Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 277 of 438
Found at i:86370080 original size:28 final size:28
Alignment explanation
Indices: 86370008--86370111 Score: 120
Period size: 28 Copynumber: 3.7 Consensus size: 28
86369998 GATTGCATGA
* * * *
86370008 ATATGAATTTGATTGGACCTGACGGGAC
1 ATATGAATGTGATTGGGCCTGATGGGCC
*
86370036 ATATGAAAGTGATTGGGCCTGATGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
*
86370064 ATATGAATGTGATTGGGCAC-AATGGGCC
1 ATATGAATGTGATTGGGC-CTGATGGGCC
* *
86370092 ACATGAATGAGATTGGGCCT
1 ATATGAATGTGATTGGGCCT
86370112 AAAGGGGCCA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
27 1 0.02
28 63 0.97
29 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTGATGGGCC
Found at i:86370128 original size:29 final size:29
Alignment explanation
Indices: 86370046--86370128 Score: 91
Period size: 28 Copynumber: 2.9 Consensus size: 29
86370036 ATATGAAAGT
* * *
86370046 GATTGGGCCT-GATGGGCCATATGAATGT
1 GATTGGGCCTAAATGGGCCAAATGAATGA
*
86370074 GATTGGG-C-ACAATGGGCCACATGAATGA
1 GATTGGGCCTA-AATGGGCCAAATGAATGA
*
86370102 GATTGGGCCTAAAGGGGCCAAATGAAT
1 GATTGGGCCTAAATGGGCCAAATGAAT
86370129 AAGTAGGGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
27 1 0.02
28 29 0.63
29 15 0.33
30 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.34, T:0.22
Consensus pattern (29 bp):
GATTGGGCCTAAATGGGCCAAATGAATGA
Found at i:86371399 original size:17 final size:18
Alignment explanation
Indices: 86371366--86371399 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86371356 TTCAAAGAAG
86371366 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
86371384 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
86371400 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:86373599 original size:17 final size:17
Alignment explanation
Indices: 86373574--86373608 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
86373564 CAAAGGTAAG
*
86373574 TACTTTTCCCAACTACC
1 TACTCTTCCCAACTACC
86373591 TACTCTTCCCAACTACC
1 TACTCTTCCCAACTACC
86373608 T
1 T
86373609 TGGAATTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.43, G:0.00, T:0.34
Consensus pattern (17 bp):
TACTCTTCCCAACTACC
Found at i:86387715 original size:43 final size:43
Alignment explanation
Indices: 86387625--86387718 Score: 129
Period size: 42 Copynumber: 2.2 Consensus size: 43
86387615 ATGATTTTCG
* *
86387625 TGTAAGA-CTATGTCTGGGACATTGGCATCATATTTAATTTCA
1 TGTAAGACCTATGTCTGGGACAGTGGCATCATATTTAATTACA
* *
86387667 TGTAAGACCT-TGTCTGGGACAGTGGCATTGATATTTGATTACA
1 TGTAAGACCTATGTCTGGGACAGTGGCA-TCATATTTAATTACA
86387710 TGTAAGACC
1 TGTAAGACC
86387719 ACGTCTAGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 23 0.50
43 23 0.50
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (43 bp):
TGTAAGACCTATGTCTGGGACAGTGGCATCATATTTAATTACA
Found at i:86387736 original size:43 final size:43
Alignment explanation
Indices: 86387586--86387738 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 43
86387576 GTGCTTTCGT
* * *
86387586 GACCACGTCTGGGACGTTGGCATCGACT-TATGATTTTCGTGTAA
1 GACCACGTCTGGGACGTTGGCATTGA-TATTTGA-TTTCATGTAA
* * * * *
86387630 GACTATGTCTGGGACATTGGCA-TCATATTTAATTTCATGTAA
1 GACCACGTCTGGGACGTTGGCATTGATATTTGATTTCATGTAA
** *
86387672 GACCTTGTCTGGGACAG-TGGCATTGATATTTGATTACATGTAA
1 GACCACGTCTGGGAC-GTTGGCATTGATATTTGATTTCATGTAA
*
86387715 GACCACGTCTAGGACGTTGGCATT
1 GACCACGTCTGGGACGTTGGCATT
86387739 ATACGAGCTT
Statistics
Matches: 88, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 29 0.33
43 40 0.45
44 19 0.22
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
GACCACGTCTGGGACGTTGGCATTGATATTTGATTTCATGTAA
Found at i:86388083 original size:19 final size:19
Alignment explanation
Indices: 86388059--86388103 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
86388049 TTTGTATATG
86388059 GCTTACTAAGCTTTTGAAA
1 GCTTACTAAGCTTTTGAAA
86388078 GCTTACTAAGCTTTTGAAA
1 GCTTACTAAGCTTTTGAAA
86388097 GCTTACT
1 GCTTACT
86388104 TTGTGTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (19 bp):
GCTTACTAAGCTTTTGAAA
Found at i:86391580 original size:40 final size:40
Alignment explanation
Indices: 86391518--86391732 Score: 321
Period size: 40 Copynumber: 5.4 Consensus size: 40
86391508 AAACCAAGTA
* *
86391518 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
86391557 CCTTCGGGACTTGGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
86391597 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
86391637 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
86391677 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
86391717 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
86391733 TGGTTACCAT
Statistics
Matches: 165, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.08
40 151 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86398592 original size:2 final size:2
Alignment explanation
Indices: 86398585--86398614 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
86398575 CGGCTCTTGC
86398585 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86398615 TTGCACATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86399407 original size:40 final size:40
Alignment explanation
Indices: 86399323--86399514 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
86399313 TCGAATGATG
* *
86399323 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
86399362 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
86399403 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
86399442 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
* * *
86399482 ACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
86399515 AGCTATATCC
Statistics
Matches: 134, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
39 35 0.26
40 88 0.66
41 11 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:86399459 original size:79 final size:79
Alignment explanation
Indices: 86399323--86399540 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
86399313 TCGAATGATG
* * **
86399323 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
86399387 TGTGCGAGTTACTA-A
64 TGTGCGAGTTACTACA
* *
86399402 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATT
86399466 TGTGCGAGTTACTACA
64 TGTGCGAGTTACTACA
* * * *
86399482 ACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
86399541 TATGTGATTC
Statistics
Matches: 120, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 73 0.61
80 46 0.38
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTACA
Found at i:86401786 original size:40 final size:40
Alignment explanation
Indices: 86401731--86401898 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
86401721 TGAATGATAC
* *
86401731 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* * *
86401771 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATAT
* * * *
86401811 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* * * * *
86401851 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
86401891 CC-GGCTAA
1 CCGGGCTAA
86401899 ATTCCGAAGA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
Found at i:86401864 original size:80 final size:80
Alignment explanation
Indices: 86401731--86401898 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
86401721 TGAATGATAC
* * * *
86401731 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
86401795 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
86401811 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
**
86401876 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
86401891 CC-GGCTAA
1 CCGGGCTAA
86401899 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 6 0.08
80 68 0.88
81 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:86404149 original size:888 final size:886
Alignment explanation
Indices: 86402561--86404163 Score: 2379
Period size: 888 Copynumber: 1.8 Consensus size: 886
86402551 TAGGTAGACC
* * *
86402561 TATGTATGACAAAACTCTAGTTGGTCCATGGAAACCACGAAATAGGTAAAGTTACCTTGAAAACA
1 TATGTATGACAAAACTCTAGTCGATCCATGGAAACCACGAAATAGGTAAAGTTACCTTAAAAACA
* * * * *
86402626 GATGCTGACAGCAGCAGTGGTGTGGATTTGAAAAATCACTAAAATTTGTAGGAATGGAATTAAAT
66 GATGCTGACAGCAGCAGTGATGTGGATGTGAAAAATCACTAAAAATAGAAGGAATGGAATTAAAT
* *
86402691 GGAGAATAAATTATTTAAATGAACCTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
131 AGAGAATAAATTATGTAAATGAACCTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
* * * * *
86402756 TATGAGTTGTATGTTAAGAGATATTTAGGTTTTCGTGAAACAGGGCCAGAACGGTTTCTGGATTC
196 TATGAATAGTATATTAAGAGATATTAAAGTTTTCGTGAAACAGGGCCAGAACGGTTTCTGGATTC
* * * *
86402821 CCTGTTCCGACTTTGGAAATTCATTGTAAATTAACCAGAGATAATTAGGAGTCAGGTCATATATG
261 CCTGATCCGACTTTGGAAATTCATTATAAATTAACCAGAGACAATTAGAAGTCAGGTCATATATG
*
86402886 TATAGATTCCTCTTTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTTAAGCCCTGTACA
326 TATAGATTCCTCTTTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACA
* * * *
86402951 GGGGATATTCAAGTTGTAACGTGCGAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGACTTTA
391 GGGGATATCCAAGTCGTAAC-TGCGAAGATCAGTGTAGTCGACCCCTGTAACAGGGGAGACTTTA
86403016 ACTAATAAACTGTACTAATTGACCCGACCAAAAATTCTAGAAAAAATATAGTAGATGGAAATATG
455 ACTAATAAACTGTACTAATTGACCCGACCAAAAATTCTAGAAAAAATATAGTAGATGGAAATATG
*
86403081 AGTCTAATTTCAGGGAAAAATTACGAAACTGATTTTCGAGCTTTGGAACTCAAGATATGATTTTT
520 AGTCTAATTTCAGGGAAAAATTACGAAACTGATTTTCGAACTTTGGAACTCAAGATATGATTTTT
* * * * *
86403146 AAGGTGACAGTGATGCAGTAACCAGCTCGTCTGGAAAATTTTAAATGGACTGTGAAATGATTAAG
585 AAGGTGACAGTGACGCAGTAACCAACTCGCCTGGAAAATTTTAAATGGACTGTGAAATAATGAAG
* * * * * * *
86403211 TTAAGTCTGTGTGCACCTTGTGTTCGACTCCGGTAACGGACTCGGGTACGGGGTGTTACACTTTT
