Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 275 of 438
Found at i:85641936 original size:22 final size:22
Alignment explanation
Indices: 85641894--85641937 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
85641884 AATTATTTAC
* *
85641894 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
85641916 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
85641938 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:85642237 original size:40 final size:40
Alignment explanation
Indices: 85642163--85642343 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
85642153 AACCCAAGTA
* * *
85642163 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
*
85642202 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
* *
85642242 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
85642282 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
85642322 CCTTCGGGACTTAG-CCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
85642344 CATTCGAATA
Statistics
Matches: 131, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 20 0.15
40 108 0.82
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:85642295 original size:80 final size:79
Alignment explanation
Indices: 85642163--85642343 Score: 310
Period size: 80 Copynumber: 2.3 Consensus size: 79
85642153 AACCCAAGTA
* * *
85642163 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
85642228 CAATAGCACAAAAG
66 CAATAGCACAAAAG
85642242 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAG-CCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
85642306 GTCAATAGCACAAAAG
64 GTCAATAGCACAAAAG
85642322 CCTTCGGGACTTAGCCGGATAT
1 CCTTCGGGACTTAGCCGGATAT
85642344 CATTCGAATA
Statistics
Matches: 97, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
79 21 0.22
80 75 0.77
81 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAG
Found at i:85648743 original size:22 final size:22
Alignment explanation
Indices: 85648717--85648760 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
85648707 AATTATTTAC
*
85648717 GACTAAA-GTATAGCATTCATAT
1 GACTAAATGAATAGC-TTCATAT
85648739 GACTAAATGAATAGCTTCATAT
1 GACTAAATGAATAGCTTCATAT
85648761 ACGCATATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (22 bp):
GACTAAATGAATAGCTTCATAT
Found at i:85649108 original size:40 final size:40
Alignment explanation
Indices: 85648986--85649166 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
85648976 AACCCAAGTA
* * *
85648986 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
*
85649025 CCTTCGGGTCTTAGCCCGGATATAGT-AATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
* * *
85649064 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
85649104 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
*
85649144 CCTTCGGGACTTAGCCTGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
85649167 CATTTGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
39 45 0.35
40 82 0.65
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:85649117 original size:79 final size:80
Alignment explanation
Indices: 85648986--85649159 Score: 282
Period size: 79 Copynumber: 2.2 Consensus size: 80
85648976 AACCCAAGTA
* * * *
85648986 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
85649050 T-AATAGCACAAAAG
66 TCAATAGCACAAAAG
85649064 CCTTCGGGACTTAGCCCAGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCAGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
85649128 GTCAATAGCACAAAAG
65 GTCAATAGCACAAAAG
85649144 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
85649160 TGGATATCAT
Statistics
Matches: 89, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
78 13 0.15
79 46 0.52
80 30 0.34
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:85651054 original size:41 final size:41
Alignment explanation
Indices: 85650997--85651079 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
85650987 CATAGAAAAT
85650997 AATGGTTCTTTATTTTTATAACTCGGTTTTGTGGTCCCGAA
1 AATGGTTCTTTATTTTTATAACTCGGTTTTGTGGTCCCGAA
*
85651038 AATGGTTCTTTTTTTTTATAACTCGGTTTTGTGGTCCCGAA
1 AATGGTTCTTTATTTTTATAACTCGGTTTTGTGGTCCCGAA
85651079 A
1 A
85651080 CCACTTTCCG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.47
Consensus pattern (41 bp):
AATGGTTCTTTATTTTTATAACTCGGTTTTGTGGTCCCGAA
Found at i:85653698 original size:50 final size:50
Alignment explanation
Indices: 85653576--85653869 Score: 209
Period size: 50 Copynumber: 5.8 Consensus size: 50
85653566 TTGTAACCGA
* * * * * ***
85653576 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTGCATATGCGACC-
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT
** * **
85653625 AAGAATTTGATACACGTAGTAGCCTATACTTAGTACTACACACATGACCT
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT
* * * *
85653675 AACCATCTGATACACGTAGTAGCCTGCACTTAGTATTACATACATGA-TT
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT
* * * * * * *
85653724 GAAGTTGTCGGGTACGCATAGTAGCCTGCACTTAGTACT--GCACATGCAACCT
1 -AA-CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG--ACCT
* *
85653776 AACTATCAGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT
* * * * * * *
85653826 AAAACCATCTTAAAAACATAGTAGCTTGCACATAGTACTACACA
1 --AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
85653870 TGTGTTCTCA
Statistics
Matches: 188, Mismatches: 47, Indels: 17
0.75 0.19 0.07
Matches are distributed among these distances:
49 42 0.22
50 76 0.40
51 30 0.16
52 40 0.21
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (50 bp):
AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT
Found at i:85653790 original size:101 final size:100
Alignment explanation
Indices: 85653641--85653822 Score: 258
Period size: 101 Copynumber: 1.8 Consensus size: 100
85653631 TTGATACACG
* *
85653641 TAGTAGCCTATACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACACA-GACCTAACCATCAGATACACGTAGTAGCCTGCACTT
* *
85653706 AGTATTACATACATGATTGAAGTTGTCGGGTACGCA
65 AGTACTACACACATGATTGAAGTTGTCGGGTACGCA
* * * *
85653742 TAGTAGCCTGCACTTAGTACTGCACATGCA-ACCTAACTATCAGGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACA--CAGACCTAACCATCAGATACACGTAGTAGCCTGCACT
85653806 TAGTACTACACACATGA
64 TAGTACTACACACATGA
85653823 CCTAAAACCA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
101 69 0.97
103 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTACACTTAGTACTACACACAGACCTAACCATCAGATACACGTAGTAGCCTGCACTTA
GTACTACACACATGATTGAAGTTGTCGGGTACGCA
Found at i:85653871 original size:151 final size:149
Alignment explanation
Indices: 85653584--85653871 Score: 389
Period size: 151 Copynumber: 1.9 Consensus size: 149
85653574 GAAACTATCT
* * * **
85653584 GGTACGCATAGTAGCCTGCACTTAGTACTGCATATGCGACCAAGAATTTGATACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCAACCAACAATCAGATACACGTAGTAGCC
* * * * * *
85653649 TATACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTATTAC
66 TACACTTAGTACTACACACATGACCTAACCATCTGAAAAACATAGTAGCCTGCACATAGTACTAC
85653714 ATACATGATTGAAGTTGTCG
131 A-ACATGATTGAAGTTGTCG
* *
85653734 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCAACCTAACTATCAGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCAACC-AACAATCAGATACACGTAGTAGC
* * *
85653799 CTGCACTTAGTACTACACACATGACCTAAAACCATCTTAAAAACATAGTAGCTTGCACATAGTAC
65 CTACACTTAGTACTACACACATGACCT--AACCATCTGAAAAACATAGTAGCCTGCACATAGTAC
85653864 TAC-ACATG
128 TACAACATG
85653872 TGTTCTCACG
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
150 39 0.33
151 48 0.40
153 32 0.27
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (149 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCAACCAACAATCAGATACACGTAGTAGCC
TACACTTAGTACTACACACATGACCTAACCATCTGAAAAACATAGTAGCCTGCACATAGTACTAC
AACATGATTGAAGTTGTCG
Found at i:85663468 original size:40 final size:40
Alignment explanation
Indices: 85663398--85663638 Score: 308
Period size: 40 Copynumber: 6.0 Consensus size: 40
85663388 GGATTTAACT
* *
85663398 GGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
85663437 GGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
85663477 GGATATAGTAGCTCACACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
85663517 GGATGTAATAACTCGAACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
85663557 GGATATAGTAGCTCGCACAAATGCCTTCAGCACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * * *
85663597 GGA-ACTAGTCACTAGCGCAAATGCCTTCAGGACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
85663637 GG
1 GG
85663639 TTATCATCCA
Statistics
Matches: 178, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 16 0.09
40 161 0.90
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:85665022 original size:61 final size:62
Alignment explanation
Indices: 85664886--85665022 Score: 183
Period size: 61 Copynumber: 2.2 Consensus size: 62
85664876 CTCAAAGCTC
* *
85664886 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTCTCTTCTTTTT
1 TTTTTCC-T-TTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTTCTCTTCTTTTT
*
85664950 TTTTTTC-TTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTT-T-TT-TTTCTT
1 TTTTTCCTTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTTCTCTTCTTT-TT
85665009 TCTTTTCCTTTTTT
1 T-TTTTCCTTTTTT
85665023 TCATCATCAT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
58 3 0.05
59 5 0.08
60 6 0.09
61 46 0.70
