Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 276 of 438
Found at i:86047319 original size:48 final size:48
Alignment explanation
Indices: 86047267--86047359 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
86047257 GTCTCATTAT
* * *
86047267 GATGCCAACGCCATGTCCCAGACGTGGTCTTACATGGGATCACATAAC
1 GATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACATAAC
** *
86047315 GATGCCAAAGTGATGTCCTAAACATGGTCTTACATGGGATCACAT
1 GATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACAT
86047360 GTCACTACCG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (48 bp):
GATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACATAAC
Found at i:86051330 original size:27 final size:27
Alignment explanation
Indices: 86051234--86051331 Score: 74
Period size: 27 Copynumber: 3.6 Consensus size: 27
86051224 TCAGTTTACC
* * * *
86051234 AAATTACCGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
* *
86051261 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTATA
* ***
86051288 GAATTA-TCGTTTTACCCTCGATTTATA
1 AAATTACT-GAAATACCCTCGATTTATA
86051315 AAATTACTGAAATACCC
1 AAATTACTGAAATACCC
86051332 CTGTAGGGTA
Statistics
Matches: 52, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
26 3 0.06
27 48 0.92
28 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTATA
Found at i:86051372 original size:15 final size:15
Alignment explanation
Indices: 86051352--86051380 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
86051342 GAATTACTGA
86051352 AATACCCTTGTAGGT
1 AATACCCTTGTAGGT
86051367 AATACCCTTGTAGG
1 AATACCCTTGTAGG
86051381 GTAGAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (15 bp):
AATACCCTTGTAGGT
Found at i:86051391 original size:19 final size:17
Alignment explanation
Indices: 86051349--86051391 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 17
86051339 GTAGAATTAC
86051349 TGAAATACCCTTGTAGG
1 TGAAATACCCTTGTAGG
86051366 T--AATACCCTTGTAGGG
1 TGAAATACCCTTGTA-GG
86051382 TAGAAATACC
1 T-GAAATACC
86051392 GAAATACCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 12 0.55
16 3 0.14
17 1 0.05
19 6 0.27
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (17 bp):
TGAAATACCCTTGTAGG
Found at i:86051504 original size:80 final size:81
Alignment explanation
Indices: 86051367--86051628 Score: 413
Period size: 80 Copynumber: 3.3 Consensus size: 81
86051357 CCTTGTAGGT
* *
86051367 AATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACTAAAATA-CCCTAT
1 AATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTAT
*
86051431 AGGGTAGAATTACCGA
66 AGGGTAGAATTACTGA
*
86051447 AATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTGT
1 AATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTAT
86051512 AGGGTAGAA-TACTGA
66 AGGGTAGAATTACTGA
* * *
86051527 AATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTAT
1 AATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTAT
*
86051592 AGGGTAGAATTATTGA
66 AGGGTAGAATTACTGA
* *
86051608 GATACCCTTGTGGGGTA-AAAT
1 AATACCCTTGTAGGGTAGAAAT
86051629 TACCATTTTG
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
80 134 0.80
81 34 0.20
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
AATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTAT
AGGGTAGAATTACTGA
Found at i:86051553 original size:107 final size:107
Alignment explanation
Indices: 86051367--86051631 Score: 397
Period size: 107 Copynumber: 2.5 Consensus size: 107
86051357 CCTTGTAGGT
* * * *
86051367 AATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCTATA
1 AATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTATA
*
86051432 GGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGA
66 GGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGA
* *
86051474 AATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAA-TACTGAAATACCCTTGT
1 AATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCC-TAT
86051538 AGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGA
65 AGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGA
* * * * * *
86051581 AATACCCCTATAGGGTAGAATTATTGAGATACCCTTGTGGGGTAAAATTAC
1 AATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
86051632 CATTTTGCCC
Statistics
Matches: 143, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
106 12 0.08
107 128 0.90
108 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (107 bp):
AATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTATA
GGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGA
Found at i:86051612 original size:27 final size:27
Alignment explanation
Indices: 86051367--86051632 Score: 338
Period size: 27 Copynumber: 9.9 Consensus size: 27
86051357 CCTTGTAGGT
* *
86051367 AATACCCTTGTAGGGTAGAAATACCGA
1 AATACCCTTATAGGGTAGAATTACCGA
* **
86051394 AATACCCCTATAGGGTAGAATTACTAA
1 AATACCCTTATAGGGTAGAATTACCGA
86051421 AATACCC-TATAGGGTAGAATTACCGA
1 AATACCCTTATAGGGTAGAATTACCGA
* *
86051447 AATACCCTTGTAGGGTAGAAATACCGA
1 AATACCCTTATAGGGTAGAATTACCGA
*
86051474 AATACCCTTATAGGGTAGAATTACTGA
1 AATACCCTTATAGGGTAGAATTACCGA
* * *
86051501 AATACCCCTGTAGGGTAGAA-TACTGA
1 AATACCCTTATAGGGTAGAATTACCGA
*
86051527 AATACCCTTGTAGGGTAGAATTACCGA
1 AATACCCTTATAGGGTAGAATTACCGA
*
86051554 AATACCCTTATAGGGTAGAAATACCGA
1 AATACCCTTATAGGGTAGAATTACCGA
* **
86051581 AATACCCCTATAGGGTAGAATTATTGA
1 AATACCCTTATAGGGTAGAATTACCGA
* * * *
86051608 GATACCCTTGTGGGGTAAAATTACC
1 AATACCCTTATAGGGTAGAATTACC
86051633 ATTTTGCCCC
Statistics
Matches: 208, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 49 0.24
27 159 0.76
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AATACCCTTATAGGGTAGAATTACCGA
Found at i:86052095 original size:22 final size:22
Alignment explanation
Indices: 86052025--86052087 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
86052015 TTATTCTGAT
* *
86052025 TATGGCTTTGCGCCAACCTACA
1 TATGGCTCTGTGCCAACCTACA
86052047 TATGGCTCTGTGCCAACCTACA
1 TATGGCTCTGTGCCAACCTACA
*
86052069 TATGGCTCCGTGCCAACCT
1 TATGGCTCTGTGCCAACCT
86052088 GATTATGGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTACA
Found at i:86052345 original size:27 final size:26
Alignment explanation
Indices: 86052306--86052372 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 26
86052296 CTATGCAACA
* *
86052306 AATATCTGTTCTGGTGGCTCTCCCAT
1 AATATCTGTTCTGGTGACTCTACCAT
*
86052332 AATATCTGTATCTGGTGACTCTATCAT
1 AATATCTGT-TCTGGTGACTCTACCAT
86052359 AATATCTGTTCTGG
1 AATATCTGTTCTGG
86052373 CAGCCATGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 14 0.38
27 23 0.62
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (26 bp):
AATATCTGTTCTGGTGACTCTACCAT
Found at i:86052499 original size:6 final size:6
Alignment explanation
Indices: 86052490--86052552 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
86052480 TTGCATTCAC
* * *
86052490 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTT ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
86052539 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
86052553 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 2 0.04
6 39 0.85
7 4 0.09
8 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:86054013 original size:53 final size:54
Alignment explanation
Indices: 86053945--86054150 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 54
86053935 TTCCTTTTTA
* * * *
86053945 AACTT-CCATTGCCATGTCTTGACATGCTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
86053997 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
86054051 TAGTTTATCAATGCCATGTCTTGACATGGTCTTTCATGATTTCCTTGCCTGT-TAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCT-TATAG
* **
86054106 AACTTACCAATGCCATGCCTTGGCATGGTCTTAGTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
86054151 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 31, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
52 4 0.03
53 40 0.34
54 36 0.30
55 38 0.32
56 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:86054099 original size:55 final size:53
Alignment explanation
Indices: 86053954--86054150 Score: 171
Period size: 55 Copynumber: 3.7 Consensus size: 53
86053944 AAACTTCCAT
* * *
86053954 TGCCATGTCTTGACATGCTCTTACGTGGTATCCTTGCCTTATGAACTCACCAT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
* * * * ** * *
86054007 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAA
* * * * *
86054062 TGCCATGTCTTGACATGGTCTTTCATGATTTCCTTGCCTGT-TAAAACTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCT-TAT-GAACTCACCAA
* * **
86054116 TGCCATGCCTTGGCATGGTCTTAGTTGGTATCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
86054151 AAACCCTAAT
Statistics
Matches: 111, Mismatches: 30, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 36 0.32
54 36 0.32
55 38 0.34
56 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
Found at i:86060337 original size:174 final size:174
Alignment explanation
Indices: 86060038--86060552 Score: 899
Period size: 174 Copynumber: 3.0 Consensus size: 174
86060028 ACTATCAAAA
* * ** *
86060038 TATGACATATATAGCTAGACTCTTACTCATACTGAATATTTTTAGAATTGACTAAACTCTTGCTC
1 TATGGCATGTATAGCTAGACTCTTACTCATACTGAATATTTCGAGAACTGACTAAACTCTTGCTC
*
86060103 TGATACTAATAAATGTAACACCCCTTACCGGAGGCTGTCGTCGGAGTCGAGCACGAGGCATTACC
66 TGATACTAATAAATGTAACACCCCTTACCTGAGGCTGTCGTCGGAGTCGAGCACGAGGCATTACC
86060168 AGACTTATCTTATCTGTTCGGGACATAAAAAGAAATTATATAAG
131 AGACTTATCTTATCTGTTCGGGACATAAAAAGAAATTATATAAG