650 TTAAGCCCGTGTACACCTCGTGTCCGACTCCGGAAACGGACTCGGGTACGGGGTGTTACAATTTT
86403276 GTTGTTGGTCATGAACCTTTCGGTTTTGTGTAAATTTGGATAGCCATGCGAAAATGGCTTAAATA
715 GTTGTTGGTCATGAACCTTTCGGTTTTGTGTAAATTTGGATAGCCATGCGAAAATGGCTTAAATA
86403341 TACTTTTATCATAGCATTATAATCGTTTTGTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTA
780 TACTTTTATCATAGCATTATAATCGTTTTGTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTA
86403406 ACAGTTAGCCATGGGAATGGTTATTCATGATCACTTTTGGTA
845 ACAGTTAGCCATGGGAATGGTTATTCATGATCACTTTTGGTA
* * *
86403448 TATGTATGAC-AAACTCTAGTCGATCCATGGAGGATCATGAAATAGGTAAAGTTTACCTTAAAAA
1 TATGTATGACAAAACTCTAGTCGATCCATGGA-AACCACGAAATAGGTAAAG-TTACCTTAAAAA
* **
86403512 TAGATGCTGGTAGCAGCAGTGATGTGGATGTGAAAAATCACTAAAAATAGAAGGAATGGAATTAA
64 CAGATGCTGACAGCAGCAGTGATGTGGATGTGAAAAATCACTAAAAATAGAAGGAATGGAATTAA
* * *
86403577 ATAGTGAATAAATTATGT-AATCGAACCTTGATGAATCTATTTTCATA-GGAAAGTAACGAAACG
129 ATAGAGAATAAATTATGTAAAT-GAACCTTGATGAATCTACTTTCATATGG-AAGAAACGAAACG
* * * *
86403640 TTCATATGAATAGTATATTATGAGATGTTAAAGTTTTCGTGAGACAGGGCCAGAACGGTTTCTGG
192 GTCATATGAATAGTATATTAAGAGATATTAAAGTTTTCGTGAAACAGGGCCAGAACGGTTTCTGG
* * *
86403705 ATT-CCTGATCTGACTTTGGAAATTCATTATAAATTAACCAGAGACATTTAGAAGTCA-TTACAT
257 ATTCCCTGATCCGACTTTGGAAATTCATTATAAATTAACCAGAGACAATTAGAAGTCAGGT-CAT
* *
86403768 ATATGTATAGATTCCTTTTTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCT
321 ATATGTATAGATTCCTCTTTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCT
86403833 GTACAGGGAGATATCCAAGTCGTAA-TGCATGAAGATCAGTGTAGTCG-CACCCTGTAACAGGGG
386 GTACAGGG-GATATCCAAGTCGTAACTGC--GAAGATCAGTGTAGTCGAC-CCCTGTAACAGGGG
*
86403896 AGACTTTAACTAATAAACTGTACTAATTG-CCCGACCAAAAATTCTAGAAAAAA-ATCTGTAGAT
447 AGACTTTAACTAATAAACTGTACTAATTGACCCGACCAAAAATTCTAGAAAAAATAT-AGTAGAT
* * *
86403959 GGACATATGAGTCTAGTTTCAGGGAAAAATTACGAAACTGATTTTCGAAATTTTGGAACTCAAGA
511 GGAAATATGAGTCTAATTTCAGGGAAAAATTACGAAACTGATTTTCG-AACTTTGGAACTCAAGA
* *
86404024 TATGA-TTTTAAGGTGACAGTGACGCAGTTATCCAACT-GCCTGGAAATTTTTAAAATGGACTGT
575 TATGATTTTTAAGGTGACAGTGACGCAG-TAACCAACTCGCCTGGAAAATTTT-AAATGGACTGT
* * *
86404087 GAAAGTAAGTGGA-TTAAGCCCGT-TAACCCCTCGTGTCCGACTCCGGAAACGGTCTC-GGTACG
638 GAAA-TAA-TGAAGTTAAGCCCGTGT-ACACCTCGTGTCCGACTCCGGAAACGGACTCGGGTACG
86404149 GGGTGTTACAATTTT
700 GGGTGTTACAATTTT
86404164 ATTGGTATCA
Statistics
Matches: 636, Mismatches: 64, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
886 25 0.04
887 261 0.41
888 313 0.49
889 35 0.06
890 2 0.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (886 bp):
TATGTATGACAAAACTCTAGTCGATCCATGGAAACCACGAAATAGGTAAAGTTACCTTAAAAACA
GATGCTGACAGCAGCAGTGATGTGGATGTGAAAAATCACTAAAAATAGAAGGAATGGAATTAAAT
AGAGAATAAATTATGTAAATGAACCTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
TATGAATAGTATATTAAGAGATATTAAAGTTTTCGTGAAACAGGGCCAGAACGGTTTCTGGATTC
CCTGATCCGACTTTGGAAATTCATTATAAATTAACCAGAGACAATTAGAAGTCAGGTCATATATG
TATAGATTCCTCTTTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACA
GGGGATATCCAAGTCGTAACTGCGAAGATCAGTGTAGTCGACCCCTGTAACAGGGGAGACTTTAA
CTAATAAACTGTACTAATTGACCCGACCAAAAATTCTAGAAAAAATATAGTAGATGGAAATATGA
GTCTAATTTCAGGGAAAAATTACGAAACTGATTTTCGAACTTTGGAACTCAAGATATGATTTTTA
AGGTGACAGTGACGCAGTAACCAACTCGCCTGGAAAATTTTAAATGGACTGTGAAATAATGAAGT
TAAGCCCGTGTACACCTCGTGTCCGACTCCGGAAACGGACTCGGGTACGGGGTGTTACAATTTTG
TTGTTGGTCATGAACCTTTCGGTTTTGTGTAAATTTGGATAGCCATGCGAAAATGGCTTAAATAT
ACTTTTATCATAGCATTATAATCGTTTTGTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTAA
CAGTTAGCCATGGGAATGGTTATTCATGATCACTTTTGGTA
Found at i:86410826 original size:40 final size:40
Alignment explanation
Indices: 86410769--86410971 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
86410759 TCGAATGATG
* *
86410769 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
86410809 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
86410848 TTCCGGGCTAAG--CCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
86410887 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * *
86410927 ACCGGGCTATGTCCCGAAGGCATTTGAGCTAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
86410967 TCCGG
1 TCCGG
86410972 TTAAATTCCG
Statistics
Matches: 142, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 34 0.24
39 4 0.03
40 96 0.68
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:86410904 original size:78 final size:80
Alignment explanation
Indices: 86410769--86410950 Score: 221
Period size: 78 Copynumber: 2.3 Consensus size: 80
86410759 TCGAATGATG
* *
86410769 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
86410833 TGTGCGAGTTACTA-A
65 TGTGCGAGTTACTATA
* * **
86410848 TTCCGGGCTAAG-CCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
86410910 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
86410927 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATT
86410951 TGAGCTAGTA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
77 1 0.01
78 59 0.66
79 7 0.08
80 22 0.25
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:86416163 original size:40 final size:40
Alignment explanation
Indices: 86416097--86416263 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
86416087 AAATTGAATG
* * *
86416097 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
86416136 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
86416176 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
86416216 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
86416256 ATATCCGG
1 ATATCCGG
86416264 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:86440673 original size:40 final size:40
Alignment explanation
Indices: 86440613--86440795 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
86440603 TATTCGAATG
* *
86440613 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
86440653 ATATCCGGACTAAGATCCGAAGGTATTT-TGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
86440692 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
86440732 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
86440772 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
86440796 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 33 0.27
40 88 0.72
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:86440814 original size:79 final size:79
Alignment explanation
Indices: 86440613--86440827 Score: 249
Period size: 79 Copynumber: 2.7 Consensus size: 79
86440603 TATTCGAATG
* * * * * *
86440613 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGC
*
86440677 ATTTTGCGAGTTGCT
65 ATTTTGCGAGTTGCC
*
86440692 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
86440757 TTTATGCTAG-TGACC
66 TTT-TGCGAGTTG-CC
* * ** *
86440772 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
86440828 AAAGATACTT
Statistics
Matches: 118, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 11 0.09
79 77 0.65
80 30 0.25
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTTGCGAGTTGCC
Found at i:86447006 original size:32 final size:32
Alignment explanation
Indices: 86446970--86447033 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
86446960 GGGGGAGAGT
* *
86446970 TGTGACAGCCCTAAATTGACCCTAGTCGGAAA
1 TGTGACACCCCTAAATTGACCCTAGTCAGAAA
*
86447002 TGTGACACCCCTAATTTGACCCTAGTCAGAAA
1 TGTGACACCCCTAAATTGACCCTAGTCAGAAA
86447034 GTGGTTTCGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (32 bp):
TGTGACACCCCTAAATTGACCCTAGTCAGAAA
Found at i:86449822 original size:47 final size:47
Alignment explanation
Indices: 86449763--86450109 Score: 550
Period size: 47 Copynumber: 7.4 Consensus size: 47
86449753 GATGTACAAG
* * *
86449763 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
86449810 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
86449857 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
86449904 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
86449951 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
86449998 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
86450045 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
86450092 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
86450110 TCCCGAAGGG
Statistics
Matches: 275, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 275 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:86453405 original size:124 final size:124
Alignment explanation
Indices: 86453183--86453407 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
86453173 GAATTATGTG
* * * * * * *
86453183 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
86453248 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
86453307 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
86453372 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
86453408 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:86453529 original size:40 final size:40
Alignment explanation
Indices: 86453402--86453531 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
86453392 TTGCTGGAAA
* * *
86453402 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
86453442 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86453482 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86453522 TTATATCCGG
1 TTATATCCGG
86453532 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86455322 original size:40 final size:40
Alignment explanation
Indices: 86455267--86455618 Score: 562
Period size: 40 Copynumber: 8.8 Consensus size: 40
86455257 CAGTATGTTA
*
86455267 TATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
86455307 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* ** *
86455347 TATCCGGACTAAGTTTCAAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