64 6 0.09
ACGTcount: A:0.15, C:0.22, G:0.08, T:0.55
Consensus pattern (62 bp):
TTTTTCCTTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTTCTCTTCTTTTT
Found at i:85671648 original size:40 final size:40
Alignment explanation
Indices: 85671555--85671811 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
85671545 AAGCCAAGTA
* * *
85671555 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
85671593 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
85671633 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
85671673 CCTTCGGGACTTAGCCCGGATGTAATAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85671713 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
85671753 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
85671793 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
85671812 TTATCATCCG
Statistics
Matches: 194, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
38 12 0.06
39 20 0.10
40 161 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85673402 original size:71 final size:71
Alignment explanation
Indices: 85673302--85673464 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
85673292 CGATTTGTCT
85673302 CGTAGCTCTCTTGTC-ACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
85673366 CTTTCA
66 CTTTCA
85673372 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
85673437 CTTTCA
66 CTTTCA
85673443 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85673465 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 15 0.16
71 77 0.84
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:85673502 original size:71 final size:70
Alignment explanation
Indices: 85673302--85673498 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
85673292 CGATTTGTCT
* * *
85673302 CGTAGCTCTCTTGTC-ACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
85673366 CTTTCA
65 CTTTCA
* * *
85673372 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
85673437 CTTTCA
65 CTTTCA
* *
85673443 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
85673499 TACAGGGTGC
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 16 0.13
71 80 0.67
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.32
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:85675958 original size:59 final size:59
Alignment explanation
Indices: 85675829--85675942 Score: 192
Period size: 59 Copynumber: 1.9 Consensus size: 59
85675819 TCCTCAAAGC
** * *
85675829 TCTTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTCTCT
1 TCTTTTTTTTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTTCTCT
85675888 TCTTTTTTTTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTT
1 TCTTTTTTTTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTT
85675943 TTTTTTCTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.18, C:0.24, G:0.10, T:0.48
Consensus pattern (59 bp):
TCTTTTTTTTTCTTTTTCTTTCTTCTACTCGGCCAAGAACAACATGAGAACTTTTCTCT
Found at i:85686823 original size:42 final size:42
Alignment explanation
Indices: 85686774--85686905 Score: 140
Period size: 42 Copynumber: 3.1 Consensus size: 42
85686764 CATTACACGT
* *
85686774 GTGTCTCAGCCGTGTGTGCCACACGGACTAGAACACGGGCGA
1 GTGTCTCAGTCGTGTGTGCCACACGGCCTAGAACACGGGCGA
* * * * * *
85686816 GTGTCTCAGTCATGTGTTCCATATGGCCTAGAGCACGAGC-A
1 GTGTCTCAGTCGTGTGTGCCACACGGCCTAGAACACGGGCGA
* ** *
85686857 TGTGTCTCAGTCGTGTGTGCCACACAGCCTAGAACTTGGGCGT
1 -GTGTCTCAGTCGTGTGTGCCACACGGCCTAGAACACGGGCGA
85686900 GTGTCT
1 GTGTCT
85686906 TGGCCATGTG
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
41 1 0.01
42 69 0.99
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (42 bp):
GTGTCTCAGTCGTGTGTGCCACACGGCCTAGAACACGGGCGA
Found at i:85688050 original size:71 final size:71
Alignment explanation
Indices: 85687928--85688063 Score: 227
Period size: 71 Copynumber: 1.9 Consensus size: 71
85687918 AAGGGGACCG
*
85687928 GGGTTTGATACCCTTGCCATAAGTATCAGACTAAAATAAGTAAGTAACTAAAATGCTACAATATA
1 GGGTTTGATACCCTTGCCATAAGTATCAAACTAAAATAAGTAAGTAACTAAAATGCTACAATATA
85687993 GGCCCA
66 GGCCCA
* * * *
85687999 GGGTTTGATACCCTTGCCATAAGTATCAAACTGAAATAAGTCAGTAGCTAAAATGCTACATTATA
1 GGGTTTGATACCCTTGCCATAAGTATCAAACTAAAATAAGTAAGTAACTAAAATGCTACAATATA
85688064 AAGACTAGGT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (71 bp):
GGGTTTGATACCCTTGCCATAAGTATCAAACTAAAATAAGTAAGTAACTAAAATGCTACAATATA
GGCCCA
Found at i:85690331 original size:25 final size:25
Alignment explanation
Indices: 85690297--85690345 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
85690287 GTAATTTATT
*
85690297 AATATATAAATTAATATTATATATA
1 AATATATAAATAAATATTATATATA
*
85690322 AATATTTAAATAAATATTATATAT
1 AATATATAAATAAATATTATATAT
85690346 TTTTTATGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
AATATATAAATAAATATTATATATA
Found at i:85690339 original size:12 final size:12
Alignment explanation
Indices: 85690297--85690339 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
85690287 GTAATTTATT
* *
85690297 AATATATAAATT
1 AATATTTAAATA
*
85690309 AATATTATATATA
1 AATATT-TAAATA
85690322 AATATTTAAATA
1 AATATTTAAATA
85690334 AATATT
1 AATATT
85690340 ATATATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
AATATTTAAATA
Found at i:85691330 original size:21 final size:20
Alignment explanation
Indices: 85691296--85691340 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
85691286 CAAAACTTTT
* *
85691296 AAAAAATTTTAAAATTTAGA
1 AAAAAATTTAAAAAATTAGA
*
85691316 AAAAAAGTTTAAAAAATTATA
1 AAAAAA-TTTAAAAAATTAGA
85691337 AAAA
1 AAAA
85691341 TAATATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (20 bp):
AAAAAATTTAAAAAATTAGA
Found at i:85691396 original size:19 final size:19
Alignment explanation
Indices: 85691327--85691398 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
85691317 AAAAAGTTTA
85691327 AAAAATTATAAAAATAATATTT
1 AAAAA-TATAAAAATAATA--T
* *
85691349 AAAAGT-GAAAAA-AATAT
1 AAAAATATAAAAATAATAT
* *
85691366 AAAATTACAAAAATAATAT
1 AAAAATATAAAAATAATAT
85691385 AAAAATATAAAAAT
1 AAAAATATAAAAAT
85691399 TTTATTATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
17 6 0.14
18 5 0.12
19 21 0.50
20 5 0.12
21 1 0.02
22 4 0.10
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.26
Consensus pattern (19 bp):
AAAAATATAAAAATAATAT
Found at i:85691415 original size:20 final size:20
Alignment explanation
Indices: 85691392--85691430 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
85691382 TATAAAAATA
* *
85691392 TAAAAATTTTATTATTTTTT
1 TAAAAATATTAATATTTTTT
85691412 TAAAAATATTAATATTTTT
1 TAAAAATATTAATATTTTT
85691431 AGGTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TAAAAATATTAATATTTTTT
Found at i:85691553 original size:3 final size:3
Alignment explanation
Indices: 85691547--85691600 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
85691537 AGTAGTATAG
*
85691547 ATT ATT ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
85691595 ATT ATT
1 ATT ATT
85691601 TAAGAGACCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:85691729 original size:8 final size:9
Alignment explanation
Indices: 85691703--85691728 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
85691693 GTTTTAAATA
85691703 AATTTTTTT
1 AATTTTTTT
85691712 AATTTTTTT
1 AATTTTTTT
85691721 AATTTTTT
1 AATTTTTT
85691729 ATTCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
AATTTTTTT
Found at i:85715261 original size:43 final size:43
Alignment explanation
Indices: 85715209--85715294 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
85715199 GATCTATGAG
* *
85715209 GCATCCGAGCTCATTGAGAGGTTTGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGAGAGGTTCGAGTTCATAATGGATGCGA
*
85715252 GCATCCGAGCTCTTTGAGAGGTTCGAGTTCATAATGGATGCGA
1 GCATCCGAGCTCATTGAGAGGTTCGAGTTCATAATGGATGCGA
85715295 TTCATGTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGAGGTTCGAGTTCATAATGGATGCGA
Found at i:85721547 original size:23 final size:22
Alignment explanation
Indices: 85721515--85721654 Score: 93
Period size: 23 Copynumber: 6.1 Consensus size: 22
85721505 ATGTTGAAGT
85721515 GTATATTGGTTGTGTTTGGAGG
1 GTATATTGGTTGTGTTTGGAGG
** *
85721537 GTATACTTGGTTGT-TTTCAAAGCTT
1 GTATA-TTGGTTGTGTTT-GGAG--G
* * *
85721562 ATATATATGGTTTTGTTTAGAGG
1 GTATAT-TGGTTGTGTTTGGAGG
* *
85721585 GTATATTTTGTTATGTTTGGAGG
1 GTATA-TTGGTTGTGTTTGGAGG
*
85721608 GTACATATGGTTGTGTTTGGAGG
1 GTATAT-TGGTTGTGTTTGGAGG
* * * *
85721631 GTAAATTAGTTATGTTTGGTGG
1 GTATATTGGTTGTGTTTGGAGG
85721653 GT
1 GT
85721655 GATAGTTTTA
Statistics
Matches: 92, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
22 24 0.26
23 50 0.54
24 2 0.02
25 13 0.14
26 3 0.03
ACGTcount: A:0.19, C:0.03, G:0.31, T:0.46
Consensus pattern (22 bp):
GTATATTGGTTGTGTTTGGAGG
Found at i:85721631 original size:46 final size:45
Alignment explanation
Indices: 85721566--85721654 Score: 124
Period size: 46 Copynumber: 2.0 Consensus size: 45
85721556 AAGCTTATAT
* * *
85721566 ATATGGTTTTGTTTAGAGGGTATATTTTGTTATGTTTGGAGGGTAC
1 ATATGGTTGTGTTTAGAGGGTA-AATTAGTTATGTTTGGAGGGTAC
* *
85721612 ATATGGTTGTGTTTGGAGGGTAAATTAGTTATGTTTGGTGGGT
1 ATATGGTTGTGTTTAGAGGGTAAATTAGTTATGTTTGGAGGGT
85721655 GATAGTTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
45 18 0.47
46 20 0.53
ACGTcount: A:0.19, C:0.01, G:0.34, T:0.46
