Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 273 of 438
Found at i:84981026 original size:49 final size:49
Alignment explanation
Indices: 84980901--84981053 Score: 252
Period size: 49 Copynumber: 3.0 Consensus size: 49
84980891 TTTACCACAT
*
84980901 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84980950 ATATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ----ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84981003 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84981052 AT
1 AT
84981054 TCATCACATC
Statistics
Matches: 97, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
49 50 0.52
53 47 0.48
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:84981054 original size:31 final size:31
Alignment explanation
Indices: 84981017--84981084 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
84981007 ATATACACTT
*
84981017 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCGTA
84981048 TCACATTCATCACATCGGCCATTAGGCCGTA
1 TCACATTCATCACATCGGCCATTAGGCCGTA
84981079 TCACAT
1 TCACAT
84981085 ATATATACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.28
Consensus pattern (31 bp):
TCACATTCATCACATCGGCCATTAGGCCGTA
Found at i:84981058 original size:80 final size:80
Alignment explanation
Indices: 84980968--84981133 Score: 323
Period size: 80 Copynumber: 2.1 Consensus size: 80
84980958 ATATACATTT
*
84980968 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCGTATCACATATATATACACTTTCACATTCATCACATC
84981033 GGCCATTAGGCCTTA
66 GGCCATTAGGCCTTA
84981048 TCACATTCATCACATCGGCCATTAGGCCGTATCACATATATATACACTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCGTATCACATATATATACACTTTCACATTCATCACATC
84981113 GGCCATTAGGCCTTA
66 GGCCATTAGGCCTTA
84981128 TCACAT
1 TCACAT
84981134 ATATATATCT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (80 bp):
TCACATTCATCACATCGGCCATTAGGCCGTATCACATATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTA
Found at i:84984641 original size:46 final size:46
Alignment explanation
Indices: 84984583--84984759 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
84984573 ATTTGGGCAT
84984583 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * * *
84984629 GTCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GC
* *
84984676 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* *
84984722 GCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84984760 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:84986948 original size:27 final size:26
Alignment explanation
Indices: 84986864--84987099 Score: 264
Period size: 27 Copynumber: 8.9 Consensus size: 26
84986854 TAAGACCCTG
*
84986864 GTTTGTAAAATTATCGAAATA-CCCCT
1 GTTTGTAAAATTA-CGAAATACCCCCA
*
84986890 GATTT-TAAAATTACCAAATA-CCCCA
1 G-TTTGTAAAATTACGAAATACCCCCA
*
84986915 GTTTGTAAAATTATCAAAATACCCCCA
1 GTTTGTAAAATTA-CGAAATACCCCCA
84986942 GTTTGTAAAATTACTGAAATACCCCCA
1 GTTTGTAAAATTAC-GAAATACCCCCA
* *
84986969 ATTTGTACAATTACTGAAATA-CCCCA
1 GTTTGTAAAATTAC-GAAATACCCCCA
**
84986995 GTTTGTAAAATTACCGAAATACCCCTG
1 GTTTGTAAAATTA-CGAAATACCCCCA
* *
84987022 GTTTGTAAAATTGTCGAAATACCACCA
1 GTTTGTAAAATT-ACGAAATACCCCCA
* *
84987049 ATTTGTAAAATTACTGAAATACCCCCG
1 GTTTGTAAAATTAC-GAAATACCCCCA
84987076 GTTTGTAAAATTATCGAAATACCC
1 GTTTGTAAAATTA-CGAAATACCC
84987100 TTATAGTGTA
Statistics
Matches: 181, Mismatches: 19, Indels: 19
0.83 0.09 0.09
Matches are distributed among these distances:
24 3 0.02
25 19 0.10
26 39 0.22
27 119 0.66
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (26 bp):
GTTTGTAAAATTACGAAATACCCCCA
Found at i:84986981 original size:54 final size:54
Alignment explanation
Indices: 84986864--84987126 Score: 306
Period size: 54 Copynumber: 4.9 Consensus size: 54
84986854 TAAGACCCTG
* *
84986864 GTTTGTAAAATTATCGAAATA-CCCCTGATTT-TAAAATTAC-CAAATA-CCCCA
1 GTTTGTAAAATTATCGAAATACCCCCAG-TTTGTAAAATTACTGAAATACCCCCA
*
84986915 GTTTGTAAAATTATCAAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCA
1 GTTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCA
* * * **
84986969 ATTTGTACAATTA-CTGAAATA-CCCCAGTTTGTAAAATTACCGAAATACCCCTG
1 GTTTGTAAAATTATC-GAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCA
* * * *
84987022 GTTTGTAAAATTGTCGAAATACCACCAATTTGTAAAATTACTGAAATACCCCCG
1 GTTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCA
** * *
84987076 GTTTGTAAAATTATCGAAATACCCTTA-TAGTGTAAAATTATTGAAATACCC
1 GTTTGTAAAATTATCGAAATACCCCCAGT-TTGTAAAATTACTGAAATACCC
84987127 TTGTAGTGTA
Statistics
Matches: 182, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
51 23 0.13
52 14 0.08
53 52 0.29
54 93 0.51
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
GTTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCA
Found at i:84987007 original size:80 final size:80
Alignment explanation
Indices: 84986859--84987126 Score: 346
Period size: 80 Copynumber: 3.4 Consensus size: 80
84986849 GTCGTTAAGA
* ** *
84986859 CCCTGGTTTGTAAAATTATCGAAATACCCCTGATTT-TAAAATTAC-CAAATACCCCAGTTTGTA
1 CCCTAGTTTGTAAAATTATCGAAATACCCCCAATTTGTAAAATTACTGAAATACCCCAGTTTGTA
*
84986922 AAATTATCAAAATAC
66 AAATTATCGAAATAC
* *
84986937 CCCCAGTTTGTAAAATTA-CTGAAATACCCCCAATTTGTACAATTACTGAAATACCCCAGTTTGT
1 CCCTAGTTTGTAAAATTATC-GAAATACCCCCAATTTGTAAAATTACTGAAATACCCCAGTTTGT
*
84987001 AAAATTACCGAAATAC
65 AAAATTATCGAAATAC
* * * *
84987017 CCCTGGTTTGTAAAATTGTCGAAATACCACCAATTTGTAAAATTACTGAAATACCCCCGGTTTGT
1 CCCTAGTTTGTAAAATTATCGAAATACCCCCAATTTGTAAAATTACTGAAATA-CCCCAGTTTGT
84987082 AAAATTATCGAAATAC
65 AAAATTATCGAAATAC
* * *
84987098 CCTTA-TAGTGTAAAATTATTGAAATACCC
1 CCCTAGT-TTGTAAAATTATCGAAATACCC
84987127 TTGTAGTGTA
Statistics
Matches: 163, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
78 30 0.18
79 8 0.05
80 77 0.47
81 47 0.29
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (80 bp):
CCCTAGTTTGTAAAATTATCGAAATACCCCCAATTTGTAAAATTACTGAAATACCCCAGTTTGTA
AAATTATCGAAATAC
Found at i:84987109 original size:27 final size:27
Alignment explanation
Indices: 84987079--84987155 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
84987069 ACCCCCGGTT
84987079 TGTAAAATTATCGAAATACCCTTATAG
1 TGTAAAATTATCGAAATACCCTTATAG
* *
84987106 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTATAG
84987133 TGTAAAATTA-CAGAAATACCCTT
1 TGTAAAATTATC-GAAATACCCTT
84987156 TTATGGCAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTATAG
Found at i:84987137 original size:54 final size:53
Alignment explanation
Indices: 84986859--84987155 Score: 266
Period size: 54 Copynumber: 5.6 Consensus size: 53
84986849 GTCGTTAAGA
* * *
84986859 CCCTGGTTTGTAAAATTATCGAAATACCCCTGAT-TTTAAAATTAC-CAAATAC
1 CCCTGGTTTGTAAAATTATCGAAATA-CCCTTATGTGTAAAATTACTGAAATAC
* * ** *
84986911 CCC-AGTTTGTAAAATTATCAAAATACCCCCAGTTTGTAAAATTACTGAAATAC
1 CCCTGGTTTGTAAAATTATCGAAATACCCTTA-TGTGTAAAATTACTGAAATAC
*** * * * *
84986964 CCCCAATTTGTACAATTA-CTGAAATACCC-CAGTTTGTAAAATTACCGAAATAC
1 CCCTGGTTTGTAAAATTATC-GAAATACCCTTA-TGTGTAAAATTACTGAAATAC
* ** *
84987017 CCCTGGTTTGTAAAATTGTCGAAATACCACCAATTTGTAAAATTACTGAAATAC
1 CCCTGGTTTGTAAAATTATCGAAATACC-CTTATGTGTAAAATTACTGAAATAC
* *
84987071 CCCCGGTTTGTAAAATTATCGAAATACCCTTATAGTGTAAAATTATTGAAATA-
1 CCCTGGTTTGTAAAATTATCGAAATACCCTTAT-GTGTAAAATTACTGAAATAC
* *
84987124 CCCTTGTAGTGTAAAATTA-CAGAAATACCCTT
1 CCCTGGT-TTGTAAAATTATC-GAAATACCCTT
84987156 TTATGGCAAA
Statistics
Matches: 208, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
50 4 0.02
51 21 0.10
52 13 0.06
53 63 0.30
54 106 0.51
55 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (53 bp):
CCCTGGTTTGTAAAATTATCGAAATACCCTTATGTGTAAAATTACTGAAATAC
Found at i:84990140 original size:5 final size:5
Alignment explanation
Indices: 84990130--84990155 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
84990120 CAATATGAGA
84990130 TATGT TATGT TATGT TATGT TATGT T
1 TATGT TATGT TATGT TATGT TATGT T
84990156 TCATTTGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (5 bp):
TATGT
Found at i:84996446 original size:27 final size:28
Alignment explanation
Indices: 84996384--84996438 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
84996374 GTAGACACGA
*
84996384 AATTACCCCTAAAGAGCAAAATTACCGT
1 AATTACCCCTAAAGAGCAAAATAACCGT
*
84996412 AATTACCCTTAAAGAGCAAAATAACCG
1 AATTACCCCTAAAGAGCAAAATAACCG
84996439 ATATACCCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.45, C:0.24, G:0.11, T:0.20
Consensus pattern (28 bp):
AATTACCCCTAAAGAGCAAAATAACCGT
Found at i:85000855 original size:22 final size:22
Alignment explanation
Indices: 85000827--85000870 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
85000817 AAATGGCTTT
85000827 CAGGCCAAAATTAAGTTATGAC
1 CAGGCCAAAATTAAGTTATGAC
85000849 CAGGCCAAAATTAAGTTATGAC
1 CAGGCCAAAATTAAGTTATGAC
85000871 ATGTATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (22 bp):
CAGGCCAAAATTAAGTTATGAC
Found at i:85004685 original size:17 final size:18
Alignment explanation
Indices: 85004663--85004704 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
85004653 TTTTTATCAT
*
85004663 TTATCATTTA-TCGGGCA
1 TTATCATTTATTCAGGCA
85004680 TTATCATTTATTTCAGGCA
1 TTATCATTTA-TTCAGGCA
85004699 TTATCA
1 TTATCA
85004705 CCTATCGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.45
19 12 0.55
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (18 bp):
TTATCATTTATTCAGGCA
Found at i:85007923 original size:46 final size:46
Alignment explanation
Indices: 85007856--85008028 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
85007846 AACCCGCCCC
85007856 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGACATTCGGATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGGATCCA
* * * *
85007902 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-TC-GGATCCA
* * *
85007948 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGGATCCA
*
85007995 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
