: 84592760--84592941 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
84592750 AATGTTCGAG
* *
84592760 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
84592799 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
84592838 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
84592877 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
84592917 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
84592942 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:84600897 original size:39 final size:39
Alignment explanation
Indices: 84600843--84600995 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
84600833 GAATGTTCGA
*
84600843 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
84600882 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
84600921 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
84600960 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
84600996 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:84601011 original size:40 final size:39
Alignment explanation
Indices: 84600844--84601025 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
84600834 AATGTTCGAG
* *
84600844 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
84600883 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
84600922 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
84600961 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
84601001 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
84601026 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:84613139 original size:39 final size:39
Alignment explanation
Indices: 84613112--84613223 Score: 188
Period size: 39 Copynumber: 2.9 Consensus size: 39
84613102 GTCTAGCACG
*
84613112 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
84613151 TAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
84613190 TAGCCTACGGACCTGAAGTCCGGATATAATTCTC
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
84613224 ACAGATATAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:84617538 original size:21 final size:21
Alignment explanation
Indices: 84617512--84617553 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
84617502 CGTCAAGAAG
*
84617512 AAAGATGGTTCCGTGAGACTT
1 AAAGATGGATCCGTGAGACTT
84617533 AAAGATGGATCCGTGAGACTT
1 AAAGATGGATCCGTGAGACTT
84617554 TGTATCGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (21 bp):
AAAGATGGATCCGTGAGACTT
Found at i:84622877 original size:93 final size:93
Alignment explanation
Indices: 84622764--84622935 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
84622754 CGCCCATAAG
* * *
84622764 CGAACTCGGCCTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84622829 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
84622857 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84622922 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84622936 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:84622932 original size:46 final size:46
Alignment explanation
Indices: 84622757--84622932 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
84622747 TGTAACCCGC
* * * *
84622757 CCATAAGCGAACTCGGCCTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
84622803 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
84622853 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
84622896 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
84622933 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84622951 original size:46 final size:46
Alignment explanation
Indices: 84622806--84622944 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
84622796 TTCGCATCCA
84622806 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
84622854 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
84622899 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
84622945 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:84626190 original size:71 final size:71
Alignment explanation
Indices: 84626104--84626267 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84626094 CGATTTGTCT
84626104 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84626169 CTTTCA
66 CTTTCA
84626175 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84626240 CTTTCA
66 CTTTCA
84626246 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84626268 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:84626305 original size:71 final size:70
Alignment explanation
Indices: 84626104--84626301 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
84626094 CGATTTGTCT
* * * *
84626104 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84626169 CTTTCA
65 CTTTCA
* * * *
84626175 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84626240 CTTTCA
65 CTTTCA
* *
84626246 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
84626302 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84631547 original size:46 final size:46
Alignment explanation
Indices: 84631489--84631669 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
84631479 ACTAGGATTT
84631489 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
84631535 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
84631581 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
84631628 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84631670 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:84631650 original size:93 final size:93
