Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 272 of 438
Found at i:84738286 original size:26 final size:24
Alignment explanation
Indices: 84738257--84738314 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 24
84738247 TCTTTAGTTA
84738257 TTTTTCTCTTTCG-TTCCCTTTCTTT
1 TTTTTCTCTTT-GTTTCCCTTT-TTT
*
84738282 CTTTTTCTTCTTTGTTTCTCTTTTTT
1 -TTTTTC-TCTTTGTTTCCCTTTTTT
84738308 TTTTTCT
1 TTTTTCT
84738315 GATTGAGATC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 1 0.03
25 6 0.21
26 10 0.34
27 12 0.41
ACGTcount: A:0.00, C:0.22, G:0.03, T:0.74
Consensus pattern (24 bp):
TTTTTCTCTTTGTTTCCCTTTTTT
Found at i:84740848 original size:26 final size:26
Alignment explanation
Indices: 84740819--84740925 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
84740809 TGGTACAAAT
84740819 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
84740845 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
84740871 TGATAATGGGTTAGGT-AATGTTCTG
1 TGATAATGGGTTAGGTAAATGTTCCA
*
84740896 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84740922 TGAT
1 TGAT
84740926 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
25 21 0.30
26 50 0.70
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:84740910 original size:51 final size:52
Alignment explanation
Indices: 84740819--84740925 Score: 171
Period size: 51 Copynumber: 2.1 Consensus size: 52
84740809 TGGTACAAAT
84740819 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
** * *
84740871 TGATAATGGGTTAGGT-AATGTTCTGTGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
84740922 TGAT
1 TGAT
84740926 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 35 0.69
52 16 0.31
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:84740952 original size:21 final size:21
Alignment explanation
Indices: 84740928--84740969 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
84740918 TCCATGATGG
84740928 GCATTTCATGTCTTTTGTATT
1 GCATTTCATGTCTTTTGTATT
84740949 GCATTTCATGTCTTTTGTATT
1 GCATTTCATGTCTTTTGTATT
84740970 AAAGAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (21 bp):
GCATTTCATGTCTTTTGTATT
Found at i:84742874 original size:40 final size:40
Alignment explanation
Indices: 84742808--84742974 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
84742798 AAATTGAATG
* * *
84742808 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
84742847 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
84742887 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
84742927 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
84742967 ATATCCGG
1 ATATCCGG
84742975 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:84750881 original size:40 final size:40
Alignment explanation
Indices: 84750815--84750981 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
84750805 AAATTGAATG
* * *
84750815 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
84750854 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
84750894 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
84750934 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
84750974 ATATCCGG
1 ATATCCGG
84750982 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:84754920 original size:46 final size:47
Alignment explanation
Indices: 84754825--84754993 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 47
84754815 GGGTATTACA
* * * *
84754825 AGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACG-AGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGTA--GCT
84754873 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGT-AGCT
* * *
84754919 AGTGTAAGA-CATATCTGGGACAT-GCATCGG-CTACGAGATGT-GTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGTAGCT
84754963 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
84754994 ATGTCTGACC
Statistics
Matches: 108, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 59 0.55
47 13 0.12
48 10 0.09
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGTAGCT
Found at i:84758026 original size:29 final size:29
Alignment explanation
Indices: 84757936--84758095 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
84757926 ACTCGATTTC
* * **
84757936 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
84757965 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
84757993 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
84758023 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84758052 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84758081 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
84758096 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:84765987 original size:29 final size:29
Alignment explanation
Indices: 84765897--84766056 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
84765887 ACTCGATTTC
* * **
84765897 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
84765926 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
84765954 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
84765984 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84766013 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84766042 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
84766057 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:84781005 original size:27 final size:27
Alignment explanation
Indices: 84780975--84781304 Score: 285
Period size: 27 Copynumber: 12.3 Consensus size: 27
84780965 AAGGTATTTC
*
84780975 GATAATTTTACAAATCGGGGGTGTTTT
1 GATAATTTTACAAATCGAGGGTGTTTT
* *
84781002 GATAATTTTACAAATTGAGGGTATTTT
1 GATAATTTTACAAATCGAGGGTGTTTT
* *
84781029 GATAATTTTACAAATCAAGGGTGTTTC
1 GATAATTTTACAAATCGAGGGTGTTTT
* * * *
84781056 GGTAATTTTATAAATTGAGGGTGTTTC
1 GATAATTTTACAAATCGAGGGTGTTTT
*
84781083 GGTAATTTTACAAATCGAGGGTGTTTT
1 GATAATTTTACAAATCGAGGGTGTTTT
* * *
84781110 GGTAATTTCACAAATCGAGGGTATTTT
1 GATAATTTTACAAATCGAGGGTGTTTT
* * **
84781137 -AGTAATTTCAC-AATCAAGGGTACTTT
1 GA-TAATTTTACAAATCGAGGGTGTTTT
*
84781163 GGTAATTTTACAAATC-AGGG-GTATTT
1 GATAATTTTACAAATCGAGGGTGT-TTT
* * *
84781189 CGATAATTTTATAAATTGAGGGTGTTTC
1 -GATAATTTTACAAATCGAGGGTGTTTT
* * * * *
84781217 GATAATTTTAAAAATCAAAGGTATTTC
1 GATAATTTTACAAATCGAGGGTGTTTT
* * * * *
84781244 GGTAATTTTACAAATTGAGGTTATTTC
1 GATAATTTTACAAATCGAGGGTGTTTT
* *
84781271 GATAATTTCAC-AATCGAGGGTATTTT
1 GATAATTTTACAAATCGAGGGTGTTTT
84781297 -AGTAATTT
1 GA-TAATTT
84781305 CTCTTTATTA
Statistics
Matches: 252, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.00
26 46 0.18
27 197 0.78
28 6 0.02
29 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GATAATTTTACAAATCGAGGGTGTTTT
Found at i:84781033 original size:81 final size:81
Alignment explanation
Indices: 84780939--84781283 Score: 286
Period size: 81 Copynumber: 4.3 Consensus size: 81
84780929 TACCCTATAG
* * * * *
84780939 GGGTAATTCGATAATTTTAC-ACTACAAAGGTATTTCGATAATTTTACAAATCGGGGGTGTTTTG
1 GGGTATTTTGATAATTTTACAAAT-CAAAGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCG
*
84781003 ATAATTTTACAAATTGA
65 ATAATTTTACAAATCGA
* * * * * *
84781020 GGGTATTTTGATAATTTTACAAATCAAGGGTGTTTCGGTAATTTTATAAATTGAGGGTGTTTCGG
1 GGGTATTTTGATAATTTTACAAATCAAAGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGA
84781085 TAATTTTACAAATCGA
66 TAATTTTACAAATCGA
* * * * * * * * *
84781101 GGGTGTTTTGGTAATTTCACAAATCGAGGGTATTT-TAGTAATTTCAC-AATCAAGGGTACTTT-
1 GGGTATTTTGATAATTTTACAAATCAAAGGTATTTCGA-TAATTTTACAAATCGAGGGT-GTTTC
*
84781163 GGTAATTTTACAAATC-A
64 GATAATTTTACAAATCGA
* * ** * * * * * *
84781180 GGGGTATTTCGATAATTTTATAAATTGAGGGTGTTTCGATAATTTTAAAAATCAAAGGTATTTCG
1 -GGGTATTTTGATAATTTTACAAATCAAAGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCG
* *
84781245 GTAATTTTACAAATTGA
65 ATAATTTTACAAATCGA
* * *
84781262 GGTTATTTCGATAATTTCACAA
1 GGGTATTTTGATAATTTTACAA
84781284 TCGAGGGTAT
Statistics
Matches: 216, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
79 1 0.00
80 62 0.29
81 150 0.69
82 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGATAATTTTACAAATCAAAGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGA
TAATTTTACAAATCGA
Found at i:84781200 original size:134 final size:134
Alignment explanation
Indices: 84780945--84781304 Score: 463
Period size: 134 Copynumber: 2.7 Consensus size: 134
84780935 ATAGGGGTAA
* * * * *
84780945 TTCGATAATTTT-ACACTACAAAGGTATTTCGATAATTTTACAAATCGGGGGTGTTTTGATAATT
1 TTCGATAATTTTAAAAAT-CAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATT
* * * * *
84781009 TTACAAATTGAGGGTATTTTGATAATTTTACAAATCAAGGGTGTTTCGGTAATTTTATAAATTGA
65 TCAC-AATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTATAAATTGA
84781074 GGGTGT
129 GGGTGT
* * * * * * *
84781080 TTCGGTAATTTTACAAATCGAGGGTGTTTTGGTAATTTCACAAATCGAGGGTATTTT-AGTAATT
1 TTCGATAATTTTAAAAATCAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGA-TAATT
* * *
84781144 TCACAATCAAGGGTACTTTGGTAATTTTACAAATCAGGGGTATTTCGATAATTTTATAAATTGAG
65 TCACAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTATAAATTGAG
84781209 GGTGT
130 GGTGT
* * *
84781214 TTCGATAATTTTAAAAATCAAAGGTATTTCGGTAATTTTACAAATTGAGGTTATTTCGATAATTT
1 TTCGATAATTTTAAAAATCAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTT
*
84781279 CACAATCGAGGGTATTTTAGTAATTT
66 CACAATCGAGGGTATTTTGGTAATTT
84781305 CTCTTTATTA
Statistics
Matches: 189, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
134 136 0.72
135 51 0.27
136 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (134 bp):
TTCGATAATTTTAAAAATCAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTT
CACAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTATAAATTGAGG
GTGT
Found at i:84784354 original size:47 final size:45
Alignment explanation
Indices: 84784237--84784366 Score: 126
Period size: 47 Copynumber: 2.8 Consensus size: 45
84784227 GGGTTATTGT
84784237 GAGCTAGTGTAAGACATGTCT-GGACAT-GCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTATGA
* * *