86455387 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
86455427 TATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
86455467 TATCTGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
86455507 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
86455547 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
86455587 TATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
86455619 TGGACAGAAT
Statistics
Matches: 286, Mismatches: 26, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 11 0.04
40 275 0.96
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:86459612 original size:47 final size:47
Alignment explanation
Indices: 86459553--86459899 Score: 550
Period size: 47 Copynumber: 7.4 Consensus size: 47
86459543 GATGTACAAG
* * *
86459553 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
86459600 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
86459647 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
86459694 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
86459741 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
86459788 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
86459835 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
86459882 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
86459900 TCCCGAAGGG
Statistics
Matches: 275, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 275 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:86462941 original size:40 final size:40
Alignment explanation
Indices: 86462881--86463060 Score: 215
Period size: 40 Copynumber: 4.5 Consensus size: 40
86462871 TATTCGAATG
* * *
86462881 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
86462921 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
86462961 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * **
86463001 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
86463040 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
86463061 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.01
38 13 0.11
39 18 0.15
40 88 0.72
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:86463014 original size:80 final size:79
Alignment explanation
Indices: 86462881--86463060 Score: 247
Period size: 80 Copynumber: 2.3 Consensus size: 79
86462871 TATTCGAATG
* * * *
86462881 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACCCGAAGGC-
* *
86462946 TTTGTGCGAGTTGCT
65 CTTGTGCGAGTGGCT
* *
86462961 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACCCGAAGGCC
*
86463026 TTGTGCGAGTGGTT
66 TTGTGCGAGTGGCT
86463040 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
86463061 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 1 0.01
78 13 0.14
79 18 0.20
80 58 0.64
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACCCGAAGGCC
TTGTGCGAGTGGCT
Found at i:86465826 original size:49 final size:49
Alignment explanation
Indices: 86465768--86465948 Score: 335
Period size: 49 Copynumber: 3.7 Consensus size: 49
86465758 GTATGAGATG
*
86465768 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
86465817 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
86465866 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
86465915 TATACATGTGATAAGGCCTAATGGCCAATGTGAT
1 TATATATGTGATAAGGCCTAATGGCCAATGTGAT
86465949 AAGGCCTAAT
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 129 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:86465948 original size:22 final size:22
Alignment explanation
Indices: 86465920--86465970 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
86465910 GAGTATATAC
86465920 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
86465942 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
86465964 ATGTGAT
1 ATGTGAT
86465971 GAATGTGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:86465948 original size:71 final size:71
Alignment explanation
Indices: 86465871--86466006 Score: 263
Period size: 71 Copynumber: 1.9 Consensus size: 71
86465861 GTGTATATAT
86465871 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAA
86465936 TGGCCA
66 TGGCCA
*
86465942 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAA
86466007 CCTAATGGCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.26
Consensus pattern (71 bp):
ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAA
TGGCCA
Found at i:86465961 original size:120 final size:121
Alignment explanation
Indices: 86465822--86466073 Score: 407
Period size: 125 Copynumber: 2.1 Consensus size: 121
86465812 GTGTATATAT
*
86465822 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG-CCTA
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGACCTA
86465886 ATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCA
66 ATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCA
86465942 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG----A
* * * * *
86466007 CCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCG
62 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCA
86466067 ATGTGAT
1 ATGTGAT
86466074 GAATGTGAAA
Statistics
Matches: 121, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
120 59 0.49
125 62 0.51
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.28
Consensus pattern (121 bp):
ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGACCTA
ATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCA
Found at i:86466023 original size:54 final size:49
Alignment explanation
Indices: 86465942--86466083 Score: 212
Period size: 54 Copynumber: 2.8 Consensus size: 49
86465932 CTAATGGCCA
*
86465942 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
* *
86465991 ATGTGATAAGGCCTAACCTAATGGCCGATGTGATGAATGTGAAGGTGTATATAT
1 ATGTGATAAGG-----CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
86466045 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
86466084 TATATGTGTG
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
49 38 0.45
54 46 0.55
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (49 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
Found at i:86466132 original size:48 final size:48
Alignment explanation
Indices: 86466075--86466226 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
86466065 CGATGTGATG
*
86466075 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
86466123 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
86466171 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
86466219 AATGTGAA
1 AATGTGAA
86466227 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:86466320 original size:37 final size:37
Alignment explanation
Indices: 86466266--86466356 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
86466256 AACTTGGAAA
*
86466266 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
86466304 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
86466341 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
86466357 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:86470994 original size:48 final size:48
Alignment explanation
Indices: 86470923--86471212 Score: 526
Period size: 48 Copynumber: 6.0 Consensus size: 48
86470913 AGATAAATAT
*
86470923 ATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
86470971 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
86471019 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
86471067 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
86471115 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
86471163 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
86471211 AT
1 AT
86471213 GTGTGTATAT
Statistics
Matches: 235, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 235 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:86471403 original size:37 final size:37
Alignment explanation
Indices: 86471353--86471458 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
86471343 GGAAATATAT
86471353 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
86471390 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
86471427 TCCGGGTAAGACCCGATAACTACGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
86471459 CTATTCGAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:86486068 original size:27 final size:27
Alignment explanation
Indices: 86486029--86486084 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
86486019 TGTGAGCCAG
86486029 TGTAAGACCATGTCTAGGACATGGCAT
1 TGTAAGACCATGTCTAGGACATGGCAT
* *
86486056 TGTAAGACTATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTAGGACATGGCAT
86486083 TG
1 TG
86486085 GCATCGTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
TGTAAGACCATGTCTAGGACATGGCAT
Found at i:86486071 original size:75 final size:75
Alignment explanation
Indices: 86485981--86486130 Score: 248
Period size: 75 Copynumber: 2.0 Consensus size: 75
86485971 TGTGTAACCG
*
86485981 TGTAAGATCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTGTAAGACCATGTCTAG
1 TGTAAGATCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTAG
86486046 GACATGGCAT
66 GACATGGCAT
* *
86486056 TGTAAGA-CTATGTCTGGGACATGGCATTGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTG
1 TGTAAGATC-ATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTA
*
86486120 GGGCATGGCAT
65 GGACATGGCAT
86486131 CGGCATGAGG
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
74 1 0.01
75 69 0.99
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (75 bp):
TGTAAGATCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTAG
GACATGGCAT
Found at i:86488063 original size:18 final size:20
Alignment explanation
Indices: 86488022--86488065 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