Alignment explanation
Indices: 84631491--84631661 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
84631481 TAGGATTTGA
* *
84631491 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84631556 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84631584 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84631649 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84631662 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84634654 original size:29 final size:29
Alignment explanation
Indices: 84634568--84634651 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
84634558 CATAGTATCG
* * * *
84634568 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
84634598 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
84634627 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
84634652 TCTTGTTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:84634655 original size:14 final size:15
Alignment explanation
Indices: 84634577--84634655 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
84634567 GTATCTTGGG
*
84634577 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
84634592 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
84634607 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
84634621 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
84634636 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
84634650 TTTCTT
1 TTTCTT
84634656 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 18 0.33
15 33 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:84637155 original size:46 final size:46
Alignment explanation
Indices: 84636992--84637164 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
84636982 GGTTGAGCAT
*
84636992 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
84637036 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
84637081 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
84637129 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84637165 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:84639608 original size:40 final size:39
Alignment explanation
Indices: 84639564--84639787 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 39
84639554 GCTACTCGTT
* *
84639564 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTC-GGATCTTAGCCCGATT-TAGTAACTCACA
* *
84639604 CAAATGCCTTCGGGA-CTTAACCCCGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTT-AGCCCGATTTAGTAACTCACA
*
84639644 CAAATGCCTTCGGATCTTAGTCCGCATTTAGTAACTCACA
1 CAAATGCCTTCGGATCTTAGCCCG-ATTTAGTAACTCACA
* * *
84639684 CAAATGCCTTCGGATCTTAGTCTGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCG-ATTTAGTAACTCACA
* * * * *
84639724 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAG-CCCGATTTAGTAACTCA-CA
84639765 CAAA-GCCTTCGGGA-CTTAGCCCG
1 CAAATGCCTTC-GGATCTTAGCCCG
84639788 GACATAATTC
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 10 0.06
40 132 0.83
41 17 0.11
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGATCTTAGCCCGATTTAGTAACTCACA
Found at i:84639783 original size:80 final size:79
Alignment explanation
Indices: 84639564--84639787 Score: 283
Period size: 80 Copynumber: 2.8 Consensus size: 79
84639554 GCTACTCGTT
* * * *
84639564 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCC
1 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTCACACAAATGCCTTCGGGACTT-AGCCC
84639628 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * *
84639644 CAAATGCCTTCGGATCTTAGTCCGCATTTAGTAACTCACACAAATGCCTTC-GGATCTTAGTCTG
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCG
84639708 AATTTAGTAACTCGCA
65 -ATTTAGTAACTCGCA
* * *
84639724 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCG
84639788 GACATAATTC
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
79 9 0.07
80 106 0.85
81 9 0.07
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (79 bp):
CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGA
TTTAGTAACTCGCA
Found at i:84656577 original size:40 final size:39
Alignment explanation
Indices: 84656450--84656579 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
84656440 ATGCTGGAAA
* *
84656450 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
84656490 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
84656530 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
84656570 TTATATCCGG
1 TTATATCCGG
84656580 TTGTATTCTG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:84659292 original size:6 final size:6
Alignment explanation
Indices: 84659273--84659330 Score: 64
Period size: 6 Copynumber: 9.5 Consensus size: 6
84659263 TCAGAACTAA
* * *
84659273 AATCAA AATGAG AATCAG AATCAG AATCAG -GTGACAG AATCAG AATCAG
1 AATCAG AATCAG AATCAG AATCAG AATCAG AAT--CAG AATCAG AATCAG
84659322 AATCAG AAT
1 AATCAG AAT
84659331 TAGGTGACAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
5 1 0.02
6 39 0.89
7 3 0.07
8 1 0.02
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (6 bp):
AATCAG
Found at i:84659316 original size:25 final size:25
Alignment explanation
Indices: 84659283--84659375 Score: 96
Period size: 25 Copynumber: 3.5 Consensus size: 25
84659273 AATCAAAATG
84659283 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
84659308 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATC------AGGTGAC