86060212 TATGGCATGTATAGCTAGACTCTTACTCATACTGAATATTTCGAGAACTGACTAAACTCTTGCTC
1 TATGGCATGTATAGCTAGACTCTTACTCATACTGAATATTTCGAGAACTGACTAAACTCTTGCTC
86060277 TGATACTAATAAATGTAACACCCCTTACCTGAGGCTGTCGTCGGAGTCGAGCACGAGGCATTACC
66 TGATACTAATAAATGTAACACCCCTTACCTGAGGCTGTCGTCGGAGTCGAGCACGAGGCATTACC
86060342 AGACTTATCTTATCTGTTCGGGACATAAAAAGAAATTATATAAG
131 AGACTTATCTTATCTGTTCGGGACATAAAAAGAAATTATATAAG
86060386 TATGGCATGTATAGCTAGACTCTTACTCATACTGAATATTTCGAGAACTGACTAAACTCTTGCTC
1 TATGGCATGTATAGCTAGACTCTTACTCATACTGAATATTTCGAGAACTGACTAAACTCTTGCTC
* ** * *
86060451 TGATACTAATAAATGTAACACCCCTTACCCT-AGACCATCGCCGGAGTCGAGCACGAGGCGTTAC
66 TGATACTAATAAATGTAACACCCCTTA-CCTGAGGCTGTCGTCGGAGTCGAGCACGAGGCATTAC
*
86060515 CAGACTTATCTTACCTGTTCGGGACATAAAAA-AAATTA
130 CAGACTTATCTTATCTGTTCGGGACATAAAAAGAAATTA
86060553 CTTTTTAAAA
Statistics
Matches: 328, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
173 6 0.02
174 319 0.97
175 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (174 bp):
TATGGCATGTATAGCTAGACTCTTACTCATACTGAATATTTCGAGAACTGACTAAACTCTTGCTC
TGATACTAATAAATGTAACACCCCTTACCTGAGGCTGTCGTCGGAGTCGAGCACGAGGCATTACC
AGACTTATCTTATCTGTTCGGGACATAAAAAGAAATTATATAAG
Found at i:86066387 original size:29 final size:29
Alignment explanation
Indices: 86066325--86066427 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
86066315 GTGACGAGAT
* * *
86066325 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
86066354 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
86066383 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
86066412 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
86066428 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:86070763 original size:46 final size:45
Alignment explanation
Indices: 86070670--86070755 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
86070660 TACATTTCAC
* * *
86070670 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCCGA-ATGCGCAACCATAAGT
* *
86070716 GAACTCGGACTCAACTCAACGAGTTCCG-ATGCTCAACCAT
1 GAACTCAGACTCAACTCAACGAGTTCCGAATGCGCAACCAT
86070756 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (45 bp):
GAACTCAGACTCAACTCAACGAGTTCCGAATGCGCAACCATAAGT
Found at i:86071202 original size:30 final size:30
Alignment explanation
Indices: 86071168--86071227 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86071158 ATTTAATACG
86071168 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
86071198 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
86071228 GGCTCGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:86078224 original size:92 final size:92
Alignment explanation
Indices: 86078113--86078282 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
86078103 CGCCCTAAGT
* *
86078113 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86078178 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
86078205 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86078270 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86078283 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:86078279 original size:46 final size:46
Alignment explanation
Indices: 86078108--86078279 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
86078098 TAACCCGCCC
* * *
86078108 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
86078154 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
86078200 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
86078246 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86078280 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:86078298 original size:46 final size:46
Alignment explanation
Indices: 86078110--86078298 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
86078100 ACCCGCCCTA
* ** * *
86078110 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
86078155 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
86078203 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
86078248 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
86078294 AGTGA
1 AGTGA
86078299 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:86078734 original size:30 final size:30
Alignment explanation
Indices: 86078700--86078759 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86078690 ATTTAATAAG
86078700 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
86078730 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
86078760 GGCTCGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:86079246 original size:45 final size:45
Alignment explanation
Indices: 86079182--86079269 Score: 176
Period size: 45 Copynumber: 2.0 Consensus size: 45
86079172 GAAGAAGATG
86079182 ACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAAGA
1 ACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAAGA
86079227 ACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAA
1 ACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAA
86079270 CTAAATGACC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.50
Consensus pattern (45 bp):
ACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAAGA
Found at i:86089576 original size:40 final size:40
Alignment explanation
Indices: 86089522--86089639 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
86089512 CGGATGTAAC
* *
86089522 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
86089562 AACCCGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
86089602 AACCCGCACGAATGCTTTCAGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
86089640 TTTTTTTTCA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:86093138 original size:45 final size:47
Alignment explanation
Indices: 86093082--86093193 Score: 131
Period size: 47 Copynumber: 2.4 Consensus size: 47
86093072 TAATATGAGA
* * * *
86093082 CATGTCAGGGACAT-GCATC-AGCTAT-GAGATGTGTCAGTGTAAGAC
1 CATGTCAGGGACATAGCATCTA-CTATAGACATGAGCCAGTGTAAAAC
* * *
86093127 CATGTCTGGGACATGGCATCTACTTTAGACATGAGCCAGTGTAAAAC
1 CATGTCAGGGACATAGCATCTACTATAGACATGAGCCAGTGTAAAAC
86093174 CATGTCAGGGACATAGCATC
1 CATGTCAGGGACATAGCATC
86093194 GACATCATAC
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
45 13 0.23
46 8 0.14
47 35 0.62
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (47 bp):
CATGTCAGGGACATAGCATCTACTATAGACATGAGCCAGTGTAAAAC
Found at i:86094307 original size:21 final size:19
Alignment explanation
Indices: 86094273--86094332 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 19
86094263 TTTTAGTGAT
86094273 CACACGGGAATGTTGCCCTTC
1 CACACGGG--TGTTGCCCTTC
*
86094294 CACACAGGCGTGTTGCCTTTC
1 CACAC-GG-GTGTTGCCCTTC
86094315 CACACGGGTGTGTGCCCT
1 CACACGGGTGT-TGCCCT
86094333 GTTTCAAGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
19 4 0.12
20 7 0.21
21 20 0.59
22 2 0.06
23 1 0.03
ACGTcount: A:0.15, C:0.33, G:0.27, T:0.25
Consensus pattern (19 bp):
CACACGGGTGTTGCCCTTC
Found at i:86095317 original size:48 final size:48
Alignment explanation
Indices: 86095242--86095333 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
86095232 CACAAGGTAG
* * *
86095242 GATGCCAATGTCATATCCCAGATATGGTCTTACATGGGACCACATAAT
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGACCACATAAT
* *
86095290 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGACCACA
86095334 CATATCGAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGACCACATAAT
Found at i:86100187 original size:7 final size:7
Alignment explanation
Indices: 86100175--86100200 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
86100165 CCTTCATATT
86100175 TTCTTTA
1 TTCTTTA
86100182 TTCTTTA
1 TTCTTTA
86100189 TTCTTTA
1 TTCTTTA
86100196 TTCTT
1 TTCTT
86100201 CCTATCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCTTTA
Found at i:86102364 original size:25 final size:25
Alignment explanation
Indices: 86102306--86102365 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
86102296 TAAATAATTT
86102306 TATAAATTTATTTTTAATTAACTAA
1 TATAAATTTATTTTTAATTAACTAA
*
86102331 TATATATTTATTATTTAATATAAC-AA
1 TATAAATTTATT-TTTAAT-TAACTAA
86102357 -ATAAATTTA
1 TATAAATTTA
86102366 AATTATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 19 0.61
26 8 0.26
27 4 0.13
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (25 bp):
TATAAATTTATTTTTAATTAACTAA
Found at i:86106986 original size:71 final size:71
Alignment explanation
Indices: 86106902--86107065 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
86106892 CGATTTGTCT
86106902 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
86106967 CTTTCA
66 CTTTCA
* *
86106973 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
86107038 CTTTCA
66 CTTTCA
86107044 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86107066 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:86107103 original size:71 final size:70
Alignment explanation
Indices: 86106902--86107099 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
86106892 CGATTTGTCT
* * * * *
86106902 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86106967 CTTTCA
65 CTTTCA
* * * *
86106973 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86107038 CTTTCA
65 CTTTCA
* *
86107044 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
86107100 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86114490 original size:66 final size:68
Alignment explanation
Indices: 86114412--86114598 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
