Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 278 of 438
Found at i:86747872 original size:94 final size:94
Alignment explanation
Indices: 86747711--86747884 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 94
86747701 ATTTGTTTGT
* * * *
86747711 GAGCTATTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGACAGCCAGTGTAAGACCATG
86747776 TCTAGGACATGGCATTGGCATTGAGACGA
66 TCTAGGACATGGCATTGGCATTGAGACGA
* * *
86747805 GAGCTAGTGTAAGATATGTCTGGGACATGCATCAGCTACGA-GATGACAGTCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGACAGCCAGTGTAAGACCAT
*
86747869 GTCTGGGACATGGCAT
65 GTCTAGGACATGGCAT
86747885 CGACACCTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 70 0.99
95 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGACAGCCAGTGTAAGACCATG
TCTAGGACATGGCATTGGCATTGAGACGA
Found at i:86756353 original size:24 final size:24
Alignment explanation
Indices: 86756321--86756461 Score: 185
Period size: 24 Copynumber: 5.9 Consensus size: 24
86756311 TCGGTCAAGG
* *
86756321 AAATTCGCACACATAGTGCCATGC
1 AAATCCGCACACATAGTGCCATTC
* *
86756345 TAACCCGCACACATAGTGCC-TTGC
1 AAATCCGCACACATAGTGCCATT-C
* * *
86756369 TAATCCACACACGTAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
* *
86756393 AAATCTGAACACATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
86756417 AAATCCGCACACATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
86756441 AAATCCGCACACATAGTGCCA
1 AAATCCGCACACATAGTGCCA
86756462 ATGTCATTTC
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
23 1 0.01
24 98 0.97
25 2 0.02
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.21
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATTC
Found at i:86757832 original size:18 final size:17
Alignment explanation
Indices: 86757786--86757826 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
86757776 ACTTAATATT
* *
86757786 TTATAACTTATTTTATA
1 TTATAACATATTTTAAA
86757803 TTATAACATATTTTAAA
1 TTATAACATATTTTAAA
86757820 TATATAA
1 T-TATAA
86757827 TCTATTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATAACATATTTTAAA
Found at i:86762198 original size:14 final size:14
Alignment explanation
Indices: 86762179--86762213 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
86762169 CCTCCTTAAA
86762179 GAAATTTCAGCCTC
1 GAAATTTCAGCCTC
86762193 GAAATTTCAGCCTC
1 GAAATTTCAGCCTC
86762207 GAAATTT
1 GAAATTT
86762214 ACCTGATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (14 bp):
GAAATTTCAGCCTC
Found at i:86773233 original size:30 final size:30
Alignment explanation
Indices: 86773197--86773297 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
86773187 GACAAGATTG
* * *
86773197 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
86773227 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
86773255 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
86773284 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86773298 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:86773309 original size:29 final size:28
Alignment explanation
Indices: 86773226--86773301 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
86773216 AAAATTGTAC
* *
86773226 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
86773254 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
86773283 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
86773302 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:86775624 original size:36 final size:36
Alignment explanation
Indices: 86775558--86775666 Score: 146
Period size: 36 Copynumber: 3.0 Consensus size: 36
86775548 AGCTCAGACG
* *
86775558 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGAAA
1 AAATCTCCACACGTAG-TCTCGGGTCTTACCCGGAAA
* *
86775595 AAATCTCCACACGTAGTCTCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCTCGGGTCTTACCCGGAAA
* *
86775631 TAATCTCCGCACGTAGTCATCGGGTCTTACCCGGAA
1 AAATCTCCACACGTAGTC-TCGGGTCTTACCCGGAA
86775667 TATATTTCCA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
36 33 0.52
37 30 0.48
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (36 bp):
AAATCTCCACACGTAGTCTCGGGTCTTACCCGGAAA
Found at i:86775986 original size:48 final size:48
Alignment explanation
Indices: 86775812--86775995 Score: 282
Period size: 47 Copynumber: 3.8 Consensus size: 48
86775802 GCACATCGCC
*
86775812 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
86775862 TATATATTTCACATT-GACCATTCCGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
86775910 TACA-ATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
86775957 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
86775996 TGCATGTTCA
Statistics
Matches: 122, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 42 0.34
48 38 0.31
49 1 0.01
50 41 0.34
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:86776000 original size:97 final size:97
Alignment explanation
Indices: 86775812--86775994 Score: 291
Period size: 97 Copynumber: 1.9 Consensus size: 97
86775802 GCACATCGCC
* *
86775812 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCA-ATACATATTTCACATT
86775877 GACCATTCCGCTTTACCACATATGCATATCTCA
65 GACCATTCCGCTTTACCACATATGCATATCTCA
*
86775910 TACA-ATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
*
86775972 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCCGCTTTACCACATAT
86775995 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
94 1 0.01
95 35 0.44
97 40 0.50
98 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCCGCTTTACCACATATGCATATCTCA
Found at i:86776024 original size:95 final size:94
Alignment explanation
Indices: 86775828--86776122 Score: 309
Period size: 94 Copynumber: 3.1 Consensus size: 94
86775818 TTTCACACTA
* *
86775828 GCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCCGCTTTAC
1 GCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTG-CCATTCGGCTTTAC
* *
86775893 CAC--ATATGCATATCTCATA--CAATTTCACATTA
63 CACATATATGCATGT-TCATATTC-A--TCACATTG
*
86775925 GCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
1 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT-GCCATTCGGCTTTACCA
*
86775990 CATATATGCATGTTCATATTCACCACATTG
65 CATATATGCATGTTCATATTCATCACATTG
* * * * *
86776020 GCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATTCGGCCTTA
1 GCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATT-GCCATTCGGCTTTA
* *
86776081 TCACATATATGCATGTTCACATTCATCACATTG
62 CCACATATATGCATGTTCATATTCATCACATTG
86776114 GCCATTCGG
1 GCCATTCGG
86776123 TCTTATCTCA
Statistics
Matches: 174, Mismatches: 16, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
93 1 0.01
94 63 0.36
95 49 0.28
96 10 0.06
97 50 0.29
98 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (94 bp):
GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTGCCATTCGGCTTTACCAC
ATATATGCATGTTCATATTCATCACATTG
Found at i:86776028 original size:47 final size:47
Alignment explanation
Indices: 86775965--86776158 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
86775955 CATACATATT
* * * *
86775965 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
86776012 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86776059 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
86776106 TCACATTGGCCATTCGGTCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86776153 TCACAT
1 TCACAT
86776159 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:86781701 original size:18 final size:18
Alignment explanation
Indices: 86781678--86781714 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86781668 CTATTTTTTG
86781678 AGCCTTTGGTCACCCTCT
1 AGCCTTTGGTCACCCTCT
86781696 AGCCTTTGGTCACCCTCT
1 AGCCTTTGGTCACCCTCT
86781714 A
1 A
86781715 TCATCCATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.14, C:0.38, G:0.16, T:0.32
Consensus pattern (18 bp):
AGCCTTTGGTCACCCTCT
Found at i:86797381 original size:40 final size:41
Alignment explanation
Indices: 86797295--86797391 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
86797285 CGACTTTGTT
*
86797295 TGGCACTTAGTGTGC-AATTCAAGATAGCTTCGGCTATTTA
1 TGGCACTTAGTGTGCGAATTCAAGATAGCTTCGGCTATATA
** ** *
86797335 AAGCACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTATATG
1 TGGCACTTAGTGTGCGAATTCAAGATAGCTTCGGCTATATA
*
86797375 TGGCACTAAGTGTGCGA
1 TGGCACTTAGTGTGCGA
86797392 TACTGAGATG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 42 0.89
41 5 0.11
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (41 bp):
TGGCACTTAGTGTGCGAATTCAAGATAGCTTCGGCTATATA
Found at i:86801801 original size:22 final size:21