* * *
84659339 AAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
84659364 AGAATTAGAATC
1 AGAATCAGAATC
84659376 GTAATGTGAA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
25 34 0.60
31 23 0.40
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:84659320 original size:31 final size:31
Alignment explanation
Indices: 84659276--84659358 Score: 130
Period size: 31 Copynumber: 2.7 Consensus size: 31
84659266 GAACTAAAAT
*
84659276 CAAAATGAGAATCAGAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGGTGA
* *
84659307 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGGTGA
*
84659338 CAAAATCAGAATCAGTATCAG
1 CAAAATCAGAATCAGAATCAG
84659359 GTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.18
Consensus pattern (31 bp):
CAAAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:84659622 original size:27 final size:27
Alignment explanation
Indices: 84659498--84659632 Score: 139
Period size: 27 Copynumber: 5.0 Consensus size: 27
84659488 AGCATGGCTG
* *
84659498 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* * *
84659524 CCAGATACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
84659551 CCAGATACAGATATTGTGGCAGAGCCT
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
84659578 CCAG-AATAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATA-TTGTGGCAGAGCCA
* * *
84659605 CCAGAAATAGATAATGTGGCAAAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
84659632 C
1 C
84659633 TTAACAGAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.10
27 78 0.81
28 8 0.08
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:84659838 original size:22 final size:22
Alignment explanation
Indices: 84659790--84659848 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
84659780 GTAAATACGT
*
84659790 TTGGCACGAAGCCATAGTCATG
1 TTGGCACGAAGCCATAGTCAGG
* * *
84659812 ATGGCACGAAGCCATATTTAGG
1 TTGGCACGAAGCCATAGTCAGG
84659834 TTGGCAC-AGAGCCAT
1 TTGGCACGA-AGCCAT
84659849 CGATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 1 0.03
22 30 0.97
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (22 bp):
TTGGCACGAAGCCATAGTCAGG
Found at i:84659977 original size:27 final size:26
Alignment explanation
Indices: 84659939--84660018 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
84659929 ATCGGTTAAT
*
84659939 AGATATTGTGGCAAAGTCACCAGATAC
1 AGATATTGTGGCAAAGCCACCAGA-AC
* *
84659966 AGATATTGTGGCAGAGCCTCCAGAAC
1 AGATATTGTGGCAAAGCCACCAGAAC
*
84659992 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAAAGCCACCAGAAC
84660019 GCTTCCTCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.15
27 40 0.85
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
AGATATTGTGGCAAAGCCACCAGAAC
Found at i:84660271 original size:27 final size:27
Alignment explanation
Indices: 84660242--84660500 Score: 322
Period size: 27 Copynumber: 9.6 Consensus size: 27
84660232 GGGTAAAATG
* * * *
84660242 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
84660269 GTAATTCTACCCTAC-AGGAGTATTTCA
1 GTAATTCTACCCTACAAGG-GTATTTCA
*
84660296 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
84660323 ATAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
84660350 GTAATTCAACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
84660377 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
84660404 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
84660431 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
84660458 GTATTTCTACCTTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
84660485 GTAATGCTAGCCTACA
1 GTAATTCTACCCTACA
84660501 GATATGAGAT
Statistics
Matches: 203, Mismatches: 27, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
26 3 0.01
27 198 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:84666466 original size:40 final size:40
Alignment explanation
Indices: 84666358--84666607 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
84666348 CGGGATTTAA
* * * * *
84666358 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84666398 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84666438 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84666478 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84666518 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84666558 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84666598 CCGGATATAT
1 CCGGATATAT
84666608 TTTCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84672546 original size:8 final size:8
Alignment explanation
Indices: 84672533--84672565 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
84672523 CTAAAGTGTC
84672533 AAAATGTG
1 AAAATGTG
84672541 AAAATGTG
1 AAAATGTG
84672549 AAAATGTG
1 AAAATGTG
84672557 AAAATGTG
1 AAAATGTG
84672565 A
1 A
84672566 GGGCTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:84674120 original size:17 final size:18
Alignment explanation
Indices: 84674093--84674135 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
84674083 GGTGTGTGAC
*
84674093 CTTTTAAAAGTT-GAAAA
1 CTTTTATAAGTTCGAAAA
* *
84674110 TTTTTATAAGTTCTAAAA
1 CTTTTATAAGTTCGAAAA
84674128 CTTTTATA
1 CTTTTATA
84674136 TGTTATCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (18 bp):
CTTTTATAAGTTCGAAAA
Found at i:84674817 original size:49 final size:47
Alignment explanation
Indices: 84674761--84674892 Score: 201
Period size: 49 Copynumber: 2.8 Consensus size: 47