86114402 TAGTACCACT
*
86114412 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
86114474 CACG
65 CACG
86114478 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
86114543 ATCACG
63 ATCACG
86114549 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
86114599 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:86114523 original size:71 final size:71
Alignment explanation
Indices: 86114435--86114598 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
86114425 CGATTTGTCT
86114435 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86114500 CTTTCA
66 CTTTCA
86114506 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86114571 CTTTCA
66 CTTTCA
86114577 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86114599 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:86114636 original size:71 final size:70
Alignment explanation
Indices: 86114435--86114632 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
86114425 CGATTTGTCT
* * * *
86114435 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86114500 CTTTCA
65 CTTTCA
* * * *
86114506 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86114571 CTTTCA
65 CTTTCA
* *
86114577 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
86114633 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86115945 original size:9 final size:9
Alignment explanation
Indices: 86115931--86115955 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
86115921 CACTACTTCA
86115931 GCTTATCAT
1 GCTTATCAT
86115940 GCTTATCAT
1 GCTTATCAT
86115949 GCTTATC
1 GCTTATC
86115956 TCATTACATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (9 bp):
GCTTATCAT
Found at i:86116132 original size:24 final size:24
Alignment explanation
Indices: 86116104--86116152 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
86116094 AAACAAATGA
86116104 ATTTGTTTAATCATTTCGAACATC
1 ATTTGTTTAATCATTTCGAACATC
86116128 ATTTGTTTAATCATTTCGAACATC
1 ATTTGTTTAATCATTTCGAACATC
86116152 A
1 A
86116153 AAGCCTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (24 bp):
ATTTGTTTAATCATTTCGAACATC
Found at i:86126494 original size:71 final size:71
Alignment explanation
Indices: 86126410--86126573 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
86126400 CGATTTGTCT
86126410 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
86126475 CTTTCA
66 CTTTCA
* *
86126481 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
86126546 CTTTCA
66 CTTTCA
86126552 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86126574 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:86126611 original size:71 final size:70
Alignment explanation
Indices: 86126410--86126607 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
86126400 CGATTTGTCT
* * * * *
86126410 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86126475 CTTTCA
65 CTTTCA
* * * *
86126481 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86126546 CTTTCA
65 CTTTCA
* *
86126552 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
86126608 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86134030 original size:70 final size:71
Alignment explanation
Indices: 86133947--86134109 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
86133937 CGATTTGTCT
86133947 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86134011 CTTTCA
66 CTTTCA
*
86134017 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86134082 CTTTCA
66 CTTTCA
86134088 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86134110 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:86134147 original size:71 final size:70
Alignment explanation
Indices: 86133947--86134143 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
86133937 CGATTTGTCT
* * * *
86133947 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86134011 CTTTCA
65 CTTTCA
* * * *
86134017 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86134082 CTTTCA
65 CTTTCA
* *
86134088 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
86134144 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86136375 original size:28 final size:28
Alignment explanation
Indices: 86136328--86136398 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
86136318 GAGCCCTATT
*
86136328 CAATATCAGT-ACAGTCTGGGCCTTAGCC
1 CAATA-CAGTAACAGTCTGGGCCTAAGCC
* *
86136356 CTATACAGTAACAGTGTGGGCCTAAGCC
1 CAATACAGTAACAGTCTGGGCCTAAGCC
*
86136384 CAATACAGTATCAGT
1 CAATACAGTAACAGT
86136399 ACAGTGTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 4 0.11
28 33 0.89
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (28 bp):
CAATACAGTAACAGTCTGGGCCTAAGCC
Found at i:86136405 original size:33 final size:33
Alignment explanation
Indices: 86136300--86136403 Score: 110
Period size: 33 Copynumber: 3.3 Consensus size: 33
86136290 ACAGTGCATG
* * *
86136300 CAGTGACAGTCTGGGCCTGAGCCCTATTCAATAT
1 CAGT-ACAGTCTGGGCCTAAGCCCTATACAGTAT
*
86136334 CAGTACAGTCTGGGCCTTAGCCCTATACAG--T
1 CAGTACAGTCTGGGCCTAAGCCCTATACAGTAT
* *
86136365 -A--ACAGTGTGGGCCTAAGCCCAATACAGTAT
1 CAGTACAGTCTGGGCCTAAGCCCTATACAGTAT
86136395 CAGTACAGT
1 CAGTACAGT
86136404 GTAATGCAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
28 23 0.39
30 2 0.03
31 2 0.03
33 28 0.47
34 4 0.07
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTAAGCCCTATACAGTAT
Found at i:86136572 original size:27 final size:27
Alignment explanation
Indices: 86136542--86136618 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
86136532 AATGCAGCAT
*
86136542 AGCCGCCAGAAACAGTAAATGTGGCAA
1 AGCCACCAGAAACAGTAAATGTGGCAA
* * * *
86136569 AGCCACCAGTATCAGTAATTGTGGCAT
1 AGCCACCAGAAACAGTAAATGTGGCAA
* * * *
86136596 AGCCATCAGTAACGGTGAATGTG
1 AGCCACCAGAAACAGTAAATGTG
86136619 ACATAGCTAC
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (27 bp):
AGCCACCAGAAACAGTAAATGTGGCAA
Found at i:86142394 original size:50 final size:48
Alignment explanation
Indices: 86142322--86142452 Score: 137
Period size: 50 Copynumber: 2.8 Consensus size: 48
86142312 CATCATCGAG
* * * *
86142322 GCCGACGCCATGTCCCAAACATGATCTTACACTAGCTTTCACATATTCGT-
1 GCCGATGCCATGTCCTAGACATG-TCTTACACTAGC-TACACATATT-GTA
* *
86142372 GCCGATGCCAAGTCCTAGACATGGTCTTACACT-G--ACACATCTTGTA
1 GCCGATGCCATGTCCTAGACAT-GTCTTACACTAGCTACACATATTGTA
86142418 GCCGATGCC-TGTCCTAGACATGTCTTACACTAGCT
1 GCCGATGCCATGTCCTAGACATGTCTTACACTAGCT
86142453 CTCGTCTCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
44 10 0.14
45 14 0.20
46 16 0.23
49 1 0.01
50 27 0.39
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACATGTCTTACACTAGCTACACATATTGTA
Found at i:86147990 original size:40 final size:40
Alignment explanation
Indices: 86147965--86148121 Score: 260
Period size: 40 Copynumber: 3.9 Consensus size: 40
86147955 CCCGGTTATA
* * * *
86147965 GTAATTCGCGCAAATGCCTTCGGGACTTAACCCAGATTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
*
86148005 GTAACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
*
86148045 GTAACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
86148085 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
86148122 ATCATTTGAA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
Found at i:86152555 original size:12 final size:12
Alignment explanation
Indices: 86152538--86152569 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
86152528 TAGATTTGAG
86152538 GCCAGAGCACCT
1 GCCAGAGCACCT
86152550 GCCAGAGCACCT
1 GCCAGAGCACCT
*
86152562 GCTAGAGC
1 GCCAGAGC
86152570 CTATTCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.38, G:0.28, T:0.09
Consensus pattern (12 bp):
GCCAGAGCACCT
Found at i:86155465 original size:40 final size:40
Alignment explanation
Indices: 86155420--86155586 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
86155410 CGGAATATAA
86155420 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
86155460 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
86155500 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86155540 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86155579 CCGGATAT
1 CCGGATAT
86155587 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86155570 original size:80 final size:79
Alignment explanation
Indices: 86155436--86155584 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
86155426 ATAATCACGT
*
86155436 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
86155501 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
86155516 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
86155579 CCGGAT
64 CCGGAT
86155585 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:86162179 original size:40 final size:40
Alignment explanation
Indices: 86162130--86162341 Score: 381
Period size: 40 Copynumber: 5.3 Consensus size: 40
86162120 GGGACCTAGC
*
86162130 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
86162170 CCGGATACATCACTAGCACGAATGCTCCTCGCGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCCTCG-GAACTTAGT
86162211 CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
86162251 CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
* *
86162291 CCGGATACATCAC-AGCACGAATGCTCTTCGGAACTTAGC
1 CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
86162330 CCGGATACATCA
1 CCGGATACATCA
86162342 GTCTCAATTC
Statistics
Matches: 168, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
39 36 0.21
40 92 0.55