Alignment explanation
Indices: 86801761--86801801 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
86801751 CACTTGACAT
*
86801761 AGGGGCACACGCCCATGTGGG
1 AGGGGCACACACCCATGTGGG
*
86801782 AGGGGCAACACACCCCTGTG
1 AGGGGC-ACACACCCATGTG
86801802 AGCATTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.32, G:0.37, T:0.10
Consensus pattern (21 bp):
AGGGGCACACACCCATGTGGG
Found at i:86802459 original size:35 final size:35
Alignment explanation
Indices: 86802408--86802486 Score: 131
Period size: 35 Copynumber: 2.3 Consensus size: 35
86802398 TTTATAAATT
*
86802408 CAAAGTGAATGTTAGCCATCACTAAAGGCTTAATA
1 CAAAGTGAATGCTAGCCATCACTAAAGGCTTAATA
*
86802443 CAAAGTGAATGCTAGCCATCATTAAAGGCTTAATA
1 CAAAGTGAATGCTAGCCATCACTAAAGGCTTAATA
*
86802478 CAAATTGAA
1 CAAAGTGAA
86802487 GGGTTTCCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (35 bp):
CAAAGTGAATGCTAGCCATCACTAAAGGCTTAATA
Found at i:86805337 original size:25 final size:25
Alignment explanation
Indices: 86805278--86805342 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
86805268 CTTATGAGAT
*
86805278 ATAATCGGTAAGCTCATACGAGCTGT
1 ATAA-CGGTAAGCTCATACGAGCTGA
*
86805304 GTAACGGTAAGCTCATACGAGCTGA
1 ATAACGGTAAGCTCATACGAGCTGA
**
86805329 ATATTGGTAAGCTC
1 ATAACGGTAAGCTC
86805343 CCTCGAGTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 31 0.91
26 3 0.09
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (25 bp):
ATAACGGTAAGCTCATACGAGCTGA
Found at i:86805623 original size:16 final size:17
Alignment explanation
Indices: 86805602--86805633 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
86805592 ATTTAGGGGC
86805602 ATTTTGTT-AATTTTCT
1 ATTTTGTTAAATTTTCT
86805618 ATTTTGTTAAATTTTC
1 ATTTTGTTAAATTTTC
86805634 ACCCGATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.22, C:0.06, G:0.06, T:0.66
Consensus pattern (17 bp):
ATTTTGTTAAATTTTCT
Found at i:86810562 original size:29 final size:28
Alignment explanation
Indices: 86810507--86810562 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
86810497 AAACGGGCTA
*
86810507 GGACACGGGTGTGTCGTGGCCGTGTGAG
1 GGACACGGGTGTGTCGTGGCCATGTGAG
*
86810535 GGACACGGGAATGTGTC-TGGCTATGTGA
1 GGACACGGG--TGTGTCGTGGCCATGTGA
86810563 AGAGCCTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 9 0.38
29 9 0.38
30 6 0.25
ACGTcount: A:0.16, C:0.16, G:0.45, T:0.23
Consensus pattern (28 bp):
GGACACGGGTGTGTCGTGGCCATGTGAG
Found at i:86816635 original size:21 final size:21
Alignment explanation
Indices: 86816609--86816655 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
86816599 GCTAAGGCTT
86816609 ATGCTATACGCGCACGCGAGG
1 ATGCTATACGCGCACGCGAGG
86816630 ATGCTATACGCGCACGCGAGG
1 ATGCTATACGCGCACGCGAGG
86816651 ATGCT
1 ATGCT
86816656 TCCTCGCCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.32, T:0.17
Consensus pattern (21 bp):
ATGCTATACGCGCACGCGAGG
Found at i:86821863 original size:40 final size:40
Alignment explanation
Indices: 86821722--86821905 Score: 137
Period size: 40 Copynumber: 4.6 Consensus size: 40
86821712 TCGAATGATG
* * *
86821722 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTCTGC-AAGTTACTAAA
* * * * *
86821762 TCCGGACTAGGAT-CCGAAGGCA-TTCGTGCGAGATAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTC-TGCAAGTTACTAAA
*
86821802 TCCGGGCTAAG-CCCGAGGGCATTTCTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACTAAA
* * ** *
86821841 CCCGGGTTAAGTCCCGAAGGCA-TTCGTGTGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTC-TGCAAGTTACTA-AA
**
86821882 -CCGGGCTTTGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT
86821906 GAGCGAGTCG
Statistics
Matches: 112, Mismatches: 23, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
39 31 0.28
40 73 0.65
41 8 0.07
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACTAAA
Found at i:86829987 original size:32 final size:32
Alignment explanation
Indices: 86829951--86830018 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
86829941 TACCCCTAAA
**
86829951 AGAAAATTTTGGCCCCAAAATTTTACCTGATC
1 AGAAAATTTCAGCCCCAAAATTTTACCTGATC
*
86829983 AGAAAATTTCAGCCCCAAAATTTTACCTGATT
1 AGAAAATTTCAGCCCCAAAATTTTACCTGATC
86830015 AGAA
1 AGAA
86830019 CAAATAGACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (32 bp):
AGAAAATTTCAGCCCCAAAATTTTACCTGATC
Found at i:86843048 original size:49 final size:49
Alignment explanation
Indices: 86842990--86843323 Score: 541
Period size: 49 Copynumber: 6.9 Consensus size: 49
86842980 GTATGAGATG
* *
86842990 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
86843039 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
86843088 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
86843137 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
86843184 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* * *
86843231 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
86843280 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
86843324 TATATGTGTG
Statistics
Matches: 273, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
47 90 0.33
49 183 0.67
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
Found at i:86843219 original size:96 final size:95
Alignment explanation
Indices: 86842988--86843323 Score: 539
Period size: 96 Copynumber: 3.5 Consensus size: 95
86842978 ATGTATGAGA
* *
86842988 TGTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATA-ATGTGATAA
*
86843053 GGCCTAATGGCCAATGTGATGAACGTGAAAG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAG
*
86843084 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGAGTATATACATGTGAT
1 TGTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATA-ATGTGAT
86843149 AAGGCCTAATGGCCAATGTGATGAATGTGAAAG
63 AAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
86843182 AGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT-ATGTGATAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATAATGTGATAAG
* *
86843246 GCCTAATGGCCGATGTGATGAATGTGAAGG
66 GCCTAATGGCCAATGTGATGAATGTGAAAG
*
86843276 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
86843324 TATATGTGTG
Statistics
Matches: 225, Mismatches: 11, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 39 0.17
96 96 0.43
98 90 0.40
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (95 bp):
TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATAATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:86843372 original size:48 final size:48
Alignment explanation
Indices: 86843315--86843466 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
86843305 CGATGTGATG
*
86843315 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
86843363 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
86843411 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
86843459 AATGTGAA
1 AATGTGAA
86843467 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:86843561 original size:37 final size:37
Alignment explanation
Indices: 86843511--86843596 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
86843501 GGAAATATAT
*
86843511 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
86843548 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
86843585 TCCGGGTAAGAC
1 TCCGGGTAAGAC
86843597 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:86849680 original size:27 final size:26
Alignment explanation
Indices: 86849632--86849683 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
86849622 GCGACGCTGC
*
86849632 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
86849658 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
86849684 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86855784 original size:71 final size:67
Alignment explanation
Indices: 86855705--86855846 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
86855695 TCACCAAATA
* * *
86855705 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACAAAGCCACCAGAACAG----ATATATGTGGCAAAGCCACCAGATTGCAGCGA
86855770 CGCTGC
62 CGCTGC
* * * *
86855776 CAGATATTGTGACAAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGACGCT
86855841 GC
66 GC
86855843 CAGA
1 CAGA
86855847 ACTCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGACGCT
GC
Found at i:86857380 original size:48 final size:48
Alignment explanation
Indices: 86857322--86857601 Score: 506
Period size: 48 Copynumber: 5.8 Consensus size: 48
86857312 ATATACACAC
*
86857322 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
86857370 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