Consensus pattern (45 bp):
ATATGGTTGTGTTTAGAGGGTAAATTAGTTATGTTTGGAGGGTAC
Found at i:85726590 original size:40 final size:40
Alignment explanation
Indices: 85726464--85726592 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
85726454 ATGCTGGAAA
* *
85726464 TTAT-TCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
85726503 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
85726543 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
85726583 TTATATCCGG
1 TTATATCCGG
85726593 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 6 0.08
40 71 0.92
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:85734552 original size:40 final size:40
Alignment explanation
Indices: 85734425--85734554 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
85734415 ATGCTGGAAA
* *
85734425 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
85734465 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
85734505 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
85734545 TTATATCCGG
1 TTATATCCGG
85734555 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:85736363 original size:34 final size:34
Alignment explanation
Indices: 85736292--85736356 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
85736282 GATTGCATTT
85736292 CTGATACTGTTACTGATGTGGGCTAAGGCCCACA
1 CTGATACTGTTACTGATGTGGGCTAAGGCCCACA
*
85736326 CTGATACTGTTACTGTAT-TGGTCTAAGGCCC
1 CTGATACTGTTACTG-ATGTGGGCTAAGGCCC
85736357 TAACTGAGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (34 bp):
CTGATACTGTTACTGATGTGGGCTAAGGCCCACA
Found at i:85743086 original size:29 final size:29
Alignment explanation
Indices: 85743044--85743161 Score: 193
Period size: 29 Copynumber: 4.1 Consensus size: 29
85743034 GAAAGCGTGA
85743044 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
85743073 ATATGAATGTGATTTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
85743102 ATATGGATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
85743131 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
85743159 ATA
1 ATA
85743162 CGCATATATG
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 18 0.22
29 65 0.78
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:85743186 original size:57 final size:58
Alignment explanation
Indices: 85743062--85743176 Score: 153
Period size: 57 Copynumber: 2.0 Consensus size: 58
85743052 GTGATTTGGG
* * * * * * *
85743062 CCTAATGGGCCATATGAATGTGATTTGGGCCTAGTGGGCCATATGGATGTGATTTGGG
1 CCTAATGGGCCATATGAATGAGATTTGGGCCTAGTGGGCCATACGCATATGATGTAGA
85743120 CCTAATGGGCCATATGAATGAGA-TTGGGCCTAGTGGGCCATACGCATAT-ATGTAGA
1 CCTAATGGGCCATATGAATGAGATTTGGGCCTAGTGGGCCATACGCATATGATGTAGA
85743176 C
1 C
85743177 TTGTTTGGGC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 5 0.10
57 23 0.46
58 22 0.44
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (58 bp):
CCTAATGGGCCATATGAATGAGATTTGGGCCTAGTGGGCCATACGCATATGATGTAGA
Found at i:85744589 original size:21 final size:21
Alignment explanation
Indices: 85744563--85744617 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
85744553 GATACTATTT
*
85744563 AGCCACCGAGAGGTGTTTAGC
1 AGCCACCGAGAGGTGTTCAGC
* *
85744584 AGCCACTGAGAGGTGTTCCGC
1 AGCCACCGAGAGGTGTTCAGC
85744605 AGCCACCGAGAGG
1 AGCCACCGAGAGG
85744618 CCGTGGTCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.27, G:0.35, T:0.15
Consensus pattern (21 bp):
AGCCACCGAGAGGTGTTCAGC
Found at i:85746456 original size:40 final size:40
Alignment explanation
Indices: 85746401--85746481 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
85746391 ACACAGATCA
85746401 CAAGAGCCTTAAATATCTCCTCACTCAGAAGGAGTTAAAT
1 CAAGAGCCTTAAATATCTCCTCACTCAGAAGGAGTTAAAT
85746441 CAAGAGCCTTAAATATCTCCTCACTCAGAAGGAGTTAAAT
1 CAAGAGCCTTAAATATCTCCTCACTCAGAAGGAGTTAAAT
85746481 C
1 C
85746482 TTAGGCAGCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (40 bp):
CAAGAGCCTTAAATATCTCCTCACTCAGAAGGAGTTAAAT
Found at i:85747997 original size:29 final size:29
Alignment explanation
Indices: 85747965--85748042 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
85747955 ATACCCTCCG
** *
85747965 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
85747994 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
85748023 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
85748043 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:85755852 original size:29 final size:29
Alignment explanation
Indices: 85755820--85755897 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
85755810 ATACCCTCCG
** *
85755820 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
85755849 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
85755878 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
85755898 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:85778178 original size:13 final size:13
Alignment explanation
Indices: 85778158--85778187 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
85778148 AAGAAAATAA
85778158 AAAT-AAAAAATT
1 AAATAAAAAAATT
85778170 AAATAAAAAAATT
1 AAATAAAAAAATT
85778183 AAATA
1 AAATA
85778188 TCGTATCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAATAAAAAAATT
Found at i:85783285 original size:47 final size:47
Alignment explanation
Indices: 85783165--85783461 Score: 459
Period size: 47 Copynumber: 6.3 Consensus size: 47
85783155 ACAAGATATG
85783165 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG--TATA
* ** *
85783214 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* **
85783261 TATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGGGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
85783308 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* **
85783355 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* *
85783402 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
85783449 TAAATGTGATAAG
1 TATATGTGATAAG
85783462 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 187 0.82
49 40 0.18
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:85783418 original size:141 final size:142
Alignment explanation
Indices: 85783165--85783461 Score: 533
Period size: 141 Copynumber: 2.1 Consensus size: 142
85783155 ACAAGATATG
85783165 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGTGATAGGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-ATATATATATGTGATAGGGCC
*
85783230 GAGCGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGA
65 GAGCGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGA
85783295 ATGTGAAAGGGTA
130 ATGTGAAAGGGTA
85783308 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-TATATATATGTGATAGGGCCG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGATATATATATGTGATAGGGCCG
* *
85783372 AGCGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGGA
66 AGCGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAA
*
85783437 TGTGAAAGTGTA
131 TGTGAAAGGGTA
*
85783449 TAAATGTGATAAG
1 TATATGTGATAAG
85783462 TCCCGAAGGG
Statistics
Matches: 149, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 106 0.71
143 43 0.29
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (142 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGATATATATATGTGATAGGGCCG
AGCGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAA
TGTGAAAGGGTA
Found at i:85787134 original size:42 final size:42
Alignment explanation
Indices: 85787069--85787149 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
85787059 GTGTAGCTTT
* *
85787069 CACACGGCCAAGATACACACCTGTGT-TCTAGGCCATGTGTTA
1 CACACGGCCAAGACACACACCTGTGTCTCTA-CCCATGTGTTA
** *
85787111 CACACGGCTGAGACACACGCCTGTGTCTCTACCCATGTG
1 CACACGGCCAAGACACACACCTGTGTCTCTACCCATGTG
85787150 CCCAATTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 29 0.88
43 4 0.12
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.22
Consensus pattern (42 bp):
CACACGGCCAAGACACACACCTGTGTCTCTACCCATGTGTTA
Found at i:85794672 original size:40 final size:39
Alignment explanation
Indices: 85794627--85794834 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
85794617 CGGAATACAA
*
85794627 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85794667 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85794707 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85794747 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
85794787 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85794827 CCGGATAT
1 CCGGATAT
85794835 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85794767 original size:80 final size:81
Alignment explanation
Indices: 85794627--85794832 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
85794617 CGGAATACAA
* * *
85794627 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
85794691 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
85794707 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
85794770 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
85794787 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
85794833 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:85802742 original size:40 final size:39
Alignment explanation
Indices: 85802697--85802904 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
85802687 CGGAATACAA
*