41 40 0.24
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
Found at i:86162246 original size:81 final size:80
Alignment explanation
Indices: 86162130--86162341 Score: 390
Period size: 81 Copynumber: 2.6 Consensus size: 80
86162120 GGGACCTAGC
86162130 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
86162195 TCCTCGCGAACTTAGT
66 TCCTCG-GAACTTAGT
*
86162211 CCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
86162276 TCCTCGGAACTTAGT
66 TCCTCGGAACTTAGT
*
86162291 CCGGATACATCAC-AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCA
86162342 GTCTCAATTC
Statistics
Matches: 128, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
79 36 0.28
80 22 0.17
81 70 0.55
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (80 bp):
CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
TCCTCGGAACTTAGT
Found at i:86164274 original size:37 final size:36
Alignment explanation
Indices: 86164224--86164310 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
86164214 TGCGAAGTCT
86164224 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
86164260 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
86164297 TCACCCGGAACATA
1 T-ACCCGG-ACATA
86164311 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:86164481 original size:48 final size:49
Alignment explanation
Indices: 86164379--86164541 Score: 301
Period size: 49 Copynumber: 3.3 Consensus size: 49
86164369 TTTGCCACAT
*
86164379 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
86164428 ATATATACACACTTTCACATTCATCACGTC-GCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
86164476 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
86164525 ACATATACACACTTTCA
1 ATATATACACACTTTCA
86164542 TACATATTTC
Statistics
Matches: 111, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
48 48 0.43
49 63 0.57
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:86168199 original size:40 final size:40
Alignment explanation
Indices: 86168150--86168420 Score: 472
Period size: 40 Copynumber: 6.8 Consensus size: 40
86168140 CCAGCGCGAT
* * * *
86168150 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
86168190 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
86168230 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
86168270 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
86168310 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
86168350 TGCT-CTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
86168389 TGCTCTTCGGAACTTAGCCCGGATACATCACT
1 TGCTCCTCGGAACTTAGTCCGGATACATCACT
86168421 CTCAATTCTC
Statistics
Matches: 224, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
39 39 0.17
40 185 0.83
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:86170354 original size:37 final size:36
Alignment explanation
Indices: 86170304--86170390 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
86170294 TGCGAAGTCT
86170304 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
86170340 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
86170377 TCACCCGGAACATA
1 T-ACCCGG-ACATA
86170391 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:86170520 original size:49 final size:49
Alignment explanation
Indices: 86170459--86170622 Score: 301
Period size: 49 Copynumber: 3.3 Consensus size: 49
86170449 TTTGCCACAT
*
86170459 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
86170508 ATATATACACACTTTCACATTCATCACGTCGACCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
86170557 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
86170606 ACATATACACACTTTCA
1 ATATATACACACTTTCA
86170623 TACATATTTC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:86174116 original size:40 final size:40
Alignment explanation
Indices: 86174067--86174326 Score: 253
Period size: 40 Copynumber: 6.5 Consensus size: 40
86174057 CCAGCATGAT
*
86174067 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86174107 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86174147 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
86174187 TGCTCTTCAGAACTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATA-CATCACTAGCACGAA
* * * * * *
86174226 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGGACTTAGCCCGGATACATC-ACT-AGCACGAA
* * **
86174267 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
86174307 TGC-CTTCGGGACTTAGCCCG
1 TGCTCTTCGGGACTTAGCCCG
86174327 AGTATCATAA
Statistics
Matches: 189, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
39 21 0.11
40 164 0.87
41 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86176464 original size:40 final size:40
Alignment explanation
Indices: 86176419--86176548 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
86176409 CGGAATACAA
86176419 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** * *
86176459 CCGGATAGAATGACTCGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* *
86176499 CCGGATATAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
86176539 CCGGATATAA
1 CCGGATATAA
86176549 TTCCAGCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:86179527 original size:37 final size:37
Alignment explanation
Indices: 86179477--86179567 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
86179467 TTATTACGAA
86179477 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
86179514 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
86179551 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
86179568 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:86179662 original size:48 final size:48
Alignment explanation
Indices: 86179607--86179806 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
86179597 TGTTACAACA
*
86179607 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
86179655 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
86179703 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
86179751 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
86179799 TTCACATT
1 TTCACATT
86179807 CATCACATCG
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:86179906 original size:47 final size:47
Alignment explanation
Indices: 86179798--86180081 Score: 469
Period size: 47 Copynumber: 6.0 Consensus size: 47
86179788 CACACATATG
*
86179798 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
*
86179847 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
* *
86179894 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
*
86179943 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
*
86179990 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
*
86180037 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
86180082 ATCTCCTACA
Statistics
Matches: 223, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
47 143 0.64
49 80 0.36
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
Found at i:86179916 original size:96 final size:96
Alignment explanation
Indices: 86179798--86180081 Score: 518
Period size: 96 Copynumber: 3.0 Consensus size: 96
86179788 CACACATATG
*
86179798 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
86179863 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
86179894 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
86179959 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
* *
86179990 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
86180053 TTGGCCATTAGGCCTTATCACATATATAC
66 TCGGCCATTAGGCCTTATCACATATATAC
86180082 ATCTCCTACA
Statistics
Matches: 184, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
94 52 0.28
96 132 0.72
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACTC
Found at i:86180059 original size:143 final size:144
Alignment explanation
Indices: 86179799--86180080 Score: 521
Period size: 143 Copynumber: 2.0 Consensus size: 144
86179789 ACACATATGT
86179799 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACCTTCACATTCATCACAT
86179864 CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
65 CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
86179929 ACATATATATACACC
130 ACATATATATACACC
* * *
86179944 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACCTTCACATTCATCACATC
86180008 GGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCA
66 GGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCA
86180073 CATATATA
131 CATATATA
86180081 CATCTCCTAC
Statistics
Matches: 134, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
143 98 0.73
145 36 0.27
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (144 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACCTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCA
CATATATATACACC
Found at i:86183764 original size:39 final size:40
Alignment explanation
Indices: 86183695--86183952 Score: 237
Period size: 39 Copynumber: 6.5 Consensus size: 40
86183685 CCAGCATGAT
* *
86183695 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
86183735 TGCTCTTCGGAACTTAGTCC-GATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
86183774 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
86183814 TGCTCTTC-GAACTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * * *
86183852 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACT-AGCACGAA
* * **
86183893 TGC-CTTCGG-TCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
86183932 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