86857418 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
86857466 ATCTCATACATATTTCACTTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
86857514 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
86857562 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
86857602 GCACATATAT
Statistics
Matches: 223, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 223 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:86861075 original size:40 final size:40
Alignment explanation
Indices: 86861031--86861389 Score: 565
Period size: 40 Copynumber: 9.0 Consensus size: 40
86861021 GAATGCACAT
* * *
86861031 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
86861071 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
86861111 CACCAGAACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
86861151 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
86861191 CACCAGCACGAATGCTCTTCAGGACTTAGCCCGGCTATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
86861231 CATCAGTACGAATGCTCTTTGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
86861271 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
86861311 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
86861351 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
86861390 TAACTCTAAA
Statistics
Matches: 295, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 295 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:86862723 original size:37 final size:37
Alignment explanation
Indices: 86862667--86862772 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
86862657 GCTCGAATAG
*
86862667 TCTCCACACGTAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
86862704 TCTTCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
86862741 TCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
86862773 ATATATTTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:86862975 original size:48 final size:48
Alignment explanation
Indices: 86862912--86863383 Score: 809
Period size: 48 Copynumber: 9.8 Consensus size: 48
86862902 ATATACACAC
* *
86862912 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86862960 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86863008 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86863056 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
86863104 ATCTCATACATATTTCACTTTAGCCATTCGACTTTACCATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86863152 ATCTCATACATATTTCACTTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86863200 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86863248 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86863296 ATCTCATACATATTTCACATTAACCATTCGGCTTTACCAGATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86863344 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
86863384 GCACATATAT
Statistics
Matches: 404, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 404 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:86870277 original size:14 final size:13
Alignment explanation
Indices: 86870245--86870277 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
86870235 TCTCAAAAGT
86870245 ACTTTTTCACTGC
1 ACTTTTTCACTGC
86870258 ACTTTTTCACTGC
1 ACTTTTTCACTGC
86870271 ACTTTTT
1 ACTTTTT
86870278 AAAAATACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.27, G:0.06, T:0.52
Consensus pattern (13 bp):
ACTTTTTCACTGC
Found at i:86870880 original size:22 final size:21
Alignment explanation
Indices: 86870834--86870882 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
86870824 ATTCTTCTTC
*
86870834 ATTTTTCTCTCAACTCCACAC
1 ATTTTTCTCTCAACTCCACAA
*
86870855 ATTTTTCTCTCCAATTCC-CATA
1 ATTTTTCTCT-CAACTCCACA-A
86870877 ATTTTT
1 ATTTTT
86870883 TTAGCCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTTTCTCTCAACTCCACAA
Found at i:86871220 original size:42 final size:41
Alignment explanation
Indices: 86871138--86871221 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
86871128 TAAAATGTGT
****
86871138 GTTAATAATTATTTATTGTTCATAAAAATTTTTTGAAGAAG
1 GTTAATAATTATTTATTGTTCATAAAAAAAAATTGAAGAAG
86871179 GTTAATAATTATTTATTGTTCATGAAAAAAAAATTGAAGAAG
1 GTTAATAATTATTTATTGTTCAT-AAAAAAAAATTGAAGAAG
86871221 G
1 G
86871222 AAAGGTGGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
41 23 0.61
42 15 0.39
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.40
Consensus pattern (41 bp):
GTTAATAATTATTTATTGTTCATAAAAAAAAATTGAAGAAG
Found at i:86873010 original size:30 final size:30
Alignment explanation
Indices: 86872954--86873012 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
86872944 TCTGAGCCTT
*
86872954 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* *
86872984 GGGGCAAAAA-TGTAAATTTGCCAAAGTTT
1 GGGG-AAAAAGTGTAAATATGCAAAAGTTT
86873013 GAGTGAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.27
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:86883842 original size:27 final size:26
Alignment explanation
Indices: 86883794--86883868 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
86883784 GCGAGGCTGC
* *
86883794 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGA-A
* *
86883821 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGGCGAAGCCACCAGAA
*
86883847 CATATATATGTGGCGAAGCCAC
1 CAGATAT-TGTGGCGAAGCCAC
86883869 TAGATTGCAG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.17
27 33 0.82
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCGAAGCCACCAGAA
Found at i:86887253 original size:23 final size:24
Alignment explanation
Indices: 86887176--86887320 Score: 197
Period size: 24 Copynumber: 6.0 Consensus size: 24
86887166 GCTTTATCAT
*
86887176 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
86887201 ATAACTGGGGCA-AAGCCCTTTTTTTA
1 ATAACTGGGGCATAAGCCC---TTTTA
86887227 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
86887250 ATAACTGGGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86887274 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
86887298 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86887321 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 4, Indels: 13
0.87 0.03 0.10
Matches are distributed among these distances:
23 23 0.21
24 56 0.51
25 8 0.07
26 17 0.15
27 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86887395 original size:20 final size:20
Alignment explanation
Indices: 86887370--86887430 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
86887360 TTATGACTAC
86887370 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
86887390 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
86887410 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
86887430 A
1 A
86887431 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86887505 original size:25 final size:25
Alignment explanation
Indices: 86887473--86887520 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86887463 ATACATAAAC
* * *
86887473 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86887498 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86887521 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86887821 original size:21 final size:21
Alignment explanation
Indices: 86887797--86887848 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
86887787 AAGCCCAATG
86887797 GGCCCCACTTTGGCCCCTCGA
1 GGCCCCACTTTGGCCCCTCGA
86887818 GGCCCCACTTTGGCCCCTCGA
1 GGCCCCACTTTGGCCCCTCGA
*
86887839 GGCCCAACTT
1 GGCCCCACTT
86887849 ACCAAGAACG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.12, C:0.46, G:0.23, T:0.19
Consensus pattern (21 bp):
GGCCCCACTTTGGCCCCTCGA
Found at i:86888811 original size:27 final size:27
Alignment explanation
Indices: 86888780--86889091 Score: 394
Period size: 27 Copynumber: 11.6 Consensus size: 27
86888770 GGGTATTTTA
* * *
86888780 GTAATTTTGTAAATCGGGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
86888807 ATAATTCTGTAAATCAAGGG-AAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86888833 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
86888860 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
86888887 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
86888914 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
86888941 ATAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
86888968 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86888995 GTAATTCTGTAAA-CTGAGGATAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
86889022 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