84674751 GTGCTAATTA
* * *
84674761 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTTGGATAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATA--AGT
*
84674810 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATAAGT
*
84674857 TACCTTGATTTGGCTACGGACCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
84674893 TATCAATTGA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 37 0.48
49 40 0.52
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATAAGT
Found at i:84677777 original size:120 final size:121
Alignment explanation
Indices: 84677563--84677811 Score: 313
Period size: 120 Copynumber: 2.1 Consensus size: 121
84677553 CGAATGGTAT
* * * *
84677563 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGAGTCAAGTCCCGAAGGCATTT
*
84677628 GTGCGAGTTACCAAATCCGAGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAATCCGAGTCAATTCCCGAAGGCAATTGTGCGAGTTACCAAAA
* * * * * *
84677684 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACTGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGAGTCAAGTCCCGAAGGCATTT
* * * * * * *
84677748 GTGCGAGTTACTAAATCTG-GGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
66 GTGCGAGTTACCAAATCCGAGTC-AATTCCCGAAGGCAATTGTGCGAGTTACCAAAA
84677804 CCGGGCTA
1 CCGGGCTA
84677812 TGTTCCAAAG
Statistics
Matches: 108, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
119 2 0.02
120 80 0.74
121 26 0.24
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGAGTCAAGTCCCGAAGGCATTT
GTGCGAGTTACCAAATCCGAGTCAATTCCCGAAGGCAATTGTGCGAGTTACCAAAA
Found at i:84677811 original size:40 final size:40
Alignment explanation
Indices: 84677561--84677793 Score: 272
Period size: 40 Copynumber: 5.8 Consensus size: 40
84677551 TTCGAATGGT
* * * *
84677561 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAA
* *
84677602 ATCCGAG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* *
84677642 ATCCGAG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* *
84677682 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* * * *
84677722 AACTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* * *
84677762 ATCTGGGCTAATTCCCGAAGGCAATTGTGCGA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
84677794 ATCACTATAA
Statistics
Matches: 175, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
40 149 0.85
41 26 0.15
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:84677834 original size:120 final size:120
Alignment explanation
Indices: 84677614--84677835 Score: 284
Period size: 120 Copynumber: 1.9 Consensus size: 120
84677604 CCGAGTCAAT
* * *
84677614 TCCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTCAATTCCCGAAGGCATTTGTGCGAGTTAC
1 TCCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTCAATTCCCGAAGGCAATTGTGCGAATCAC
* * * * * *
84677679 CAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACTGGGTTAAG
66 CAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGTTACCAAAACTGGGTTAAG
* * *
84677734 TCCCGAAGGCATTTGTGCGAGTTACTAAATCTG-GGCTAATTCCCGAAGGCAATTGTGCGAATCA
1 TCCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTC-AATTCCCGAAGGCAATTGTGCGAATCA
* * * *
84677798 CTATAACCGGGCTATGTTCCAAAGACAATCGAGCGAGT
65 CCAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGT
84677836 CGCTATATCC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
119 2 0.02
120 83 0.98
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (120 bp):
TCCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTCAATTCCCGAAGGCAATTGTGCGAATCAC
CAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGTTACCAAAACTGGGTTAAG
Found at i:84687104 original size:46 final size:44
Alignment explanation
Indices: 84687046--84687272 Score: 177
Period size: 46 Copynumber: 4.9 Consensus size: 44
84687036 CCCGAACAAG
* *
84687046 TGACCA-AGCACTATTGTTCGATTTATGTATGTTCAACACTAACGAA
1 TGACCAGA-CACTATT-TTCGATTTGTGTAGGTTCAAC-CTAACGAA
* * * * **
84687092 TGACTAGACACTATTATCTGATTTGTATAGGTTCAACCTTAATGGG
1 TGACCAGACACTATTTTC-GATTTGTGTAGGTTCAACC-TAACGAA
* ** * *
84687138 TGACCAGGCACTATTGTTCGATTCATGTACGTTCAACCCTAACAAA
1 TGACCAGACACTATT-TTCGATTTGTGTAGGTTCAA-CCTAACGAA
* * *
84687184 TGACTAGACACTATTATCTGATTTGTGTAGGTTCAACCTTAACGAG
1 TGACCAGACACTATTTTC-GATTTGTGTAGGTTCAACC-TAACGAA
* * *
84687230 TGGCCAGGCACTATTATCCGATTTGTGTAGGTTCAACCCTAAC
1 TGACCAGACACTATT-TTCGATTTGTGTAGGTTCAA-CCTAAC
84687273 AGGTGGTCGG
Statistics
Matches: 140, Mismatches: 32, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
45 7 0.05
46 125 0.89
47 8 0.06
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (44 bp):
TGACCAGACACTATTTTCGATTTGTGTAGGTTCAACCTAACGAA
Found at i:84687186 original size:92 final size:92
Alignment explanation
Indices: 84687045--84687364 Score: 363
Period size: 92 Copynumber: 3.5 Consensus size: 92
84687035 GCCCGAACAA
* * * * * *
84687045 GTGACCAAGCACTATTGTTCGATTTATGTATGTTCAACACTAACGAATGACTAGACACTATTATC
1 GTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCCTAACAAATGACTAGACACTATTATC
*
84687110 TGATTTGTATAGGTTCAACCTTAATGG
66 TGATTTGTGTAGGTTCAACCTTAATGG
* *
84687137 GTGACCAGGCACTATTGTTCGATTCATGTACGTTCAACCCTAACAAATGACTAGACACTATTATC
1 GTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCCTAACAAATGACTAGACACTATTATC
* *
84687202 TGATTTGTGTAGGTTCAACCTTAACGA
66 TGATTTGTGTAGGTTCAACCTTAATGG
* * ** ** * * *
84687229 GTGGCCAGGCACTATTATCCGATTTGTGTAGGTTCAACCCTAACAGGTG-GTCGGGCACTATTAT