86488012 CGGGTAGAGG
86488022 ACACGGGCGTGTCATGAGCC
1 ACACGGGCGTGTCATGAGCC
*
86488042 ACACGGGCGTGT-GTGA-CC
1 ACACGGGCGTGTCATGAGCC
86488060 ACACGG
1 ACACGG
86488066 CCTGTCAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 12 0.52
ACGTcount: A:0.20, C:0.30, G:0.36, T:0.14
Consensus pattern (20 bp):
ACACGGGCGTGTCATGAGCC
Found at i:86494922 original size:40 final size:40
Alignment explanation
Indices: 86494829--86495046 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
86494819 AAGCCAAGTA
* * *
86494829 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
86494867 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
86494907 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
86494947 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
86494987 CCTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
86495028 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
86495047 TTATCATCCA
Statistics
Matches: 161, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.11
40 105 0.65
41 23 0.14
42 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86502718 original size:40 final size:40
Alignment explanation
Indices: 86502639--86502842 Score: 288
Period size: 40 Copynumber: 5.1 Consensus size: 40
86502629 TGGGATTTAA
* *
86502639 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
86502678 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
86502718 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86502758 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
86502798 CCGGA-ACTAGTCACTAGCACAAAATGCCTTTGGGACTTAGC
1 CCGGATA-TAGTAACTCGCAC-AAATGCCTTCGGGACTTAGC
86502839 CCGG
1 CCGG
86502843 TTATCATCCA
Statistics
Matches: 151, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 17 0.11
40 110 0.73
41 23 0.15
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86505117 original size:49 final size:49
Alignment explanation
Indices: 86505047--86505243 Score: 292
Period size: 49 Copynumber: 4.1 Consensus size: 49
86505037 TATCACAGTT
* * * *
86505047 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
*
86505096 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
86505145 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
* *
86505192 ATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTGTCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
86505241 ATA
1 ATA
86505244 TCTTGTACAT
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
47 44 0.33
49 89 0.66
50 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:86505219 original size:96 final size:97
Alignment explanation
Indices: 86505062--86505243 Score: 294
Period size: 96 Copynumber: 1.9 Consensus size: 97
86505052 CTTCCACTTC
* * *
86505062 CATCACATTGACCATTCGGCCTTATCATATATATATATACTTTCACATTCATCACATTGGCCATT
1 CATCACATTGACCATTCGGCCTTATCA-ACATACATACACTTTCACATTCATCACATTGGCCATT
86505127 CGGCCTTATCACATATACATACACCTTCACATT
65 CGGCCTTATCACATATACATACACCTTCACATT
* *
86505160 CATCACATTGGCCATTCGGCCTTATC-ACATACATACACTTTCACATTCATCACGTTGGCCATTC
1 CATCACATTGACCATTCGGCCTTATCAACATACATACACTTTCACATTCATCACATTGGCCATTC
*
86505224 GGCCTTGTCACATATACATA
66 GGCCTTATCACATATACATA
86505244 TCTTGTACAT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 53 0.68
98 25 0.32
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (97 bp):
CATCACATTGACCATTCGGCCTTATCAACATACATACACTTTCACATTCATCACATTGGCCATTC
GGCCTTATCACATATACATACACCTTCACATT
Found at i:86513434 original size:24 final size:24
Alignment explanation
Indices: 86513407--86513457 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
86513397 AAACTGTTTG
86513407 TCATTGTCATTTCAAATTATTAAA
1 TCATTGTCATTTCAAATTATTAAA
86513431 TCATTGTCATTTCAAATTATTAAA
1 TCATTGTCATTTCAAATTATTAAA
86513455 TCA
1 TCA
86513458 AGTATGCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.45
Consensus pattern (24 bp):
TCATTGTCATTTCAAATTATTAAA
Found at i:86522034 original size:23 final size:21
Alignment explanation
Indices: 86521983--86522035 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
86521973 AAATCCCCTA
*
86521983 ATATTAAAAAAAAGGAAAAAT
1 ATATGAAAAAAAAGGAAAAAT
* * *
86522004 AAAAGAAAAAAAGGAGAATAAAT
1 ATATGAAAAAAAAG-GAA-AAAT
86522027 ATATGAAAA
1 ATATGAAAA
86522036 TGTGAATAAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 10 0.42
22 3 0.12
23 11 0.46
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (21 bp):
ATATGAAAAAAAAGGAAAAAT
Found at i:86524252 original size:51 final size:49
Alignment explanation
Indices: 86524133--86524326 Score: 199
Period size: 49 Copynumber: 3.9 Consensus size: 49
86524123 CTATTGTGAG
* * * * ** * *
86524133 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATTATTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTA
* * * * *
86524182 GTGATATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGATAACTTC
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TTA
* * * * *
86524232 GATCACGTGTGTAGTACTAAGTGCAGGCTACCACGTGTACCGGATAATTA
1 G-TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTA
*
86524282 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
86524327 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 26, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
49 74 0.63
50 6 0.05
51 37 0.32
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTA
Found at i:86524309 original size:100 final size:100
Alignment explanation
Indices: 86524134--86524326 Score: 298
Period size: 100 Copynumber: 1.9 Consensus size: 100
86524124 TATTGTGAGG
* * * * *
86524134 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATTATTGGTGATATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACCACGTGTACCGGATAATTAGTGACATGTGTAGTACT
* *
86524199 AAGTGTAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
*
86524234 TCACGTGTGTAGTACTAAGTGCAGGCTACCACGTGTACCGGATAATTAGTCG-CATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACCACGTGTACCGGATAATTAGT-GACATGTGTAGTAC
86524298 TAAGTGCAGGCTACTATGCGTACCAGATA
65 TAAGTGCAGGCTACTATGCGTACCAGATA
86524327 GCTTTGGCTA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 83 0.99
101 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACCACGTGTACCGGATAATTAGTGACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:86527898 original size:43 final size:43
Alignment explanation
Indices: 86527845--86528237 Score: 651
Period size: 43 Copynumber: 9.1 Consensus size: 43
86527835 CCAGCATTAC
*
86527845 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
86527888 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* **
86527931 GCCTCCTAGGCACGAAGGCCTAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * *
86527974 GCCTGCTAGGCACGAAGGCCCGAAAATACATCACCAGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
86528017 GCCTGATAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
86528060 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
86528103 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
86528146 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
86528189 GCCTGCTAGGCATGAAGGCCCAAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
86528232 GCCTGC
1 GCCTGC
86528238 GGGATTTAAC
Statistics
Matches: 324, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 324 1.00
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:86531531 original size:28 final size:28
Alignment explanation
Indices: 86531464--86531563 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 28
86531454 ATAGTGAATC
*
86531464 CGCACACTTAGTGCTATATATTTTC-AGCT
1 CGCACACTTAGTGCTATA-A-TTTCAAACT
*
86531493 CGCACACTTAGTGCTATAGA-ATCAAACT
1 CGCACACTTAGTGCTATA-ATTTCAAACT
* *
86531521 CGCACACTTAGTGCTGACAATTTTAAACT
1 CGCACACTTAGTGCT-ATAATTTCAAACT
86531550 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86531564 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.03
28 19 0.31
29 41 0.66
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAATTTCAAACT
Found at i:86538480 original size:30 final size:29
Alignment explanation
Indices: 86538392--86538492 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 29
86538382 ATAGTGAATC
* * *
86538392 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTAAACT
*
86538421 CGCACACTTAGTGCTATAGAA--TCAAACT
1 CGCACACTTAGTGCTATA-AATTTTAAACT
86538449 CGCACACTTAGTGCTGA-ACAATTTTAAACT
1 CGCACACTTAGTGCT-ATA-AATTTTAAACT
86538479 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86538493 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
28 22 0.35
29 19 0.31
30 21 0.34
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAAATTTTAAACT
Found at i:86543071 original size:25 final size:25
Alignment explanation
Indices: 86543043--86543093 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
86543033 TTTACATCTC
* * *
86543043 AAAAATTTTATATATATAAAAGTTA
1 AAAAAATTAATATATAAAAAAGTTA
*
86543068 AAAAAATTAATATATAAAAAATTTA
1 AAAAAATTAATATATAAAAAAGTTA
86543093 A
1 A
86543094 TATATAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (25 bp):
AAAAAATTAATATATAAAAAAGTTA
Found at i:86543108 original size:16 final size:16
Alignment explanation
Indices: 86543066--86543109 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
86543056 ATATAAAAGT
*
86543066 TAAAAAAATTAATATA
1 TAAAAAATTTAATATA
86543082 TAAAAAATTTAATATA
1 TAAAAAATTTAATATA
*
86543098 TAAAAATTTTAA
1 TAAAAAATTTAA
86543110 AAACTATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAAAAATTTAATATA
Found at i:86547973 original size:41 final size:42
Alignment explanation
Indices: 86547914--86548076 Score: 121
Period size: 42 Copynumber: 3.8 Consensus size: 42