86183953 GTATCATTCA
Statistics
Matches: 186, Mismatches: 21, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
38 14 0.08
39 94 0.51
40 75 0.40
41 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86183849 original size:79 final size:79
Alignment explanation
Indices: 86183693--86183861 Score: 229
Period size: 79 Copynumber: 2.2 Consensus size: 79
86183683 CACCAGCATG
*
86183693 ATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAT
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAT
* * *
86183758 ACATCACTAGCACGA
66 AAACCACAAGCAC-A
**
86183773 A-TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GAACTTAG-CCGGA
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCC-GA
86183835 TATAACCACAAGCACA
65 TA-AACCACAAGCACA
86183851 ATTGC-CTTCGG
1 ATTGCTCTTCGG
86183862 GTCTTAACCC
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
77 2 0.03
78 20 0.25
79 57 0.71
80 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAT
AAACCACAAGCACA
Found at i:86185869 original size:37 final size:37
Alignment explanation
Indices: 86185819--86185909 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
86185809 TTATTACGAA
86185819 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
86185856 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
86185893 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
86185910 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:86186004 original size:48 final size:48
Alignment explanation
Indices: 86185949--86186148 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
86185939 TGTTACAACA
*
86185949 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
86185997 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
86186045 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
86186093 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
86186141 TTCACATT
1 TTCACATT
86186149 CATCACATCG
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:86186194 original size:49 final size:49
Alignment explanation
Indices: 86186140--86186423 Score: 470
Period size: 47 Copynumber: 5.9 Consensus size: 49
86186130 CACACATATG
86186140 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
86186189 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
86186236 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAGATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
86186285 TTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
86186333 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
86186380 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
86186424 CATCTCCTAC
Statistics
Matches: 219, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
47 88 0.40
48 46 0.21
49 85 0.39
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:86186240 original size:144 final size:144
Alignment explanation
Indices: 86186140--86186421 Score: 483
Period size: 144 Copynumber: 2.0 Consensus size: 144
86186130 CACACATATG
86186140 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* * *
86186205 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
65 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCAGCACATTGGCCATTAGCCCATAT
* *
86186270 CACATATAGATACAC
130 CACATATACACACAC
86186285 TTTCACATTCATCACATGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACAT
1 TTTCACATTCATCACATGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACAT
* * *
86186350 CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
66 CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCAGCACATTGGCCATTAGCCCATATC
86186415 ACATATA
131 ACATATA
86186422 TACATCTCCT
Statistics
Matches: 137, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
144 120 0.88
145 17 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (144 bp):
TTTCACATTCATCACATGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCAGCACATTGGCCATTAGCCCATATC
ACATATACACACAC
Found at i:86190685 original size:40 final size:40
Alignment explanation
Indices: 86190607--86190808 Score: 230
Period size: 40 Copynumber: 5.0 Consensus size: 40
86190597 ACCCAAGTAT
* * *
86190607 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCGCAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
86190646 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
86190686 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
86190726 CTTCGAGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
86190769 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
86190809 TGTAACACCC
Statistics
Matches: 138, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
39 12 0.09
40 91 0.66
41 1 0.01
43 34 0.25
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:86190790 original size:83 final size:80
Alignment explanation
Indices: 86190607--86190808 Score: 248
Period size: 83 Copynumber: 2.5 Consensus size: 80
86190597 ACCCAAGTAT
* * * * *
86190607 CTTCGGGATTTAGCC-GGATATAG-CAACTCGCGCAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCTGGATATAGTC-ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
**
86190670 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
86190686 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGT
86190750 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
86190769 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
86190809 TGTAACACCC
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 15 0.14
80 45 0.42
81 1 0.01
83 46 0.43
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:86192252 original size:40 final size:40
Alignment explanation
Indices: 86192164--86192420 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
86192154 AAGCCAAGTA
* * *
86192164 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
86192202 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
86192242 CCTTCGGGACATAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
86192282 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
86192322 CCTTCGGGACTTAGCCCGGATATAGTAGCTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
86192362 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
86192402 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
86192421 TTATCATCCG
Statistics
Matches: 195, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 165 0.85
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86202308 original size:18 final size:18
Alignment explanation
Indices: 86202285--86202321 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86202275 TTTTCTGACA
86202285 TAGTATCGTATCTTGGGT
1 TAGTATCGTATCTTGGGT
86202303 TAGTATCGTATCTTGGGT
1 TAGTATCGTATCTTGGGT
86202321 T
1 T
86202322 TCTTTCTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.27, T:0.46
Consensus pattern (18 bp):
TAGTATCGTATCTTGGGT
Found at i:86205157 original size:46 final size:46
Alignment explanation
Indices: 86205105--86205192 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
86205095 GGATATTTGG
* * *
86205105 GCATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCGA
*
86205151 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGAT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGAT
86205193 ACGATATGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (46 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCGA
Found at i:86208424 original size:46 final size:46
Alignment explanation
Indices: 86208277--86208584 Score: 211
Period size: 46 Copynumber: 6.5 Consensus size: 46
86208267 TTTGTGTGCT
* *
86208277 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG--AGACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAG-CC
** * * * *
86208322 TAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAGACG-AGAGCT
1 -AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
86208371 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
*
86208417 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* * * * * *
86208461 AATGTAAGACTATGTCTAGGACATGGCA-CTGGCATGGATATGTGAAAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATC-GGCCTCGAGATGT--AAGCC
* * * * *
86208511 AGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGA-TTTTGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGT-A-AGCC
*
86208560 AGTTTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
86208585 GCATTGACTT
Statistics
Matches: 211, Mismatches: 33, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 73 0.35
47 30 0.14
48 19 0.09
49 28 0.13
50 33 0.16
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:86215440 original size:17 final size:17
Alignment explanation
Indices: 86215413--86215457 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
86215403 GTGTGTGACC
86215413 TTTTA-AAGTTTGAAAA
1 TTTTATAAGTTTGAAAA
86215429 TTTTATAAGTTTGAAAA
1 TTTTATAAGTTTGAAAA
86215446 TTTTATAAGTTT
1 TTTTATAAGTTT
86215458 CTCAAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 5 0.18
17 23 0.82
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
TTTTATAAGTTTGAAAA
Found at i:86219862 original size:40 final size:40
Alignment explanation
Indices: 86219807--86219988 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
86219797 TATTCGAATG
86219807 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
86219847 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
86219887 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