85008029 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
44 2 0.02
45 5 0.05
46 62 0.59
47 31 0.30
48 3 0.03
49 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGGATCCA
Found at i:85007968 original size:93 final size:93
Alignment explanation
Indices: 85007861--85008031 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
85007851 GCCCCTAAGT
*
85007861 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGGATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85007925 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
*
85007954 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85008019 CGAGTTCGGATGC
66 CGAGTTCGGATGC
85008032 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:85009961 original size:86 final size:85
Alignment explanation
Indices: 85009812--85009968 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 85
85009802 ATGCAGTACA
* * **
85009812 AGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAAAAGGTCTTACACAAAATC
1 AGACATGGTCTTACACGTAATCAAATATCGATGCCAAAGTCCCAGAAAAGGTCTTACACAAAATC
85009877 AAATATGATGCTGATGTCCC
66 AAATATGATGCTGATGTCCC
* * * *
85009897 AGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAAGTCTCAGACATGGTCTTACACAAAA
1 AGACATGGTCTTACACGT-AATC-AAATATCGATGCCAAAGTCCCAGAAAAGGTCTTACACAAAA
*
85009961 TCACATAT
64 TCAAATAT
85009969 CGGAATCCTA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 16 0.26
86 43 0.70
87 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (85 bp):
AGACATGGTCTTACACGTAATCAAATATCGATGCCAAAGTCCCAGAAAAGGTCTTACACAAAATC
AAATATGATGCTGATGTCCC
Found at i:85015921 original size:124 final size:124
Alignment explanation
Indices: 85015697--85015921 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
85015687 GAATTATGTG
* * * * * * *
85015697 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
85015762 GCTAAGTCCCGAAGGCGATTATGCTAGTGACTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAACTATATTTGTGTTTGAGCCTTAGTAACGA
*
85015821 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* *
85015886 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAACTATAT
85015922 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 3 0.03
124 84 0.97
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAACTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:85016043 original size:40 final size:40
Alignment explanation
Indices: 85015916--85016045 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
85015906 TTGCTGGAAA
* * *
85015916 TTATATCCGGGTTAAGACCTGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
85015956 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
85015996 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
85016036 TTATATCCGG
1 TTATATCCGG
85016046 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:85020711 original size:34 final size:34
Alignment explanation
Indices: 85020673--85020752 Score: 117
Period size: 34 Copynumber: 2.4 Consensus size: 34
85020663 TACTGAATTA
*
85020673 GGCTAAGGCCCACACTGATACTGTTACTG-TAATG
1 GGCTAAGGCCCACACTGATACTGCTACTGTTAA-G
*
85020707 GGCTAAGGCCCACACTGATATTGCTACTGTTAAG
1 GGCTAAGGCCCACACTGATACTGCTACTGTTAAG
*
85020741 GGCTTAGGCCCA
1 GGCTAAGGCCCA
85020753 GACTATTTGC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
34 39 0.93
35 3 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (34 bp):
GGCTAAGGCCCACACTGATACTGCTACTGTTAAG
Found at i:85028633 original size:65 final size:65
Alignment explanation
Indices: 85028529--85028659 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
85028519 ACTGAGTTTC
*
85028529 CATAAACTCATTCTTCTGCTTATCTGAACAGGTAACCCTTAGGCAGGTCAGTGCTGCGAGGAACT
1 CATAAACTCACTCTTCTGCTTATCTGAACAGGTAACCCTTAGGCAGGTCAGTGCTGCGAGGAACT
* *
85028594 CATAAACTCACTCTTCTGCTTATCTGCACAGGTAACCCTTAGGCAGGTCAGTGCTGCGAGGGACT
1 CATAAACTCACTCTTCTGCTTATCTGAACAGGTAACCCTTAGGCAGGTCAGTGCTGCGAGGAACT
85028659 C
1 C
85028660 GGAGATGGCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (65 bp):
CATAAACTCACTCTTCTGCTTATCTGAACAGGTAACCCTTAGGCAGGTCAGTGCTGCGAGGAACT
Found at i:85038416 original size:27 final size:26
Alignment explanation
Indices: 85038368--85038419 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
85038358 ACGAGGCTGC
*
85038368 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
85038394 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
85038420 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:85040256 original size:44 final size:42
Alignment explanation
Indices: 85040177--85040270 Score: 118
Period size: 44 Copynumber: 2.2 Consensus size: 42
85040167 TTCTAGATAG
* * *
85040177 GGTCTTACACGAAATCATATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCACAAACAATGCCAACGTCCCAGACAT
* *
85040219 GGTCTTACACGTAAATCACAAATCGATGCCAACGTCCCAGACGT
1 GGTCTTACACG-AAATCACAAA-CAATGCCAACGTCCCAGACAT
85040263 GG-CTTACA
1 GGTCTTACA
85040271 TGATAACATA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 11 0.24
43 14 0.31
44 20 0.44
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (42 bp):
GGTCTTACACGAAATCACAAACAATGCCAACGTCCCAGACAT
Found at i:85044619 original size:40 final size:40
Alignment explanation
Indices: 85044561--85044710 Score: 210
Period size: 40 Copynumber: 3.8 Consensus size: 40
85044551 CTGACTAAAT
85044561 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
85044601 CCGGGTTAAATCCTGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
85044641 CCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
85044681 CCGGGCCAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTCAATTCCCGAAGGCATTTGTGCGA
85044711 ATCACTATAA
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:85044723 original size:80 final size:79
Alignment explanation
Indices: 85044518--85044725 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 79
85044508 TTCGAATGGT
* * * * * *
85044518 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAACTGACTAAATCCGGGTCAATTCCCGAAGGCAT
1 ATCCGGGCTAAATCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTCAAGTCCAGAAGGCAT
85044583 TTGTGCGAGTTACCAA
64 TTGTGCGAGTTACCAA
* * * * * * *
85044599 AACCGGGTTAAATCCTGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCAGAAGGCATT
1 ATCCGGGCTAAATCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAAGTCCAGAAGGCATT
*
85044664 TGTGCGAGTTACTAA
65 TGTGCGAGTTACCAA
* * *
85044679 ATCCGGGCCAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG
1 ATCCGGGCTAAATCCCGAAGGCATTTGTGCGAATCACTA-AACCGGG
85044726 CTATGTCCCG
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
79 2 0.02
80 71 0.69
81 30 0.29
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAATCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAAGTCCAGAAGGCATTT
GTGCGAGTTACCAA
Found at i:85044725 original size:40 final size:39
Alignment explanation
Indices: 85044530--85044738 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 39
85044520 CCGGGCTAAG
* * * *
85044530 TCCCGAAGGCTTTTGTGCTAACTGACTAAATCCGGGTCAAT
1 TCCCGAAGGCATTTGTGC-GAGTTACTAAA-CCGGGTCAAT
* * *
85044571 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAA
1 TCCCGAAGGCATTTGTGCGAGTTA-CTAAACCGGGTCAAT
* * * *
85044611 TCCTGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCATTTGTGCGAGTTA-CTAAACCGGGTCAAT
* *
85044651 TCCAGAAGGCATTTGTGCGAGTTACTAAATCCGGGCCAAT
1 TCCCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTCAAT
* * * *
85044691 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CTAT
1 TCCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGTCAAT
85044730 GTCCCGAAG
1 -TCCCGAAG
85044739 ACAATCGAGC
Statistics
Matches: 145, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 7 0.05
40 115 0.79
41 23 0.16
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
TCCCGAAGGCATTTGTGCGAGTTACTAAACCGGGTCAAT
Found at i:85044751 original size:120 final size:121
Alignment explanation
Indices: 85044520--85044752 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 121
85044510 CGAATGGTAT
* * * *
85044520 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAACTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCAGAAGGCATTTGTGCTAACTGACTAAATCCGGGCCAATTCCCGAAGGCAATT
* * * * * * * *
85044585 GTGCGAGTTACCAAAACCGGGTTAAATCCTGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAATCCCGAAGACAATCGAGCGAGTTACCAAAA
* * * *
85044641 CCGGGTTAAGTCCAGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCCAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCAGAAGGCATTTGTGCTAACTGACTAAATCCGGGCCAATTCCCGAAGGCAATT
* * **
85044705 GTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGT
66 GTGCGAATCACCAAAACCGGGCTAAATCCCGAAGACAATCGAGCGAGT
85044753 CGCTATATCC
Statistics
Matches: 92, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
120 67 0.73
121 25 0.27
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCAGAAGGCATTTGTGCTAACTGACTAAATCCGGGCCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAATCCCGAAGACAATCGAGCGAGTTACCAAAA
Found at i:85053129 original size:71 final size:71
Alignment explanation
Indices: 85053008--85053201 Score: 307
Period size: 71 Copynumber: 2.7 Consensus size: 71
85052998 AGGACCAGGG
* *
85053008 TTGCGATAAGTATCAGACTAAAATAAGTAAGTAGCTAAAATGCTACAGTATATGCCCAAGGTTTG
1 TTGCAATAAGTATCAAACTAAAATAAGTAAGTAGCTAAAATGCTACAGTATATGCCCAAGGTTTG
85053073 ATACCC
66 ATACCC
* *
85053079 TTGCAATAAGTATGAAACTAAAATAAGTAAGTAGCTAAAATGCTATAGTATATGCCCAAGGTTTG
1 TTGCAATAAGTATCAAACTAAAATAAGTAAGTAGCTAAAATGCTACAGTATATGCCCAAGGTTTG
85053144 ATACCC
66 ATACCC
* * * * *
85053150 TTGCCATAAGTATCAAAGTGAAATAAGTCAGTAGCTAAAATGCTACATTATA
1 TTGCAATAAGTATCAAACTAAAATAAGTAAGTAGCTAAAATGCTACAGTATA
85053202 AGGACTAGGT
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 112 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (71 bp):
TTGCAATAAGTATCAAACTAAAATAAGTAAGTAGCTAAAATGCTACAGTATATGCCCAAGGTTTG
ATACCC
Found at i:85057273 original size:43 final size:42