85802697 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85802737 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85802777 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85802817 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
85802857 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85802897 CCGGATAT
1 CCGGATAT
85802905 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85802837 original size:80 final size:81
Alignment explanation
Indices: 85802697--85802902 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
85802687 CGGAATACAA
* * *
85802697 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
85802761 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
85802777 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
85802840 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
85802857 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
85802903 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:85804809 original size:56 final size:56
Alignment explanation
Indices: 85804749--85805007 Score: 358
Period size: 56 Copynumber: 4.6 Consensus size: 56
85804739 ACCTGGAAGT
* * * *
85804749 ATATGTGACTCCGATATATGTTTGCGAGTAAGTCCACGTTTCATATGTTGGCATCG
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* **
85804805 ATATGTGACT-TCGATATATGTGTGCAAGTAAGTTCACGTTTCATACGTTGGCATCG
1 ATATGTGACTCT-GATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* * *
85804861 ATATGTGACTCTGATATACGTGTGGGAGTAAGACCACGTTTCATATGTTGGCATCG
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* *
85804917 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCG
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* * * *
85804973 ATATGTGATTCTGATATGTGTTTACGAGTAAGACC
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACC
85805008 CTGTCTCGGA
Statistics
Matches: 181, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
56 180 0.99
57 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (56 bp):
ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
Found at i:85805025 original size:112 final size:112
Alignment explanation
Indices: 85804749--85805036 Score: 323
Period size: 112 Copynumber: 2.6 Consensus size: 112
85804739 ACCTGGAAGT
* * * * * * *
85804749 ATATGTGACTCCGATATATGTTTGCGAGTAAGTCCACGTTTCATATGTTGGCATCGATATGTGAC
1 ATATGTGACTCTGATATACGTGTACGAGTAAGACCACGTCTCACATGTTGGCATCGATATGTGAC
** *
85804814 TTCGATATATGTGTGCAAGTAAGTTCACGTTTCATACGTTGGCATCG
66 TTCGATATATGTGTGCAAGTAAGACCACATTTCATACGTTGGCATCG
** * *
85804861 ATATGTGACTCTGATATACGTGTGGGAGTAAGACCACGTTTCATATGTTGGCATCGATATGTGAC
1 ATATGTGACTCTGATATACGTGTACGAGTAAGACCACGTCTCACATGTTGGCATCGATATGTGAC
* *
85804926 -TCTGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCG
66 TTC-GATATATGTGTGCAAGTAAGACCACATTTCATACGTTGGCATCG
* ** * *
85804973 ATATGTGATTCTGATATGTGTTTACGAGTAAGACC-CTGTCTCGGACA-G-TGGCATTGATATGT
1 ATATGTGACTCTGATATACGTGTACGAGTAAGACCAC-GTCTC--ACATGTTGGCATCGATATGT
85805035 GA
63 GA
85805037 TTACATGTAA
Statistics
Matches: 153, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
111 3 0.02
112 147 0.96
113 1 0.01
114 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (112 bp):
ATATGTGACTCTGATATACGTGTACGAGTAAGACCACGTCTCACATGTTGGCATCGATATGTGAC
TTCGATATATGTGTGCAAGTAAGACCACATTTCATACGTTGGCATCG
Found at i:85810988 original size:27 final size:27
Alignment explanation
Indices: 85810946--85811118 Score: 193
Period size: 27 Copynumber: 6.4 Consensus size: 27
85810936 TGGATAAGTT
**
85810946 GTAGAATTACCGAAATACCTTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
85810973 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
85811000 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ** *
85811027 TTAGAATTACTAAAATACCCGTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
85811054 GTAGAAATACCGACATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * ** *
85811081 GTAGAATTATCGAGATACCTTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
85811108 GTAAAATTACC
1 GTAGAATTACC
85811119 ATATTGCCCC
Statistics
Matches: 122, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:85811116 original size:81 final size:81
Alignment explanation
Indices: 85810958--85811117 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 81
85810948 AGAATTACCG
**
85810958 AAATACCTTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTG
1 AAATACCCGTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTG
* *
85811023 TAGGTTAGAATTACTA
66 TAGGGTAAAATTACTA
* * * **
85811039 AAATACCCGTGTAGGGTAGAAATACCGACATACCCCTGTAGGGTAGAATTA-TCGAGATACCTTT
1 AAATACCCGTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCT
*
85811103 GTGGGGTAAAATTAC
65 GTAGGGTAAAATTAC
85811118 CATATTGCCC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 67 0.99
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
AAATACCCGTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTG
TAGGGTAAAATTACTA
Found at i:85811922 original size:96 final size:100
Alignment explanation
Indices: 85811765--85812023 Score: 316
Period size: 96 Copynumber: 2.6 Consensus size: 100
85811755 CAATCTGGTG
* * * *
85811765 GCCTCGCCACATATATCTGTTCTGATGACTTTGACACAATATCTGGCAGCCTCACTGCAATCTGG
1 GCCTCGCCACA-ATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATCTGG
85811830 TGGCTTCG-C-CAC-ATATATAT-T-TGTTCTGGAA
65 TGGCTTCGCCACACAATATATATATCTGTTCTGGAA
*
85811861 GCCTCGCCACAGATATCTGTTCTGGTGACTTCGTCACAATATCTGGTAGCCTCGCTGCAATCTGG
1 GCCTCGCCACA-ATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATCTGG
**
85811926 TGGCTTCGCCACACACATATATATATATCTGTTCTGGTG
65 TGGCTTCG-C-CACACA-ATATATATATCTGTTCTGGAA
* * * *
85811965 GCAT--CCACAATATCTGTATCTGGTGACTTCGTCACTATATCTGGCAGCCTTGCTACAAT
1 GCCTCGCCACAATATCTGT-TCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAAT
85812024 TTCTGTGGTG
Statistics
Matches: 141, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
96 67 0.48
99 1 0.01
100 3 0.02
101 8 0.06
102 50 0.35
103 1 0.01
104 11 0.08
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (100 bp):
GCCTCGCCACAATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATCTGGT
GGCTTCGCCACACAATATATATATCTGTTCTGGAA
Found at i:85812007 original size:27 final size:24
Alignment explanation
Indices: 85811949--85812007 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
85811939 CACATATATA
*
85811949 TATATCTGTTCTGGTGGCATCCAC
1 TATATCTGTTCTGGTGACATCCAC
* *
85811973 AATATCTGTATCTGGTGACTTCGTCAC
1 TATATCTGT-TCTGGTGACATC--CAC
85812000 TATATCTG
1 TATATCTG
85812008 GCAGCCTTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 8 0.29
25 10 0.36
27 10 0.36
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (24 bp):
TATATCTGTTCTGGTGACATCCAC
Found at i:85813851 original size:118 final size:118
Alignment explanation
Indices: 85813657--85813925 Score: 415
Period size: 118 Copynumber: 2.3 Consensus size: 118
85813647 ACCTGGAAGT
* *
85813657 ATATGTGACTCCGATATATGTGTGCGAGT---A--A-GTCAACGTTTCATACGTTGGCATCGATA
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTCAACGGTTCATACGTTGGCATCGATA
* * *
85813716 TGTTACTCTGATATATGTGTGTGAGTAAGTCCACGTTTCATACGTTGGCATCG
66 TGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* *
85813769 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTCCACGGTTCATACGTTGGCGTCGATA
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTCAACGGTTCATACGTTGGCATCGATA
*
85813834 TGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATATGTTGGCATCG
66 TGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
*
85813887 ATATGTGACTCTGATATATGTGTGTGAGTAAGACCACGT
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGT
85813926 TTTGTACGTT
Statistics
Matches: 142, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
112 28 0.20
115 1 0.01
117 1 0.01
118 112 0.79
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (118 bp):
ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTCAACGGTTCATACGTTGGCATCGATA
TGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
Found at i:85813973 original size:174 final size:174
Alignment explanation
Indices: 85813657--85813977 Score: 507
Period size: 174 Copynumber: 1.8 Consensus size: 174
85813647 ACCTGGAAGT
* *
85813657 ATATGTGACTCCGATATATGTGTGCGAGTAAGTCAACGTTTCATACGTTGGCATCGATATGTTAC
1 ATATGTGACTCCGATATATGTGTGCGAGTAAGACAACGTTTCATACGTTGGCATCGATATGTGAC
* * * *
85813722 TCTGATATATGTGTGTGAGTAAGTCCACGTTTCATACGTTGGCATCGATATGTGACTCTGATATA
66 TCTGATATATGTGTGTGAGTAAGACCACGTTTCATACGTTGGCATCAAAATGTGACTCCGATATA
*
85813787 TGTGTGCGAGTAAGACCACGTCCACGGTTCATACGTTGGCGTCG
131 TGTGTACGAGTAAGACCACGTCCACGGTTCATACGTTGGCGTCG
* * *
85813831 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATATGTTGGCATCGATATGTGAC
1 ATATGTGACTCCGATATATGTGTGCGAGTAAGACAACGTTTCATACGTTGGCATCGATATGTGAC
** * *
85813896 TCTGATATATGTGTGTGAGTAAGACCACGTTTTGTACGTTGGCATCAAAATGTGATTCCGATATG
66 TCTGATATATGTGTGTGAGTAAGACCACGTTTCATACGTTGGCATCAAAATGTGACTCCGATATA
*
85813961 TGTTTACGAGTAAGACC
131 TGTGTACGAGTAAGACC
85813978 TTGTTTGGGA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
174 132 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (174 bp):
ATATGTGACTCCGATATATGTGTGCGAGTAAGACAACGTTTCATACGTTGGCATCGATATGTGAC
TCTGATATATGTGTGTGAGTAAGACCACGTTTCATACGTTGGCATCAAAATGTGACTCCGATATA
TGTGTACGAGTAAGACCACGTCCACGGTTCATACGTTGGCGTCG