86219927 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
86219967 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86219989 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 116 0.87
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:86222738 original size:22 final size:25
Alignment explanation
Indices: 86222691--86222738 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
86222681 AAGCAGCAAC
*
86222691 ACAATCGACTCCAAACAACACTAAA
1 ACAATCGACTCCAAACAACACAAAA
86222716 ACAAT-GAC-CCAAA-AACACAAAA
1 ACAATCGACTCCAAACAACACAAAA
86222738 A
1 A
86222739 ATAGCTACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 9 0.41
23 5 0.23
24 3 0.14
25 5 0.23
ACGTcount: A:0.58, C:0.29, G:0.04, T:0.08
Consensus pattern (25 bp):
ACAATCGACTCCAAACAACACAAAA
Found at i:86223241 original size:41 final size:41
Alignment explanation
Indices: 86223105--86223326 Score: 148
Period size: 41 Copynumber: 5.3 Consensus size: 41
86223095 ATTCGCGGTG
* * *
86223105 TTTATGGGAAAAACGCCGCTATTGCTTTACCTTTAGCGACG
1 TTTATGGGAAAAACGCCGCTATTGTTTTACCTTTAGCGGCA
* * * *
86223146 TTTATGAGAAAAATGTCGCTATCAT-TTTTAACCTTTTGCGGCA
1 TTTATGGGAAAAACGCCGCTAT--TGTTTT-ACCTTTAGCGGCA
* *
86223189 TTTAT-GCAAAAACAG-CGCTATTGTTTTACCTTTCGCGGCA
1 TTTATGGGAAAAAC-GCCGCTATTGTTTTACCTTTAGCGGCA
* * ** *
86223229 TTTGTGGGAAAAATGCTTCTATTGTTGTTATACCTTTAGCGGTA
1 TTTATGGGAAAAACGCCGCTATTG-T-TT-TACCTTTAGCGGCA
* * * * *
86223273 TTTA-GGGAAAAATTGCCACTATT-TCTTTACCTTTTGCAGCG
1 TTTATGGGAAAAA-CGCCGCTATTGT-TTTACCTTTAGCGGCA
*
86223314 TTTATGGCAAAAA
1 TTTATGGGAAAAA
86223327 TGCCACTAAC
Statistics
Matches: 142, Mismatches: 27, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
40 18 0.13
41 49 0.35
42 25 0.18
43 27 0.19
44 23 0.16
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (41 bp):
TTTATGGGAAAAACGCCGCTATTGTTTTACCTTTAGCGGCA
Found at i:86223295 original size:44 final size:44
Alignment explanation
Indices: 86223209--86223295 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
86223199 AACAGCGCTA
* * * **
86223209 TTGTTTTACCTTTCGCGGCATTTGTGGGAAAAATGCTTCTATTG
1 TTGTTATACCTTTAGCGGCATTTGAGGGAAAAATGCCACTATTG
*
86223253 TTGTTATACCTTTAGCGGTATTT-AGGGAAAAATTGCCACTATT
1 TTGTTATACCTTTAGCGGCATTTGAGGGAAAAA-TGCCACTATT
86223296 TCTTTACCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 8 0.22
44 28 0.78
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (44 bp):
TTGTTATACCTTTAGCGGCATTTGAGGGAAAAATGCCACTATTG
Found at i:86232209 original size:32 final size:32
Alignment explanation
Indices: 86232173--86232236 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
86232163 AAAAAACATA
*
86232173 TATGAGTTATCAAATTAAATTAATTAATTTAT
1 TATGAGTTATCAAATTAAAGTAATTAATTTAT
* *
86232205 TATGAGTTATTAAATTCAAGTAATTAATTTAT
1 TATGAGTTATCAAATTAAAGTAATTAATTTAT
86232237 AAGTTTATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (32 bp):
TATGAGTTATCAAATTAAAGTAATTAATTTAT
Found at i:86234590 original size:80 final size:80
Alignment explanation
Indices: 86234506--86234654 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
86234496 TATGGTAACC
* * * *
86234506 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
86234570 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
86234586 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
86234651 CCGG
66 CCGG
86234655 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:86234596 original size:40 final size:38
Alignment explanation
Indices: 86234547--86234654 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
86234537 ATCACGATTT
*
86234547 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
86234587 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
86234627 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
86234655 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:86237277 original size:22 final size:22
Alignment explanation
Indices: 86237249--86237292 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
86237239 AATATGCACC
*
86237249 ATGTTAGCACGATTCAACATTG
1 ATGTTAGCACAATTCAACATTG
*
86237271 ATGTTAGTACAATTCAACATTG
1 ATGTTAGCACAATTCAACATTG
86237293 TTTTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (22 bp):
ATGTTAGCACAATTCAACATTG
Found at i:86248065 original size:16 final size:15
Alignment explanation
Indices: 86248038--86248068 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
86248028 TGAGTATGGT
86248038 TAAATATTAAAAAAA
1 TAAATATTAAAAAAA
*
86248053 TAAATATTTAAAAAA
1 TAAATATTAAAAAAA
86248068 T
1 T
86248069 TATTAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAATATTAAAAAAA
Found at i:86250495 original size:48 final size:48
Alignment explanation
Indices: 86250424--86250597 Score: 244
Period size: 48 Copynumber: 3.6 Consensus size: 48
86250414 GTTATATGAG
86250424 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTTGAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTTGAT
* *
86250472 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTTGAT
* * * *
86250520 ATCCCATGTAAGACCATATCTAGGATATGGCATCGGCATCGATATATGAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT-T-TGAT
* *
86250570 -T-TCGTGTAAGACCATGTCTGGGACATGG
1 ATCCCATGTAAGACCATGTCTGGGACATGG
86250598 TATCAATATG
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
48 107 0.96
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTTGAT
Found at i:86250550 original size:96 final size:97
Alignment explanation
Indices: 86250417--86250694 Score: 291
Period size: 96 Copynumber: 3.0 Consensus size: 97
86250407 CATTAGGGTT
* * *
86250417 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT-T-TGATATCCCATG
1 ATATGAGATCCCATGTAAGACCATATCTAGGATATGGCA-TGGCATCGATATATGATATCCCATG
*
86250480 TAAGACCATGTCTGGGACATGGCATTGGCATCG
65 TAAGACCATGTCTGGGACATGGCATTGGCATCA
* *
86250513 ATATGAGATCCCATGTAAGACCATATCTAGGATATGGCATCGGCATCGATATATGAT-T-TCGTG
1 ATATGAGATCCCATGTAAGACCATATCTAGGATATGGCAT-GGCATCGATATATGATATCCCATG
86250576 TAAGACCATGTCTGGGACATGG---T---ATCA
65 TAAGACCATGTCTGGGACATGGCATTGGCATCA
* * * * *
86250603 ATATGAGA-CAACATGTAAGACCATATCTCGGCTAT--C--GGCATCGATATGTG-TGACCCCAT
1 ATATGAGATC-CCATGTAAGACCATATCTAGGATATGGCATGGCATCGATATATGAT-ATCCCAT
* *
86250662 GTAAGACCATATCTGGGATATGGCATTGGCATC
64 GTAAGACCATGTCTGGGACATGGCATTGGCATC
86250695 TTACTAAGTG
Statistics
Matches: 154, Mismatches: 15, Indels: 29
0.78 0.08 0.15
Matches are distributed among these distances:
84 1 0.01
85 13 0.08
87 23 0.15
88 1 0.01
89 1 0.01
90 34 0.22
93 4 0.03
95 1 0.01
96 70 0.45
97 2 0.01
98 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (97 bp):
ATATGAGATCCCATGTAAGACCATATCTAGGATATGGCATGGCATCGATATATGATATCCCATGT
AAGACCATGTCTGGGACATGGCATTGGCATCA
Found at i:86255570 original size:37 final size:37
Alignment explanation
Indices: 86255511--86255582 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
86255501 AGCTCAGACG
*
86255511 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
86255548 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
86255583 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:86255853 original size:48 final size:48
Alignment explanation
Indices: 86255729--86255913 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
86255719 GCACATCGCC
*
86255729 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
86255779 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
86255827 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
86255875 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
86255914 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
48 84 0.66
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:86255918 original size:98 final size:97
Alignment explanation
Indices: 86255729--86255912 Score: 318
Period size: 98 Copynumber: 1.9 Consensus size: 97
86255719 GCACATCGCC
*
86255729 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
86255794 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
86255827 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
86255890 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
86255913 ATGCATGTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.43
98 46 0.55
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:86255962 original size:47 final size:47
Alignment explanation
Indices: 86255883--86256076 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
86255873 CATACATATT
* * * *
86255883 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
86255930 CCATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86255977 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
86256024 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86256071 TCACAT
1 TCACAT
86256077 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:86256003 original size:22 final size:22
Alignment explanation
Indices: 86255976--86256047 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
86255966 GCTCACATTC
86255976 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
86255998 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
86256022 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
86256045 ATC
1 ATC
86256048 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:86256004 original size:94 final size:94
Alignment explanation
Indices: 86255836--86256076 Score: 281
Period size: 94 Copynumber: 2.6 Consensus size: 94
86255826 ATACATATTT
* * * *