Alignment explanation
Indices: 85057184--85057278 Score: 104
Period size: 42 Copynumber: 2.2 Consensus size: 42
85057174 TAAGATTACG
* * * *
85057184 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTTG
1 TGTAAGACCATAGCTGGGATATGCCATCGATACGAGACTTTA
*
85057226 TGTAAGACCATAGCTGGGCTATTGCCATCGATACG-GTA-TTTCA
1 TGTAAGACCATAGCTGGGATA-TGCCATCGATACGAG-ACTTT-A
85057269 TGTAAGACCA
1 TGTAAGACCA
85057279 CCATATCTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
42 23 0.51
43 22 0.49
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGATATGCCATCGATACGAGACTTTA
Found at i:85064852 original size:17 final size:17
Alignment explanation
Indices: 85064830--85064864 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
85064820 ACGGCAGAAG
85064830 AGTGTTCTTTTTGGATT
1 AGTGTTCTTTTTGGATT
85064847 AGTGTTCTTTTTGGATT
1 AGTGTTCTTTTTGGATT
85064864 A
1 A
85064865 AGTATTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.06, G:0.23, T:0.57
Consensus pattern (17 bp):
AGTGTTCTTTTTGGATT
Found at i:85078476 original size:17 final size:17
Alignment explanation
Indices: 85078435--85078477 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
85078425 CCCGATTATG
* *
85078435 AAAAAGGACTAAATTGT
1 AAAAAGGGCTAAATCGT
85078452 AAAAAGGGCTAAATCGT
1 AAAAAGGGCTAAATCGT
85078469 AAAAAGGGC
1 AAAAAGGGC
85078478 AAAAGTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.23, T:0.16
Consensus pattern (17 bp):
AAAAAGGGCTAAATCGT
Found at i:85080354 original size:29 final size:28
Alignment explanation
Indices: 85080284--85080358 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
85080274 ATACTCGATT
* *
85080284 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
85080312 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
85080341 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
85080359 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:85080375 original size:29 final size:29
Alignment explanation
Indices: 85080342--85080415 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
85080332 CCTTCGAGCT
85080342 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85080371 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85080400 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
85080416 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:85088154 original size:29 final size:29
Alignment explanation
Indices: 85088120--85088194 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
85088110 TACTCGATTT
*
85088120 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
85088149 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
85088178 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
85088195 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:85088211 original size:29 final size:29
Alignment explanation
Indices: 85088178--85088251 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
85088168 CCTTCGAGCT
85088178 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85088207 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85088236 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
85088252 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:85090704 original size:47 final size:46
Alignment explanation
Indices: 85090537--85090704 Score: 162
Period size: 47 Copynumber: 3.6 Consensus size: 46
85090527 GACGAGGGAT
* * * *
85090537 AGTGTAAGACATGTTTGGGACATGCATTAGCCGC-ATCATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGATGATG-TAGCC
* * * * * * *
85090583 TA-TGTAAGACAACGTCTGGGAAATGGCAATGGCATAGA-GGTGAATGCC
1 -AGTGTAAGAC-ATGTCTGGGACAT-GCATTGGCCTCGATGATGTA-GCC
85090631 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGATGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGATGATG-TAGCC
85090678 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
85090705 CAGCACGTAT
Statistics
Matches: 96, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
46 18 0.19
47 57 0.59
48 20 0.21
49 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGATGATGTAGCC
Found at i:85097025 original size:28 final size:28
Alignment explanation
Indices: 85096961--85097074 Score: 114
Period size: 27 Copynumber: 4.2 Consensus size: 28
85096951 GGAGGAAGCG
*
85096961 TTCTGGTGGCTTTGCCACAAATATCTGA
1 TTCTGGTGGCTCTGCCACAAATATCTGA
* *
85096989 -TCTGGTGGCTCTGTCATAAATATCT-A
1 TTCTGGTGGCTCTGCCACAAATATCTGA
*
85097015 TTTCTGGTGGCTCTACCAC-AATATCTGTA
1 -TTCTGGTGGCTCTGCCACAAATATCTG-A
* *
85097044 TT-TGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGA
85097069 TTCTGG
1 TTCTGG
85097075 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.03
26 4 0.06
27 49 0.68
28 16 0.22
29 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGA
Found at i:85097050 original size:55 final size:54
Alignment explanation
Indices: 85096961--85097067 Score: 144
Period size: 55 Copynumber: 2.0 Consensus size: 54
85096951 GGAGGAAGCG
* * *
85096961 TTCTGGTGGCTTTGCCACAAATATCTGATCTGGTGGCTCTGTCATAAATATCTAT
1 TTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGTCA-AAATATCTAT
* *
85097016 TTCTGGTGGCTCTACCAC-AATATCTGTATTTGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTACCACAAATATCTG-ATCTGGTGACTCTGTCAAAATATCT
85097068 GTTCTGGCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 15 0.33
55 31 0.67
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (54 bp):
TTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGTCAAAATATCTAT
Found at i:85102042 original size:50 final size:50
Alignment explanation
Indices: 85101921--85102162 Score: 215
Period size: 50 Copynumber: 4.8 Consensus size: 50
85101911 AGCTGAAGCT
* * * * * *
85101921 ATCTGATACGCATAGTAGCCTGCACCTAGTACTACTCATGCGACC--AAC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAC
* * * * *
85101969 AATCCGGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACCTCACC
1 -ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAC
* *
85102020 ATCTGATACACGTACTAGCCTGCACTTAGTACTACACACGTGATCC-AAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAA-AC
* * * * * *
85102071 A-CTGAGTACGCATAGTACCCTGCACTTAGTACTACACATGCGA-CTTAAC
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAC
* *
85102120 AGTATGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
85102163 TATTCACAAT
Statistics
Matches: 154, Mismatches: 31, Indels: 15
0.77 0.16 0.08
Matches are distributed among these distances:
49 39 0.25
50 76 0.49
51 39 0.25
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAC
Found at i:85108002 original size:15 final size:15
Alignment explanation
Indices: 85107982--85108043 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
85107972 TCTTGGGTTC
85107982 CTTTATTCTGGATTT
1 CTTTATTCTGGATTT
* *
85107997 CTTTATTTTGGGTTT
1 CTTTATTCTGGATTT
85108012 -TTCTA-TCTTGGATTT
1 CTT-TATTC-TGGATTT
*
85108027 CTTTATTC-GGTTTT
1 CTTTATTCTGGATTT
85108041 CTT
1 CTT
85108044 ATTATCTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
14 11 0.29
15 23 0.61
16 4 0.11
ACGTcount: A:0.10, C:0.13, G:0.15, T:0.63
Consensus pattern (15 bp):
CTTTATTCTGGATTT
Found at i:85108010 original size:30 final size:30
Alignment explanation
Indices: 85107974--85108033 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
85107964 GTATCGTATC
85107974 TTGGGTTCCTTTAT-TC-TGGATTTCTTTATT
1 TTGGGTT--TTTATATCTTGGATTTCTTTATT
*
85108004 TTGGGTTTTTCTATCTTGGATTTCTTTATT
1 TTGGGTTTTTATATCTTGGATTTCTTTATT
85108034 CGGTTTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 4 0.15
29 2 0.07
30 21 0.78
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.62
Consensus pattern (30 bp):
TTGGGTTTTTATATCTTGGATTTCTTTATT
Found at i:85114147 original size:39 final size:39
Alignment explanation
Indices: 85113985--85114139 Score: 238
Period size: 39 Copynumber: 3.9 Consensus size: 39
85113975 TATGGTAACC
** *
85113985 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
85114025 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
85114064 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
85114103 CGCACAATTGCCTTCAGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
85114140 TTTGCACATT
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 90 0.85
40 16 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:85120072 original size:40 final size:39
Alignment explanation
Indices: 85120027--85120156 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
85120017 CGGAATACAA
85120027 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
85120067 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
85120107 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
85120147 CCGGATATAA
1 CCGGATATAA
85120157 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:85123022 original size:47 final size:46
Alignment explanation
Indices: 85122978--85123156 Score: 208
Period size: 44 Copynumber: 3.9 Consensus size: 46
85122968 CTAGGATGTT
85122978 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
*** * *
85123024 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
85123070 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
*
85123117 GA--A-CGCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85123157 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 5 0.04
44 35 0.31
45 2 0.02
46 33 0.29
47 31 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:85125225 original size:27 final size:27
Alignment explanation
Indices: 85125195--85125256 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
85125185 GGGCAAAATG
85125195 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
85125222 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
85125249 GTAATTTT
1 GTAATTTT
85125257 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:85125269 original size:27 final size:27
Alignment explanation
Indices: 85125236--85125315 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
85125226 TTTTACCCTA