84784282 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-TATTGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCATT-ATGA
*
84784327 CGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATTGGCC
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCC
84784367 TCGAAACATA
Statistics
Matches: 70, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
45 18 0.26
46 15 0.21
47 19 0.27
48 18 0.26
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTATGA
Found at i:84784400 original size:93 final size:90
Alignment explanation
Indices: 84784239--84784455 Score: 219
Period size: 93 Copynumber: 2.4 Consensus size: 90
84784229 GTTATTGTGA
* ** *
84784239 GCTAGTGTAAGACATGTCT-GGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAACATGAGAGCCAGTGTAAGA-CATGTC
* **
84784303 TGGGACATGGCATCGGTATTGAGACGAGT
65 TGGGACAT-GCATCGGCAACGAGA-G-GT
*
84784332 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAAACAT-A-AGCCAGTGTAAGA-ATTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC--AACATGAGAGCCAGTGTAAGACA-TG
*
84784394 TCTGGGACATGCATTGGCAACGAGAGGT
63 TCTGGGACATGCATCGGCAACGAGAGGT
*
84784422 G-TCAGTGTAAGACCATGTTTGGGACATGGCATTG
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATTG
84784456 ACAAAAATAT
Statistics
Matches: 107, Mismatches: 10, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
89 1 0.01
90 12 0.11
91 14 0.13
92 18 0.17
93 30 0.28
94 28 0.26
95 1 0.01
96 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (90 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAACATGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCGGCAACGAGAGGT
Found at i:84784454 original size:46 final size:43
Alignment explanation
Indices: 84784286--84784455 Score: 135
Period size: 46 Copynumber: 3.7 Consensus size: 43
84784276 TTATGAGAGC
* * * *
84784286 CAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTGAGACGAGTG
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCATCGAGA-G-GTG
* * **
84784333 CTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAAACATAAG
1 C-AGTGTAAGACATGTCTGGGACATGCATTGGCATCGAGAGGT--G
*
84784379 CCAGTGTAAGA-ATTGTCTGGGACATGCATTGGCAACGAGAGGTG
1 -CAGTGTAAGACA-TGTCTGGGACATGCATTGGCATCGAGAGGTG
*
84784423 TCAGTGTAAGACCATGTTTGGGACATGGCATTG
1 -CAGTGTAAGA-CATGTCTGGGACAT-GCATTG
84784456 ACAAAAATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
44 12 0.12
45 12 0.12
46 52 0.52
47 15 0.15
48 9 0.09
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (43 bp):
CAGTGTAAGACATGTCTGGGACATGCATTGGCATCGAGAGGTG
Found at i:84791980 original size:27 final size:26
Alignment explanation
Indices: 84791932--84791991 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
84791922 GCGAGGCTGC
*
84791932 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
84791959 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
84791985 CAGATAT
1 CAGATAT
84791992 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:84791995 original size:2 final size:2
Alignment explanation
Indices: 84791988--84792033 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
84791978 ACCAGAACAG
*
84791988 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84792030 AT AT
1 AT AT
84792034 GTGGCAAAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84792766 original size:27 final size:27
Alignment explanation
Indices: 84792736--84792880 Score: 177
Period size: 27 Copynumber: 5.3 Consensus size: 27
84792726 AGGGTAAAAT
* *
84792736 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
84792763 GGTAATTCTACCCTACACGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
84792790 GGT-GTTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
84792817 GGTAATTCTT-CCCTACAGGGGTATTTC
1 GGTAATT-TTACCCTACAAGGGTATTTC
* *
84792844 GGTAATTCTACCCTACAATGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
84792871 GGTATATTTT
1 GGTA-ATTTT
84792881 TAAATCGAGG
Statistics
Matches: 100, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
26 3 0.03
27 89 0.89
28 7 0.07
29 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:84792893 original size:27 final size:26
Alignment explanation
Indices: 84792835--84793042 Score: 109
Period size: 27 Copynumber: 7.7 Consensus size: 26
84792825 TTCCCTACAG
* ** *
84792835 GGGTATTTCGGTAATTCTACCCTACAA
1 GGGTATTTCGGTAATTTTACAAT-CGA
*
84792862 TGGTATTTCGGTATATTTTTA-AATCGA
1 GGGTATTTCGGTA-A-TTTTACAATCGA
*** **
84792889 GGGTACAACGGTAATTCTGTA-AATTAA
1 GGGTATTTCGGTAATT-T-TACAATCGA
84792916 GGGTAATTT-GGTAATTTTACAAGTCGA
1 GGGT-ATTTCGGTAATTTTACAA-TCGA
* *
84792943 GGGTATTTCAGTAATTTTACAGGTCGA
1 GGGTATTTCGGTAATTTTACA-ATCGA
*** *
84792970 GGGTATTTTAATAATTTCACAAATC-A
1 GGGTATTTCGGTAATTTTAC-AATCGA
* * *
84792996 GGGGTATTTTGGTAATTTTACAAACTA
1 -GGGTATTTCGGTAATTTTACAATCGA
*
84793023 GGGGTATTTTGGTAATTTTA
1 -GGGTATTTCGGTAATTTTA
84793043 TAAACCAAGG
Statistics
Matches: 143, Mismatches: 26, Indels: 24
0.74 0.13 0.12
Matches are distributed among these distances:
25 4 0.03
26 13 0.09
27 118 0.83
28 4 0.03
29 4 0.03
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACAATCGA
Found at i:84793047 original size:27 final size:27
Alignment explanation
Indices: 84792916--84793065 Score: 124
Period size: 27 Copynumber: 5.6 Consensus size: 27
84792906 TGTAAATTAA
* **
84792916 GGGTAATTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** ***
84792942 AGGGTATTTCAGTAATTTTACAGGTC-G
1 -GGGTATTTTGGTAATTTTACAAACCAG
** * *
84792969 AGGGTATTTTAATAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
*
84792997 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
84793024 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
84793051 GGGTATTTTAGTAAT
1 GGGTATTTTGGTAAT
84793066 ACTAGCTTAC
Statistics
Matches: 104, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
27 103 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:84793054 original size:81 final size:81
Alignment explanation
Indices: 84792916--84793065 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
84792906 TGTAAATTAA
* * *** *
84792916 GGGTAATTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAGGTCGAGGGTATTTTAA
1 GGGTAATTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAA
84792981 TAATTTCACAAATCAG
66 TAATTTCACAAATCAG
* ** *
84792997 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
1 GGGTAATTTGGTAATTTTAC-AACTAGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTA
*
84793061 GTAAT
65 ATAAT
84793066 ACTAGCTTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 53 0.93
82 4 0.07
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (81 bp):
GGGTAATTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAA
TAATTTCACAAATCAG
Found at i:84806062 original size:29 final size:29
Alignment explanation
Indices: 84806034--84806135 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
84806024 CCTCCGAGCT
** * * *
84806034 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
84806063 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84806092 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84806121 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
84806136 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:84813918 original size:29 final size:29
Alignment explanation
Indices: 84813890--84813991 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
84813880 CCTCCGAGCT
** * * *
84813890 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
84813919 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84813948 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84813977 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
84813992 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:84822964 original size:26 final size:26
Alignment explanation
Indices: 84822917--84822975 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
84822907 GCGAGGCTGT
*
84822917 CAGATATTGTGACGAAGTCACCA-ATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
84822943 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
84822969 CAGATAT
1 CAGATAT
84822976 ATATATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:84834125 original size:23 final size:23
Alignment explanation
Indices: 84834099--84834170 Score: 55
Period size: 23 Copynumber: 3.1 Consensus size: 23
84834089 GAAATTAATC
84834099 ATGTACTTGATATTGTTAAATAA
1 ATGTACTTGATATTGTTAAATAA
84834122 ATGT--TT-A-A-TGTATGAAATTAA
1 ATGTACTTGATATTGT-T-AAA-TAA
*
84834143 TCATGTACTCGATATTGTTAAATAA
1 --ATGTACTTGATATTGTTAAATAA
84834168 ATG
1 ATG
84834171 ATAAGTCCCG
Statistics
Matches: 38, Mismatches: 1, Indels: 20
0.64 0.02 0.34
Matches are distributed among these distances:
18 3 0.08
19 2 0.05
20 4 0.11
21 5 0.13
23 11 0.29
25 4 0.11
26 4 0.11
27 2 0.05
28 3 0.08
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.42
Consensus pattern (23 bp):
ATGTACTTGATATTGTTAAATAA
Found at i:84834125 original size:46 final size:46
Alignment explanation
Indices: 84834072--84834170 Score: 189
Period size: 46 Copynumber: 2.2 Consensus size: 46
84834062 TGTGAATTGC
*
84834072 ATAAATGTTTAATGTATGAAATTAATCATGTACTTGATATTGTTAA
1 ATAAATGTTTAATGTATGAAATTAATCATGTACTCGATATTGTTAA
84834118 ATAAATGTTTAATGTATGAAATTAATCATGTACTCGATATTGTTAA
1 ATAAATGTTTAATGTATGAAATTAATCATGTACTCGATATTGTTAA
84834164 ATAAATG
1 ATAAATG
84834171 ATAAGTCCCG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.40, C:0.05, G:0.13, T:0.41
Consensus pattern (46 bp):
ATAAATGTTTAATGTATGAAATTAATCATGTACTCGATATTGTTAA
Found at i:84848082 original size:41 final size:41
Alignment explanation
Indices: 84848037--84848154 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
84848027 TGAAAGATAA
84848037 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
84848078 ATGTAGAC-AAG-AG-A-GC-T-A---C-A-TGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84848108 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84848149 ATGTAG
1 ATGTAG
84848155 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 8 0.15
32 2 0.04