1 GTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCCTAACAAATGACT-AGACACTATTAT
* * *
84687293 CTGATTCGTGTAGGTTTAACCTTAATAG
65 CTGATTTGTGTAGGTTCAACCTTAATGG
* * * * * *
84687321 GTGATCATGCATTAATATTCGATTCGTGTAGGTTCAACCTTAAC
1 GTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCCTAAC
84687365 GGGTGACCAA
Statistics
Matches: 195, Mismatches: 32, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
91 1 0.01
92 194 0.99
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (92 bp):
GTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCCTAACAAATGACTAGACACTATTATC
TGATTTGTGTAGGTTCAACCTTAATGG
Found at i:84687286 original size:46 final size:46
Alignment explanation
Indices: 84687100--84687405 Score: 245
Period size: 46 Copynumber: 6.7 Consensus size: 46
84687090 AATGACTAGA
* * * ** *
84687100 CACTATTATCTGATTTGTATAGGTTCAACCTTAATGGGTGACCAGG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACAGGTGGCCAGG
* * * * * ** * * *
84687146 CACTATTGTTCGATTCATGTACGTTCAACCCTAACAAATGACTAGA
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACAGGTGGCCAGG
* *
84687192 CACTATTATCTGATTTGTGTAGGTTCAACCTTAAC-GAGTGGCCAGG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACAG-GTGGCCAGG
* * * *
84687238 CACTATTATCCGATTTGTGTAGGTTCAACCCTAACAGGTGGTCGGG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACAGGTGGCCAGG
* * * ** *
84687284 CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAGGTGATCATG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACAGGTGGCCAGG
* * * * * *
84687330 CATTAATATTCGATTCGTGTAGGTTCAACCTTAACGGGTGACCAAG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACAGGTGGCCAGG
* * * * *
84687376 CATTGTTATCTGATTCATGTAGGTTTAACC
1 CACTATTATCCGATTCGTGTAGGTTCAACC
84687406 CAAATAGGTA
Statistics
Matches: 205, Mismatches: 53, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
46 204 1.00
47 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (46 bp):
CACTATTATCCGATTCGTGTAGGTTCAACCTTAACAGGTGGCCAGG
Found at i:84687385 original size:92 final size:91
Alignment explanation
Indices: 84687045--84687429 Score: 333
Period size: 92 Copynumber: 4.2 Consensus size: 91
84687035 GCCCGAACAA
* * ** * * * *
84687045 GTGACCAAGCACTATTGTTCGATTTATGTATGTTCAACACTAAC-GAATGACTAGACACTATTAT
1 GTGACCAGGCACTATTATTCGATTCGTGTAGGTTCAACCCTAACAG-GTGACAAG-CACTATTAT
* * *
84687109 CTGATTTGTATAGGTTCAACCTTAATGG
64 CTGATTCGTGTAGGTTCAACCTTAATAG
* * * ** *
84687137 GTGACCAGGCACTATTGTTCGATTCATGTACGTTCAACCCTAACAAATGACTAGACACTATTATC
1 GTGACCAGGCACTATTATTCGATTCGTGTAGGTTCAACCCTAACAGGTGACAAG-CACTATTATC
* *
84687202 TGATTTGTGTAGGTTCAACCTTAA-CG
65 TGATTCGTGTAGGTTCAACCTTAATAG
* * * * **
84687228 AGTGGCCAGGCACTATTATCCGATTTGTGTAGGTTCAACCCTAACAGGTGGTCGGGCACTATTAT
1 -GTGACCAGGCACTATTATTCGATTCGTGTAGGTTCAACCCTAACAGGT-GACAAGCACTATTAT
*
84687293 CTGATTCGTGTAGGTTTAACCTTAATAG
64 CTGATTCGTGTAGGTTCAACCTTAATAG
* * * * * * * *
84687321 GTGATCATGCATTAATATTCGATTCGTGTAGGTTCAACCTTAACGGGTGACCAAGCATTGTTATC
1 GTGACCAGGCACTATTATTCGATTCGTGTAGGTTCAACCCTAACAGGTGA-CAAGCACTATTATC
* * **
84687386 TGATTCATGTAGGTTTAACCCAAATAG
65 TGATTCGTGTAGGTTCAACCTTAATAG
* * *
84687413 GTAACTAGACACTATTA
1 GTGACCAGGCACTATTA
84687430 CTTTCACCTG
Statistics
Matches: 243, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
91 2 0.01
92 237 0.98
93 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (91 bp):
GTGACCAGGCACTATTATTCGATTCGTGTAGGTTCAACCCTAACAGGTGACAAGCACTATTATCT
GATTCGTGTAGGTTCAACCTTAATAG
Found at i:84689729 original size:37 final size:37
Alignment explanation
Indices: 84689670--84689813 Score: 234
Period size: 37 Copynumber: 3.9 Consensus size: 37
84689660 AGCTCAGATG
* *
84689670 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
84689707 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
84689744 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
84689781 TACTCTCCACACATAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
84689814 AAATATATTT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:84690032 original size:47 final size:47
Alignment explanation
Indices: 84689980--84690398 Score: 622
Period size: 47 Copynumber: 8.9 Consensus size: 47
84689970 TCACACTAGT
* * * * *
84689980 CATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
*
84690027 CATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
* *
84690074 TATTCAGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
* * *
84690121 CATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
* * *
84690168 CATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
*
84690215 CATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
* * * *
84690262 CATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
*
84690309 CATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
* ***
84690356 CATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
84690399 AAAATCCTAA
Statistics
Matches: 335, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 335 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
Found at i:84690066 original size:25 final size:25
Alignment explanation
Indices: 84690038--84690115 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
84690028 ATTCGGCCTT
84690038 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
*
84690063 AT--CACAT-TGGCTAT--TCAGCCTT-