Found at i:85813975 original size:56 final size:56
Alignment explanation
Indices: 85813657--85813977 Score: 426
Period size: 56 Copynumber: 5.6 Consensus size: 56
85813647 ACCTGGAAGT
* * *
85813657 ATATGTGACTCCGATATATGTGTGCGAGTAAGTCAACGTTTCATACGTTGGCATCG
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* * *
85813713 ATATGTTACTCTGATATATGTGTGTGAGTAAGTCCACGTTTCATACGTTGGCATCG
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
*
85813769 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTCCACGGTTCATACGTTGGCGTCG
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGT------TTCATACGTTGGCATCG
*
85813831 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATATGTTGGCATCG
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* ** *
85813887 ATATGTGACTCTGATATATGTGTGTGAGTAAGACCACGTTTTGTACGTTGGCATCA
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
* * * * * *
85813943 AAATGTGATTCCGATATGTGTTTACGAGTAAGACC
1 ATATGTGACTCTGATATATGTGTGCGAGTAAGACC
85813978 TTGTTTGGGA
Statistics
Matches: 237, Mismatches: 22, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
56 182 0.77
62 55 0.23
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (56 bp):
ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTGGCATCG
Found at i:85814017 original size:43 final size:43
Alignment explanation
Indices: 85813955--85814041 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
85813945 ATGTGATTCC
* **
85813955 GATATGTGTTTACGAGTAAGACCTTGTTTGGGACAG-TGGCATT
1 GATATGTGATTACGAGTAAGACCACGTTTGGGAC-GTTGGCATT
85813998 GATATGTGATTAC-ATGTAAGACCACGTTTGGGACGTTGGCATT
1 GATATGTGATTACGA-GTAAGACCACGTTTGGGACGTTGGCATT
85814041 G
1 G
85814042 TACGATATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 2 0.05
43 37 0.95
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (43 bp):
GATATGTGATTACGAGTAAGACCACGTTTGGGACGTTGGCATT
Found at i:85815083 original size:2 final size:2
Alignment explanation
Indices: 85815076--85815101 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
85815066 TAATATGATG
85815076 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
85815102 ATTGCTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:85820458 original size:48 final size:47
Alignment explanation
Indices: 85820402--85820590 Score: 242
Period size: 48 Copynumber: 4.0 Consensus size: 47
85820392 CACGATGTCT
* *
85820402 CATATCGATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCC
1 CATATCGATGCCAATGCCATGTCCCAG-TATGGTCTTACATGGGATCA
* **
85820450 CATATCGATGCCAATGCCATGTCCAAAACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCC-CAGTATGGTCTTACATGGGATCA
* *
85820498 CATATCAATGCCAATGCGATGTCCC----TGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGTATGGTCTTACATGGGATCA
* *
85820541 CATATCGATGCTAATGCCATGTCCTAGTCATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGT-ATGGTCTTACATGGGATCA
85820589 CA
1 CA
85820591 CATAATCTTA
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
43 39 0.32
48 83 0.67
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (47 bp):
CATATCGATGCCAATGCCATGTCCCAGTATGGTCTTACATGGGATCA
Found at i:85824881 original size:20 final size:20
Alignment explanation
Indices: 85824853--85824899 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
85824843 TGACAATGTT
85824853 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
85824873 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
85824893 TAAGTTG
1 TAAGTTG
85824900 CAAGTTGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:85826328 original size:13 final size:13
Alignment explanation
Indices: 85826310--85826335 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85826300 ATTTTTTTAT
85826310 AAAATAATTAAAG
1 AAAATAATTAAAG
85826323 AAAATAATTAAAG
1 AAAATAATTAAAG
85826336 TGCACTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (13 bp):
AAAATAATTAAAG
Found at i:85833596 original size:24 final size:24
Alignment explanation
Indices: 85833563--85833624 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
85833553 AGGAACTATA
* *
85833563 TAACAAGATGCTCGAGAATATTTT
1 TAACAGGATGCTCGAGAAGATTTT
*
85833587 TAACAGGATGCTCGAGAAGGTTTT
1 TAACAGGATGCTCGAGAAGATTTT
*
85833611 TAATAGGATGCTCG
1 TAACAGGATGCTCG
85833625 TCCGAGCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (24 bp):
TAACAGGATGCTCGAGAAGATTTT
Found at i:85834593 original size:33 final size:33
Alignment explanation
Indices: 85834551--85834617 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
85834541 TTCAAATTTT
85834551 TCCATGGATGATTCATCAAAAATATCTACTAAC
1 TCCATGGATGATTCATCAAAAATATCTACTAAC
*
85834584 TCCATGGATGATTCATCAAAAATATCTATTAAC
1 TCCATGGATGATTCATCAAAAATATCTACTAAC
85834617 T
1 T
85834618 TTTCTTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (33 bp):
TCCATGGATGATTCATCAAAAATATCTACTAAC
Found at i:85838840 original size:13 final size:13
Alignment explanation
Indices: 85838822--85838854 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
85838812 AGTACACGGG
85838822 CGTGTGGCCTGGC
1 CGTGTGGCCTGGC
85838835 CGTGTGGCCTGGC
1 CGTGTGGCCTGGC
85838848 CGTGTGG
1 CGTGTGG
85838855 TATAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.00, C:0.27, G:0.48, T:0.24
Consensus pattern (13 bp):
CGTGTGGCCTGGC
Found at i:85839321 original size:42 final size:41
Alignment explanation
Indices: 85839262--85839365 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 41
85839252 ATGCTAATAG
* * ** *
85839262 CCCAGCTACGGTCTTACACAAAGTCTCATATGGCTGCCATAT
1 CCCAGATATGGTCTTACACAAA-TCTCATACCGATGCCATAT
* * *
85839304 CCTAGATATGGTCTTACACGGAATCTCATACCGATGTCATAT
1 CCCAGATATGGTCTTACAC-AAATCTCATACCGATGCCATAT
85839346 CCCAGATATGGTCTTACACA
1 CCCAGATATGGTCTTACACA
85839366 TAAACTTAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
42 49 0.96
43 2 0.04
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (41 bp):
CCCAGATATGGTCTTACACAAATCTCATACCGATGCCATAT
Found at i:85846237 original size:40 final size:40
Alignment explanation
Indices: 85846171--85846337 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
85846161 AAATTGAATG
* * *
85846171 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
85846210 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
85846250 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
85846290 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
85846330 ATATCCGG
1 ATATCCGG
85846338 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:85855585 original size:40 final size:40
Alignment explanation
Indices: 85855423--85855587 Score: 162
Period size: 39 Copynumber: 4.2 Consensus size: 40
85855413 AAATTGAATG
* * **
85855423 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * *
85855462 ATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTG-GT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
85855500 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
85855540 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
85855580 ATATCCGG
1 ATATCCGG
85855588 TTATATTCCG
Statistics
Matches: 102, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 17 0.17
39 44 0.43
40 39 0.38
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:85863453 original size:40 final size:40
Alignment explanation
Indices: 85863387--85863537 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
85863377 AAATTGAATG
* * *
85863387 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
85863426 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
85863466 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
85863506 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
85863538 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:85865759 original size:19 final size:19
Alignment explanation
Indices: 85865735--85865780 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
85865725 TACGAGACAT
85865735 GGGCGTGTCCCTTA-CACAC
1 GGGCGTGTCCC-TAGCACAC
85865754 GGGCGTGTCCCTAGCACAC
1 GGGCGTGTCCCTAGCACAC
*
85865773 GGGTGTGT
1 GGGCGTGT
85865781 GCTCTATATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 2 0.08
19 23 0.92
ACGTcount: A:0.13, C:0.30, G:0.35, T:0.22
Consensus pattern (19 bp):
GGGCGTGTCCCTAGCACAC
Found at i:85871119 original size:47 final size:46
Alignment explanation
Indices: 85871000--85871173 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
85870990 GGGATATTTG
*
85871000 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
85871047 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---CGA
* *
85871093 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCG-A
* *
85871140 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
85871174 TATGGGCGGG
Statistics
Matches: 110, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.04
45 32 0.29
46 34 0.31
47 34 0.31
48 2 0.02
49 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGA
Found at i:85876379 original size:40 final size:39
Alignment explanation
Indices: 85876334--85876541 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
85876324 CGGAATACAA
*
85876334 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
85876374 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85876414 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * ** * *
85876454 CCTGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