86547904 GGGTTATGTG
* *
86547914 TGATTTCGTGTAAGACCATATC-GGGATATGGCATCGATATT
1 TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
* * **
86547955 TGATTTCATGTAAAACCATTTCTGGGATATGGCATTGATACG
1 TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
* * * * * * * *
86547997 AGATATCGTGTAAGACTATAGCTGGGCTATCGACATCGATATAT
1 TGATTTCATGTAAAACCATATCTGGGATAT-GGCATCGATAT-T
** * * *
86548041 GTGATCCCATGGAAGACCATATCTGAGATATGGCAT
1 -TGATTTCATGTAAAACCATATCTGGGATATGGCAT
86548077 TGGCATCTTA
Statistics
Matches: 90, Mismatches: 28, Indels: 5
0.73 0.23 0.04
Matches are distributed among these distances:
41 19 0.21
42 38 0.42
43 8 0.09
44 4 0.04
45 21 0.23
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.31
Consensus pattern (42 bp):
TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
Found at i:86548073 original size:87 final size:83
Alignment explanation
Indices: 86547919--86548078 Score: 194
Period size: 87 Copynumber: 1.9 Consensus size: 83
86547909 ATGTGTGATT
* * ** * * *
86547919 TCGTGTAAGACCATATCGGGATATGGCATCGATATTTGATTTCATGTAAAACCATTTCTGGGATA
1 TCGTGTAAGACCATAGCGGGATATGACATCGATATTTGATCCCATGGAAAACCATATCTGAGATA
86547984 TGGCATTGATACGAGATA
66 TGGCATTGATACGAGATA
* * *
86548002 TCGTGTAAGACTATAGCTGGGCTATCGACATCGATATATGTGATCCCATGGAAGACCATATCTGA
1 TCGTGTAAGACCATAGC-GGGATAT-GACATCGATAT-T-TGATCCCATGGAAAACCATATCTGA
86548067 GATATGGCATTG
62 GATATGGCATTG
86548079 GCATCTTATT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
83 15 0.24
84 6 0.10
85 10 0.16
86 1 0.02
87 31 0.49
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (83 bp):
TCGTGTAAGACCATAGCGGGATATGACATCGATATTTGATCCCATGGAAAACCATATCTGAGATA
TGGCATTGATACGAGATA
Found at i:86550804 original size:40 final size:40
Alignment explanation
Indices: 86550678--86550806 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
86550668 ATGCTGGAAA
* *
86550678 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
86550718 CTACATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86550757 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86550797 TTATATCCGG
1 TTATATCCGG
86550807 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
38 3 0.04
39 30 0.39
40 43 0.57
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86555193 original size:17 final size:18
Alignment explanation
Indices: 86555154--86555190 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86555144 GTCATTTGTC
86555154 AATAACTTTGGTTGTTAA
1 AATAACTTTGGTTGTTAA
*
86555172 AATAACTTTTGTTGTTAA
1 AATAACTTTGGTTGTTAA
86555190 A
1 A
86555191 TAAACATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (18 bp):
AATAACTTTGGTTGTTAA
Found at i:86558965 original size:16 final size:16
Alignment explanation
Indices: 86558940--86558973 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86558930 AACTTAAATA
* *
86558940 TTTAAGTTTTAACTTT
1 TTTAAATTTTAAATTT
86558956 TTTAAATTTTAAATTT
1 TTTAAATTTTAAATTT
86558972 TT
1 TT
86558974 CATAATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTAAATTTTAAATTT
Found at i:86559009 original size:26 final size:27
Alignment explanation
Indices: 86558958--86559009 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
86558948 TTAACTTTTT
* *
86558958 TAAATTTTAAATTTTTCATAATTATTA
1 TAAATTTTAAATTTTTCAAAAATATTA
*
86558985 TAAATTTT-AATTTTTTAAAAATATT
1 TAAATTTTAAATTTTTCAAAAATATT
86559010 TTGGATTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (27 bp):
TAAATTTTAAATTTTTCAAAAATATTA
Found at i:86559495 original size:2 final size:2
Alignment explanation
Indices: 86559488--86559529 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
86559478 GTGCAACTAT
86559488 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86559530 AAAGTTATCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:86564079 original size:20 final size:20
Alignment explanation
Indices: 86564037--86564086 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
86564027 GCGACCATCA
* * **
86564037 GTGCCTCTGTTTGCACTTTG
1 GTGCCTTTGTTTACACTACG
86564057 GTGCCTTTGTTTACACTACG
1 GTGCCTTTGTTTACACTACG
86564077 GTGCCTTTGT
1 GTGCCTTTGT
86564087 ACAGCACTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.44
Consensus pattern (20 bp):
GTGCCTTTGTTTACACTACG
Found at i:86564096 original size:21 final size:20
Alignment explanation
Indices: 86564056--86564097 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
86564046 TTTGCACTTT
**
86564056 GGTGCCTTTGTTTACACTAC
1 GGTGCCTTTGTACACACTAC
86564076 GGTGCCTTTGTACAGCACTAC
1 GGTGCCTTTGTACA-CACTAC
86564097 G
1 G
86564098 ATGCTTTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (20 bp):
GGTGCCTTTGTACACACTAC
Found at i:86565708 original size:21 final size:21
Alignment explanation
Indices: 86565684--86565738 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
86565674 CTCATATGAG
*
86565684 TTTCAGTTTAACCCTATTGGA
1 TTTCAGTTTAACCCTATTGAA
* * * *
86565705 TTTCTGTTTAGCTCTTTTGAA
1 TTTCAGTTTAACCCTATTGAA
*
86565726 CTTCAGTTTAACC
1 TTTCAGTTTAACC
86565739 ATTATTAGGT
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (21 bp):
TTTCAGTTTAACCCTATTGAA
Found at i:86565778 original size:43 final size:42
Alignment explanation
Indices: 86565678--86565814 Score: 127
Period size: 42 Copynumber: 3.2 Consensus size: 42
86565668 AATTAACTCA
* *
86565678 TATGAGTTTCAGTTTAACCCTATTGGATTTCTGTTTAGCTCT
1 TATGAGCTTCAGTTTAACCCTATTGGATTTCTGTTCAGCTCT
* * * *
86565720 TTTGAACTTCAGTTTAACCATTATTAGGTTTTC-GTTCAGCTCT
1 TATGAGCTTCAGTTTAACC-CTATT-GGATTTCTGTTCAGCTCT
* * *
86565763 TATGAGCTTCCGTTTAACCCT-TGTGTG-TTTCTGTTTAGCACT
1 TATGAGCTTCAGTTTAACCCTAT-TG-GATTTCTGTTCAGCTCT
*
86565805 TATGTGCTTC
1 TATGAGCTTC
86565815 TGTGTAGCCT
Statistics
Matches: 77, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
41 6 0.08
42 36 0.47
43 29 0.38
44 6 0.08
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.47
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTATTGGATTTCTGTTCAGCTCT
Found at i:86572231 original size:40 final size:40
Alignment explanation
Indices: 86572176--86572343 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
86572166 TGAATGATAC
* *
86572176 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
86572216 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
86572256 CTGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
86572296 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
86572336 CC-GGCTAA
1 CCGGGCTAA
86572344 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 23, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
39 6 0.06
40 95 0.92
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:86575093 original size:26 final size:25
Alignment explanation
Indices: 86575064--86575116 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
86575054 ATCGAAAAGT
*
86575064 TCACAAAAAACTTTTAATCAGGAAGC
1 TCACAAAAAACCTTTAATCAGG-AGC
* * *
86575090 TCACGAAGAGCCTTTAATCAGGAGC
1 TCACAAAAAACCTTTAATCAGGAGC
86575115 TC
1 TC
86575117 CGGATAGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (25 bp):
TCACAAAAAACCTTTAATCAGGAGC
Found at i:86575786 original size:14 final size:14
Alignment explanation
Indices: 86575767--86575799 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
86575757 TCGGAAAATA
86575767 AATTCATGCAATTT
1 AATTCATGCAATTT
86575781 AATTCATGCAATTT
1 AATTCATGCAATTT
86575795 AATTC
1 AATTC
86575800 TTATTCCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTCATGCAATTT
Found at i:86576260 original size:19 final size:18
Alignment explanation
Indices: 86576229--86576264 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
86576219 ATATGATGAT
*
86576229 ATTTTTATTTTTTTTATC
1 ATTTTTATCTTTTTTATC
86576247 ATTTTTCATCTTTTTTAT
1 ATTTTT-ATCTTTTTTAT
86576265 TTCACTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (18 bp):
ATTTTTATCTTTTTTATC
Found at i:86576262 original size:21 final size:21
Alignment explanation
Indices: 86576236--86576275 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
86576226 GATATTTTTA
*
86576236 TTTTTT-TTATCATTTTTCATC
1 TTTTTTATT-TCACTTTTCATC
86576257 TTTTTTATTTCACTTTTCA
1 TTTTTTATTTCACTTTTCA
86576276 ATTTCATCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTTATTTCACTTTTCATC
Found at i:86604071 original size:46 final size:47
Alignment explanation
Indices: 86603965--86604086 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
86603955 TGTCTTCGAC
** * *
86603965 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
86604015 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
86604061 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
86604087 CTGTCTGTCC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:86611041 original size:46 final size:47
Alignment explanation
Indices: 86610935--86611056 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
86610925 TGTCTTCGAC
** * *
86610935 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
86610985 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
86611031 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
86611057 CTGTCCTGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:86612340 original size:45 final size:45
Alignment explanation
Indices: 86612276--86612404 Score: 231
Period size: 45 Copynumber: 2.9 Consensus size: 45
86612266 CAATATCATT
* * *
86612276 TCACCGGCATTATAGCCTGCTAGACTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
86612321 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
86612366 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
86612405 GGTGTTGTAC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