* *
85125236 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
85125263 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
85125290 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
85125316 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:85125270 original size:54 final size:54
Alignment explanation
Indices: 85125211--85125337 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
85125201 TTACCCCACA
** *
85125211 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
85125264 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
85125319 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
85125338 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:85125323 original size:27 final size:28
Alignment explanation
Indices: 85125237--85125349 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
85125227 TTTACCCTAC
* * *
85125237 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
85125264 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
85125291 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
85125319 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
85125346 AGGG
1 AGGG
85125350 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:85125658 original size:27 final size:27
Alignment explanation
Indices: 85125330--85125647 Score: 404
Period size: 27 Copynumber: 11.8 Consensus size: 27
85125320 GGGTATTTCT
* **
85125330 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * **
85125357 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
85125384 GTAATT-TATAAATCGACGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
85125410 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
85125437 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
85125464 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
85125491 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
85125518 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
85125545 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
85125572 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
85125599 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
85125626 ATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
85125648 CTTTGGTAAT
Statistics
Matches: 253, Mismatches: 37, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 18 0.07
27 235 0.93
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:85125658 original size:54 final size:54
Alignment explanation
Indices: 85125330--85125647 Score: 449
Period size: 54 Copynumber: 5.9 Consensus size: 54
85125320 GGGTATTTCT
* ** * * * * *
85125330 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * *
85125384 GTAATT-TATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
85125437 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
85125491 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
85125545 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
85125599 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
85125648 CTTTGGTAAT
Statistics
Matches: 240, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
53 43 0.18
54 197 0.82
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:85125708 original size:27 final size:27
Alignment explanation
Indices: 85125636--85125741 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
85125626 ATAATTCTGT
* *
85125636 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
*
85125663 AAGTCGA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
85125689 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
85125716 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
85125742 GTAAACTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
25 3 0.04
26 21 0.31
27 44 0.65
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:85125748 original size:28 final size:27
Alignment explanation
Indices: 85125670--85125750 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
85125660 TACAAGTCGA
*
85125670 GGTATTTCAGTAATTTTACAAA-TCGAG
1 GGTATTTCAGTAATTTTACAAACT-AAG
*
85125697 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCAGTAATTTTACAAACTAAG
* *
85125724 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCAGTAATTTTA-CAAACTAA
85125751 AGTATTCTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 39 0.83
28 8 0.17
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAACTAAG
Found at i:85129469 original size:27 final size:27
Alignment explanation
Indices: 85129439--85129500 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
85129429 GGGCAAAATG
85129439 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
85129466 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
85129493 GTAATTTT
1 GTAATTTT
85129501 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:85129513 original size:27 final size:27
Alignment explanation
Indices: 85129480--85129559 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
85129470 TTTTACCCTA
* *
85129480 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
85129507 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
85129534 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
85129560 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:85129514 original size:54 final size:54
Alignment explanation
Indices: 85129455--85129581 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
85129445 TTACCCCACA
** *
85129455 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
85129508 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
85129563 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
85129582 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:85129567 original size:27 final size:28
Alignment explanation
Indices: 85129481--85129593 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
85129471 TTTACCCTAC
* * *
85129481 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
85129508 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
85129535 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
85129563 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
85129590 AGGG
1 AGGG
85129594 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:85129901 original size:27 final size:27
Alignment explanation
Indices: 85129574--85129890 Score: 386
Period size: 27 Copynumber: 11.8 Consensus size: 27
85129564 GGGTATTTCT
* **
85129574 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * **
85129601 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
85129628 GTAATT-TATAAATCGACGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
85129654 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
85129681 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
85129708 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
85129735 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
85129762 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
85129789 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
85129816 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
85129843 GTAATTATGT-AATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
85129869 ATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
85129891 CTTTGGTAAT
Statistics
Matches: 251, Mismatches: 37, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 41 0.16
27 210 0.84
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:85129951 original size:27 final size:27
Alignment explanation
Indices: 85129879--85129984 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
85129869 ATAATTCTGT
* *
85129879 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
*
85129906 AAGTCGA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
85129932 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
85129959 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
85129985 GTAAACTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
25 3 0.04
26 21 0.31
27 44 0.65
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:85129991 original size:28 final size:27
Alignment explanation
Indices: 85129913--85129993 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
85129903 TACAAGTCGA
*
85129913 GGTATTTCAGTAATTTTACAAA-TCGAG
1 GGTATTTCAGTAATTTTACAAACT-AAG
*
85129940 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCAGTAATTTTACAAACTAAG
* *
85129967 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCAGTAATTTTA-CAAACTAA
85129994 AGTATTCTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 39 0.83
28 8 0.17
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAACTAAG
Found at i:85133711 original size:27 final size:27
Alignment explanation
Indices: 85133681--85133742 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
85133671 GGGCAAAATG
85133681 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
85133708 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
85133735 GTAATTTT
1 GTAATTTT
85133743 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:85133755 original size:27 final size:27
Alignment explanation
Indices: 85133722--85133801 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
85133712 TTTTACCCTA
* *
85133722 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
85133749 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
85133776 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
85133802 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:85133756 original size:54 final size:54
Alignment explanation
Indices: 85133697--85133823 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
85133687 TTACCCCACA
** *
85133697 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
85133750 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
85133805 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
85133824 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:85133809 original size:27 final size:28