86889049 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86889076 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
86889092 GGAGTACTTT
Statistics
Matches: 252, Mismatches: 30, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
26 24 0.10
27 227 0.90
28 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:86897542 original size:20 final size:19
Alignment explanation
Indices: 86897519--86897565 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
86897509 TTTCCAATCT
86897519 TTTATTTA-TT-GTT-CTA
1 TTTATTTATTTAGTTACTA
*
86897535 TTTATTTATCTTAGTTATTA
1 TTTATTTAT-TTAGTTACTA
86897555 TTTATTTATTT
1 TTTATTTATTT
86897566 TATTTGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 8 0.31
18 2 0.08
19 5 0.19
20 11 0.42
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.70
Consensus pattern (19 bp):
TTTATTTATTTAGTTACTA
Found at i:86900618 original size:40 final size:40
Alignment explanation
Indices: 86900510--86900759 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
86900500 CGGGATTTAA
* * * * *
86900510 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86900550 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86900590 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86900630 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86900670 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86900710 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86900750 CCGGATATAT
1 CCGGATATAT
86900760 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86907877 original size:40 final size:40
Alignment explanation
Indices: 86907769--86908018 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
86907759 CGGGATTTAA
* * * * *
86907769 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86907809 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86907849 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
86907889 CTGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86907929 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86907969 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86908009 CCGGATATAT
1 CCGGATATAT
86908019 TTCCAATGTT
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 190 0.99
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86919017 original size:9 final size:9
Alignment explanation
Indices: 86919003--86919031 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
86918993 CATAGCAGCC
86919003 CATTTATTT
1 CATTTATTT
86919012 CATTTATTT
1 CATTTATTT
86919021 CATTTATTT
1 CATTTATTT
86919030 CA
1 CA
86919032 CATTTTGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.62
Consensus pattern (9 bp):
CATTTATTT
Found at i:86923487 original size:2 final size:2
Alignment explanation
Indices: 86923480--86923527 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
86923470 AACGCCATAG
*
86923480 AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86923522 AT AT AT
1 AT AT AT
86923528 GAACATGCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86940080 original size:17 final size:16
Alignment explanation
Indices: 86940058--86940097 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 16
86940048 TGTCTTCACT
86940058 TTAGTTTAATTAGTTAA
1 TTAGTTTAATT-GTTAA
86940075 TTAG-TT--TTGTTAA
1 TTAGTTTAATTGTTAA
86940088 TTAGTTTAAT
1 TTAGTTTAAT
86940098 AAACATGCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 7
0.74 0.00 0.26
Matches are distributed among these distances:
13 9 0.45
14 4 0.20
16 3 0.15
17 4 0.20
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (16 bp):
TTAGTTTAATTGTTAA
Found at i:86947901 original size:29 final size:29
Alignment explanation
Indices: 86947867--86947969 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
86947857 TAATCAGCCG
** *
86947867 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
86947896 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
86947925 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
86947954 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86947970 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:86952104 original size:40 final size:40
Alignment explanation
Indices: 86951977--86952106 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
86951967 ATGCTGGAAA
* *
86951977 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
86952017 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86952057 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86952097 TTATATCCGG
1 TTATATCCGG
86952107 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86959317 original size:40 final size:40
Alignment explanation
Indices: 86959190--86959319 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
86959180 ATGCTGGAAA
* *
86959190 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
86959230 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86959270 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86959310 TTATATCCGG
1 TTATATCCGG
86959320 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86965603 original size:29 final size:29
Alignment explanation
Indices: 86965569--86965671 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
86965559 TAATCAGCCG
** *
86965569 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
86965598 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
86965627 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
86965656 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86965672 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:86982636 original size:40 final size:40
Alignment explanation
Indices: 86982591--86982758 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
86982581 CGGAATATAA
86982591 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86982631 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86982671 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86982711 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
86982751 CCGGATAT
1 CCGGATAT
86982759 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86990626 original size:40 final size:40
Alignment explanation
Indices: 86990581--86990748 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
86990571 CGGAATATAA
86990581 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86990621 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86990661 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86990701 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
86990741 CCGGATAT
1 CCGGATAT
86990749 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:87004426 original size:40 final size:40
Alignment explanation
Indices: 87004336--87004555 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
87004326 ACCCAAGTAT
** * *
87004336 CTTCGGGACTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
87004374 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** *
87004414 CTTTAGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
87004454 CTTCGGGTCTTAGCCTGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * *
87004494 CTT-TGGATCTTAGTCCAGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
*
87004534 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
87004556 CATTCGAATA
Statistics
Matches: 147, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
38 12 0.08
39 18 0.12
40 113 0.77
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:87009518 original size:17 final size:17
Alignment explanation
Indices: 87009493--87009527 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
87009483 TTTTGGAAAA
87009493 ACTCGATTGACTAAGAC
1 ACTCGATTGACTAAGAC
*
87009510 ACTCTATTGACTAAGAC
1 ACTCGATTGACTAAGAC
87009527 A
1 A
87009528 ATACCTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (17 bp):
ACTCGATTGACTAAGAC
Found at i:87017647 original size:13 final size:13
Alignment explanation
Indices: 87017625--87017657 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87017615 AAGGGTTTGT
87017625 TTAT-TAAACTAA
1 TTATCTAAACTAA
87017637 TTATCTAAACTAA
1 TTATCTAAACTAA
*
87017650 TTAACTAA
1 TTATCTAA
87017658 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:87019939 original size:24 final size:24
Alignment explanation
Indices: 87019912--87020074 Score: 308
Period size: 24 Copynumber: 6.8 Consensus size: 24
87019902 CTTATTATGT
**
87019912 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