Found at i:86613285 original size:50 final size:49
Alignment explanation
Indices: 86613231--86613376 Score: 177
Period size: 50 Copynumber: 2.9 Consensus size: 49
86613221 GTAACTTATT
* * *
86613231 CGGAAATAATAAGGGCAAATTTAACATAAAATATTAA-AAGCAAATTTAAC
1 CGGAATTATTAAGAGCAAATTTAACA-AAAATATTAAGAA-CAAATTTAAC
* *
86613281 CGGAATTATTAAGAACAAATTTAACCAAAATTATTAAGAACAAATTTAAC
1 CGGAATTATTAAGAGCAAATTTAA-CAAAAATATTAAGAACAAATTTAAC
* * *
86613331 CGGAATTATTAAGAGAAAATTTAACCGAAATTATTAAGAACAAATT
1 CGGAATTATTAAGAGCAAATTTAA-CAAAAATATTAAGAACAAATT
86613377 AACAAGCTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
50 82 0.95
51 4 0.05
ACGTcount: A:0.52, C:0.10, G:0.11, T:0.27
Consensus pattern (49 bp):
CGGAATTATTAAGAGCAAATTTAACAAAAATATTAAGAACAAATTTAAC
Found at i:86613290 original size:25 final size:25
Alignment explanation
Indices: 86613246--86613376 Score: 176
Period size: 25 Copynumber: 5.2 Consensus size: 25
86613236 ATAATAAGGG
** *
86613246 CAAATTTAACATAAAATATTAA-AA
1 CAAATTTAACCGAAATTATTAAGAA
*
86613270 GCAAATTTAACCGGAATTATTAAGAA
1 -CAAATTTAACCGAAATTATTAAGAA
*
86613296 CAAATTTAACCAAAATTATTAAGAA
1 CAAATTTAACCGAAATTATTAAGAA
*
86613321 CAAATTTAACCGGAATTATTAAGAGA
1 CAAATTTAACCGAAATTATTAAGA-A
86613347 -AAATTTAACCGAAATTATTAAGAA
1 CAAATTTAACCGAAATTATTAAGAA
86613371 CAAATT
1 CAAATT
86613377 AACAAGCTTA
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
24 1 0.01
25 90 0.96
26 3 0.03
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.28
Consensus pattern (25 bp):
CAAATTTAACCGAAATTATTAAGAA
Found at i:86616507 original size:16 final size:17
Alignment explanation
Indices: 86616486--86616518 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86616476 CCCTGGACTG
86616486 TATTCTG-ATGCTTGAT
1 TATTCTGTATGCTTGAT
*
86616502 TATTCTGTATGTTTGAT
1 TATTCTGTATGCTTGAT
86616519 ATCTGTGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (17 bp):
TATTCTGTATGCTTGAT
Found at i:86619048 original size:2 final size:2
Alignment explanation
Indices: 86619041--86619066 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
86619031 ATTTAATTCT
86619041 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
86619067 AATTAACGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:86622115 original size:2 final size:2
Alignment explanation
Indices: 86622104--86622136 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
86622094 CTATTGATAA
86622104 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86622137 TTCGTTCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:86625336 original size:50 final size:51
Alignment explanation
Indices: 86625280--86625416 Score: 206
Period size: 51 Copynumber: 2.7 Consensus size: 51
86625270 ATCTGGTAAG
*
86625280 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGTCATCGGATACA
* * * *
86625330 -AGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACA
1 CA-TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGTCATCGGATACA
86625381 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
86625417 CACAATAGAT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
49 1 0.01
50 34 0.44
51 41 0.53
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGTCATCGGATACA
Found at i:86626915 original size:3 final size:3
Alignment explanation
Indices: 86626907--86626942 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
86626897 TTTTATAGTC
86626907 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86626943 ACTAATGTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:86630112 original size:24 final size:24
Alignment explanation
Indices: 86630085--86630246 Score: 281
Period size: 24 Copynumber: 6.8 Consensus size: 24
86630075 CTTATTATGT
**
86630085 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
86630109 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86630133 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86630157 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
86630181 TCGCACACATAGTGCCATA-TGGA
1 TCGCACACATAGTGCCATAGTAAA
86630204 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86630228 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
86630247 TATTTCCAGC
Statistics
Matches: 131, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
23 21 0.16
24 110 0.84
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:86637942 original size:24 final size:24
Alignment explanation
Indices: 86637889--86638050 Score: 299
Period size: 24 Copynumber: 6.8 Consensus size: 24
86637879 CTTATTATGT
86637889 TCGCACACATAGTGCCATAGT-AA
1 TCGCACACATAGTGCCATAGTAAA
86637912 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86637936 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86637960 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
86637984 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
86638008 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86638032 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
86638051 TATTTCCAGC
Statistics
Matches: 134, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
23 21 0.16
24 113 0.84
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:86639590 original size:18 final size:18
Alignment explanation
Indices: 86639567--86639612 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
86639557 CAAGGTCACG
*
86639567 ATCAATAGT-GTCACTGGC
1 ATCAATA-TCGTCACTAGC
*
86639585 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTAGC
86639603 ATCAATATCG
1 ATCAATATCG
86639613 ATATCATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 24 0.96
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (18 bp):
ATCAATATCGTCACTAGC
Found at i:86639617 original size:15 final size:17
Alignment explanation
Indices: 86639584--86639624 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
86639574 GTGTCACTGG
86639584 CATCAATATCGTCACTAT
1 CATCAATATCG-CACTAT
86639602 CATCAATATCG-A-TAT
1 CATCAATATCGCACTAT
86639617 CATCAATA
1 CATCAATA
86639625 AGAAAACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.48
16 1 0.04
18 11 0.48
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (17 bp):
CATCAATATCGCACTAT
Found at i:86654304 original size:40 final size:40
Alignment explanation
Indices: 86654257--86654501 Score: 361
Period size: 40 Copynumber: 6.1 Consensus size: 40
86654247 CGGGCTTTAA
* *
86654257 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* * *
86654297 CCGGATATACT-AGTTCGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTCA-CTCGCACAAATGCCTTCGGGACTTAGC
*
86654337 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
86654377 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
86654417 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
86654457 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
86654497 CCGGA
1 CCGGA
86654502 ATTATCATCC
Statistics
Matches: 192, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 189 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86662395 original size:40 final size:40
Alignment explanation
Indices: 86662348--86662459 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
86662338 CGGGCTTTAA
*
86662348 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
86662388 CCGGATATAGTAGTTCACACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
86662428 CCGGATATAGTAACTCGCACAAATGCCTTCGG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGG
86662460 CACAAATGCC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.02
40 61 0.98
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86662464 original size:15 final size:15
Alignment explanation
Indices: 86662444--86662474 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86662434 ATAGTAACTC
86662444 GCACAAATGCCTTCG
1 GCACAAATGCCTTCG
86662459 GCACAAATGCCTTCG
1 GCACAAATGCCTTCG
86662474 G
1 G
86662475 GACTTAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.19
Consensus pattern (15 bp):
GCACAAATGCCTTCG
Found at i:86662489 original size:55 final size:55
Alignment explanation
Indices: 86662405--86662514 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
86662395 TAGTAGTTCA
*
86662405 CACAAATGTCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
86662460 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
86662515 GACTTAGCCC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (55 bp):
CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
Found at i:86662553 original size:39 final size:40
Alignment explanation
Indices: 86662459--86662609 Score: 254
Period size: 40 Copynumber: 3.8 Consensus size: 40
86662449 AATGCCTTCG
* *
86662459 GCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTA
86662499 GCACAAATGCCTTCGGGACTTAGCCCGGAATTA-TCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTA
86662538 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTA
86662578 GCACAAATGCCTTCGGGACTTAGCCC-GAATTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTA
86662610 TCATCCGAAT
Statistics
Matches: 107, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
39 43 0.40
40 62 0.58
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTA
Found at i:86662590 original size:79 final size:78
Alignment explanation
Indices: 86662459--86662612 Score: 265
Period size: 79 Copynumber: 2.0 Consensus size: 78
86662449 AATGCCTTCG
*
86662459 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCC
86662524 CGGAATTATCACTA
66 C-GAATTATCACTA
*
86662538 GCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGC
86662602 CCGAATTATCA
65 CCGAATTATCA
86662613 TCCGAATATT
Statistics
Matches: 72, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