86255836 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
86255898 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* * ** *
86255931 CATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
86255996 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
86256025 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
86256077 AAAATCCTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
93 1 0.01
94 92 0.74
95 18 0.14
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:86263860 original size:40 final size:40
Alignment explanation
Indices: 86263815--86264022 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
86263805 CGGAATACGA
*
86263815 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTA-GCACAAATGCCTTCGGGTCTTAGC
* * * *
86263855 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86263895 CCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
86263935 CCGGATGTAGTCACTAGCTCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
86263975 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
86264015 CCGGATAT
1 CCGGATAT
86264023 CATTCAATTG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86274867 original size:32 final size:32
Alignment explanation
Indices: 86274771--86274883 Score: 122
Period size: 33 Copynumber: 3.5 Consensus size: 32
86274761 TACCTAAAAG
* * *
86274771 GTACAACTAGAAAAGGAATTGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACCCT-TGTGT
* * *
86274804 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
86274837 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
86274869 GTACAA-TGTGAAAAG
1 GTACAACT-TGAAAAG
86274884 TGGTAGCTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
32 29 0.43
33 37 0.55
34 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (32 bp):
GTACAACTTGAAAAGGAAATGTACCCTTGTGT
Found at i:86274913 original size:31 final size:31
Alignment explanation
Indices: 86274876--86275022 Score: 215
Period size: 31 Copynumber: 4.8 Consensus size: 31
86274866 TGTGTACAAT
*
86274876 GTGAAAAGTGGTAGCTTCGGCTACTTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
86274907 GTGAAAAGTGGTAGCTTTGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
86274938 GTG-AAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
86274968 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
86274999 GTGAATAGTGGTAGCTTCGGCTAC
1 GTGAAAAGTGGTAGCTTCGGCTAC
86275023 AAGTGACAAG
Statistics
Matches: 103, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
30 28 0.27
31 75 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:86274951 original size:61 final size:61
Alignment explanation
Indices: 86274880--86275022 Score: 214
Period size: 61 Copynumber: 2.3 Consensus size: 61
86274870 TACAATGTGA
* *** *
86274880 AAAGTGGTAGCTTCGGCTACTTGATCAGTGAAAAGTGGTAGCTTTGGCTACCTGATTAGTG
1 AAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTG
* *
86274941 AAAGTAGTAGCTTCGGCTACCTGATTAGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTG
1 AAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTG
86275002 AATAGTGGTAGCTTCGGCTAC
1 AA-AGTGGTAGCTTCGGCTAC
86275023 AAGTGACAAG
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 56 0.77
62 17 0.23
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (61 bp):
AAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTG
Found at i:86275143 original size:27 final size:27
Alignment explanation
Indices: 86275112--86275176 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
86275102 TAGTTGAACT
*
86275112 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
86275139 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
86275166 ATAGCAAAGTG
1 ATGGCAAAGTG
86275177 TTCAATGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:86275269 original size:34 final size:34
Alignment explanation
Indices: 86275231--86275304 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
86275221 CATGGAAAAG
*
86275231 TGTGAAACGTAGGTATGGAATTTCCATACCGAGT
1 TGTGAAACGCAGGTATGGAATTTCCATACCGAGT
* ** *
86275265 TGTGAAATGCAGGTATGGTGTTTCCATACTGAGT
1 TGTGAAACGCAGGTATGGAATTTCCATACCGAGT
86275299 TGTGAA
1 TGTGAA
86275305 TCATGTCACT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (34 bp):
TGTGAAACGCAGGTATGGAATTTCCATACCGAGT
Found at i:86286053 original size:38 final size:38
Alignment explanation
Indices: 86286009--86286083 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
86285999 AAATAAAAAT
86286009 GAAATTCGGGTCTAGATCGGGGGAAAAATAAAGTAATC
1 GAAATTCGGGTCTAGATCGGGGGAAAAATAAAGTAATC
86286047 GAAATTCGGGTCTAGATCGGGGGAAAAATAAAGTAAT
1 GAAATTCGGGTCTAGATCGGGGGAAAAATAAAGTAAT
86286084 TGACAAATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.40, C:0.09, G:0.29, T:0.21
Consensus pattern (38 bp):
GAAATTCGGGTCTAGATCGGGGGAAAAATAAAGTAATC
Found at i:86307229 original size:40 final size:40
Alignment explanation
Indices: 86307123--86307333 Score: 147
Period size: 40 Copynumber: 5.2 Consensus size: 40
86307113 TGCTGGAAAT
* * * * * **
86307123 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
86307163 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * *
86307203 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
86307242 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * *
86307283 CATATCCGGGCTATGTCCCGAAGGCGTTCTTGAACGAGT-AGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTG--CGAGTCA-C
86307325 TATATCCGG
1 TATATCCGG
86307334 TTAAGCTCCG
Statistics
Matches: 133, Mismatches: 33, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.89
41 1 0.01
42 13 0.10
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:86307248 original size:80 final size:80
Alignment explanation
Indices: 86307128--86307307 Score: 184
Period size: 80 Copynumber: 2.2 Consensus size: 80
86307118 GAAATTATAA
* * * *
86307128 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATGGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
86307193 TGCGAGTCATTC-TAT
66 TGCGAGTCA-CCATAT
* * * * * * *
86307208 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATGGTGCAAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
* *
86307272 GTGCGGGTTACCATAT
65 GTGCGAGTCACCATAT
* *
86307288 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAGACCCGAAGGC
86307308 GTTCTTGAAC
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 2 0.02
80 80 0.98
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATGGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCACCATAT
Found at i:86315300 original size:40 final size:38
Alignment explanation
Indices: 86315251--86315394 Score: 137
Period size: 40 Copynumber: 3.7 Consensus size: 38
86315241 TGCTGGAAAT
* * *
86315251 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTCG
*
86315290 CTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTC-G
* * *
86315331 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAATCG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
* * *
86315369 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
86315395 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 26 0.30
40 58 0.67
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
Found at i:86315420 original size:79 final size:80
Alignment explanation
Indices: 86315256--86315439 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 80
86315246 GAAATTATAA
* * * *
86315256 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
86315321 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAT
* * * * *
86315336 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
* *
86315399 GTGCGGGTTA-CCATAT
65 GTGCGAGTCATCC-TAT
* * *
86315415 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
86315440 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.68
80 26 0.30
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAT
Found at i:86323496 original size:22 final size:22
Alignment explanation
Indices: 86323470--86323518 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
86323460 ATACTCCTAT
*
86323470 TAAAATAGATTCTTTTCAAGCC
1 TAAAATAGATTCTTTTCAACCC
*
86323492 TAAAATAGATTCTTTTCATCCC
1 TAAAATAGATTCTTTTCAACCC
86323514 TAAAA
1 TAAAA
86323519 CAAATCTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (22 bp):
TAAAATAGATTCTTTTCAACCC
Found at i:86331158 original size:15 final size:15
Alignment explanation
Indices: 86331138--86331197 Score: 79
Period size: 15 Copynumber: 4.0 Consensus size: 15
86331128 GCTCATTTGA
86331138 TCATAATAATAATTC
1 TCATAATAATAATTC
86331153 TCATAATAATAA-T-
1 TCATAATAATAATTC
*
86331166 TCATACATATATCATTC
1 TCATA-ATA-ATAATTC
86331183 TCATAATAATAATTC
1 TCATAATAATAATTC
86331198 ATACATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
13 5 0.13
14 4 0.10
15 21 0.54
16 4 0.10
17 5 0.13
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (15 bp):
TCATAATAATAATTC
Found at i:86331185 original size:30 final size:30
Alignment explanation
Indices: 86331149--86331210 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
86331139 CATAATAATA
86331149 ATTCTCATAATAATAATTCATACATATATC
1 ATTCTCATAATAATAATTCATACATATATC
86331179 ATTCTCATAATAATAATTCATACATATATC
1 ATTCTCATAATAATAATTCATACATATATC
86331209 AT
1 AT
86331211 ATGTGCACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (30 bp):
ATTCTCATAATAATAATTCATACATATATC
Found at i:86331187 original size:13 final size:15
Alignment explanation