1 ATCACACATAT-GC-ATGCTCA-CATTC
*
84690085 ATCACATATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
84690110 ATCACA
1 ATCACA
84690116 TTGGCCATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 18
0.66 0.05 0.29
Matches are distributed among these distances:
22 6 0.15
23 12 0.29
24 11 0.27
25 12 0.29
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:84690164 original size:25 final size:25
Alignment explanation
Indices: 84690038--84690164 Score: 83
Period size: 25 Copynumber: 5.3 Consensus size: 25
84690028 ATTCGGCCTT
* *
84690038 ATCACACATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
84690063 ATCACAT-T-GGC-TATTCAGCCTT-
1 ATCACATATATGCATGTTCA-CATTC
*
84690085 ATCACATATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
84690110 ATCACAT-T-GGCCA--TTCGGC-CTC
1 ATCACATATATG-CATGTTC-ACATTC
84690132 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
84690157 ATCACATA
1 ATCACATA
84690165 GGCCATTCGG
Statistics
Matches: 74, Mismatches: 16, Indels: 24
0.65 0.14 0.21
Matches are distributed among these distances:
22 22 0.30
23 11 0.15
24 11 0.15
25 30 0.41
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:84690398 original size:94 final size:94
Alignment explanation
Indices: 84689980--84690377 Score: 688
Period size: 94 Copynumber: 4.2 Consensus size: 94
84689970 TCACACTAGT
* *
84689980 CATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
1 CATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
84690045 ATATGCATGCTCACATTCATCACATTGGC
66 ATATGCATGCTCACATTCATCACATTGGC
* * * * * * *
84690074 TATTCAGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCACAT
1 CATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
* *
84690139 ATATGCATGTTCACATTCATCACATAGGC
66 ATATGCATGCTCACATTCATCACATTGGC
84690168 CATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
1 CATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
84690233 ATATGCATGCTCACATTCATCACATTGGC
66 ATATGCATGCTCACATTCATCACATTGGC
*
84690262 CATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
1 CATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
84690327 ATATGCATGCTCACATTCATCACATTGGC
66 ATATGCATGCTCACATTCATCACATTGGC
84690356 CATTCGGCCTTATCACATATAT
1 CATTCGGCCTTATCACATATAT
84690378 ACACATTCAC
Statistics
Matches: 283, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 283 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (94 bp):
CATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
ATATGCATGCTCACATTCATCACATTGGC
Found at i:84694226 original size:2 final size:2
Alignment explanation
Indices: 84694219--84694250 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
84694209 ACATTCGGAC
84694219 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84694251 GCATGTGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84694787 original size:29 final size:29
Alignment explanation
Indices: 84694716--84694789 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
84694706 ATTGTGAGAT
* * *
84694716 TGGCACTAAGTGTACGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
84694745 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
84694774 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84694790 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:84705094 original size:27 final size:24
Alignment explanation
Indices: 84705062--84705110 Score: 62
Period size: 27 Copynumber: 1.9 Consensus size: 24
84705052 AGCAACTAAT
84705062 TTTTAAAATATCACGTTTTCGCAACTG
1 TTTTAAAATAT-AC--TTTCGCAACTG
*
84705089 TTTTAAATTATACTTTCGCAAC
1 TTTTAAAATATACTTTCGCAAC
84705111 AAATAAGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
26 2 0.10
27 10 0.48
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (24 bp):
TTTTAAAATATACTTTCGCAACTG
Found at i:84721696 original size:6 final size:6
Alignment explanation
Indices: 84721678--84721749 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
84721668 AAGAAACATT
*
84721678 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
84721727 ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
84721750 GTAACAGAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
5 3 0.05
6 48 0.86
7 4 0.07
8 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:84721727 original size:31 final size:31
Alignment explanation
Indices: 84721692--84721764 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
84721682 GAACTAGAAT
*
84721692 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
84721723 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
84721754 CAGAATCAAAA
1 CAGAATCAAAA
84721765 ATCAAAATGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:84721951 original size:27 final size:26
Alignment explanation
Indices: 84721909--84722010 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
84721899 GCTCAGTTAT
* * *
84721909 CAGATACTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
84721936 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
84721962 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
84721990 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
84722011 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.10
27 52 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:84722197 original size:22 final size:22
Alignment explanation
Indices: 84722169--84722233 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