Alignment explanation
Indices: 85133723--85133835 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
85133713 TTTACCCTAC
* * *
85133723 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
85133750 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
85133777 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
85133805 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
85133832 AGGG
1 AGGG
85133836 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:85133836 original size:27 final size:27
Alignment explanation
Indices: 85133816--85134134 Score: 399
Period size: 27 Copynumber: 11.8 Consensus size: 27
85133806 GGGTATTTCT
*
85133816 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
85133843 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
85133870 GTAATTTTATAAATCGACGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
85133896 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* * *
85133924 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
85133951 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
85133978 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
85134005 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
85134032 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
85134059 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
85134086 GTAATTATGTAAGTCGGGGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
85134112 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTTTGTAAATCGAGGGTA
85134135 CTTTGGTAAT
Statistics
Matches: 254, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 251 0.99
28 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:85134145 original size:54 final size:54
Alignment explanation
Indices: 85133816--85134134 Score: 440
Period size: 54 Copynumber: 5.9 Consensus size: 54
85133806 GGGTATTTCT
* ** * * * * *
85133816 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * *
85133870 GTAATTTTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
85133924 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
85133978 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
85134032 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * * *
85134086 GTAATTATGTAAGTCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
85134135 CTTTGGTAAT
Statistics
Matches: 240, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 240 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:85134160 original size:27 final size:27
Alignment explanation
Indices: 85134123--85134229 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
85134113 ATAATTCTGT
* *
85134123 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
*
85134150 AAGTCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
85134177 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
** *
85134204 AAATTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTA
85134230 GTAAACTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
26 3 0.04
27 67 0.96
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:85134188 original size:81 final size:81
Alignment explanation
Indices: 85133816--85134188 Score: 343
Period size: 81 Copynumber: 4.6 Consensus size: 81
85133806 GGGTATTTCT
** * * * * * * * * *
85133816 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTTTATA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
*
85133881 AATCGACGGTAAAACG
66 AATCGAGGGTAAAACG
* ** * * * * * *
85133897 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
*
85133962 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAACG
* ** *
85133978 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
85134043 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
** * * * * *
85134059 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAGTCGGGGGTAAAAC-GATAATTCTGT
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAG-TAATTCTGT
* ****
85134123 AAATCGGGGGTACTTTG
65 AAATCGAGGGTAAAACG
* *** *
85134140 GTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTA
85134189 TTTCAGTATT
Statistics
Matches: 251, Mismatches: 40, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
80 1 0.00
81 250 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTTTACAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:85142431 original size:40 final size:40
Alignment explanation
Indices: 85142376--85142476 Score: 168
Period size: 40 Copynumber: 2.5 Consensus size: 40
85142366 TATTCAGATG
85142376 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
85142416 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
85142456 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
85142477 ATACTTGGGT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
39 14 0.24
40 44 0.76
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:85150467 original size:40 final size:39
Alignment explanation
Indices: 85150362--85150585 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 39
85150352 TATTCGGATG
* *
85150362 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCT
85150402 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-CT
* *
85150441 ATATCCAGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGCT
*
85150484 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-CT
* *
85150524 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCT
*
85150564 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
85150586 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 1 0.01
39 51 0.31
40 74 0.45
41 2 0.01
43 34 0.21
44 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
Found at i:85150604 original size:83 final size:79
Alignment explanation
Indices: 85150362--85150585 Score: 349
Period size: 83 Copynumber: 2.8 Consensus size: 79
85150352 TATTCGGATG
* *
85150362 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAGTCCCGAAGGCAT
85150427 TTGTGCTAGTGACT
66 TTGTGCTAGTGACT
* * *
85150441 ATATCCAGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCC-GGCTAAGTCCCGAAG
85150506 GCATTTGTGCTAGTGACT
62 GCATTTGTGCTAGTGACT
* *
85150524 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAGTCCCGAAGG
85150586 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
79 45 0.34
80 12 0.09
81 2 0.02
82 10 0.08
83 62 0.47
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCTAGTGACT
Found at i:85152230 original size:23 final size:23
Alignment explanation
Indices: 85152186--85152263 Score: 95
Period size: 24 Copynumber: 3.3 Consensus size: 23
85152176 CGGCTCCTCC
85152186 TGAGCTAATGAACAGTAAGCTCATA
1 TGAGCTAA--AACAGTAAGCTCATA
*
85152211 TGAGCTAAAACGGTAAGCTCCA-A
1 TGAGCTAAAACAGTAAGCT-CATA
*
85152234 TGAGCTGAAAATAGTAAGCTCATA
1 TGAGCT-AAAACAGTAAGCTCATA
85152258 TGAGCT
1 TGAGCT
85152264 GTGGTGAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
23 19 0.40
24 20 0.43
25 8 0.17
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (23 bp):
TGAGCTAAAACAGTAAGCTCATA
Found at i:85152250 original size:24 final size:24
Alignment explanation
Indices: 85152196--85152264 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
85152186 TGAGCTAATG
85152196 AACAGTAAGCTCATATGAGCT-AA
1 AACAGTAAGCTCATATGAGCTGAA
*
85152219 AACGGTAAGCTCCA-ATGAGCTGAA
1 AACAGTAAGCT-CATATGAGCTGAA
*
85152243 AATAGTAAGCTCATATGAGCTG
1 AACAGTAAGCTCATATGAGCTG
85152265 TGGTGAGTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
23 19 0.47
24 21 0.52
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (24 bp):
AACAGTAAGCTCATATGAGCTGAA
Found at i:85155312 original size:19 final size:20
Alignment explanation
Indices: 85155280--85155318 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
85155270 TATGACAAAG
85155280 AATGATATGAATG-TATATA
1 AATGATATGAATGTTATATA
85155299 AATGA-ATGATATGTTATATA
1 AATGATATGA-ATGTTATATA
85155319 TGCTCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (20 bp):
AATGATATGAATGTTATATA
Found at i:85158163 original size:39 final size:39
Alignment explanation
Indices: 85158120--85158271 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
85158110 TATGGTAACC
* *
85158120 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
85158159 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
85158198 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
85158237 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
85158272 TCGAACATTC
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 96 0.91
40 9 0.09
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:85166134 original size:39 final size:39
Alignment explanation
Indices: 85166091--85166240 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
85166081 TATGGTAACC
* *
85166091 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
85166130 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
85166169 --CACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
85166206 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
85166241 TCGAACATTC
Statistics
Matches: 102, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
37 36 0.35
39 57 0.56
40 9 0.09
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:85168241 original size:47 final size:47
Alignment explanation
Indices: 85168172--85168433 Score: 234
Period size: 47 Copynumber: 5.6 Consensus size: 47
85168162 TAAGGTGCCA
* *
85168172 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGCCG
* *
85168219 ATGCCATGTCCCTGACATGGTCTTACACTGACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCG-AGCCG
* * * *
85168267 ATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCGGGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-GAGCCG
* ** * * *
85168313 AT-TCATGTCCCAGACAT-GTCTTACACTAACTCTCGTCTCAGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-GAGCCG
* * * * *
85168359 ATGCCATGTTCCAGACGTGGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCG-AGCCG
*