Indices: 86331164--86331210 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
86331154 CATAATAATA
86331164 ATTCATACATATATC
1 ATTCATACATATATC
*
86331179 ATTC-T-CATAATAATA
1 ATTCATACAT-AT-ATC
86331194 ATTCATACATATATC
1 ATTCATACATATATC
86331209 AT
1 AT
86331211 ATGTGCACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
13 3 0.12
14 3 0.12
15 14 0.54
16 3 0.12
17 3 0.12
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTCATACATATATC
Found at i:86332714 original size:53 final size:54
Alignment explanation
Indices: 86332646--86332852 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 54
86332636 TTCCTTTTTA
* *
86332646 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
86332699 AACTCACCATTGCCATGCCTTGGCATGGTCTCACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
86332753 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
86332808 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
86332853 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 46 0.38
54 37 0.30
55 39 0.32
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:86333218 original size:29 final size:30
Alignment explanation
Indices: 86333185--86333244 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
86333175 CAGTCCTTAA
86333185 CTCT-AACTTTTACAAAATTACAATTTTTC
1 CTCTAAACTTTTACAAAATTACAATTTTTC
* * * *
86333214 CTCTAAACTTTTGCATATTTACACTTTTTC
1 CTCTAAACTTTTACAAAATTACAATTTTTC
86333244 C
1 C
86333245 CCAAGGCTCG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.28, C:0.23, G:0.02, T:0.47
Consensus pattern (30 bp):
CTCTAAACTTTTACAAAATTACAATTTTTC
Found at i:86334158 original size:43 final size:42
Alignment explanation
Indices: 86334111--86334204 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
86334101 TCCCAGATGT
*
86334111 GGTCTTACATGTAACCAAATATCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACATGAAACCAAATA-CGATGCCGA-TGTCCCAGACAG
* * *
86334154 GGTCTTACATGAAATCAAATACGATGCCGATGTCCCAGGCAT
1 GGTCTTACATGAAACCAAATACGATGCCGATGTCCCAGACAG
86334196 GGTCTTACA
1 GGTCTTACA
86334205 CATAAATCTC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 26 0.57
43 20 0.43
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (42 bp):
GGTCTTACATGAAACCAAATACGATGCCGATGTCCCAGACAG
Found at i:86334200 original size:42 final size:43
Alignment explanation
Indices: 86334092--86334204 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
86334082 AGATCGTACA
** *
86334092 ATGCCAAC-GTCCCAGATGTGGTCTTACATGTAACCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGAAACCAAATATCG
* *
86334135 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACATGAAACCAAATATCG
*
86334177 ATGCCGA-TGTCCCAGGCATGGTCTTACA
1 ATGCC-ACTGTCCCAGACATGGTCTTACA
86334205 CATAAATCTC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGAAACCAAATATCG
Found at i:86336165 original size:48 final size:48
Alignment explanation
Indices: 86336046--86336226 Score: 185
Period size: 48 Copynumber: 3.9 Consensus size: 48
86336036 CACATAGAAA
* * * * *
86336046 GATGCCAATGTCATATCCCATATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACAAGGGATCAAATATC
* * * * **
86336094 GAAGCC-A----ATAGCCCAGCTATGGTCTTACACAGTG-TCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACA-AGGGATCAAATATC
86336137 GATGCCAATGCCATATCCCAGATATGGTCTTACAAGGGATCAAATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACAAGGGATCAAATATC
* * *
86336185 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACAAGGGATCA
86336227 CACATAACCC
Statistics
Matches: 109, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 31 0.28
44 3 0.03
47 4 0.04
48 71 0.65
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACAAGGGATCAAATATC
Found at i:86343981 original size:48 final size:47
Alignment explanation
Indices: 86343923--86344084 Score: 209
Period size: 48 Copynumber: 3.4 Consensus size: 47
86343913 TAGCCCAAGT
* * *
86343923 ATGGTCTTACATGATGTCGCATATCGATGCCAATGCCATATCCCAGAT
1 ATGGTCTTACATGA-GTCACATATCGATGCCAATGCCATGTCCCAGAC
* * *
86343971 AAGGTCTTACAT-AGGATCAAATATCGATGCCAATGCCATGTCCCGGAC
1 ATGGTCTTACATGA-G-TCACATATCGATGCCAATGCCATGTCCCAGAC
*
86344019 ATGGTCTTACATGGAATCACATATCGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACAT-GAGTCACATATCGATGCCAATGCCATGTCCCAGAC
*
86344067 ATGGTCTTACATGGGTCA
1 ATGGTCTTACATGAGTCA
86344085 GACATAACCC
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
47 6 0.06
48 91 0.93
50 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGGTCTTACATGAGTCACATATCGATGCCAATGCCATGTCCCAGAC
Found at i:86345594 original size:46 final size:46
Alignment explanation
Indices: 86345543--86345671 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 46
86345533 ATGGTTGAGC
*
86345543 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGCAACAGG
* * * *
86345590 -TCCGAATTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAAC-AGG
*
86345635 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTAG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
86345672 GGGCGGGTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 28 0.41
47 27 0.40
48 3 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAACAGG
Found at i:86347794 original size:40 final size:40
Alignment explanation
Indices: 86347720--86347865 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
86347710 CCGCACCAAG
* * * * * *
86347720 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
86347760 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
86347800 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
86347840 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
86347866 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:86347880 original size:40 final size:40
Alignment explanation
Indices: 86347752--86347902 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
86347742 ATCACGATTT
* * * * *
86347752 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
86347792 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
86347832 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* *
86347872 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
86347903 CATTCAATTT
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 17 0.18
40 78 0.80
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:86356958 original size:40 final size:40
Alignment explanation
Indices: 86356856--86357039 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
86356846 AAATTGAATG
* * * * *
86356856 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
86356896 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
86356936 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
86356976 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
86357016 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
86357040 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:86359340 original size:29 final size:29
Alignment explanation
Indices: 86359307--86359380 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
86359297 GTGACGAGAT
86359307 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
86359336 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
86359365 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
86359381 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:86359396 original size:29 final size:29
Alignment explanation
Indices: 86359364--86359439 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
86359354 CTGGAAATAT
* *
86359364 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
86359393 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
86359422 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
86359440 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:86359407 original size:58 final size:58
Alignment explanation
Indices: 86359307--86359439 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
86359297 GTGACGAGAT
* * * * * *
86359307 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
86359365 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
86359423 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
86359440 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:86363939 original size:40 final size:39
Alignment explanation
Indices: 86363774--86363957 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
86363764 AAATTGATTG
* * *
86363774 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
86363814 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
86363854 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
86363894 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
86363933 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
86363958 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:86363982 original size:80 final size:81
Alignment explanation
Indices: 86363814--86363996 Score: 183
Period size: 80 Copynumber: 2.3 Consensus size: 81
86363804 GCTGGAAATT
* * * *
86363814 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
86363879 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
86363895 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
86363958 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* *
86363974 ATAACCGGGCTATGTCCCGAAGG
1 ATAACCGGGCTAAGACCCGAAGG
86363997 TGATTGATCG
Statistics
Matches: 82, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.02
80 80 0.98
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Done.