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 2 0.04
40 8 0.15
41 14 0.26
42 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:84848093 original size:71 final size:71
Alignment explanation
Indices: 84848005--84848168 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
84847995 GAGATGTATC
84848005 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84848070 AGGACA
66 AGGACA
*
84848076 CCATGTAGACAAGAGAGCTACATGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84848141 AGGACA
66 AGGACA
84848147 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84848169 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84855190 original size:41 final size:41
Alignment explanation
Indices: 84855145--84855262 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
84855135 TGAAAGATAA
84855145 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
84855186 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84855216 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84855257 ATGTAG
1 ATGTAG
84855263 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:84855201 original size:71 final size:71
Alignment explanation
Indices: 84855113--84855276 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84855103 GAGATGTATC
84855113 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84855178 AGGACA
66 AGGACA
84855184 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84855249 AGGACA
66 AGGACA
84855255 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84855277 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84867893 original size:46 final size:45
Alignment explanation
Indices: 84867826--84868001 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
84867816 TATTTGGGCA
*
84867826 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* ** * *
84867872 TCCGAACTCGTTGAGTTGAGTCCGAGTTAGAGATATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT-CACTTATG-GA-T-GCGAAG
* * *
84867919 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
84867965 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84868002 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 67 0.63
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:84867981 original size:93 final size:93
Alignment explanation
Indices: 84867822--84867992 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
84867812 AGGATATTTG
* * * *
84867822 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
84867887 TTGAGTCCGAGTTAGAGATATGTAACTA
66 TTGAGTCCGAGTTAGAGATATGTAACTA
* * *
84867915 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
84867980 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
84867993 CACTTATGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTAGAGATATGTAACTA
Found at i:84882515 original size:29 final size:29
Alignment explanation
Indices: 84882490--84882584 Score: 138
Period size: 29 Copynumber: 3.3 Consensus size: 29
84882480 ATTGGCATTG
84882490 AGTGTGCGAGCTTCAAATGCATGGCACTA
1 AGTGTGCGAGCTTCAAATGCATGGCACTA
*
84882519 AGTGTGCGAGCTTGAAATGCATGGCACTA
1 AGTGTGCGAGCTTCAAATGCATGGCACTA
* **
84882548 AGTGTGCGAG-TTTAAAGTATATGGCACTA
1 AGTGTGCGAGCTTCAAA-TGCATGGCACTA
84882577 AGTGTGCG
1 AGTGTGCG
84882585 CGGCTGATTA
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
28 5 0.08
29 56 0.92
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
AGTGTGCGAGCTTCAAATGCATGGCACTA
Found at i:84888946 original size:40 final size:40
Alignment explanation
Indices: 84888902--84888982 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
84888892 ATTCTATTTG
* * *
84888902 ATTCAGAGTTATCAG-AGTATAAATAGAGGCACATAAGTGC
1 ATTCAGAGGTA-CAGAAGTACAAACAGAGGCACATAAGTGC
* * *
84888942 ATTCAGGGGTACCGAAGTACAAACAGGGGCACATAAGTGC
1 ATTCAGAGGTACAGAAGTACAAACAGAGGCACATAAGTGC
84888982 A
1 A
84888983 ATCAAGGGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (40 bp):
ATTCAGAGGTACAGAAGTACAAACAGAGGCACATAAGTGC
Found at i:84888979 original size:20 final size:20
Alignment explanation
Indices: 84888956--84888994 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
84888946 AGGGGTACCG
*
84888956 AAGTACAAACAGGGGCACAT
1 AAGTACAAACAAGGGCACAT
* *
84888976 AAGTGCAATCAAGGGCACA
1 AAGTACAAACAAGGGCACA
84888995 AACAGGAGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.21, G:0.26, T:0.10
Consensus pattern (20 bp):
AAGTACAAACAAGGGCACAT
Found at i:84889921 original size:5 final size:5
Alignment explanation
Indices: 84889913--84889941 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
84889903 AAATAAAAAA
84889913 TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTAT
84889942 GATTGGTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:84893112 original size:38 final size:35
Alignment explanation
Indices: 84893053--84893170 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
84893043 TCAATCATGC
*
84893053 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
84893092 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
84893123 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
84893154 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
84893171 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:84893114 original size:31 final size:31
Alignment explanation
Indices: 84893076--84893170 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
84893066 CCTTTTCATA
*
84893076 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
84893107 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
84893138 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
84893169 TT
1 TT
84893171 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:84893413 original size:24 final size:24
Alignment explanation
Indices: 84893362--84893528 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
84893352 GCTTTATCAT
* *
84893362 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
84893387 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
84893411 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
84893434 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84893458 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84893482 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84893506 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
84893529 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:84893462 original size:71 final size:71
Alignment explanation
Indices: 84893361--84893528 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
84893351 TGCTTTATCA
*
84893361 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
84893425 AGCCCTTT
64 AGCCCTTT
* * **
84893433 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
84893498 CCCTTT
66 CCCTTT
84893504 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
84893529 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:84893604 original size:20 final size:20
Alignment explanation
Indices: 84893579--84893638 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
84893569 TATGATTACC
84893579 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
84893599 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
84893619 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
84893639 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:84893609 original size:11 final size:11
Alignment explanation
Indices: 84893579--84893633 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
84893569 TATGATTACC
84893579 TCATGTGCATA
1 TCATGTGCATA
*
84893590 TCA--TACATA
1 TCATGTGCATA
84893599 TCATGTGCATA
1 TCATGTGCATA
* *
84893610 TCA--TACATT
1 TCATGTGCATA
84893619 TCATGTGCATA
1 TCATGTGCATA
84893630 TCAT
1 TCAT
84893634 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:84893713 original size:25 final size:25
Alignment explanation
Indices: 84893681--84893728 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84893671 ATACATAAAC
* * *
84893681 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
84893706 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
84893729 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:84896724 original size:16 final size:16
Alignment explanation
Indices: 84896700--84896743 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
84896690 TTTCATCTTT
*
84896700 TACTTAATTAACAT-G
1 TACTTAATTAACATAC
*
84896715 TACGTTAATTATCATAC
1 TAC-TTAATTAACATAC
84896732 TACTTAATTAAC
1 TACTTAATTAAC
84896744 CTTTAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 3 0.12
16 18 0.75
17 3 0.12
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.41
Consensus pattern (16 bp):
TACTTAATTAACATAC
Found at i:84898443 original size:45 final size:45
Alignment explanation
Indices: 84898394--84898556 Score: 165
Period size: 45 Copynumber: 3.7 Consensus size: 45
84898384 TATGTTTTTT
* *
84898394 CGTGTGAGACCATGTCTGGGACGTTGGCATCGATATATGTGGTTA
1 CGTGTAAGACCATGTCTAGGACGTTGGCATCGATATATGTGGTTA
* * * *
84898439 CGTGTAAGACCATGTCTAGGACATCGTCATCG-TAT-T-TGATT-
1 CGTGTAAGACCATGTCTAGGACGTTGGCATCGATATATGTGGTTA
* * ** *
84898480 CGTGTTAGGCCGCGTCTAGGATGTTGGCATCGATATATGTGGTTA
1 CGTGTAAGACCATGTCTAGGACGTTGGCATCGATATATGTGGTTA
* *
84898525 CGTGTAAGACCCTGTCTGGGACAG-TGGCATCG
1 CGTGTAAGACCATGTCTAGGAC-GTTGGCATCG
84898557 TTATGAGGTA
Statistics
Matches: 92, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 24 0.26
42 7 0.08
43 2 0.02
44 7 0.08
45 51 0.55
46 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (45 bp):
CGTGTAAGACCATGTCTAGGACGTTGGCATCGATATATGTGGTTA
Found at i:84899669 original size:18 final size:20
Alignment explanation
Indices: 84899627--84899670 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
84899617 TGTTAGGTAA
84899627 GATTTATGTTTTGGATATAT
1 GATTTATGTTTTGGATATAT
*
84899647 G-TTTATG-TTTGGTTA-AT
1 GATTTATGTTTTGGATATAT
84899664 GATTTAT
1 GATTTAT
84899671 TCTTGTGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.14
18 12 0.55
19 6 0.27
20 1 0.05
ACGTcount: A:0.23, C:0.00, G:0.20, T:0.57