78 10 0.14
79 62 0.86
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCC
CGAATTATCACTA
Found at i:86669153 original size:13 final size:14
Alignment explanation
Indices: 86669135--86669163 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86669125 TTTATGTGTT
86669135 TTTAAAGGTT-ATA
1 TTTAAAGGTTAATA
86669148 TTTAAAGGTTAATA
1 TTTAAAGGTTAATA
86669162 TT
1 TT
86669164 GGTAATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (14 bp):
TTTAAAGGTTAATA
Found at i:86670130 original size:43 final size:43
Alignment explanation
Indices: 86670042--86670143 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
86670032 ATAAGATGTC
**
86670042 ATTATGTGTAAGACCATGTCTGAGACATTGTTATCATTACATG
1 ATTATGTGTAAGACCATGTCTGAGACATTGGAATCATTACATG
* * * * **
86670085 ATTACGTGTAAGACCATGTTTGGGACATTGGAATCGTTATTTG
1 ATTATGTGTAAGACCATGTCTGAGACATTGGAATCATTACATG
86670128 ATT-TGTGTAAGACCAT
1 ATTATGTGTAAGACCAT
86670144 AGCTGGGCTA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 12 0.24
43 38 0.76
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (43 bp):
ATTATGTGTAAGACCATGTCTGAGACATTGGAATCATTACATG
Found at i:86675076 original size:17 final size:17
Alignment explanation
Indices: 86675051--86675092 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
86675041 AAGTAAACAA
86675051 AGTAAGCTA-TAAAGCTT
1 AGTAAGCTATTAAA-CTT
*
86675068 AGTATGCTATTAAACTT
1 AGTAAGCTATTAAACTT
86675085 AGTAAGCT
1 AGTAAGCT
86675093 CGTATGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (17 bp):
AGTAAGCTATTAAACTT
Found at i:86688052 original size:27 final size:27
Alignment explanation
Indices: 86688003--86688091 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
86687993 CCGATTTGTA
* * * * *
86688003 AAAATTACCGAAATACTCTTGTAGTGT
1 AAAATGACCGTAATACCCCTGTAGGGT
* *
86688030 AAAATGATCGTAATGCCCCTGTAGGGT
1 AAAATGACCGTAATACCCCTGTAGGGT
* *
86688057 AAAATGACCGTAATACCTCTGTATGGT
1 AAAATGACCGTAATACCCCTGTAGGGT
*
86688084 AGAATGAC
1 AAAATGAC
86688092 GATTATGCTC
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
AAAATGACCGTAATACCCCTGTAGGGT
Found at i:86690688 original size:22 final size:22
Alignment explanation
Indices: 86690646--86690689 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
86690636 AATTATTTAC
* *
86690646 GACTAAAGTATAGCATTCATAT
1 GACTAAAGAATAGCATGCATAT
86690668 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCATGCATAT
86690690 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCATGCATAT
Found at i:86690990 original size:40 final size:40
Alignment explanation
Indices: 86690916--86691177 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
86690906 AACCCAAGTA
* * *
86690916 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
*
86690955 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
* * *
86690995 CCTTCGGGACTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
86691035 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
86691075 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
*
86691115 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCATAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
86691155 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
86691178 CATTCGAATA
Statistics
Matches: 209, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 12 0.06
40 194 0.93
41 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:86699316 original size:22 final size:22
Alignment explanation
Indices: 86699274--86699317 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
86699264 AATTATTTAC
* *
86699274 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
86699296 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
86699318 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:86699600 original size:40 final size:41
Alignment explanation
Indices: 86699541--86699760 Score: 339
Period size: 40 Copynumber: 5.6 Consensus size: 41
86699531 AACCCAAGTA
* * *
86699541 CCTTC-GGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAAAG
*
86699579 CCTTCGGGTCTTAGCCCGGATATAGTCAA-TAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAAAG
*
86699619 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAAAG
86699659 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCAC-AAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAAAG
86699698 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAAAG
86699738 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
86699761 CATTCGAATA
Statistics
Matches: 168, Mismatches: 7, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
38 6 0.04
39 43 0.26
40 115 0.68
41 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAAAG
Found at i:86699741 original size:79 final size:80
Alignment explanation
Indices: 86699541--86699760 Score: 367
Period size: 79 Copynumber: 2.8 Consensus size: 80
86699531 AACCCAAGTA
* * *
86699541 CCTTC-GGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
86699603 GTCAATAGCACAAAAG
65 GTCAATAGCACAAAAG
86699619 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
86699684 TCAATAGCAC-AAAG
66 TCAATAGCACAAAAG
*
86699698 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
86699761 CATTCGAATA
Statistics
Matches: 135, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
78 5 0.04
79 73 0.54
80 56 0.41
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:86701757 original size:29 final size:27
Alignment explanation
Indices: 86701723--86701825 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
86701713 TACTCAATCA
*
86701723 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
86701752 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
86701781 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
86701810 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86701826 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:86704475 original size:58 final size:56
Alignment explanation
Indices: 86704363--86704482 Score: 143
Period size: 58 Copynumber: 2.1 Consensus size: 56
86704353 CGGATCTCTN
* * **
86704363 CGCACACATAGTGCTTATACTCAATCACGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACATAGTGCATATACTCAAACACGCACACTTAGTGCCATGACATTCAAGCC
* * *
86704419 CGCACACATAGTGCCATATAGTCCAAACTCGCACACTTAGTGCCAT-ACATTACAAGCT
1 CGCACACATAGTG-CATATACT-CAAACACGCACACTTAGTGCCATGACATT-CAAGCC
86704477 CGCACA
1 CGCACA
86704483 TTCAGTGCCA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
56 13 0.24
57 9 0.17
58 32 0.59
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.23
Consensus pattern (56 bp):
CGCACACATAGTGCATATACTCAAACACGCACACTTAGTGCCATGACATTCAAGCC
Found at i:86704478 original size:29 final size:28
Alignment explanation
Indices: 86704390--86704492 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 28
86704380 TACTCAATCA
** *
86704390 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-ACATTCAAGCT
* * * *
86704419 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
86704448 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
86704477 CGCACA-TTCAGTGCCA
1 CGCACACTT-AGTGCCA
86704493 ATCTCGTCCC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 4 0.07
29 57 0.93
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:86709256 original size:27 final size:26
Alignment explanation
Indices: 86709220--86709276 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
86709210 GAAATACGAT
* * * *
86709220 TGTAGTGTAAAGTGACTGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAAT-ACCC
86709247 TGTAGGGTAAAATGACCGTAATACCC
1 TGTAGGGTAAAATGACCGTAATACCC
86709273 TGTA
1 TGTA
86709277 TGATAGAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
TGTAGGGTAAAATGACCGTAATACCC
Found at i:86711020 original size:48 final size:48
Alignment explanation
Indices: 86710697--86711009 Score: 443
Period size: 48 Copynumber: 6.5 Consensus size: 48
86710687 TAGAGTACCA
* * * *
86710697 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATTCACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CATATATCATCGCCG
* * *
86710745 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTGACG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
86710793 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * *
86710841 ATACCATGTCCCAAACATGGTCTTACACTGGTACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
86710889 ATGCCATGTCCCAGACATGGTCTTGCACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
86710937 ATGCCATGTCCCAAACATGGTCTTACA-TAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GGCACATATATCATCGCCG
*
86710985 ATCCCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
86711010 TATAGGCACA
Statistics
Matches: 239, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.00
48 235 0.98
49 1 0.00
50 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:86715878 original size:31 final size:32
Alignment explanation
Indices: 86715835--86715920 Score: 129
Period size: 31 Copynumber: 2.7 Consensus size: 32
86715825 TCAATATGCT
*
86715835 AATTTTTTTTAATCAATTCTAATTTCTTCAAG
1 AATTTTTATTAATCAATTCTAATTTCTTCAAG
*
86715867 -GTTTTTATTAATCAATTCTAATTTCTTCAAG
1 AATTTTTATTAATCAATTCTAATTTCTTCAAG
*
86715898 AATTTATATTAATCAATCTCTAA
1 AATTTTTATTAATCAAT-TCTAA
86715921 AAATTATAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
31 29 0.60
32 14 0.29
33 5 0.10
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (32 bp):
AATTTTTATTAATCAATTCTAATTTCTTCAAG
Found at i:86717938 original size:46 final size:45
Alignment explanation
Indices: 86717851--86718024 Score: 143
Period size: 46 Copynumber: 3.8 Consensus size: 45
86717841 ACATCTCGCA
* * *