87019936 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87019960 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87019984 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87020008 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87020032 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87020056 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
87020075 TATTTCCAGC
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 137 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:87027871 original size:24 final size:24
Alignment explanation
Indices: 87027844--87027958 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
87027834 CTTATTATGT
**
87027844 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
87027868 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87027892 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87027916 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
87027940 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
87027959 TATTTCCAGC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:87032820 original size:13 final size:13
Alignment explanation
Indices: 87032798--87032830 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87032788 AAGGGTTTGT
87032798 TTAT-TAAACTAA
1 TTATCTAAACTAA
87032810 TTATCTAAACTAA
1 TTATCTAAACTAA
*
87032823 TTAACTAA
1 TTATCTAA
87032831 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:87034673 original size:15 final size:15
Alignment explanation
Indices: 87034632--87034694 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 15
87034622 GAAAACCAGA
*
87034632 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* * *
87034647 ACAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
87034662 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
87034677 GTAAAGAAATCCAGG
1 ATAAAGAAATCCAAG
87034692 ATA
1 ATA
87034695 CCATATCATA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:87038502 original size:47 final size:47
Alignment explanation
Indices: 87038433--87038819 Score: 589
Period size: 47 Copynumber: 8.3 Consensus size: 47
87038423 CCCTTCGGGA
* * *
87038433 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
87038480 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
87038527 CTTATCTCATAAATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
87038574 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
87038621 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
87038668 CCTATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
87038715 CTTAT--CATGTATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
87038760 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
87038807 CTTATCACATATA
1 CTTATCACATATA
87038820 CATATCTTGT
Statistics
Matches: 314, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
45 43 0.14
47 271 0.86
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:87038766 original size:22 final size:22
Alignment explanation
Indices: 87038741--87038816 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
87038731 TTTCACATTC
87038741 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
87038763 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
87038787 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
87038810 ATCACAT
1 ATCACAT
87038817 ATACATATCT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:87056245 original size:35 final size:35
Alignment explanation
Indices: 87056206--87056278 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
87056196 ACACATTCTT
87056206 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
87056241 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
87056276 TAT
1 TAT
87056279 ATATCACATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:87072048 original size:53 final size:54
Alignment explanation
Indices: 87071847--87072053 Score: 193
Period size: 53 Copynumber: 3.8 Consensus size: 54
87071837 ATTAGGGTTT
* * * *
87071847 AAGGATACCAAGTAAGTCCATGCCAA-AGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGA-CATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
87071901 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
** * * * * *
87071956 AAATATCCCATGTAAAACCATGCCAAGGCATGACAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * *
87072009 AAGGATACCACGTAAGACCGTGACAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
87072054 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 42 0.36
54 35 0.30
55 41 0.35
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:87073981 original size:42 final size:42
Alignment explanation
Indices: 87073870--87074025 Score: 132
Period size: 42 Copynumber: 3.7 Consensus size: 42
87073860 TATCATACCA
* * **** * *
87073870 ATGCCATATCCCAGATGTGGTCTTACATGGGATTTCGCATCG
1 ATGCCATATCCTAGATATGGTCTTACACAAAATCTCACATCG
* * * *
87073912 ATGCCAATAGCCTAGCTATTGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACAAAATCTCACATCG
* * * * *
87073955 ATACCATATCCTAGATATGGTCTTACACGAAGTTTCACATTG
1 ATGCCATATCCTAGATATGGTCTTACACAAAATCTCACATCG
* *
87073997 ATGCTATATCCGAGATATGGTCTTACACA
1 ATGCCATATCCTAGATATGGTCTTACACA
87074026 TAGTCTCAAT
Statistics
Matches: 88, Mismatches: 25, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
42 59 0.67
43 29 0.33
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACAAAATCTCACATCG
Found at i:87084988 original size:27 final size:27
Alignment explanation
Indices: 87084955--87085126 Score: 256
Period size: 27 Copynumber: 6.4 Consensus size: 27
87084945 AAGGACATTT
* *
87084955 CAGTCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCTCATGAGGGCAAAA
* *
87084982 CAATCATTTTACCTCATTAGGG-AAAA
1 CAGTCATTTTACCTCATGAGGGCAAAA
*
87085008 TAGTCATTTTACCTCATGAGGGCAAAA
1 CAGTCATTTTACCTCATGAGGGCAAAA
*
87085035 CAGTCATTTTACCTCATGAGAGCAAAA
1 CAGTCATTTTACCTCATGAGGGCAAAA
* *
87085062 CAATCATTTTACCTTATGAGGGCAAAA
1 CAGTCATTTTACCTCATGAGGGCAAAA
87085089 CAGTCATTTTACCTCATGAGGGCAAAA
1 CAGTCATTTTACCTCATGAGGGCAAAA
*
87085116 TAGTCATTTTA
1 CAGTCATTTTA
87085127 TCGTTTAATG
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 23 0.18
27 107 0.82
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (27 bp):
CAGTCATTTTACCTCATGAGGGCAAAA
Found at i:87085592 original size:10 final size:9
Alignment explanation
Indices: 87085577--87085603 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
87085567 GAAAGGAAAC
87085577 AAAAAAATG
1 AAAAAAATG
87085586 AAAAAAATG
1 AAAAAAATG
87085595 AAAAAAATG
1 AAAAAAATG
87085604 TTCATTCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:87087549 original size:49 final size:49
Alignment explanation
Indices: 87087492--87087682 Score: 341
Period size: 49 Copynumber: 3.9 Consensus size: 49
87087482 ATGTATGAGA
87087492 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
87087541 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
87087590 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
87087637 TGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
87087683 TATATGTGTG
Statistics
Matches: 137, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
47 44 0.32
49 93 0.68
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:87087663 original size:96 final size:97
Alignment explanation
Indices: 87087494--87087682 Score: 344
Period size: 96 Copynumber: 1.9 Consensus size: 97
87087484 GTATGAGATG
*
87087494 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGG
87087559 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
65 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
87087592 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA-GTGTATATATGTGATAAGGC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGC
*
87087656 CTAATGGCTGATGTGATGAATGTGAAA
66 CTAATGGCCGATGTGATGAATGTGAAA
87087683 TATATGTGTG
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
96 46 0.52
98 43 0.48
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (97 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:87087748 original size:48 final size:47
Alignment explanation
Indices: 87087674--87087873 Score: 276
Period size: 48 Copynumber: 4.2 Consensus size: 47
87087664 TGATGTGATG
* * *
87087674 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAAGGGCT
*
87087722 AATGTGAAACATATATAAGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAAGGGCT
*
87087770 AATGTG-AAATATATGAGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAAATATAT-A-TGATATGTATATGTGGTAAAGCCGAAGGGCT
* * *
87087818 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAAGGGCT
87087866 AATGTGAA
1 AATGTGAA
87087874 TGTTGTAACA
Statistics