85168407 ATG-CATGTCCCAGAAAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
85168434 AGCCAAAAAT
Statistics
Matches: 179, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
46 73 0.41
47 75 0.42
48 30 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGCCG
Found at i:85168428 original size:140 final size:140
Alignment explanation
Indices: 85168176--85168433 Score: 353
Period size: 140 Copynumber: 1.8 Consensus size: 140
85168166 GTGCCAATGC
** *
85168176 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCTGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTAACTCACATCTCAAGTCGATGCCATGTCCCAGACATGGTC
*
85168241 TTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTC
66 TTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTC
85168306 GGGGCCGATT
131 GGGGCCGATT
* * * *
85168316 CATGTCCCAGACAT-GTCTTACACTAACTCTCGTCTC-AGTGCCGATGCCATGTTCCAGACGTGG
1 CATGTCCCAGACATGGTCTTACACTAACTCACATCTCAAGT--CGATGCCATGTCCCAGACATGG
* * *
85168379 TCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGAA-ATGTCTTACACT
64 TCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCA-AACATGTCTTACACT
85168434 AGCCAAAAAT
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
138 3 0.03
139 18 0.17
140 79 0.77
141 3 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAACTCACATCTCAAGTCGATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTC
GGGGCCGATT
Found at i:85178490 original size:46 final size:46
Alignment explanation
Indices: 85178404--85178516 Score: 156
Period size: 46 Copynumber: 2.4 Consensus size: 46
85178394 CTCTTGTAGT
* **
85178404 CGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAGGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGAC
* *
85178450 GGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGATAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TACGTCTCGAGAC
85178496 CGATGCCATGTCCCAGACATG
1 CGATG-CATGTCCCAGACATG
85178517 GTTTTACGTT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
46 43 0.73
47 16 0.27
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGAC
Found at i:85178945 original size:30 final size:30
Alignment explanation
Indices: 85178910--85178967 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
85178900 AAATTCACAT
* *
85178910 CTTTGGTAAAATGACCATTTTGCCCCTAAA
1 CTTTGGCAAAATGACCATTTTACCCCTAAA
85178940 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
85178968 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAAA
Found at i:85184707 original size:3 final size:3
Alignment explanation
Indices: 85184673--85184747 Score: 102
Period size: 3 Copynumber: 25.7 Consensus size: 3
85184663 CCTTTTTCCT
* *
85184673 TTA TTA TT- TTCA TAA TT- TTA -TA TTA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
85184716 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
85184748 TTCCTTTATT
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
2 6 0.09
3 57 0.89
4 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:85184768 original size:4 final size:4
Alignment explanation
Indices: 85184752--85184803 Score: 59
Period size: 4 Copynumber: 13.0 Consensus size: 4
85184742 ATTATTTTCC
* * * * *
85184752 TTTA TTTA CTTA TTTA TTTA TTTA TTTA TTTC GTTA TTTA TTCA TTTC
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
85184800 TTTA
1 TTTA
85184804 ATTAGTTTTA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:85186397 original size:5 final size:5
Alignment explanation
Indices: 85186387--85186439 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
85186377 CCATTGAGTC
* * *
85186387 TATTT TATTT TATTT TATTT TATTTGT TCTTT TCTTT TAATT TATTT TATTT
1 TATTT TATTT TATTT TATTT TA-TT-T TATTT TATTT TATTT TATTT TATTT
85186439 T
1 T
85186440 TCTGGTTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
5 36 0.86
6 4 0.10
7 2 0.05
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:85186430 original size:27 final size:26
Alignment explanation
Indices: 85186389--85186442 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
85186379 ATTGAGTCTA
*
85186389 TTTTATTTTATTTTATTTTATTTGTTC
1 TTTTATTTTAATTTATTTTATTT-TTC
*
85186416 TTTTCTTTTAATTTATTTTATTTTTC
1 TTTTATTTTAATTTATTTTATTTTTC
85186442 T
1 T
85186443 GGTTATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.78
Consensus pattern (26 bp):
TTTTATTTTAATTTATTTTATTTTTC
Found at i:85186456 original size:27 final size:26
Alignment explanation
Indices: 85186391--85186456 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 26
85186381 TGAGTCTATT
*
85186391 TTATTTTATTTTATTTTATTTGTTCTT
1 TTATTTTA-TTTATTTTATTTGTTCTG
*
85186418 TTCTTTTAATTTATTTTATTT-TTCTGG
1 TTATTTT-ATTTATTTTATTTGTTCT-G
85186445 TTATTTGTATTT
1 TTATTT-TATTT
85186457 TCCTAAGACT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 4 0.12
27 27 0.82
28 2 0.06
ACGTcount: A:0.15, C:0.05, G:0.06, T:0.74
Consensus pattern (26 bp):
TTATTTTATTTATTTTATTTGTTCTG
Found at i:85188729 original size:43 final size:41
Alignment explanation
Indices: 85188573--85188730 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 41
85188563 TATGTGTTAT
* * * **
85188573 CGTGTAAAACCACATCTTGGATGTTGGCATCAAATTATGATTTA
1 CGTGTAAGACCACGTC-TGGACGTTGGCATCGTATT-TGA-TTA
* *
85188617 CGTGTAAGACCACGTCTGGATGTTGGCATCGTATTTGATTT
1 CGTGTAAGACCACGTCTGGACGTTGGCATCGTATTTGATTA
*
85188658 CGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-GTCT-GGAC-GTTGGCATCG-TATTTGATTA
*
85188701 CATGTAAG-CCTACGTCTGGGACGTTGGCAT
1 CGTGTAAGACC-ACGTCT-GGACGTTGGCAT
85188731 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
40 1 0.01
41 17 0.18
42 17 0.18
43 47 0.48
44 15 0.15
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
CGTGTAAGACCACGTCTGGACGTTGGCATCGTATTTGATTA
Found at i:85191811 original size:46 final size:46
Alignment explanation
Indices: 85191761--85191886 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
85191751 TGTTTGAGCA
* * * *
85191761 TCCGAACTCGTTGGGTTGAGTCCGCGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
85191807 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
85191853 CCCGAGCTCGTTGAGTTGAGTCCGAGATCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85191887 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:85193350 original size:30 final size:30
Alignment explanation
Indices: 85193314--85193370 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
85193304 TTTAAAGATC
*
85193314 CACATGGCCTGAG-CACATGCCCGTGTGAGA
1 CACATGGCCT-AGCCACATGCCCATGTGAGA
*
85193344 CACATGGGCTAGCCACATGCCCATGTG
1 CACATGGCCTAGCCACATGCCCATGTG
85193371 GTAGCCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (30 bp):
CACATGGCCTAGCCACATGCCCATGTGAGA
Found at i:85195939 original size:40 final size:40
Alignment explanation
Indices: 85195895--85196086 Score: 285
Period size: 40 Copynumber: 4.8 Consensus size: 40
85195885 ATAGCAACTC
* * *
85195895 GCACAGATGCCTTCGGGTCTTAGCCCGGATATAGTCAATA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCAATA
* *
85195935 GCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCAATA
*
85195975 GCACAAATACCTTCGGGACTTAGCCCGGATATAATCAATA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCAATA
*
85196015 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCAATA
* * * *
85196055 GCATAAATGCCCTCGGGACTTAACCTGGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
85196087 CATTCGAATA
Statistics
Matches: 138, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCAATA
Found at i:85202543 original size:27 final size:27
Alignment explanation
Indices: 85202505--85202674 Score: 118
Period size: 27 Copynumber: 6.3 Consensus size: 27
85202495 CAAAACAGTT
* * *
85202505 ATTTTACCCTATAGGGATATGTCGGTC
1 ATTTTACACTATAGGGATATTTCGGTA
85202532 ATTTTACACTATAAGGG-TATTTCGGTA
1 ATTTTACACTAT-AGGGATATTTCGGTA
* * *
85202559 ATTTTACACTACAAGGATATTTCGATA
1 ATTTTACACTATAGGGATATTTCGGTA
* * * *
85202586 ATTTTACA-AATCAGGAATGTTTCAGTA
1 ATTTTACACTAT-AGGGATATTTCGGTA
* *
85202613 ATTTTACA-AATCGAGGG-TATTTCAGTA
1 ATTTTACACTAT--AGGGATATTTCGGTA
* *
85202640 ATTTTACA-AATCGAGGG-TATTTCGATA
1 ATTTTACACTAT--AGGGATATTTCGGTA
85202667 ATTTTACA
1 ATTTTACA
85202675 AATCGAGGGT
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.03
27 110 0.91
28 7 0.06
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.38
Consensus pattern (27 bp):
ATTTTACACTATAGGGATATTTCGGTA
Found at i:85202675 original size:27 final size:27
Alignment explanation
Indices: 85202545--85202884 Score: 322
Period size: 27 Copynumber: 12.7 Consensus size: 27
85202535 TTACACTATA
* * *
85202545 AGGGTATTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
85202572 AGGATATTTCGATAATTTTACAAATC-
1 AGGGTATTTCGATAATTTTACAAATCG
* *
85202598 AGGAATGTTTC-AGTAATTTTACAAATCG
1 AGG-GTATTTCGA-TAATTTTACAAATCG
85202626 AGGGTATTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
85202653 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
85202680 AGGGTGTTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
85202707 GGGGTATTT-TAGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
85202734 AGGGTATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
85202760 AGGGTATTTTGATAATTTTACAAAT-G
1 AGGGTATTTCGATAATTTTACAAATCG
*
85202786 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
85202813 AGGGTGTTTCGGTAATTTCAAAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
*
85202839 AGGGGTATTTCAATAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
*
85202867 AGGGCATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
85202885 CTCTTTATTA
Statistics
Matches: 269, Mismatches: 32, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
26 51 0.19
27 211 0.78
28 7 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:85204463 original size:46 final size:46
Alignment explanation
Indices: 85204382--85204496 Score: 115
Period size: 46 Copynumber: 2.5 Consensus size: 46
85204372 CAAGTGCTAG
* * * *