86717851 GCCGATGCATGTCCCAGGCATGTTTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTCGAG
* * *
86717897 GCCGATGCATGTCCCAGATATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCGAG
** * * * * *
86717943 GTTGATGCAATGTCCAAGACATGATCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGC-ATGTCCCAGACATG-TCTTACACTAGC-CTCGT-CTCGAG
* * *
86717991 GTCGATGCATGTTCTAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
86718025 TCACAACAAG
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 55 0.53
47 25 0.24
48 22 0.21
49 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCGAG
Found at i:86719744 original size:16 final size:17
Alignment explanation
Indices: 86719704--86719744 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
86719694 TTTATTTTTA
*
86719704 TATAAAATAATTTATTT
1 TATAAAATAATTCATTT
*
86719721 TATAAAATAATTCCTTT
1 TATAAAATAATTCATTT
86719738 T-TAAAAT
1 TATAAAAT
86719745 TTTGATGAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAAAATAATTCATTT
Found at i:86726070 original size:93 final size:93
Alignment explanation
Indices: 86725958--86726128 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
86725948 GCCCATAAGT
* *
86725958 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86726023 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
86726051 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86726116 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86726129 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86726144 original size:46 final size:46
Alignment explanation
Indices: 86725950--86726130 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
86725940 TGTAACCCGC
* * *
86725950 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
86725996 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
86726046 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
86726089 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
86726131 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:86728532 original size:30 final size:30
Alignment explanation
Indices: 86728488--86728576 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
86728478 CAAAGATAAC
86728488 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
86728517 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
86728547 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
86728577 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:86728536 original size:15 final size:15
Alignment explanation
Indices: 86728488--86728567 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
86728478 CAAAGATAAC
*
86728488 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
86728502 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
86728517 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
86728532 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
86728547 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
86728562 AAGAAA
1 AAGAAA
86728568 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:86728576 original size:15 final size:15
Alignment explanation
Indices: 86728499--86728576 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
86728489 AGAAAACCGA
86728499 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
86728514 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
86728528 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
86728543 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86728559 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86728574 ATA
1 ATA
86728577 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86731639 original size:93 final size:93
Alignment explanation
Indices: 86731527--86731698 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86731517 GCCCATAAGT
* *
86731527 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86731592 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
86731620 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86731685 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
86731699 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86731694 original size:46 final size:46
Alignment explanation
Indices: 86731519--86731694 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86731509 TGTAACCCGC
* * *
86731519 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
86731565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
86731615 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
86731658 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86731695 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:86734007 original size:30 final size:30
Alignment explanation
Indices: 86733973--86734032 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86733963 TTCCCGAGCC
*
86733973 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
86734003 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
86734033 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:86737649 original size:47 final size:47
Alignment explanation
Indices: 86737554--86737775 Score: 229
Period size: 47 Copynumber: 4.8 Consensus size: 47
86737544 ATTTGTTTGT
* * *** *
86737554 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GATGA
*
86737600 GAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGATGA
* * **
86737647 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCTGCTACAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGATGA
* * * * * *
86737693 CAGTCAGTGTAAAACCATGTCTCGGACATGGCATCGACTTGAGATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATGA
86737740 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
86737776 ACACCTTACC
Statistics
Matches: 143, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 47 0.33
47 87 0.61
48 8 0.06
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATGA
Found at i:86737735 original size:93 final size:93
Alignment explanation
Indices: 86737554--86737775 Score: 293
Period size: 93 Copynumber: 2.4 Consensus size: 93
86737544 ATTTGTTTGT
* ** * *
86737554 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGACAGCCAGTGTAAAACCATG
* * *
86737619 TTGGGACATGGCATCGGCATTGAGACGA
66 TTCGGACATGGCATCGACATTGAGACAA
* * *
86737647 GAGCTAGTGTAAGACATGTCTGGGACATGCATCTGCTACAAGATGACAGTCAGTGTAAAACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGACAGCCAGTGTAAAACCATG
*
86737712 TCTCGGACATGGCATCGAC-TTGAGATAA
66 T-TCGGACATGGCATCGACATTGAGACAA
*
86737740 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
86737776 ACACCTTACC
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
93 78 0.70
94 29 0.26
95 5 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGACAGCCAGTGTAAAACCATG
TTCGGACATGGCATCGACATTGAGACAA
Found at i:86743537 original size:8 final size:8
Alignment explanation
Indices: 86743525--86743557 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
86743515 ACTTACTCAC
86743525 TTACTTAA
1 TTACTTAA
*
86743533 ATACTTAA
1 TTACTTAA
86743541 TTACTTAA
1 TTACTTAA
86743549 TTACTTAA
1 TTACTTAA
86743557 T
1 T
86743558 CAAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (8 bp):
TTACTTAA
Found at i:86743938 original size:55 final size:53
Alignment explanation
Indices: 86743795--86744002 Score: 231
Period size: 55 Copynumber: 3.8 Consensus size: 53
86743785 ATCCTTTTGA
* *
86743795 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
* * * *
86743848 AACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
86743902 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
86743956 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
86744003 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 20, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 70 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:86743939 original size:108 final size:110
Alignment explanation
Indices: 86743795--86743995 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
86743785 ATCCTTTTGA
* * *
86743795 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACTAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
86743858 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
86743903 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
86743968 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
86743996 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 6 0.07
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:86746621 original size:20 final size:20
Alignment explanation
Indices: 86746596--86746644 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
86746586 CATGAAAAAT
86746596 TTTGTGAGCTAATTTTAACG
1 TTTGTGAGCTAATTTTAACG
86746616 TTTGTGAGCTAATTTTAACG
1 TTTGTGAGCTAATTTTAACG
86746636 TTTGTGAGC
1 TTTGTGAGC
86746645 CCAATAGCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.10, G:0.22, T:0.45
Consensus pattern (20 bp):
TTTGTGAGCTAATTTTAACG
Found at i:86747770 original size:46 final size:47
Alignment explanation
Indices: 86747718--86747886 Score: 154
Period size: 47 Copynumber: 3.6 Consensus size: 47
86747708 TGTGAGCTAT
86747718 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCCAG
* * * *
86747764 TGTAAGACCATGTCTAGGACATGGCATTGG--CATTGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCCAG
* * * * *
86747812 TGTAAGA-TATGTCTGGGACAT-GCATCAGCTACGA-GATGACAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-AC-ATTATGAGAGCCAG
86747858 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
86747887 ACACCTTACC
Statistics
Matches: 97, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
45 4 0.04
46 26 0.27
47 38 0.39
48 27 0.28
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCCAG
Done.