Matches: 139, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
46 6 0.04
47 3 0.02
48 123 0.88
49 2 0.01
50 5 0.04
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (47 bp):
AATGTGAAAATATATATGATATGTATATGTGGTAAAGCCGAAGGGCT
Found at i:87087774 original size:96 final size:96
Alignment explanation
Indices: 87087674--87087873 Score: 328
Period size: 96 Copynumber: 2.1 Consensus size: 96
87087664 TGATGTGATG
* *
87087674 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
1 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
87087739 AGATATGTATATGTGGTAAAGCCGAAGGGCT
66 AGATATGTATATGTGGTAAAGCCGAAGGGCT
* * * *
87087770 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
* *
87087835 TGATATGTATATGTGGTAAAGCCGAATGGCT
66 AGATATGTATATGTGGTAAAGCCGAAGGGCT
87087866 AATGTGAA
1 AATGTGAA
87087874 TGTTGTAACA
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (96 bp):
AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
AGATATGTATATGTGGTAAAGCCGAAGGGCT
Found at i:87087967 original size:37 final size:37
Alignment explanation
Indices: 87087913--87088003 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
87087903 AACTTGGAAA
*
87087913 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
87087951 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
87087988 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
87088004 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:87092502 original size:10 final size:10
Alignment explanation
Indices: 87092487--87092511 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
87092477 CAAAAAAAAA
87092487 TTTATTTAAT
1 TTTATTTAAT
87092497 TTTATTTAAT
1 TTTATTTAAT
87092507 TTTAT
1 TTTAT
87092512 GGTTGGTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTATTTAAT
Found at i:87096940 original size:29 final size:29
Alignment explanation
Indices: 87096907--87096980 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
87096897 GTGACGAGAT
87096907 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
87096936 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
87096965 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87096981 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:87096996 original size:29 final size:28
Alignment explanation
Indices: 87096964--87097038 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
87096954 CTGGAAATAT
* *
87096964 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
87096993 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
87097021 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
87097039 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:87097007 original size:58 final size:57
Alignment explanation
Indices: 87096907--87097038 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
87096897 GTGACGAGAT
* * * * * *
87096907 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
87096965 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
87097022 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
87097039 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:87104805 original size:29 final size:29
Alignment explanation
Indices: 87104772--87104845 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
87104762 GTGACGAGAT
87104772 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
87104801 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
87104830 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87104846 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:87104861 original size:29 final size:28
Alignment explanation
Indices: 87104829--87104903 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
87104819 CTGGAAATAT
* *
87104829 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
87104858 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
87104886 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
87104904 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:87104872 original size:58 final size:57
Alignment explanation
Indices: 87104772--87104903 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
87104762 GTGACGAGAT
* * * * * *
87104772 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
87104830 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
87104887 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
87104904 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:87108013 original size:39 final size:38
Alignment explanation
Indices: 87107955--87108127 Score: 129
Period size: 39 Copynumber: 4.5 Consensus size: 38
87107945 AAATTGAATG
*
87107955 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAAT-T
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCT--AATCT
* * * *
87107994 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAAT-CT
* * *
87108033 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGT-T
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAATCT
* * * * *
87108069 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAATC-T
* *
87108108 GATATCCGGGTTAAGTCCCG
1 -ATATCCGGGCTAAGACCCG
87108128 TAGGCCTTGG
Statistics
Matches: 114, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
36 28 0.25
37 6 0.05
38 6 0.05
39 58 0.51
40 16 0.14
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAATCT
Found at i:87108081 original size:36 final size:36
Alignment explanation
Indices: 87107993--87108101 Score: 148
Period size: 36 Copynumber: 2.9 Consensus size: 36
87107983 ATGCTGAAAT
*
87107993 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGT-C
87108032 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGT-
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTC
*
87108068 TTTATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
87108102 AATCGTGATA
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
36 30 0.45
37 2 0.03
38 6 0.09
39 28 0.42
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (36 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAGTC
Found at i:87116130 original size:40 final size:39
Alignment explanation
Indices: 87115962--87116132 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
87115952 AGAAATTGAA
* *
87115962 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
87116002 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
87116042 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
87116082 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
87116122 TGATATCCGGG
1 TGATATCCGGG
87116133 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:87118784 original size:25 final size:23
Alignment explanation
Indices: 87118749--87118796 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
87118739 ATCCACACTC
87118749 TTTTTTTTTTCATCATTTTCCTT
1 TTTTTTTTTTCATCATTTTCCTT
* *
87118772 TTTTTTTCATTTCTTTATTTTCCTT
1 TTTTTTT--TTTCATCATTTTCCTT
87118797 CCGTAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTTTTCATCATTTTCCTT
Found at i:87126049 original size:40 final size:39
Alignment explanation
Indices: 87125994--87126127 Score: 112
Period size: 40 Copynumber: 3.4 Consensus size: 39
87125984 CCAGTTTGGT
* *
87125994 ACCCATTACCTCATCGGATAATTCGAAGTAAAAAGTTGAC
1 ACCCAGTACCTCATCGGATAATACGAAGTAAAAA-TTGAC
* * *
87126034 ACCCAGTATCTCATCGGCTAA-ACTGAAGT--AAATTGGC
1 ACCCAGTACCTCATCGGATAATAC-GAAGTAAAAATTGAC
* * * *
87126071 ACCCAGTGCCTTATCGAATTAATCCGAAGTAATAAATTGAC
1 ACCCAGTACCTCATCGGA-TAATACGAAGTAA-AAATTGAC
**
87126112 ACCCAGTGTCTCATCG
1 ACCCAGTACCTCATCG
87126128 ACTTGAAGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
37 17 0.23
38 11 0.15
39 2 0.03
40 23 0.31
41 21 0.28
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (39 bp):
ACCCAGTACCTCATCGGATAATACGAAGTAAAAATTGAC
Found at i:87126115 original size:41 final size:42
Alignment explanation
Indices: 87126062--87126145 Score: 109
Period size: 41 Copynumber: 2.0 Consensus size: 42
87126052 TAAACTGAAG
* *
87126062 TAAATTGGCACCCAGTGCCTTATCGAATT-AA-TCCGAAGTAA
1 TAAATTGACACCCAGTGCCTCATCGAATTGAAGT-CGAAGTAA
* *
87126103 TAAATTGACACCCAGTGTCTCATCGACTTGAAGTCGAAGTAA
1 TAAATTGACACCCAGTGCCTCATCGAATTGAAGTCGAAGTAA
87126145 T
1 T
87126146 CCCTAAACTC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
41 25 0.68
42 11 0.30
43 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
TAAATTGACACCCAGTGCCTCATCGAATTGAAGTCGAAGTAA
Found at i:87128254 original size:49 final size:49
Alignment explanation
Indices: 87128190--87128366 Score: 187
Period size: 49 Copynumber: 3.6 Consensus size: 49