Consensus pattern (20 bp):
GATTTATGTTTTGGATATAT
Found at i:84906096 original size:43 final size:43
Alignment explanation
Indices: 84906047--84906132 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
84906037 TATGTGATTC
* *
84906047 CGATATGTGTTTACGA-GTAAGACC-CTGTCTAGGACAG-TGGCAT
1 CGATATGTGGTTAC-ATATAAGACCAC-GTCTAGGAC-GTTGGCAT
84906090 CGATATGTGGTTACATATAAGACCACGTCTAGGACGTTGGCAT
1 CGATATGTGGTTACATATAAGACCACGTCTAGGACGTTGGCAT
84906133 TGTACGATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 35 0.92
44 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACATATAAGACCACGTCTAGGACGTTGGCAT
Found at i:84912584 original size:27 final size:26
Alignment explanation
Indices: 84912554--84912872 Score: 280
Period size: 27 Copynumber: 11.8 Consensus size: 26
84912544 ATGCCCTCAA
*
84912554 TTTGTAAAATTACTAAAATACCTCTAG
1 TTTGTAAAATTACCAAAATACC-CTAG
*
84912581 TTTGTAAAATTACCAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATA-CCCTAG
84912608 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTGTAAAATTACCAAAATA-CCCTAG
*
84912635 TTTGTGAAATTACCAAAATACCCCT-G
1 TTTGTAAAATTACCAAAATA-CCCTAG
* *** *
84912661 ATTTGTGAAATTATTGAAATACCCTTG
1 -TTTGTAAAATTACCAAAATACCCTAG
* *
84912688 ACTTGTAAAATTACCAAAATACCCCTAA
1 -TTTGTAAAATTACCAAAATA-CCCTAG
* ** * *
84912716 TTTGTGAAATTACTGAAATATCCTTG
1 TTTGTAAAATTACCAAAATACCCTAG
* *
84912742 ACTTGTAAAATTACCAAAATACCCTTGG
1 -TTTGTAAAATTACCAAAATACCC-TAG
** *
84912770 TTTACAAAATTACCAAAATACCCTTGG
1 TTTGTAAAATTACCAAAATACCC-TAG
* *
84912797 TTTGTAAAATTACCGAAATAACCTCAG
1 TTTGTAAAATTACCAAAATACCCT-AG
** *
84912824 TTTGTAAAATTACTGAAATACCCTCG
1 TTTGTAAAATTACCAAAATACCCTAG
**
84912850 ATTTGTAAAATTACTGAAATACC
1 -TTTGTAAAATTACCAAAATACC
84912873 ATCAACTTTT
Statistics
Matches: 246, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.04
27 228 0.93
28 8 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (26 bp):
TTTGTAAAATTACCAAAATACCCTAG
Found at i:84912612 original size:54 final size:54
Alignment explanation
Indices: 84912554--84912872 Score: 338
Period size: 54 Copynumber: 5.9 Consensus size: 54
84912544 ATGCCCTCAA
84912554 TTTGTAAAATTACTAAAATACCTCTAG-TTTGTAAAATTACCAAAATACCCCTGG
1 TTTGTAAAATTACTAAAATACC-CTAGATTTGTAAAATTACCAAAATACCCCTGG
* * *
84912608 TTTGTAAAATTACCAAAATACCCCTAG-TTTGTGAAATTACCAAAATACCCCTGA
1 TTTGTAAAATTACTAAAATA-CCCTAGATTTGTAAAATTACCAAAATACCCCTGG
* * * * * **
84912662 TTTGTGAAATTATTGAAATACCCTTGACTTGTAAAATTACCAAAATACCCCTAA
1 TTTGTAAAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCTGG
* * * * * *
84912716 TTTGTGAAATTACTGAAATATCCTTGACTTGTAAAATTACCAAAATACCCTTGG
1 TTTGTAAAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCTGG
** * * * * * *
84912770 TTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATA-ACCTCAG
1 TTTGTAAAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCT-GG
* * **
84912824 TTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACC
1 TTTGTAAAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACC
84912873 ATCAACTTTT
Statistics
Matches: 225, Mismatches: 36, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
53 7 0.03
54 216 0.96
55 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCTGG
Found at i:84912694 original size:81 final size:82
Alignment explanation
Indices: 84912554--84912872 Score: 340
Period size: 81 Copynumber: 3.9 Consensus size: 82
84912544 ATGCCCTCAA
* * * *
84912554 TTTGTAAAATTACTAAAATACCTCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAAT
1 TTTGTAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAAT
84912618 TACCAAAATACCCCTAG
66 TACCAAAATACCCCTAG
* * *** *
84912635 TTTGTGAAATTACCAAAATACCCCTGA-TTTGTGAAATTATTGAAATACCCTTGACTTGTAAAAT
1 TTTGTAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAAT
*
84912699 TACCAAAATACCCCTAA
66 TACCAAAATACCCCTAG
* ** * * * * **
84912716 TTTGTGAAATTACTGAAATATCCTTGA-CTTGTAAAATTACCAAAATACCCTTGGTTTACAAAAT
1 TTTGTAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAAT
* *
84912780 TACCAAAATACCCTTGG
66 TACCAAAATACCCCTAG
* * * ** *
84912797 TTTGTAAAATTACCGAAATA-ACCTCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTAAAAT
1 TTTGTAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAAT
**
84912861 TACTGAAATACC
66 TACCAAAATACC
84912873 ATCAACTTTT
Statistics
Matches: 195, Mismatches: 41, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
80 3 0.02
81 191 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (82 bp):
TTTGTAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAAT
TACCAAAATACCCCTAG
Found at i:84912980 original size:27 final size:27
Alignment explanation
Indices: 84912948--84913107 Score: 268
Period size: 27 Copynumber: 5.9 Consensus size: 27
84912938 AAAAATATTG
*
84912948 AATACCCTTGTAGGGTAGAATTACCGA
1 AATACCCTTGTAGGGTAGAATTACTGA
*
84912975 AATACCCTTGTAGGGTAGAATTATTGA
1 AATACCCTTGTAGGGTAGAATTACTGA
84913002 AATACCCTTGTAGGGTAGAATTACTGA
1 AATACCCTTGTAGGGTAGAATTACTGA
84913029 AATACCCTTGTAGGGTAGAATTACTGA
1 AATACCCTTGTAGGGTAGAATTACTGA
84913056 AATACCCTTGTAGGGTAGAATTA-TCGA
1 AATACCCTTGTAGGGTAGAATTACT-GA
* *
84913083 GATACCCTTGTAGGGTAAAATTACT
1 AATACCCTTGTAGGGTAGAATTACT
84913108 ATTTTGCCCC
Statistics
Matches: 126, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
26 1 0.01
27 124 0.98
28 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAGAATTACTGA
Found at i:84913351 original size:25 final size:25
Alignment explanation
Indices: 84913310--84913379 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
84913300 AGGAAGTGCT
* *
84913310 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
84913335 AAAAGGGCTTTGTCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
84913360 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
84913380 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:84913392 original size:24 final size:24
Alignment explanation
Indices: 84913309--84913404 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
84913299 GAGGAAGTGC
*
84913309 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* * *
84913334 GAAAAGGGCTTTGTCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
84913358 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
84913382 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
84913405 ATATGATAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
23 5 0.09
24 11 0.19
25 41 0.71
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:84916262 original size:50 final size:50
Alignment explanation
Indices: 84916146--84916331 Score: 230
Period size: 50 Copynumber: 3.7 Consensus size: 50
84916136 TATCTAATCG
* * *
84916146 CATAGTAGCCTGAACTTAGTACTATACATGCGACC-AATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGGTACA
** * *
84916195 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGGTACA
** * * * * *
84916245 TGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-TTATCCGGTACA
84916296 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT
84916332 CACAATAGAT
Statistics
Matches: 113, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
49 32 0.28
50 43 0.38
51 38 0.34
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGGTACA
Found at i:84916321 original size:101 final size:99
Alignment explanation
Indices: 84916148--84916331 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 99
84916138 TCTAATCGCA
* *
84916148 TAGTAGCCTGAACTTAGTACTATACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGAACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
84916213 GTACTACACATGTGACCTAACCATCTGATACATG
66 GTACTACACATGTGACCTAACCATCTGATACATG
* * * * *
84916247 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGAACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
84916312 TAGTACTACACATGTGACCT
64 TAGTACTACACATGTGACCT
84916332 CACAATAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 27 0.36
100 3 0.04
101 46 0.61
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGAACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACATGTGACCTAACCATCTGATACATG
Found at i:84916596 original size:26 final size:26
Alignment explanation
Indices: 84916558--84916609 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
84916548 GGTACAACCC
* *
84916558 ATGTAATAGTAATTTAACATTCAATT
1 ATGTAACAATAATTTAACATTCAATT
**
84916584 ATGTAACAATAATTTGCCATTCAATT
1 ATGTAACAATAATTTAACATTCAATT
84916610 TCACATGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (26 bp):
ATGTAACAATAATTTAACATTCAATT
Found at i:84922010 original size:50 final size:49
Alignment explanation
Indices: 84921889--84922076 Score: 178
Period size: 50 Copynumber: 3.8 Consensus size: 49
84921879 AGACAAGGCT
* * * * * * **
84921889 ATCTGGTACGCGTAGTAGCTTACACTTAGTACTACACATGCGACCAATT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
* *
84921938 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACC
* * **
84921988 ATCTGATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CC
* * * * *
84922039 ATCGGGTACGCATAGTAGCCTGTACTTAGTACTACACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
84922077 TGCAACCTCA
Statistics
Matches: 116, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 39 0.34
50 44 0.38
51 33 0.28
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
Found at i:84922243 original size:81 final size:81
Alignment explanation
Indices: 84922108--84922270 Score: 272
Period size: 81 Copynumber: 2.0 Consensus size: 81
84922098 TCGTATCGTT
*
84922108 TCTATTCCGAAGGCTAAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTC
1 TCTATTCCGAAGACTAAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTC
84922173 CTTTTTCAATTTGCAA
66 CTTTTTCAATTTGCAA
* * * * *
84922189 TCTATTCTGAAGACTCAACTGGGAAATTCTTCACTTTCGAACATGTTACAAATTTATTCATAGTC
1 TCTATTCCGAAGACTAAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTC
84922254 CTTTTTCAATTTGCAA
66 CTTTTTCAATTTGCAA
84922270 T
1 T
84922271 TTAGAACAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.38