85876494 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85876534 CCGGATAT
1 CCGGATAT
85876542 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85876474 original size:80 final size:80
Alignment explanation
Indices: 85876334--85876541 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
85876324 CGGAATACAA
* * *
85876334 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
85876399 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * * *
85876414 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCTGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
85876478 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
85876494 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
85876542 CATTCAATTG
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:85883603 original size:40 final size:39
Alignment explanation
Indices: 85883558--85883764 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
85883548 CGGAATACAA
*
85883558 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
85883598 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85883638 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85883678 CCGGATGTAGTCACTAGCACAATTG-CTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
85883717 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85883757 CCGGATAT
1 CCGGATAT
85883765 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 34 0.24
40 109 0.76
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85883698 original size:80 final size:79
Alignment explanation
Indices: 85883558--85883764 Score: 245
Period size: 80 Copynumber: 2.6 Consensus size: 79
85883548 CGGAATACAA
* * *
85883558 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
85883623 CCTTCGGGTATTAGC
66 -CTTCGGGTATTAAC
* * * *
85883638 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
85883702 GCTTCGGGTCTTAAC
65 GCTTCGGGTATTAAC
** * ** * *
85883717 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
85883765 CATTCAATTG
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 51 0.47
80 56 0.52
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CTTCGGGTATTAAC
Found at i:85896802 original size:5 final size:5
Alignment explanation
Indices: 85896781--85896833 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
85896771 TGTTAAAATA
* *
85896781 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
85896829 TATAT
1 TATAT
85896834 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:85896812 original size:10 final size:9
Alignment explanation
Indices: 85896778--85896834 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
85896768 ATGTGTTAAA
85896778 ATATATATT
1 ATATATATT
*
85896787 AAAT-TATT
1 ATATATATT
85896795 AT-TATATT
1 ATATATATT
85896803 ATAGTATATT
1 ATA-TATATT
85896813 ATAT-TA-T
1 ATATATATT
85896820 ATATTATATT
1 ATA-TATATT
85896830 ATATA
1 ATATA
85896835 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:85896824 original size:12 final size:12
Alignment explanation
Indices: 85896779--85896834 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
85896769 TGTGTTAAAA
*
85896779 TATATATTAAAT
1 TATATATTATAT
85896791 TAT-TATTATATT
1 TATATATTATA-T
85896803 ATAGTATATTATAT
1 -TA-TATATTATAT
85896817 TATATATTATAT
1 TATATATTATAT
85896829 TATATA
1 TATATA
85896835 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:85898172 original size:18 final size:19
Alignment explanation
Indices: 85898151--85898189 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
85898141 ATATATAGAT
85898151 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
85898169 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
85898188 AT
1 AT
85898190 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:85898541 original size:39 final size:39
Alignment explanation
Indices: 85898431--85898565 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
85898421 GACCTCGAGT
* * * *
85898431 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
85898472 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
85898510 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
85898549 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
85898566 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:85898709 original size:18 final size:19
Alignment explanation
Indices: 85898688--85898728 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
85898678 AATGAAATGA
85898688 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
85898706 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
85898725 GAAA
1 GAAA
85898729 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:85901647 original size:25 final size:25
Alignment explanation
Indices: 85901603--85901652 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
85901593 CTAATATTAT
85901603 ATAAAAAAGAAGAAAAAGAAAAAAA
1 ATAAAAAAGAAGAAAAAGAAAAAAA
*
85901628 ATAATAAAAGAAG-AAGAGAAAAAAA
1 ATAA-AAAAGAAGAAAAAGAAAAAAA
85901653 GTATATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (25 bp):
ATAAAAAAGAAGAAAAAGAAAAAAA
Found at i:85902487 original size:43 final size:43
Alignment explanation
Indices: 85902403--85902488 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
85902393 TATGCTAGAA
* * * *
85902403 AAAAAATAATTTAAAAAGAGGAGAAGATAAGCTTGGTTTGTTG
1 AAAAAAGAATTTAAAAAGAGGAAAAGATAAGATTGGGTTGTTG
*
85902446 AAAAAAGAATTTAAAAAGGGGAAAAGATAA-ATATGGGTTGTTG
1 AAAAAAGAATTTAAAAAGAGGAAAAGATAAGAT-TGGGTTGTTG
85902489 GATTTACCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.49, C:0.01, G:0.24, T:0.26
Consensus pattern (43 bp):
AAAAAAGAATTTAAAAAGAGGAAAAGATAAGATTGGGTTGTTG
Found at i:85907161 original size:29 final size:28
Alignment explanation
Indices: 85907127--85907229 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
85907117 TACTCAATCA
*
85907127 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
85907156 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
85907185 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
85907214 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
85907230 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:85910857 original size:46 final size:47
Alignment explanation
Indices: 85910698--85910863 Score: 152
Period size: 46 Copynumber: 3.6 Consensus size: 47
85910688 CTCCATAAGC
* * * * *
85910698 GAACTCGGACTCAACTCAATGAGCTCGG-GT-GTTCGCATCT--GAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACTAGTT-ACATCTCACAGT
*
85910742 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACA--
1 GAACTCGGACTCAACTCAACGAGTTC-G--GACTAGTTACATCTCACAGT
* *
85910790 -AACTCGGACTCAACTCAACGAGTTCGGAC-ATTTGCATC-CACAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACTAGTTACATCTCAC-AGT
85910835 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
85910864 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 3 0.03
43 8 0.08
44 26 0.25
45 1 0.01
46 29 0.28
47 26 0.25
48 6 0.06
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACTAGTTACATCTCACAGT
Found at i:85910882 original size:46 final size:46
Alignment explanation
Indices: 85910698--85910875 Score: 129
Period size: 44 Copynumber: 3.9 Consensus size: 46
85910688 CTCCATAAGC
* * * * * *
85910698 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTC--GCATCTGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTCAGT
* *
85910742 GAACTCGGACTCAACTCAACGAGTTCAGATGC-CTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTCAGT
* * * *
85910789 AAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCA-C-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTCAGT
85910835 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
85910876 CTAGTGACAT
Statistics
Matches: 104, Mismatches: 16, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
43 1 0.01
44 34 0.33
45 3 0.03
46 28 0.27
47 28 0.27
48 6 0.06
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTCAGT
Found at i:85914462 original size:10 final size:10
Alignment explanation
Indices: 85914449--85914480 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
85914439 AAATTATATA
*
85914449 TCATTAACAT
1 TCATCAACAT
85914459 TCATCAACAT
1 TCATCAACAT
85914469 TCATCAACAT
1 TCATCAACAT
85914479 TC
1 TC
85914481 GATGTCCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (10 bp):
TCATCAACAT
Found at i:85916356 original size:93 final size:93
Alignment explanation
Indices: 85916197--85916365 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
85916187 CGCCCATAAG
* *
85916197 CGAACTCGGACTCAACTCAATGAGCTCGAGCATTCGCATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
85916262 ACGAGTTCGGACGCCTAGTTACATCTCA
66 ACGAGTTCGGACGCCTAGTTACATCTCA
* * *
85916290 CGAACTCGGACTCAACTCAACGAGTTCG-GACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCAGACTCAACTC
85916354 AACGAGTTCGGA
65 AACGAGTTCGGA
85916366 TGCTCAACCA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGACGCCTAGTTACATCTCA
Found at i:85916358 original size:46 final size:47
Alignment explanation
Indices: 85916190--85916365 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 47
85916180 TGTAACCCGC
* * * *
85916190 CCATAAGCGAACTCGGACTCAACTCAATGAGCTC-GAGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACCATTTGCAT
* * * * *
85916236 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGACGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA--CC-ATTTGCAT
*
85916286 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACCATTTGCAT
*
85916329 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85916366 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.54
47 30 0.28
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACCATTTGCAT
Found at i:85920421 original size:15 final size:17
Alignment explanation
Indices: 85920391--85920422 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
85920381 TCGATACTTG
85920391 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
85920408 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
85920423 AATTAAGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:85928515 original size:40 final size:41
Alignment explanation
Indices: 85928470--85928618 Score: 153
Period size: 40 Copynumber: 3.7 Consensus size: 41
85928460 ATAATCCACA
* * *
85928470 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGGTAACT
1 AGCACAAATTGCCTTCGGGTCTTAGCCCGGATATGATAACT
* * * *
85928510 TGCACAAATT-CCTTCGGGTCTTAGCCCAGATATAACAACT
1 AGCACAAATTGCCTTCGGGTCTTAGCCCGGATATGATAACT
* * * *
85928550 CGCACGAA-TGCCTTCAGGTCTTAGCCCGGATATGATCACT
1 AGCACAAATTGCCTTCGGGTCTTAGCCCGGATATGATAACT
* *
85928590 AGCATAAA-TGCCTTCGGGACTTAGCCCGG
1 AGCACAAATTGCCTTCGGGTCTTAGCCCGG
85928619 GTATCATTCA
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 83 0.94
41 4 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (41 bp):
AGCACAAATTGCCTTCGGGTCTTAGCCCGGATATGATAACT
Found at i:85936589 original size:40 final size:40
Alignment explanation
Indices: 85936552--85936732 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
85936542 CAAGCACAAT
* * *** * *
85936552 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
85936592 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
* * *
85936632 TGCCTTTGGGTCTTAGCCCAGATGTAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
* * **
85936672 TGCCTTCGGGTCTTAGCCCGGATATGATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATAT-AACAACTCGCACGAA
* *
85936712 TGCCTTCAGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
85936733 GTATCATTCA
Statistics
Matches: 121, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
40 119 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
Found at i:85940763 original size:15 final size:17
Alignment explanation
Indices: 85940733--85940764 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
85940723 TTGATACTTG
85940733 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
85940750 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
85940765 AATTACACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:85942467 original size:40 final size:40
Alignment explanation
Indices: 85942402--85942574 Score: 238
Period size: 40 Copynumber: 4.3 Consensus size: 40
85942392 CGGTTATTTG
** *
85942402 TGGCACTTAGTGTGCGACACAACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* * *
85942442 TGGCACTTAGCGTGCAATTCGACATAGTTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
*
85942482 TGGAACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* * * *
85942522 TGGCACTTAGTGTACGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
*
85942562 CGGCACTTAGTGT
1 TGGCACTTAGTGT
85942575 ATGAGACATT
Statistics
Matches: 117, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 117 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
Found at i:85944950 original size:42 final size:41
Alignment explanation
Indices: 85944891--85945012 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 41
85944881 TAGGGTTAGT
*
85944891 TGAGATTACGTGTAAGACCATATATGGGATATGGCATCGATA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCGATA
* *
85944933 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
85944976 TGAGATCCCATGTAAGACCATATCTAGGATATGGCAT
1 TGAGAT-TCGTGTAAGACCATATCTGGGATATGGCAT
85945013 TGGTATGGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 32 0.46
43 37 0.54
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:85946584 original size:89 final size:89
Alignment explanation
Indices: 85946433--85946612 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
85946423 TGTTTGAGTT
* * *
85946433 TAAGTTTGGTAATGCCTCATACCCTGTTTCGACATCGAATATGAGTAAAGGGTGTTACACTAGAT
1 TAAGTTCGGTAATGCCTCATACCCTGTTTCAACATCGAATACGAGTAAAGGGTGTTACACTAGAT
85946498 ATTTCTAGCATAATTTGGCTAAGG
66 ATTTCTAGCATAATTTGGCTAAGG
*
85946522 TAAGTTCGGTAATGCCTCGTACCCTGTTTCAACATCGAATACGAGTAAAGGGTGTTACACTAGAT
1 TAAGTTCGGTAATGCCTCATACCCTGTTTCAACATCGAATACGAGTAAAGGGTGTTACACTAGAT
85946587 ATTTCTAGCATAATTTGGCTAAGG
66 ATTTCTAGCATAATTTGGCTAAGG
85946611 TA
1 TA
85946613 TCTTCACCAA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (89 bp):
TAAGTTCGGTAATGCCTCATACCCTGTTTCAACATCGAATACGAGTAAAGGGTGTTACACTAGAT
ATTTCTAGCATAATTTGGCTAAGG
Found at i:85953382 original size:27 final size:28
Alignment explanation
Indices: 85953325--85953394 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
85953315 AAAATTGTAC
**
85953325 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
85953353 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
85953380 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85953395 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:85960568 original size:27 final size:28
Alignment explanation
Indices: 85960511--85960580 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
85960501 AAAATTGTAC
**
85960511 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
85960539 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
85960566 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85960581 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:85963097 original size:20 final size:19
Alignment explanation
Indices: 85963053--85963098 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
85963043 CATCCAAACA
85963053 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
*
85963072 CTAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCA-TTT
85963092 CCAGAAA
1 CCAGAAA
85963099 TCATTTTCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:85963101 original size:14 final size:14
Alignment explanation
Indices: 85963082--85963119 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
85963072 CTAGAAAAGT
85963082 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
85963096 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
85963110 AAAACATTTT
1 AAATCATTTT
85963120 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:85966810 original size:27 final size:27
Alignment explanation
Indices: 85966756--85966818 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
85966746 TGTTAAGGAG
*
85966756 GAATAGCCTTTGTGTCAAAATCTAAAA
1 GAATAGCCTTTGTGACAAAATCTAAAA
* * * *
85966783 GAGTAGCCTTTGTGACGAATTCTGAAA
1 GAATAGCCTTTGTGACAAAATCTAAAA
85966810 GAATAGCCT
1 GAATAGCCT
85966819 CTATTGCAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (27 bp):
GAATAGCCTTTGTGACAAAATCTAAAA
Found at i:85967056 original size:88 final size:88
Alignment explanation
Indices: 85966907--85967076 Score: 286
Period size: 88 Copynumber: 1.9 Consensus size: 88
85966897 CAATGAAGAA
* *
85966907 CTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATATATGCTGAATAAAGATGTGAAC
1 CTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATACATGCTAAATAAAGATGTGAAC
*
85966972 TTGGTATGTTTGAAGGATGTGAG
66 TTGGTATGTTCGAAGGATGTGAG
* * *
85966995 CTTTGAAGGGATATAGAGAATTAATGGGTTAATATTGAAAATGCATGCTAAATAAGGATGTGAAC
1 CTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATACATGCTAAATAAAGATGTGAAC
85967060 TTGGTATGTTCGAAGGA
66 TTGGTATGTTCGAAGGA
85967077 AATACCCGTC
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.36, C:0.05, G:0.28, T:0.31
Consensus pattern (88 bp):
CTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATACATGCTAAATAAAGATGTGAAC
TTGGTATGTTCGAAGGATGTGAG
Found at i:85969202 original size:40 final size:40
Alignment explanation
Indices: 85969044--85969221 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
85969034 CGTATAGTAA
* * * *
85969044 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACGA-ATT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA-T
* * *
85969084 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
85969124 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
* *
85969164 CCGGGCCAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTA-CTATAT
* *
85969204 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCAAAGG
85969222 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 15 0.12
40 108 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
Found at i:85977099 original size:40 final size:40
Alignment explanation
Indices: 85977050--85977221 Score: 233
Period size: 40 Copynumber: 4.3 Consensus size: 40
85977040 TAACCGGGGT
* *
85977050 TAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGC
*
85977090 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
*
85977130 TAAGTCCCGAAGGTATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* * *
85977170 CAAGTCCCGAATGCATTTGAGCGAG-TAGCTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGC
*
85977209 TAAATCCCGAAGG
1 TAAGTCCCGAAGG
85977222 TACTTGGTTT
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.13
40 103 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
Found at i:85982056 original size:2 final size:2
Alignment explanation
Indices: 85982051--85982087 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
85982041 TATATATATA
* *
85982051 TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG TC TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
85982088 ATTTGGTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.05, G:0.43, T:0.51
Consensus pattern (2 bp):
TG
Found at i:85983681 original size:29 final size:29
Alignment explanation
Indices: 85983653--85983754 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
85983643 CCTCCGAGCT
** * * *
85983653 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85983682 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85983711 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85983740 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
85983755 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:85991532 original size:29 final size:29
Alignment explanation
Indices: 85991504--85991605 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
85991494 CCTCCGAGCT
** * * *
85991504 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85991533 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85991562 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85991591 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
85991606 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:85999379 original size:29 final size:29
Alignment explanation
Indices: 85999351--85999452 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
85999341 CCTCCGAGCT
** * * *
85999351 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
85999380 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85999409 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
85999438 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
85999453 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:86004496 original size:20 final size:21
Alignment explanation
Indices: 86004463--86004501 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
86004453 CTAAAAATTA
86004463 TTTAAAAATATTA-TAAAACT
1 TTTAAAAATATTATTAAAACT
* *
86004483 TTTAAAACTTTTATTAAAA
1 TTTAAAAATATTATTAAAA
86004502 AATCAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAAATATTATTAAAACT
Found at i:86004546 original size:53 final size:53
Alignment explanation
Indices: 86004455--86004556 Score: 118
Period size: 53 Copynumber: 1.9 Consensus size: 53
86004445 GAAAAATTCT
* *
86004455 AAAAATTATTTAAAAATATTATAAAACTTTTAAAACTTTTATTAAAAAATCAA
1 AAAAATTATTTAAAAATATTATAAAAATTTTAAAACTTTTATAAAAAAATCAA
* ** *
86004508 AAAAATTATTTAAAGAA-ATTTTAAAAAATTTT-GCACTTTTCTAAAAAAA
1 AAAAATTATTTAAA-AATATTAT-AAAAATTTTAAAACTTTTATAAAAAAA
86004557 AAAATTTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
53 31 0.76
54 10 0.24
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (53 bp):
AAAAATTATTTAAAAATATTATAAAAATTTTAAAACTTTTATAAAAAAATCAA
Found at i:86004607 original size:24 final size:23
Alignment explanation
Indices: 86004578--86004640 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 23
86004568 TTTTATACAA
86004578 AAATAT-AAAAATTTATATTGAAAG
1 AAATATAAAAAATTTAT-TT-AAAG
86004602 AAATATAAAAAATTTATTTAAAG
1 AAATATAAAAAATTTATTTAAAG
*
86004625 AAATTTTAAAAAATTT
1 AAA-TATAAAAAATTT
86004641 TGCACTTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
23 7 0.19
24 19 0.53
25 10 0.28
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
AAATATAAAAAATTTATTTAAAG
Found at i:86004691 original size:18 final size:18
Alignment explanation
Indices: 86004668--86004702 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86004658 TATAAAAAGA
* *
86004668 TTTATTATTTTTTGAATT
1 TTTATTAATTTTAGAATT
86004686 TTTATTAATTTTAGAAT
1 TTTATTAATTTTAGAAT
86004703 ATCATATATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (18 bp):
TTTATTAATTTTAGAATT
Found at i:86006915 original size:17 final size:16
Alignment explanation
Indices: 86006895--86006934 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
86006885 TTATAAACAC
86006895 ATAAATATATTAAAAA
1 ATAAATATATTAAAAA
* *
86006911 TATAAAAATATTTAAAA
1 -ATAAATATATTAAAAA
86006928 ATAAATA
1 ATAAATA
86006935 AACTGATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAAATATATTAAAAA
Found at i:86006927 original size:18 final size:18
Alignment explanation
Indices: 86006876--86006930 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
86006866 TATAAAATTT
*
86006876 TAAAAATATTTATAAACACA
1 TAAAAATATTTA-AAA-ATA
*
86006896 TAAATATA-TTAAAAATA
1 TAAAAATATTTAAAAATA
86006913 TAAAAATATTTAAAAATA
1 TAAAAATATTTAAAAATA
86006931 AATAAACTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 9 0.29
18 12 0.39
19 3 0.10
20 7 0.23
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAATATTTAAAAATA
Found at i:86006928 original size:10 final size:10
Alignment explanation
Indices: 86006869--86006930 Score: 51
Period size: 10 Copynumber: 6.6 Consensus size: 10
86006859 TCATTATTAT
86006869 AAAAT-TTTA
1 AAAATATTTA
86006878 AAAATATTTA
1 AAAATATTTA
* * **
86006888 TAAACACATA
1 AAAATATTTA
*
86006898 AATATA-TTA
1 AAAATATTTA
86006907 AAAATA--TA
1 AAAATATTTA
86006915 AAAATATTTA
1 AAAATATTTA
86006925 AAAATA
1 AAAATA
86006931 AATAAACTGA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
8 8 0.20
9 12 0.29
10 21 0.51
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATATTTA
Found at i:86019514 original size:28 final size:28
Alignment explanation
Indices: 86019449--86019549 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
86019439 ATAGTGAATC
*
86019449 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
86019478 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86019506 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
86019536 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86019550 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86027468 original size:28 final size:28
Alignment explanation
Indices: 86027403--86027503 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
86027393 ATAGTGAATC
*
86027403 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
86027432 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86027460 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
86027490 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86027504 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86033492 original size:40 final size:40
Alignment explanation
Indices: 86033437--86033513 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
86033427 TATGACGTTC
* *
86033437 ATAGTGTGGCATACATAAATCCTGAGTAGATAGCAGATTT
1 ATAGTATGGCATACATAAATCCTGAATAGATAGCAGATTT
*
86033477 ATAGTATGTCATACATAAATCCTGAATAGATAGCAGA
1 ATAGTATGGCATACATAAATCCTGAATAGATAGCAGA
86033514 CTATGTATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (40 bp):
ATAGTATGGCATACATAAATCCTGAATAGATAGCAGATTT
Found at i:86034429 original size:26 final size:26
Alignment explanation
Indices: 86034376--86034435 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
86034366 ATATTTTTTT
*
86034376 AAAATTTTACCATAGGCAAAATCATC
1 AAAATTTTACCAAAGGCAAAATCATC
* * * *
86034402 AAAATTTTATCAAAGGTAAATTCGTC
1 AAAATTTTACCAAAGGCAAAATCATC
86034428 AAAATTTT
1 AAAATTTT
86034436 GCTGGGGGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.33
Consensus pattern (26 bp):
AAAATTTTACCAAAGGCAAAATCATC
Found at i:86039736 original size:18 final size:17
Alignment explanation
Indices: 86039713--86039747 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
86039703 GATGCTTTGA
86039713 AAATATTTATATATTTTT
1 AAATATTT-TATATTTTT
*
86039731 AAATATTTTTTATTTTT
1 AAATATTTTATATTTTT
86039748 CATATTTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
AAATATTTTATATTTTT
Found at i:86040126 original size:22 final size:22
Alignment explanation
Indices: 86040101--86040144 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
86040091 ACATAAAAGA
*
86040101 AATCATAATTTTGCTGAATAAT
1 AATCATAATTTTGCTAAATAAT
86040123 AATCATAATTTTGCTAAATAAT
1 AATCATAATTTTGCTAAATAAT
86040145 TTTAATGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (22 bp):
AATCATAATTTTGCTAAATAAT
Found at i:86043707 original size:27 final size:28
Alignment explanation
Indices: 86043651--86043720 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
86043641 AAATTTGTAC
86043651 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
86043679 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
86043706 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86043721 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:86043731 original size:27 final size:27
Alignment explanation
Indices: 86043651--86043732 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
86043641 AAATTTGTAC
* *
86043651 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
86043679 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
86043706 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
86043733 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Done.