87128180 GGTACGCATA
* *
87128190 TAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAG
* * ** * *
87128239 TAGCCTGCACTTAGTACTACACACGTGACCTACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAG
* * * * * *
87128288 TAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCCGGTACACGTAG
*
87128339 TAGCCT--ACTTAGTACTACACATGCGACC
1 TAGCCTGCACTTAGTACTACACACGCGACC
87128367 TCACAATAGA
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 87 0.81
50 1 0.01
51 17 0.16
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAG
Found at i:87128255 original size:23 final size:23
Alignment explanation
Indices: 87128229--87128304 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
87128219 CAATTATCCG
87128229 GTACACGTAGTAGCCTGCACTTA
1 GTACACGTAGTAGCCTGCACTTA
** * *
87128252 GTACTACACACGT-GACCTACCATCTGA
1 GTAC-ACGTA-GTAG-CCT-GCA-CTTA
87128279 -TACACGTAGTAGCCTGCACTTA
1 GTACACGTAGTAGCCTGCACTTA
87128301 GTAC
1 GTAC
87128305 TACACACGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 3 0.08
23 9 0.24
24 9 0.24
25 9 0.24
26 5 0.13
27 3 0.08
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (23 bp):
GTACACGTAGTAGCCTGCACTTA
Found at i:87128367 original size:98 final size:97
Alignment explanation
Indices: 87128190--87128367 Score: 232
Period size: 98 Copynumber: 1.8 Consensus size: 97
87128180 GGTACGCATA
* *
87128190 TAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTA
1 TAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCT-CACTTAGTA
*
87128255 CTACACACGTGACCTACCATCTGATACACGTAG
65 CTACACACGCGACCTACCATCTGATACACGTAG
* * * * * *
87128288 TAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCT-ACTTAGT
1 TAGCCTGCACATAGTACTACACACGCGA-C-CAATTATCCGGTACACATAGTAGCCTCACTTAGT
*
87128352 ACTACACATGCGACCT
64 ACTACACACGCGACCT
87128368 CACAATAGAT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
98 46 0.68
99 1 0.01
100 21 0.31
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (97 bp):
TAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTCACTTAGTAC
TACACACGCGACCTACCATCTGATACACGTAG
Found at i:87128735 original size:22 final size:22
Alignment explanation
Indices: 87128704--87128750 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
87128694 TTGTCATGTA
87128704 TCTTCATTTCATGT-CATTCTT
1 TCTTCATTTCATGTACATTCTT
87128725 TCTTGCATTTCATGTAACATTCTT
1 TCTT-CATTTCATGT-ACATTCTT
87128749 TC
1 TC
87128751 ATGTCATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
24 9 0.39
ACGTcount: A:0.17, C:0.23, G:0.06, T:0.53
Consensus pattern (22 bp):
TCTTCATTTCATGTACATTCTT
Found at i:87130069 original size:15 final size:15
Alignment explanation
Indices: 87130047--87130109 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
87130037 AAGAAAACGA
87130047 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
87130062 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
*
87130076 AATAAAG-AATCCTAG
1 -ATAAAGAAATCCAAG
*
87130091 AGTAAAGAAACCCAAG
1 A-TAAAGAAATCCAAG
87130107 ATA
1 ATA
87130110 TGATACTATG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
14 7 0.18
15 24 0.63
16 7 0.18
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:87130079 original size:30 final size:30
Alignment explanation
Indices: 87130045--87130104 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
87130035 ACAAGAAAAC
*
87130045 GAATAAAGAAATCCAAGA-TAGAGAAACCCA
1 GAATAAAG-AATCCAAGAGTAAAGAAACCCA
*
87130075 GAATAAAGAATCCTAGAGTAAAGAAACCCA
1 GAATAAAGAATCCAAGAGTAAAGAAACCCA
87130105 AGATATGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.12
Consensus pattern (30 bp):
GAATAAAGAATCCAAGAGTAAAGAAACCCA
Found at i:87133241 original size:51 final size:49
Alignment explanation
Indices: 87133062--87133249 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
87133052 TAGCCAAAGC
* * * * * *
87133062 TATCTGGTACGCATAGTAGCCTACACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
87133111 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACTCACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
87133160 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
87133211 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
87133250 TGCGACCTCA
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
49 84 0.68
50 1 0.01
51 38 0.31
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:87138731 original size:40 final size:40
Alignment explanation
Indices: 87138653--87138860 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
87138643 TCTTCGAAAT
* * * * * *
87138653 TTAG-CCGGATACAACCACAAGCACAATTGCCTTTGGGTC
1 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGTC
* * * * *
87138692 TTAACCCGGGTAT-AGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGTC
*
87138732 TTAGCCAGGATATAATCACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGTC
*
87138772 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGAGTC
1 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGTC
*
87138812 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGTC
87138852 TTAGCCCGG
1 TTAGCCCGG
87138861 GTATCATTCA
Statistics
Matches: 148, Mismatches: 18, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
39 5 0.03
40 141 0.95
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGTC
Found at i:87146884 original size:39 final size:39
Alignment explanation
Indices: 87146747--87146951 Score: 279
Period size: 39 Copynumber: 5.2 Consensus size: 39
87146737 TCTTCGGAAT
* * * *
87146747 TTAG-CCGGATACAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTAGCATAAATGCCTTCGGGTC
* * * * *
87146786 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCATAAATGCCTTCGGGTC
87146826 TTAG-CCGGATATAACACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACACTAGCATAAATGCCTTCGGGTC
87146864 TTAGCCCGGATATAACACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACACTAGCATAAATGCCTTCGGGTC
*
87146903 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CACTAGCATAAATGCCTTCGGGTC
87146943 TTAGCCCGG
1 TTAGCCCGG
87146952 GTATCATTCA
Statistics
Matches: 149, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 25 0.17
39 62 0.42
40 62 0.42
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCATAAATGCCTTCGGGTC
Found at i:87172325 original size:35 final size:36
Alignment explanation
Indices: 87172236--87172442 Score: 183
Period size: 35 Copynumber: 5.5 Consensus size: 36
87172226 ATGATGTCCG
* * *
87172236 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCC
1 GGCTAAGT-CCGAAGGCATTGTGC-GAGTTACTA-ATCC
87172275 GGACTAAGATCCGAAGGCATTGTGCGAGTTACTAATCC
1 GG-CTAAG-TCCGAAGGCATTGTGCGAGTTACTAATCC
87172313 GGCTAAG-CCGAAGGCA-TGTGCGAGTTACTAAATCC
1 GGCTAAGTCCGAAGGCATTGTGCGAGTTACT-AATCC
*
87172348 GGGTTAAGTCCGAAGGCATTTGTGCGAGTTTA-TAA-CC
1 -GGCTAAGTCCGAAGGCA-TTGTGCGAG-TTACTAATCC
* *
87172385 GG--GAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGCTAAGT-CCGAAGGCA-TTGTGCGAGTTACTA-ATCC
*
87172422 GGGCTATGTCCCGAAGGCATT
1 -GGCTAAGT-CCGAAGGCATT
87172443 TGAACGAGTA
Statistics
Matches: 146, Mismatches: 7, Indels: 30
0.80 0.04 0.16
Matches are distributed among these distances:
34 19 0.13
35 35 0.24
36 9 0.06
37 18 0.12
38 10 0.07
39 20 0.14
40 34 0.23
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (36 bp):
GGCTAAGTCCGAAGGCATTGTGCGAGTTACTAATCC
Found at i:87172363 original size:72 final size:71
Alignment explanation
Indices: 87172244--87172442 Score: 199
Period size: 74 Copynumber: 2.7 Consensus size: 71
87172234 CGGGCTAAGT
* * * * *
87172244 CCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTGTGCGAG-TTACT
1 CCCGAAGGCATTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATTGTGCGAGTTTA-T
87172308 AATCCGGCTAAG
63 AA-CCGG--AAG
*
87172320 -CCGAAGGCA-TGTGCGAGTTACTA-AATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTTATA
1 CCCGAAGGCATTGTGCGAGTTACTATAA-CCGGGCTAAGTCCGAAGGCA-TTGTGCGAGTTTATA
*
87172382 ACCGGGAG
64 ACCGGAAG
*
87172390 TCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 -CCCGAAGGCA-TTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATT
87172443 TGAACGAGTA
Statistics
Matches: 105, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
70 2 0.02
72 24 0.23
73 27 0.26
74 33 0.31
75 19 0.18
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (71 bp):
CCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTGTGCGAGTTTATAAC
CGGAAG
Found at i:87172451 original size:40 final size:39
Alignment explanation
Indices: 87172233--87172444 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