Consensus pattern (81 bp):
TCTATTCCGAAGACTAAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTC
CTTTTTCAATTTGCAA
Found at i:84922431 original size:27 final size:27
Alignment explanation
Indices: 84922391--84922444 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
84922381 AGGTACAACC
* *
84922391 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
84922418 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
84922445 TCCCATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:84922773 original size:19 final size:19
Alignment explanation
Indices: 84922749--84922788 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
84922739 TATTTTGGAA
84922749 AAATTACAATTT-TGCCCCT
1 AAATTAC-ATTTATGCCCCT
*
84922768 AAATTACATTTATTCCCCT
1 AAATTACATTTATGCCCCT
84922787 AA
1 AA
84922789 GCTTGTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.38
Consensus pattern (19 bp):
AAATTACATTTATGCCCCT
Found at i:84925066 original size:27 final size:27
Alignment explanation
Indices: 84924998--84925068 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
84924988 CGACTTGTAA
* *
84924998 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
84925025 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
84925052 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
84925069 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:84925075 original size:27 final size:27
Alignment explanation
Indices: 84925052--84925175 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
84925042 CAATTTACAG
84925052 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
84925079 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
84925106 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
84925133 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
84925160 AATTACTAAAATACCC
1 AATTACCAAAATACCC
84925176 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:84925094 original size:54 final size:53
Alignment explanation
Indices: 84925036--84925175 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
84925026 ATTACCGTTT
84925036 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
84925090 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
84925144 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
84925176 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:84925187 original size:81 final size:81
Alignment explanation
Indices: 84925052--84925204 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
84925042 CAATTTACAG
* **
84925052 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
84925117 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
84925133 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
84925196 AATACCCTT
64 AATACCCTT
84925205 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:84925188 original size:27 final size:27
Alignment explanation
Indices: 84925158--84925219 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
84925148 CATGGTTTGA
84925158 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
84925185 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
84925212 AAAATTAC
1 AAAATTAC
84925220 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:84925188 original size:54 final size:54
Alignment explanation
Indices: 84925052--84925202 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
84925042 CAATTTACAG
* ** * * *
84925052 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
84925106 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
84925160 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
84925203 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:84925872 original size:28 final size:28
Alignment explanation
Indices: 84925839--84925934 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
84925829 GCGTAGATCA
84925839 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
84925867 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
84925895 CGAAATTACCCCTAAATAG-AAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
84925922 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
84925935 GGGTTTAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
25 3 0.05
26 8 0.12
27 9 0.14
28 44 0.69
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:84929209 original size:27 final size:27
Alignment explanation
Indices: 84929186--84929309 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
84929176 CAATTTACAG
84929186 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
84929213 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
84929240 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
84929267 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
84929294 AATTACTAAAATACCC
1 AATTACCAAAATACCC
84929310 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:84929244 original size:54 final size:54
Alignment explanation
Indices: 84929186--84929309 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
84929176 CAATTTACAG
* * *
84929186 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
* *
84929240 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
84929294 AATTACTAAAATACCC
1 AATTACTAAAATACCC
84929310 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
Found at i:84929278 original size:81 final size:81
Alignment explanation
Indices: 84929186--84929338 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
84929176 CAATTTACAG
* **
84929186 AATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTACTAA
1 AATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTACTAA
84929249 AATACCCTTTGTTTATAA
64 AATACCCTTTGTTTATAA
* * *
84929267 AATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTGAAA
1 AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
84929332 TACCCTT
66 TACCCTT
84929339 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:84929322 original size:27 final size:27
Alignment explanation
Indices: 84929292--84929353 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
84929282 CATGGTTTGA
84929292 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
84929319 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
84929346 AAAATTAC
1 AAAATTAC
84929354 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:84929322 original size:54 final size:54
Alignment explanation
Indices: 84929186--84929336 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
84929176 CAATTTACAG
* ** * * *
84929186 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
84929240 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
84929294 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
84929337 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:84930005 original size:28 final size:28
Alignment explanation
Indices: 84929973--84930055 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
84929963 CGTAGATCAC
84929973 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
84930001 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
* *
84930029 GAAATTACCCCTAAATAGTAAAATTAC
1 GAAATTACCCCTAAAGAGCAAAATTAC
84930056 CAATATACCC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:84932530 original size:34 final size:35
Alignment explanation
Indices: 84932486--84932567 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 35
84932476 TTAGCCCCTT
* **
84932486 TTTCAATAACAGTAT-CAGTTTGGGCCTGAGCCCA
1 TTTCAGTAACAGTATGCAGCCTGGGCCTGAGCCCA
* *
84932520 TTTCAGTAACAG-ATGCAGCCTGGGCCTTATCCCA
1 TTTCAGTAACAGTATGCAGCCTGGGCCTGAGCCCA
*
84932554 TCTCAGT-ACAGTAT
1 TTTCAGTAACAGTAT
84932568 ACAAACAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
33 6 0.15
34 34 0.85
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (35 bp):
TTTCAGTAACAGTATGCAGCCTGGGCCTGAGCCCA
Found at i:84936714 original size:48 final size:48
Alignment explanation
Indices: 84936650--84936775 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
84936640 CAAGGTAAAT
* * *
84936650 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
84936698 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
84936746 AGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
84936776 TTGTGCAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:84936801 original size:48 final size:47
Alignment explanation
Indices: 84936661--84936804 Score: 173
Period size: 48 Copynumber: 3.0 Consensus size: 47
84936651 TATATATGTG
* * *
84936661 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
*
84936709 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * * *
84936757 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
84936805 GTGGCCGAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
48 81 0.98
49 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:84936984 original size:37 final size:37
Alignment explanation
Indices: 84936934--84937023 Score: 135
Period size: 37 Copynumber: 2.4 Consensus size: 37
84936924 GGAAATATAT
* *
84936934 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTCTG
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
*
84936971 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
*
84937008 TCCGGGTTAAAACCCG
1 TCCGGG-TAAGACCCG
84937024 CAGGCTTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
37 40 0.83
38 8 0.17
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
Found at i:84939355 original size:40 final size:40
Alignment explanation
Indices: 84939248--84939594 Score: 407
Period size: 40 Copynumber: 8.7 Consensus size: 40
84939238 CGGATGATAA
* *
84939248 CCGGGCTAAGTCCCGAA-GGCAATT-GTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGGC-ATTCGTGCTAGTGA-TATA-T
*
84939288 CCGGGCTAAG-CCCGAA-GGCAATCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
* * *
84939326 CCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
* ** *
84939366 CCGGGCTAAGTCTCGAAGGGCATTCGTGCCGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
* * *
84939406 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