84722159 GCAAATACGT
*
84722169 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
84722191 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
84722213 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
84722234 AACGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:84722718 original size:27 final size:27
Alignment explanation
Indices: 84722686--84722774 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
84722676 AAGATATCTC
*
84722686 GGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTTCACCCTATAGGGGTATTTT
* * * * *
84722713 AGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTTCACCCTATAGGGGTATTTT
**
84722740 GGTAATTTCA-CAAATTAGGGGTATTTT
1 GGTAATTTCACCCTA-TAGGGGTATTTT
84722767 GGTAATTT
1 GGTAATTT
84722775 TATAAACCAG
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
26 2 0.04
27 46 0.96
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTTCACCCTATAGGGGTATTTT
Found at i:84722718 original size:53 final size:54
Alignment explanation
Indices: 84722661--84722776 Score: 146
Period size: 54 Copynumber: 2.2 Consensus size: 54
84722651 GGGCAAAATG
**
84722661 GTAATTTTACCCCACAA-GATATCTCGGTAATTCCAC-CCTATAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGATATCTCGGTAATTCCACAAAT-TAGGGGTATTTTA
* * * * *
84722714 GTAATTTTACCCTACAAGGGTATTTCGGTAATTTCACAAATTAGGGGTATTTTG
1 GTAATTTTACCCCACAAGGATATCTCGGTAATTCCACAAATTAGGGGTATTTTA
84722768 GTAATTTTA
1 GTAATTTTA
84722777 TAAACCAGGG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 16 0.30
54 37 0.69
55 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38
Consensus pattern (54 bp):
GTAATTTTACCCCACAAGGATATCTCGGTAATTCCACAAATTAGGGGTATTTTA
Found at i:84722786 original size:27 final size:27
Alignment explanation
Indices: 84722731--84722861 Score: 111
Period size: 27 Copynumber: 4.9 Consensus size: 27
84722721 TACCCTACAA
* * * **
84722731 GGGTATTTCGGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
84722758 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* ****
84722785 GGGTATTTTGGCAATTTTATTGTTC-G
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
84722811 AGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTATAAACCAG
** *
84722839 GGGTATTTCAGTAATTTTGTAAA
1 GGGTATTTTGGTAATTTTATAAA
84722862 TCGAGGGTAA
Statistics
Matches: 83, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 82 0.99
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:84722789 original size:54 final size:54
Alignment explanation
Indices: 84722728--84722855 Score: 150
Period size: 54 Copynumber: 2.4 Consensus size: 54
84722718 TTTTACCCTA
84722728 CAAGGGTATTTCGGTAATTTCACAAATTAG-GGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTCGGTAATTTCA-AAATTAGAGGGTATTTTGGTAATTTTATAAAC
* * * * *** * *
84722782 CAGGGGTATTTTGGCAATTTTATTGTTCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTCAAAATTAGAGGGTATTTTGGTAATTTTATAAAC
*
84722836 CAAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCGGTAATTT
84722856 TGTAAATCGA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 3 0.05
54 57 0.95
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTCGGTAATTTCAAAATTAGAGGGTATTTTGGTAATTTTATAAAC
Found at i:84722856 original size:54 final size:54
Alignment explanation
Indices: 84722758--84722897 Score: 154
Period size: 54 Copynumber: 2.6 Consensus size: 54
84722748 CACAAATTAG
* * ** ***
84722758 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGCAATTTTATTGTTCGA
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGCAATTTTATAAATCGA
* *
84722812 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGCAATTTTATAAATCGA
*** * *
84722866 GGGTAAAATGGTAATTCTGTAAATCAAGGGTA
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTA
84722898 AGATGGTAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGCAATTTTATAAATCGA
Found at i:84722868 original size:27 final size:27
Alignment explanation
Indices: 84722808--84722870 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
84722798 ATTTTATTGT
**
84722808 TCGAGGGTATTTTGGTAATTTTGTAAA
1 TCGAGGGTATTTCAGTAATTTTGTAAA
* *
84722835 CCAAGGGTATTTCAGTAATTTTGTAAA
1 TCGAGGGTATTTCAGTAATTTTGTAAA
84722862 TCGAGGGTA
1 TCGAGGGTA
84722871 AAATGGTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (27 bp):
TCGAGGGTATTTCAGTAATTTTGTAAA
Found at i:84722879 original size:27 final size:27
Alignment explanation
Indices: 84722849--84723113 Score: 359
Period size: 27 Copynumber: 9.8 Consensus size: 27
84722839 GGGTATTTCA
* *
84722849 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
84722876 GTAATTCTGTAAATCAAGGGTAAGATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
84722903 GTAATTCTACAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
84722930 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
84722957 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
84722984 GTAATTCTATAAATTGAGGGTAAGACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
84723011 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
84723038 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * ***
84723065 GTAATTCTGTAAATCAAGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
84723092 GTAATTTTACAAGTCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
84723114 TTTCAATAAT
Statistics