85204382 TGTAAGAGATGTCTAGGACATGCTTTGGCCTCGAGACGTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCGTCGGCCTCGAGACGTAAGCCAA
* * * *
85204428 TGTAAGACATGTCTGGGACATGCGTCGG-CTACGAGATGTTAGTCAG
1 TGTAAGACATGTCTGGGACATGCGTCGGCCT-CGAGACGTAAGCCAA
* *
85204474 TATTAGATCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
85204497 GCTTCCACTT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
45 2 0.04
46 40 0.70
47 15 0.26
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCGTCGGCCTCGAGACGTAAGCCAA
Found at i:85206598 original size:28 final size:28
Alignment explanation
Indices: 85206557--85206625 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
85206547 TTTAAAACCC
*
85206557 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
85206584 TATGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
85206612 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
85206626 TGATCTACGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 6 0.16
28 32 0.84
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:85208492 original size:19 final size:18
Alignment explanation
Indices: 85208455--85208498 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85208445 ATACATACAG
85208455 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
85208472 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
85208491 TACTAATT
1 TAATAATT
85208499 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:85213158 original size:41 final size:43
Alignment explanation
Indices: 85213098--85213224 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
85213088 CATAGGATTC
*
85213098 CGATATGTG-TTATCATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATATGATTA-CATGTAAGACCACGTCTGGGACATTGGCAT
* * * *
85213141 -G-TATATGATTTCGTGTAAGACC-CTGTCTGGGATAGTGGCAT
1 CGATATATGATTACATGTAAGACCAC-GTCTGGGACATTGGCAT
* * *
85213182 CGATATTTGATTACATGTAAGACCACGTCTGAGACGTTGGCAT
1 CGATATATGATTACATGTAAGACCACGTCTGGGACATTGGCAT
85213225 TGTACGAGCT
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
40 1 0.01
41 30 0.45
42 4 0.06
43 31 0.46
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
CGATATATGATTACATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:85213205 original size:43 final size:43
Alignment explanation
Indices: 85213098--85213212 Score: 130
Period size: 41 Copynumber: 2.7 Consensus size: 43
85213088 CATAGGATTC
* *
85213098 CGATATGTG-TTATCATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATATGATTA-CATGTAAGACCACGTCTGGGACAGTGGCAT
* * *
85213141 -G-TATATGATTTCGTGTAAGACC-CTGTCTGGGATAGTGGCAT
1 CGATATATGATTACATGTAAGACCAC-GTCTGGGACAGTGGCAT
*
85213182 CGATATTTGATTACATGTAAGACCACGTCTG
1 CGATATATGATTACATGTAAGACCACGTCTG
85213213 AGACGTTGGC
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
40 1 0.02
41 30 0.51
42 4 0.07
43 23 0.39
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
CGATATATGATTACATGTAAGACCACGTCTGGGACAGTGGCAT
Found at i:85215331 original size:46 final size:47
Alignment explanation
Indices: 85215183--85215497 Score: 267
Period size: 46 Copynumber: 6.7 Consensus size: 47
85215173 TACTTGTGTT
* *
85215183 CCAGTGTAAGACATGTTTGGGACAT-GCATCGG-CTAC-ATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGGCATCGGCCT-CGA-GATGAGAG
* * * *
85215229 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAG
1 CCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGATGAGAG
*
85215277 CTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AG
1 CCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATG-AGAG
*
85215323 CCAGTGTAAGACATGTCTGGGACAT-GCATCGG-CTACGAGAT--GTG
1 CCAGTGTAAGACATGTCTGGGACATGGCATCGGCCT-CGAGATGAGAG
* ** * ** * *
85215367 TCAGTGTAAGACCATGTCTGGGACATGGTGTCAGCCTCGATTTCAATAG
1 CCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGAT-GAGAG
* * * *
85215416 TCAGTGTAAGACCGTGTCTGGGACATGGCATC-GACT--TGATGGATGAG
1 CCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGAT-GA-GAG
85215463 CCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 CCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
85215498 ATTATACCAT
Statistics
Matches: 219, Mismatches: 34, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.05
45 16 0.07
46 74 0.34
47 60 0.27
48 26 0.12
49 32 0.15
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
CCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGAGAG
Found at i:85215435 original size:140 final size:138
Alignment explanation
Indices: 85215183--85215497 Score: 345
Period size: 140 Copynumber: 2.2 Consensus size: 138
85215173 TACTTGTGTT
* *
85215183 CCAGTGTAAGACATGTTTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGAT-AGAGCCAGTGTAAGACCATGTCT
* * *
85215248 GGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCT
65 GGGACATGGCATCGACATCGAGACAAGAGCTAGTGTAAGACATGTCTGGGACATGGCATC-GACT
85215312 CGA-GATGTAAG
129 CGAGGATG--AG
* *
85215323 CCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GTGTCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-ATGATAGAGCCAGTGTAAGACCATGTCT
** * ** * *
85215386 GGGACATGGTGTC-AGCCTCGATTTCAATAG-TCAGTGTAAGACCGTGTCTGGGACATGGCATCG
65 GGGACATGGCATCGA-CATCGA-GACAAGAGCT-AGTGTAAGA-CATGTCTGGGACATGGCATCG
*
85215449 ACTTGATGGATGAG
126 ACTCGA-GGATGAG
85215463 CCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 CCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
85215498 ATTATACCAT
Statistics
Matches: 150, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
137 1 0.01
138 36 0.24
139 13 0.09
140 69 0.46
141 19 0.13
142 12 0.08
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (138 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGACATCGAGACAAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTCG
AGGATGAG
Found at i:85224039 original size:28 final size:28
Alignment explanation
Indices: 85224003--85224072 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
85223993 ATAGTAAGTC
* *
85224003 CGCACACTTAGTGCT-TAATAATCAAAGT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
* *
85224031 CGTACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
85224059 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85224073 CAATCTCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 35 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:85224614 original size:2 final size:2
Alignment explanation
Indices: 85224607--85224642 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
85224597 GGCATACATT
85224607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85224643 GCCGAATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:85227097 original size:28 final size:29
Alignment explanation
Indices: 85227065--85227163 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
85227055 ATAATAAGCC
*
85227065 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
85227093 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
85227121 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
85227150 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85227164 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:85235105 original size:28 final size:29
Alignment explanation
Indices: 85235073--85235171 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
85235063 ATAATAAGCC
*
85235073 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
85235101 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
85235129 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
85235158 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85235172 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:85239284 original size:46 final size:46
Alignment explanation
Indices: 85239234--85239404 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
85239224 GTTGAGCATT
* * *
85239234 CGAACTCGTTGAGTTGAGTCCAAGCTCACTTATGGATGCGAATGTC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
85239280 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* *
85239327 CGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
*
85239373 CGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTA
85239405 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.54
47 28 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:85239393 original size:93 final size:93
Alignment explanation
Indices: 85239229--85239399 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
85239219 GGATGGTTGA
* * * *
85239229 GCATTCGAACTCGTTGAGTTGAGTCCAAGCTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCAAGCTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
85239294 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
85239322 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCAAGCTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
85239387 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85239400 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCAAGCTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85239666 original size:19 final size:20
Alignment explanation
Indices: 85239629--85239666 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
85239619 ATTAGGTGGT
85239629 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
85239649 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
85239667 TGCTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:85244830 original size:46 final size:46
Alignment explanation
Indices: 85244780--85244952 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
85244770 TGGTTGAGCA
85244780 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85244826 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
85244871 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85244919 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85244953 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85244936 original size:93 final size:93
Alignment explanation