* ** *
84939446 CCGGGCTAAGTCCCGAAGGGCATTCATGCCGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
* *
84939486 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
* ** *
84939526 CCAGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
* *
84939566 CCGGGCTAAATCACGAAGGGCATTCGTGC
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGC
84939595 CGGTGATGTG
Statistics
Matches: 260, Mismatches: 43, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
38 14 0.05
39 24 0.09
40 222 0.85
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATAT
Found at i:84939420 original size:80 final size:80
Alignment explanation
Indices: 84939248--84939603 Score: 497
Period size: 80 Copynumber: 4.5 Consensus size: 80
84939238 CGGATGATAA
* * *
84939248 CCGGGCTAAGTCCCGAAG-GCAATT-GTGCGAGTTACT-AATTCCGGGCTAAG-CCCGAA-GGCA
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGTGA-TGTA-TCCGGGCTAAGTCCCGAAGGGCA
* ** *
84939308 ATCGTGCTAGTGATATAT
63 TTCGTGCCGGTGTTATAT
* *
84939326 CCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGGGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGGGCATTC
84939391 GTGCCGGTGTTATAT
66 GTGCCGGTGTTATAT
*
84939406 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTTTCCGGGCTAAGTCCCGAAGGGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGGGCATTC
*
84939471 ATGCCGGTGTTATAT
66 GTGCCGGTGTTATAT
*
84939486 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCCCGAAGGGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGGGCATTC
84939551 GTGCCGGTGTTATAT
66 GTGCCGGTGTTATAT
* * * **
84939566 CCGGGCTAAATCACGAAGGGCATTCGTGCCGGTGATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
84939604 GTATTCGGGC
Statistics
Matches: 252, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
78 32 0.13
79 16 0.06
80 204 0.81
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGGGCATTC
GTGCCGGTGTTATAT
Found at i:84943022 original size:28 final size:29
Alignment explanation
Indices: 84942955--84943055 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
84942945 ATAGTGAATC
*
84942955 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
84942984 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
84943012 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
84943042 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84943056 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:84946485 original size:48 final size:48
Alignment explanation
Indices: 84946421--84946546 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
84946411 CAAGGTAAAT
* * * *
84946421 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAAAATGTATGAG
*
84946469 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAAAATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAAAATGTATGAG
* *
84946517 AGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
84946547 TTGTGCAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAAAATGTATGAG
Found at i:84946572 original size:48 final size:47
Alignment explanation
Indices: 84946432--84946575 Score: 164
Period size: 48 Copynumber: 3.0 Consensus size: 47
84946422 TATATATGTG
* * *
84946432 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-AAATGTATGAGATGTGTATATT
*
84946480 TGGTAAAGCCAAATGGCTAATATGAAAAATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AAAATGTATGAGATG-TGTATATT
* * * * *
84946528 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AAAATGTATGAGATGTGTATATT
84946576 GTGGCCGAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
48 80 0.98
49 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAAAATGTATGAGATGTGTATATT
Found at i:84946755 original size:37 final size:37
Alignment explanation
Indices: 84946705--84946785 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
84946695 GGAAATATAT
* *
84946705 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTCTG
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
*
84946742 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
84946779 TCCGGGT
1 TCCGGGT
84946786 TAAAACCCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
Found at i:84951987 original size:50 final size:50
Alignment explanation
Indices: 84951868--84952079 Score: 183
Period size: 50 Copynumber: 4.2 Consensus size: 50
84951858 ATTGTGAGAA
* * * *** * *
84951868 CACATATGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* *
84951920 TACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * *
84951970 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * * * *
84952021 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
*
84952071 CACGTGTGT
1 CACATGTGT
84952080 TGTAACACCC
Statistics
Matches: 128, Mismatches: 29, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
49 1 0.01
50 54 0.42
51 38 0.30
52 35 0.27
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:84952904 original size:27 final size:27
Alignment explanation
Indices: 84952874--84952997 Score: 142
Period size: 27 Copynumber: 4.6 Consensus size: 27
84952864 TATAGGGTAG
* **
84952874 AATTACTAAAATACCCTTGGTTTAAAA
1 AATTACCAAAATACCCTTGGTTTGTAA
84952901 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
84952928 AATTACCAAAATACACC-TAGTTTGTAA
1 AATTACCAAAATAC-CCTTGGTTTGTAA
** * **
84952955 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
84952982 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
84952998 CTAATTTATA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.02
27 78 0.95
28 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:84953028 original size:54 final size:54
Alignment explanation
Indices: 84952894--84953013 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
84952884 ATACCCTTGG
* ** * ** *
84952894 TTTAAAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACACCTAG
1 TTTATAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACACCTAA
* * *
84952948 TTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTAA
1 TTTATAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACACCTAA
*
84953002 TTTATAGAATTA
1 TTTATAAAATTA
84953014 TCGTTTTACC
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (54 bp):
TTTATAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACACCTAA
Found at i:84953073 original size:27 final size:27
Alignment explanation
Indices: 84953038--84953122 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
84953028 ATTTACAAAG
84953038 TTACTGAAATACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* *
84953065 TTA-TCGAAATACCCCTGTAGGTTAGAA
1 TTACT-GAAATACCCTTGTAGGGTAGAA
* * * *
84953092 TTACTGAGATACCTTTGTGGGGTAAAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
84953119 TTAC
1 TTAC
84953123 CATTTTGCCC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 46 0.96
28 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (27 bp):
TTACTGAAATACCCTTGTAGGGTAGAA
Found at i:84953552 original size:22 final size:22
Alignment explanation
Indices: 84953527--84953575 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
84953517 ACGGCTTTGC
84953527 GCCAACCT-ACATATGGCTCTGT
1 GCCAACCTGA-ATATGGCTCTGT
* *
84953549 GCCAACCTGATTATGGCTGTGT
1 GCCAACCTGAATATGGCTCTGT
84953571 GCCAA
1 GCCAA
84953576 ACGTATTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (22 bp):
GCCAACCTGAATATGGCTCTGT
Found at i:84953822 original size:27 final size:26
Alignment explanation
Indices: 84953736--84953841 Score: 104
Period size: 27 Copynumber: 4.0 Consensus size: 26
84953726 TCTATTAAGC
* * *
84953736 GGCTTTGCCACATTATCTGTTTCTGGT
1 GGCTCTGCCACAATATCT-ATTCTGGT
* *
84953763 GGCTATGCCACAAATATGTATTCTGGT
1 GGCTCTGCCAC-AATATCTATTCTGGT
84953790 GGCTCTGCCACAATATCTATATCTGGT
1 GGCTCTGCCACAATATCTAT-TCTGGT
* ** *
84953817 GACTCTGTTACAATATCTGTTCTGG
1 GGCTCTGCCACAATATCTATTCTGG
84953842 CAGCCATGCT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.19
27 49 0.73
28 5 0.07
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
GGCTCTGCCACAATATCTATTCTGGT
Found at i:84953968 original size:6 final size:6
Alignment explanation
Indices: 84953959--84954145 Score: 109
Period size: 6 Copynumber: 30.3 Consensus size: 6
84953949 TTGCATTCAC
*
84953959 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
** *
84954008 ATTCTG -TTACCAA ATAT-TG ATTCTG ATTCTA ATTCTG ATTCTG -TTACCTG
1 ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
84954058 ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TCACTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* * * *
84954108 ATTCTA ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
84954146 AATGTTTCTT
Statistics
Matches: 141, Mismatches: 21, Indels: 38
0.70 0.10 0.19
Matches are distributed among these distances:
5 11 0.08
6 111 0.79
7 12 0.09
8 6 0.04
9 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:84953990 original size:25 final size:25
Alignment explanation
Indices: 84953959--84954124 Score: 119
Period size: 25 Copynumber: 6.7 Consensus size: 25
84953949 TTGCATTCAC
84953959 ATTCTGATTCTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTATTACCTG
*
84953984 ATACTGATTCTGATTCTGATT--CTG
1 ATTCTGATTCTGATTCT-ATTACCTG
**
84954008 ATTCTG-TTACCAAATAT-TGATT--CTG
1 ATTCTGATT--CTGAT-TCT-ATTACCTG
* *
84954033 ATTCTAATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTATTACCTG
* * * *
84954058 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTATTACCTG
* * *
84954083 ATTCTGATTCTGATTCTGTCACTTG
1 ATTCTGATTCTGATTCTATTACCTG
* *
84954108 ATTCTAATTCTAATTCT
1 ATTCTGATTCTGATTCT
84954125 CATTTTGATT
Statistics
Matches: 116, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.04
24 12 0.10
25 93 0.80
26 6 0.05
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTATTACCTG
Found at i:84954009 original size:37 final size:37
Alignment explanation
Indices: 84953959--84954075 Score: 189
Period size: 37 Copynumber: 3.2 Consensus size: 37
84953949 TTGCATTCAC
*
84953959 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