Matches: 210, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 210 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:84723123 original size:27 final size:27
Alignment explanation
Indices: 84723093--84723152 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
84723083 GGTACTTTGG
84723093 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
84723120 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
84723147 TAATTT
1 TAATTT
84723153 ATCTATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:84725799 original size:29 final size:28
Alignment explanation
Indices: 84725731--84725838 Score: 105
Period size: 29 Copynumber: 3.8 Consensus size: 28
84725721 TTCACATACC
* * *
84725731 TGTATCTGGCCCACTTA-GCCCAATCATA
1 TGTATATGGCCCA-TTAGGCCCAAACTTA
84725759 T-TCATATGGCCCATTAGGCCCAAA-TTA
1 TGT-ATATGGCCCATTAGGCCCAAACTTA
84725786 CCTGTATATGGCCCATTAGGCCCAAATCTTA
1 --TGTATATGGCCCATTAGGCCCAAA-CTTA
* *
84725817 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
84725839 GTCACATTCA
Statistics
Matches: 68, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
27 6 0.09
28 16 0.24
29 42 0.62
30 1 0.01
31 3 0.04
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCCAAACTTA
Found at i:84726081 original size:8 final size:8
Alignment explanation
Indices: 84726070--84726108 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
84726060 ACTTTCAGCT
84726070 TTTCGGCA
1 TTTCGGCA
84726078 TTTCGGCA
1 TTTCGGCA
**
84726086 TTTCGGTT
1 TTTCGGCA
84726094 TTTCGGCA
1 TTTCGGCA
84726102 TTTCGGC
1 TTTCGGC
84726109 TTTTGCCGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.08, C:0.23, G:0.26, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:84726112 original size:16 final size:16
Alignment explanation
Indices: 84726070--84726112 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
84726060 ACTTTCAGCT
*
84726070 TTTCGGCATTTCGGCA
1 TTTCGGCTTTTCGGCA
*
84726086 TTTCGGTTTTTCGGCA
1 TTTCGGCTTTTCGGCA
84726102 TTTCGGCTTTT
1 TTTCGGCTTTT
84726113 GCCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.07, C:0.21, G:0.23, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:84729291 original size:31 final size:31
Alignment explanation
Indices: 84729253--84729316 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
84729243 CCTTTTCATA
84729253 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
84729284 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
84729315 TT
1 TT
84729317 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:84729643 original size:24 final size:24
Alignment explanation
Indices: 84729503--84729643 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
84729493 GCTTTATCAT
*
84729503 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
84729528 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
84729552 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
* *
84729575 ATAACT-GGGCATAAGCTC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
84729597 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
84729621 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
84729644 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
21 3 0.03
22 17 0.16
23 17 0.16
24 56 0.53
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:84729718 original size:20 final size:20
Alignment explanation
Indices: 84729693--84729733 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
84729683 TTATGATTAC
84729693 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
84729713 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
84729733 A
1 A
84729734 CCATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84729808 original size:25 final size:25
Alignment explanation
Indices: 84729776--84729823 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84729766 ATACATAAAC
* * *
84729776 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
84729801 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
84729824 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:84736118 original size:45 final size:45
Alignment explanation
Indices: 84735967--84736316 Score: 365
Period size: 45 Copynumber: 7.9 Consensus size: 45
84735957 ATATTGAACA
* ** * *
84735967 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTC--ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* *
84736010 ATGCC-ACTGTCCCAGATAG-GGTCTTACAC-AAATCA-A-ATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAAAACACATATATCG
* * * * * *
84736051 ATACCGATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* * *
84736096 ATGCCAATGTCCTAGACGTGGTCTTACACGAAAACATATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
** * **
84736141 ATGCCAACGTCCCAGGTGTGGTCTTACACAAAAACACATATATTA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* *
84736186 ATGCCAACGTCCCAGACGTGGTTTTACACGAAAACACATGTATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* *
84736231 ATGCCAACGTCCTAGACGTGGTCTTACACAAAAACACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* * **
84736276 ATGCCAACATGCCAGACGTGGTCTTACATAAAAACACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATAT
84736317 CGAAATCCTA
Statistics
Matches: 257, Mismatches: 41, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
41 24 0.09
42 13 0.05
43 23 0.09
44 4 0.02
45 193 0.75
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (45 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
Done.