Indices: 85244777--85244947 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
85244767 GGATGGTTGA
* * *
85244777 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
85244842 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
85244870 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
85244935 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85244948 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85250414 original size:47 final size:47
Alignment explanation
Indices: 85250296--85250468 Score: 191
Period size: 45 Copynumber: 3.7 Consensus size: 47
85250286 GGATGGTTGA
*
85250296 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
85250344 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
85250387 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
85250436 -C-GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
85250469 TAGGGGCGGG
Statistics
Matches: 108, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 33 0.31
46 30 0.28
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:85252980 original size:41 final size:40
Alignment explanation
Indices: 85252910--85253025 Score: 106
Period size: 41 Copynumber: 2.9 Consensus size: 40
85252900 TTATAGTGAT
* * * *
85252910 TCGCACAATTGCTTTCGGGAATTAGCCCGGATTTAATATC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAATAAC
* * * **
85252950 TCGACACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCG-CACAAATGCCTTCGGGAATTAACCCGGATTTAATAAC
* * * *
85252991 TCGCACAAATGCCTTCAGGAGTTGACCCAGATTTA
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTA
85253026 GTCACTTAGC
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
40 28 0.47
41 31 0.53
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAATAAC
Found at i:85260756 original size:28 final size:27
Alignment explanation
Indices: 85260695--85260763 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 27
85260685 ATAGTGAGTC
*
85260695 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
85260722 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
85260750 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85260764 CATTCTCATG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:85261454 original size:16 final size:16
Alignment explanation
Indices: 85261433--85261470 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
85261423 TCACATATAA
85261433 CTACATTTCTTAAGTT
1 CTACATTTCTTAAGTT
85261449 CTACATTTCTTAAGTT
1 CTACATTTCTTAAGTT
85261465 CTACAT
1 CTACAT
85261471 CTTAATGCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.47
Consensus pattern (16 bp):
CTACATTTCTTAAGTT
Found at i:85263031 original size:27 final size:27
Alignment explanation
Indices: 85263008--85263142 Score: 180
Period size: 27 Copynumber: 5.0 Consensus size: 27
85262998 CAAAATTATT
* *
85263008 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
85263035 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
85263062 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
85263089 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
85263116 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
85263143 ATTTTGCCCC
Statistics
Matches: 94, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:85263415 original size:27 final size:27
Alignment explanation
Indices: 85263327--85263442 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
85263317 ATGGAGGAAG
85263327 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
*
85263354 TGTTTCTAGTGGCTATGCCACAAATATC
1 TG-TTCTGGTGGCTATGCCACAAATATC
* * *
85263382 TGTTCTGGTGGCTCTACCA-TAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
* * *
85263408 TGTATCTGGTGACTCTGTCAC-AATATC
1 TGT-TCTGGTGGCTATGCCACAAATATC
85263435 TGTTCTGG
1 TGTTCTGG
85263443 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 14 0.18
27 38 0.49
28 26 0.33
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
TGTTCTGGTGGCTATGCCACAAATATC
Found at i:85263569 original size:6 final size:6
Alignment explanation
Indices: 85263560--85263613 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
85263550 TTGCATTCAC
* * *
85263560 ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
85263609 ATTCT
1 ATTCT
85263614 AGTTCTTATA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 2 0.05
6 33 0.85
7 2 0.05
8 2 0.05
ACGTcount: A:0.19, C:0.20, G:0.11, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:85265949 original size:15 final size:15
Alignment explanation
Indices: 85265929--85265961 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
85265919 TCGAATCCAG
85265929 AACTTCAGCACAA-AA
1 AACTTCA-CACAACAA
85265944 AACTTCACACAACAA
1 AACTTCACACAACAA
85265959 AAC
1 AAC
85265962 ATCCAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.55, C:0.30, G:0.03, T:0.12
Consensus pattern (15 bp):
AACTTCACACAACAA
Found at i:85267735 original size:48 final size:48
Alignment explanation
Indices: 85267660--85267752 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
85267650 ATAACAATCA
* * * *
85267660 CATAGGTCTGAGAGTTATTGAATCTAGAGTTTTTTATAATTGAAAGCT
1 CATAGCTCTGAGAGTTATTGAACCTAGAGCTTTGTATAATTGAAAGCT
85267708 CATAGCTCTGAGAGTTATTGAACCTAGAGCTTTGTATAATTGAAA
1 CATAGCTCTGAGAGTTATTGAACCTAGAGCTTTGTATAATTGAAA
85267753 ACTCCTATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (48 bp):
CATAGCTCTGAGAGTTATTGAACCTAGAGCTTTGTATAATTGAAAGCT
Found at i:85276281 original size:15 final size:15
Alignment explanation
Indices: 85276230--85276283 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
85276220 AATTTAAAAT
*
85276230 AAAATATA-TAATAA
1 AAAATATATTTATAA
85276244 AAAATATATTTATAA
1 AAAATATATTTATAA
85276259 GAATAATA-ATTATATAA
1 -AA-AATATATT-TATAA
85276276 AAAATATA
1 AAAATATA
85276284 AAATATATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 8 0.24
15 9 0.26
16 8 0.24
17 9 0.26
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (15 bp):
AAAATATATTTATAA
Found at i:85276823 original size:17 final size:18
Alignment explanation
Indices: 85276766--85276854 Score: 121
Period size: 17 Copynumber: 4.9 Consensus size: 18
85276756 AATCATATCT
85276766 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
*
85276785 TCTAAGATTGCA-ATCGTA
1 TCTAAGATTG-ATATCATA
85276803 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
85276820 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
85276837 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
85276855 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 32 0.50
18 15 0.23
19 17 0.27
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:85276862 original size:34 final size:36
Alignment explanation
Indices: 85276766--85276854 Score: 128
Period size: 35 Copynumber: 2.5 Consensus size: 36
85276756 AATCATATCT
*
85276766 TCTAAGATTGTATATCATATCTAAGATTGCAATCGTA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
*
85276803 TCTAAGATTG-TATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
85276837 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
85276855 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
34 15 0.31
35 17 0.35
36 6 0.12
37 10 0.21
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:85277474 original size:83 final size:83
Alignment explanation
Indices: 85277244--85277596 Score: 580
Period size: 83 Copynumber: 4.2 Consensus size: 83
85277234 TTCTATTTGT
* * * *
85277244 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAATATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
85277309 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
85277327 AAGGATGCCTAAACCATCTTGGGTTTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
85277392 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
* *
85277411 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTACAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
85277476 TTTGTTCCTTGTAAACAC
66 TTTGTTCCTTGTAAGCAC
* *
85277494 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCCATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
85277559 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
85277577 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
85277597 GATCTGCTTC
Statistics
Matches: 252, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 176 0.70
84 76 0.30
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:85277732 original size:119 final size:119
Alignment explanation
Indices: 85277520--85277999 Score: 798
Period size: 119 Copynumber: 4.0 Consensus size: 119
85277510 CTTGAGTCTG
* * * * * * *
85277520 TTTGAGAACATTTGAGAGTCATATCTGCCATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
85277585 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
85277639 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
85277704 CAAATCATCTTGGATCTACTTCAATATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
85277758 TTTGAGAACGTCGGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
85277823 CAAATCATCATGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
85277877 TTTGAGAACGTCTGAGAGTCAAATCTTCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
85277942 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
85277996 TTTG
1 TTTG
85278000 TAATATCCTG
Statistics
Matches: 339, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 339 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:85279347 original size:46 final size:45
Alignment explanation
Indices: 85279294--85279469 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
85279284 TGGTTGGGCA
85279294 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
85279340 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
85279387 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
85279433 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACCTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85279470 GCTGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Done.