** *
84953996 ATTCTGATTCTGATTCTGTTACCAAATATTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
*
84954033 ATTCTAATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
84954070 ATTCTG
1 ATTCTG
84954076 TCACCTAATT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
Found at i:84956077 original size:27 final size:27
Alignment explanation
Indices: 84956047--84956224 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
84956037 TGTAGGGTAG
* **
84956047 AATTACTAAAATACCCTTGGTTTAAAA
1 AATTACCAAAATACCCTTGGTTTGTAA
84956074 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
84956101 AATTACCAAAATACACC-TAGTTTGTAA
1 AATTACCAAAATAC-CCTTGGTTTGTAA
*** *
84956128 AATTACCAAAATACCCTCAATTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
* ***
84956155 AATTACTAAAATACCCTTGACCTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
** * **
84956182 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
84956209 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
84956225 CTAATTTATA
Statistics
Matches: 130, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 126 0.97
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:84956112 original size:54 final size:54
Alignment explanation
Indices: 84956047--84956224 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
84956037 TGTAGGGTAG
* ** * *
84956047 AATTACTAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCGATTTGTAA
* * *
84956101 AATTACCAAAATACACC-TAGTTTGTAAAATTACCAAAATACCCTCAATTTGTGA
1 AATTACCAAAATAC-CCTTGGTTTGTAAAATTACCAAAATACCCTCGATTTGTAA
* *** ** *
84956155 AATTACTAAAATACCCTTGACCTGTAAAATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCGATTTGTAA
*
84956209 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
84956225 CTAATTTATA
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.02
54 98 0.96
55 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCGATTTGTAA
Found at i:84956231 original size:81 final size:81
Alignment explanation
Indices: 84956047--84956240 Score: 212
Period size: 81 Copynumber: 2.4 Consensus size: 81
84956037 TGTAGGGTAG
* *** * ***
84956047 AATTACTAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCTTGACCTGTAAAATTACCAAAA
*
84956112 TACACCTAGTTTGTAA
66 TACACCTAGCTTGTAA
* * * **
84956128 AATTACCAAAATACCCTCAATTTGTGAAATTACTAAAATACCCTTGACCTGTAAAATTACTGAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCTTGACCTGTAAAATTACCAAAA
*
84956193 TAC-CCTCGACTTGTAA
66 TACACCTAG-CTTGTAA
*
84956209 AATTACCAAAGTACCC-CTAATTTATAAAATTA
1 AATTACCAAAATACCCTC-AATTTATAAAATTA
84956241 TTGTTTTACC
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
80 5 0.05
81 88 0.95
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCTTGACCTGTAAAATTACCAAAA
TACACCTAGCTTGTAA
Found at i:84956251 original size:81 final size:78
Alignment explanation
Indices: 84956047--84956279 Score: 189
Period size: 81 Copynumber: 2.9 Consensus size: 78
84956037 TGTAGGGTAG
* *** * * * * *
84956047 AATTACTAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACTAAAATACCC-TCG-ATGTAAAATTACTAAAA
*
84956112 TACACCTAGTTTGTAA
64 TAC-CCTAGCTTGTAA
* * * *
84956128 AATTACCAAAATACCCTCAATTTGTGAAATTACTAAAATACCCTTGACCTGTAAAATTACTGAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACTAAAATACCCTCGA--TGTAAAATTACTAAAA
*
84956193 TACCCTCGACTTGTAA
64 TACCCTAG-CTTGTAA
* * ****
84956209 AATTACCAAAGTACCC-CTAATTTATAAAATTATTGTTTTACCCTCGATGTACAAAGTTACTAAA
1 AATTACCAAAATACCCTC-AATTTATAAAATTACTAAAATACCCTCGATGTA-AAA-TTACTAAA
84956273 ATACCCT
63 ATACCCT
84956280 TATAGGGTAG
Statistics
Matches: 122, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
79 4 0.03
80 10 0.08
81 108 0.89
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (78 bp):
AATTACCAAAATACCCTCAATTTATAAAATTACTAAAATACCCTCGATGTAAAATTACTAAAATA
CCCTAGCTTGTAA
Found at i:84956301 original size:27 final size:27
Alignment explanation
Indices: 84956265--84956334 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
84956255 ATGTACAAAG
*
84956265 TTACTAAAATACCCTTATAGGGTAGAA
1 TTACTGAAATACCCTTATAGGGTAGAA
* * *
84956292 TTA-TCGAAATACCCCTGTAGGTTAGAA
1 TTACT-GAAATACCCTTATAGGGTAGAA
*
84956319 TTACTGAGATACCCTT
1 TTACTGAAATACCCTT
84956335 GCGGGGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (27 bp):
TTACTGAAATACCCTTATAGGGTAGAA
Found at i:84956790 original size:22 final size:22
Alignment explanation
Indices: 84956738--84956802 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
84956728 GCCAATTATT
* *
84956738 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
84956760 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
84956782 TTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
84956803 ACATATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:84956991 original size:27 final size:27
Alignment explanation
Indices: 84956961--84957064 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
84956951 ATTCTGTTAA
* *
84956961 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTCTGCCACAATATCTATTTCTG
*
84956988 GTGGCTATGCCACAAATATCTA-TTCTG
1 GTGGCTCTGCCAC-AATATCTATTTCTG
* *
84957015 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTATTTCTG
* *
84957042 GTGACTCTGTCACAATATCTATT
1 GTGGCTCTGCCACAATATCTATT
84957065 CAAGCAGCCA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 7 0.11
27 52 0.79
28 7 0.11
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATTTCTG
Found at i:84957194 original size:6 final size:6
Alignment explanation
Indices: 84957185--84957356 Score: 129
Period size: 6 Copynumber: 27.8 Consensus size: 6
84957175 TTGCATTTAC
* * * *
84957185 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTA ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
84957235 ATTCTG ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * *
84957284 ATTCTG ATTCT- ATCACCTA ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
84957333 -TCCCCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCT
84957357 CATTTTAATT
Statistics
Matches: 133, Mismatches: 18, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
5 10 0.08
6 103 0.77
7 12 0.09
8 8 0.06
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:84957219 original size:25 final size:25
Alignment explanation
Indices: 84957188--84957320 Score: 129
Period size: 25 Copynumber: 5.6 Consensus size: 25
84957178 CATTTACATT
84957188 CTGATTCTGATTCTATTACCTGATA
1 CTGATTCTGATTCTATTACCTGATA
* *
84957213 CTAATTCTGATTCTATCACC---TA
1 CTGATTCTGATTCTATTACCTGATA
* *
84957235 ---ATTCTGATTTTGATT--CTGATT
1 CTGATTCTGATTCT-ATTACCTGATA
*
84957256 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTATTACCTGATA
* * *
84957281 CTGATTCTGATTCTATCACCTAATT
1 CTGATTCTGATTCTATTACCTGATA
84957306 CTGATTCTGATTCTA
1 CTGATTCTGATTCTA
84957321 ATTCTGATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 18
0.74 0.10 0.15
Matches are distributed among these distances:
18 1 0.01
19 10 0.11
20 2 0.02
21 1 0.01
22 2 0.02
23 2 0.02
24 10 0.11
25 59 0.68
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTATTACCTGATA
Found at i:84957257 original size:37 final size:37
Alignment explanation
Indices: 84957207--84957356 Score: 145
Period size: 37 Copynumber: 4.2 Consensus size: 37
84957197 ATTCTATTAC
* *
84957207 CTGATACTAATTCTGATTCTATCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* *
84957244 TTGATTCTGATTCTGA---T-T---CTGATTCTG-TT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
*
84957273 ACCTGATACTGATTCTGATTCTATCACCTAATTCTGATT
1 --CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* * * *
84957312 CTGATTCTAATTCTGATTCTGTCCCCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
84957349 CTGATTCT
1 CTGATTCT
84957357 CATTTTAATT
Statistics
Matches: 91, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
29 2 0.02
30 8 0.09
31 14 0.15
33 1 0.01
34 2 0.02
35 1 0.01
37 53 0.58
38 8 0.09
39 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
Found at i:84957294 original size:68 final size:68
Alignment explanation
Indices: 84957185--84957332 Score: 260
Period size: 68 Copynumber: 2.2 Consensus size: 68
84957175 TTGCATTTAC
*
84957185 ATTCTGATTCTGATTCTATTACCTGATACTAATTCTGATTCTATCACCTAATTCTGATTTTGATT
1 ATTCTGATTCTGATTCTATTACCTGATACTAATTCTGATTCTATCACCTAATTCTGATTCTGATT
*
84957250 CTG
66 CTA
* *
84957253 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATCACCTAATTCTGATTCTGATT
1 ATTCTGATTCTGATTCTATTACCTGATACTAATTCTGATTCTATCACCTAATTCTGATTCTGATT
84957318 CTA
66 CTA
84957321 ATTCTGATTCTG
1 ATTCTGATTCTG
84957333 TCCCCTGATT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 76 1.00
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (68 bp):
ATTCTGATTCTGATTCTATTACCTGATACTAATTCTGATTCTATCACCTAATTCTGATTCTGATT
CTA
Found at i:84957341 original size:31 final size:29
Alignment explanation
Indices: 84957245--84957356 Score: 109
Period size: 31 Copynumber: 3.7 Consensus size: 29
84957235 ATTCTGATTT
84957245 TGATTCTGATTCTGATTCTGATTCTGTTACC
1 TGATTCTGATTCTGATTCTGATTCTG-T-CC
* * * *
84957276 TGATACTGATTCTGATTCT-ATCACCTAATTC
1 TGATTCTGATTCTGATTCTGAT--TCT-GTCC
*
84957307 TGATTCTGATTCTAATTCTGATTCTGTCCCC
1 TGATTCTGATTCTGATTCTGATTCTGT--CC
84957338 TGATTCTGATTCTGATTCT
1 TGATTCTGATTCTGATTCT
84957357 CATTTTAATT
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
29 1 0.02
30 4 0.06
31 55 0.85
32 5 0.08
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (29 bp):
TGATTCTGATTCTGATTCTGATTCTGTCC
Found at i:84958152 original size:49 final size:50
Alignment explanation
Indices: 84958019--84958209 Score: 271
Period size: 49 Copynumber: 3.9 Consensus size: 50
84958009 TTGTGGTGTT
*
84958019 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTC
* * ** *
84958069 ACATGTGCAGTACTAAGTGCAGGCTACTACGTGTATGAGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTC
*
84958119 AC-TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-GGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTC
* *
84958167 GCATGTGTAGTACTAAGT-CTAGGCTACTATGCGTACCAGATAG
1 ACATGTGTAGTACTAAGTGC-AGGCTACTATGTGTACCAGATAG
84958210 CTTTGGTTAC
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
48 6 0.05
49 73 0.58
50 46 0.37
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTC
Found at i:84958424 original size:16 final size:15
Alignment explanation
Indices: 84958403--84958432 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
84958393 GAATGGAGTA
84958403 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
84958419 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
84958433 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:84963451 original size:37 final size:36
Alignment explanation
Indices: 84963401--84963487 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
84963391 TGCGAAGTCT
84963401 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
84963437 GTACCCGGACATAATCTCCACACGTAGTCATTGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
84963474 TCACCCGGAACATA
1 T-ACCCGG-ACATA
84963488 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:84963606 original size:51 final size:51
Alignment explanation
Indices: 84963536--84963657 Score: 199
Period size: 51 Copynumber: 2.4 Consensus size: 51
84963526 ATTCACATTA
* * * *
84963536 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCG
*
84963587 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCG
84963638 GCCATTAGGCCTTATCACAT
1 GCCATTAGGCCTTATCACAT
84963658 TCATCACATC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (51 bp):
GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCG
Found at i:84963658 original size:31 final size:31
Alignment explanation
Indices: 84963621--84963688 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
84963611 ATATACATTT
84963621 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
*
84963652 TCACATTCATCACATCGGTCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
84963683 TCACAT
1 TCACAT
84963689 ATATATACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (31 bp):
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:84963711 original size:80 final size:81
Alignment explanation
Indices: 84963570--84963737 Score: 293
Period size: 80 Copynumber: 2.1 Consensus size: 81
84963560 ATATACACTT
* *
84963570 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACA
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATATACACTTTCACATTCATCACA
84963635 TCGGCCATTAGGCCTTA
65 TCGGCCATTAGGCCTTA
*
84963652 TCACATTCATCACATCGGTCATTAGGCCTTATCAC-ATATATATACACTTTCACATTCATCACAT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATATACACTTTCACATTCATCACAT
84963716 CGGCCATTAGGCCTTA
66 CGGCCATTAGGCCTTA
84963732 TCACAT
1 TCACAT
84963738 ATATATATCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
80 50 0.60
82 33 0.40
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (81 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTA
Found at i:84966546 original size:40 final size:40
Alignment explanation
Indices: 84966462--84966642 Score: 145
Period size: 40 Copynumber: 4.5 Consensus size: 40
84966452 GAATCACGTA
* * * ** * *
84966462 CCTTCGGGATTTA-ACCGGATATAGCGACTCGCTCGATTG
1 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAATTG
* * *
84966501 TCTTCGGGACA-TAGCCCGG-TTATAGTGATTCGCACAATTG
1 CCTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAATTG
*
84966541 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAATTG
* * **
84966581 CCTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAG
1 CCTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAATTG
* *
84966622 CCTTCGGGACTTAACCCGGAT
1 CCTTCGGGAATTAGCCCGGAT
84966643 ACCATTCGAA
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 13 0.11
40 75 0.64
41 29 0.25
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAATTG
Found at i:84966629 original size:41 final size:39
Alignment explanation
Indices: 84966540--84966642 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 39
84966530 TCGCACAATT
* *
84966540 GCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAAT
1 GCCTTCGGGAATTA-CCCGGATTTAGTAACTAGCACAAAA
*
84966580 GCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAA
1 GCCTTCGGGAATT-ACCCGGATTTAGTAAC-TAGCACAAAA
*
84966621 GCCTTCGGGACTTAACCCGGAT
1 GCCTTCGGGAATT-ACCCGGAT
84966643 ACCATTCGAA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
40 27 0.48
41 29 0.52
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGAATTACCCGGATTTAGTAACTAGCACAAAA
Found at i:84967196 original size:25 final size:25
Alignment explanation
Indices: 84967159--84967210 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
84967149 AAGGGATTTA
*
84967159 CACACGCACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
84967184 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
84967209 CA
1 CA
84967211 TTTTTACACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:84967448 original size:40 final size:40
Alignment explanation
Indices: 84967386--84967617 Score: 392
Period size: 40 Copynumber: 5.8 Consensus size: 40
84967376 CCAGCATGAT
* * *
84967386 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84967426 TGCTCTTTGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84967466 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84967506 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84967546 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
84967586 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
84967618 CTCAATTCTC
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 184 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:84971075 original size:78 final size:80
Alignment explanation
Indices: 84970933--84971116 Score: 200
Period size: 78 Copynumber: 2.3 Consensus size: 80
84970923 TCGAATGATG
* * *
84970933 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
84970998 GTGCGAGATAATAAA
66 GTGCGAGATAATAAA
* **
84971013 TCCGGGCTAAG-CCCG-AGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
84971074 TCGTGCGAG-TCACTATAA
64 TCGTGCGAGAT-AATA-AA
**
84971092 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
84971117 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
77 2 0.02
78 50 0.56
79 17 0.19
80 20 0.22
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGATAATAAA
Found at i:84971096 original size:40 final size:40
Alignment explanation
Indices: 84970934--84971124 Score: 160
Period size: 40 Copynumber: 4.8 Consensus size: 40
84970924 CGAATGATGT
* * * *
84970934 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * *
84970974 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGAT-AATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TCACTAAAC
* *
84971014 CCGGGCTAAG-CCCG-AGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
84971052 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
84971092 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
84971125 GTTATATCCG
Statistics
Matches: 122, Mismatches: 21, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 27 0.22
39 7 0.06
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:84979113 original size:79 final size:82
Alignment explanation
Indices: 84978973--84979157 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
84978963 TCGAATGATG
* * *
84978973 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
84979037 CGTGCGAGAT-AATA-AA
66 CGTGCGAG-TCAATATAA
* **
84979053 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
84979115 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
84979133 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84979158 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:84979137 original size:40 final size:40
Alignment explanation
Indices: 84978974--84979165 Score: 169
Period size: 40 Copynumber: 4.8 Consensus size: 40
84978964 CGAATGATGT
* * * *
84978974 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * *
84979014 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGAT-AATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TCACTAAAC
* *
84979054 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
84979093 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
84979133 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
84979166 GTTATATCCG
Statistics
Matches: 124, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
39 31 0.25
40 82 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:84979188 original size:79 final size:79
Alignment explanation
Indices: 84978973--84979190 Score: 176
Period size: 79 Copynumber: 2.7 Consensus size: 79
84978963 TCGAATGATG
* * * * ** *
84978973 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
84979036 TCGTGCGAGATAATAAA
63 TCGTGCGAGATAATAAA
* * * *
84979053 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
84979118 TGCGAG-TCACTATAA
66 TGCGAGAT-AATA-AA
** * ** * *
84979133 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
84979191 TACGTGATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
78 1 0.01
79 68 0.60
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGATAATAAA
Found at i:84980972 original size:53 final size:53
Alignment explanation
Indices: 84980899--84981053 Score: 264
Period size: 53 Copynumber: 3.0 Consensus size: 53
84980889 GCTTTACCAC
*
84980899 ATATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACAT
1 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
84980952 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--
1 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
84981003 --ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
84981054 TCATCACATC
Statistics
Matches: 97, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
49 48 0.49
53 49 0.51
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.34
Consensus pattern (53 bp):
ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Done.