87172223 CGAATGATGT
* * *
87172233 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATAA
* *
87172273 CCGGACTAAGATCCGAAGGCA-TTGTGCGAGTTACTA-AT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATAA
87172311 CC-GGCTAAG-CCGAAGGCA--TGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
*
87172345 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTT--TATAA
1 -CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
87172383 CCGGG---AGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
*
87172420 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTG
87172445 AACGAGTAGC
Statistics
Matches: 151, Mismatches: 7, Indels: 28
0.81 0.04 0.15
Matches are distributed among these distances:
34 18 0.12
35 32 0.21
36 6 0.04
37 32 0.21
38 6 0.04
39 17 0.11
40 39 0.26
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:87172458 original size:40 final size:36
Alignment explanation
Indices: 87172320--87172463 Score: 127
Period size: 40 Copynumber: 3.9 Consensus size: 36
87172310 TCCGGCTAAG
87172320 CCGAAGGCA--TGTGCGAGTTACTA-AATCCGGGTTAAGT-
1 CCGAAGGCATTTGTGCGAG-TACTATAA-CCGGG---AGTC
*
87172357 CCGAAGGCATTTGTGCGAGT-TTATAACCGGGAGTC
1 CCGAAGGCATTTGTGCGAGTACTATAACCGGGAGTC
87172392 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAG-TACTATAACCGGG--A-GTC
** *
87172432 CCGAAGGCATTTGAACGAGTAGCTATATCCGG
1 CCGAAGGCATTTGTGCGAGTA-CTATAACCGG
87172464 TTAAACTCCG
Statistics
Matches: 92, Mismatches: 5, Indels: 17
0.81 0.04 0.15
Matches are distributed among these distances:
34 3 0.03
35 19 0.21
36 1 0.01
37 26 0.28
38 3 0.03
39 11 0.12
40 29 0.32
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (36 bp):
CCGAAGGCATTTGTGCGAGTACTATAACCGGGAGTC
Found at i:87180364 original size:40 final size:41
Alignment explanation
Indices: 87180273--87180428 Score: 232
Period size: 40 Copynumber: 3.9 Consensus size: 41
87180263 TCGGATGATA
87180273 ACCGGGCTAAGTCCCGAAGGCATTTGTGC-TGAGTTGACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGT-AGTTGACTAT
87180314 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTA-TT-ACTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGACTAT
*
87180354 AATCGGGCTAAGTCCCGAAGGCA-TTGTGCGTAGTTGACTAT
1 -ACCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGACTAT
*
87180395 ACCGGGCTAAGACCCGAAGGCATTTGTGCG-AGTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTT
87180429 ACATCGGCTA
Statistics
Matches: 106, Mismatches: 3, Indels: 13
0.87 0.02 0.11
Matches are distributed among these distances:
39 9 0.08
40 51 0.48
41 16 0.15
42 29 0.27
43 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (41 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGACTAT
Found at i:87190235 original size:22 final size:22
Alignment explanation
Indices: 87190193--87190236 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
87190183 AATTATTTAC
* *
87190193 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
87190215 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
87190237 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:87190600 original size:40 final size:40
Alignment explanation
Indices: 87190462--87190681 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
87190452 AACCCAAGTA
* * *
87190462 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
* *
87190501 -CTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
*
87190540 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
*
87190579 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
87190619 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
87190659 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
87190682 CATTCGAATA
Statistics
Matches: 166, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
38 11 0.07
39 56 0.34
40 99 0.60
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
Found at i:87198827 original size:22 final size:22
Alignment explanation
Indices: 87198785--87198828 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
87198775 AATTATTTAC
* *
87198785 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
87198807 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
87198829 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:87199111 original size:40 final size:40
Alignment explanation
Indices: 87199052--87199272 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
87199042 AACCCAAGTA
* * *
87199052 CCTTC-GGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
*
87199090 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
* *
87199130 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
87199170 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
87199210 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
87199250 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
87199273 CATTCGAATA
Statistics
Matches: 171, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 5 0.03
39 6 0.04
40 157 0.92
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:87202248 original size:20 final size:18
Alignment explanation
Indices: 87202223--87202259 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
87202213 ATTACTAAGT
87202223 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
87202243 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
87202260 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:87202868 original size:46 final size:46
Alignment explanation
Indices: 87202816--87202991 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
87202806 TGGTTGAGCA
87202816 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
87202862 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
** * *
87202907 CATCCGAGTTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
87202955 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87202992 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.59
47 24 0.23
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87205316 original size:28 final size:28
Alignment explanation
Indices: 87205283--87205345 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
87205273 TCGGGCCGCG
87205283 ATGGGCCGAAAGGGGCCATGTGGGCCCA
1 ATGGGCCGAAAGGGGCCATGTGGGCCCA
* * *
87205311 ATGGGCTGAAAGGGGTCATGTGGGCCTA
1 ATGGGCCGAAAGGGGCCATGTGGGCCCA
87205339 ATGGGCC
1 ATGGGCC
87205346 TATGGGCCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.21, C:0.21, G:0.43, T:0.16
Consensus pattern (28 bp):
ATGGGCCGAAAGGGGCCATGTGGGCCCA
Found at i:87205626 original size:26 final size:27
Alignment explanation
Indices: 87205597--87205670 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 27
87205587 CCCGAATATC
**
87205597 AAATTACCGAAATACTGTCGA-TTGTA
1 AAATTACCGAAATACCCTCGACTTGTA
*
87205623 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGACTTGTA
87205650 AAATTACC-AAAGTACCCTCGA
1 AAATTACCGAAA-TACCCTCGA
87205671 TTTACAGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 21 0.50
27 21 0.50
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGACTTGTA
Found at i:87205681 original size:27 final size:27
Alignment explanation
Indices: 87205662--87206123 Score: 653
Period size: 27 Copynumber: 17.2 Consensus size: 27
87205652 ATTACCAAAG
**
87205662 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
87205689 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
87205716 TACCCTAGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87205743 TACCCTCTATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87205770 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
87205797 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87205824 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
87205851 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
87205878 TACTCTCGA-TTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87205904 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87205931 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
87205958 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87205985 TACCCTCGATTTACA-AATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87206011 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87206038 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
87206065 TACCCTTGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * **
87206092 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
87206119 TACCC
1 TACCC
87206124 CTAGGGTATT
Statistics
Matches: 391, Mismatches: 38, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
26 50 0.13
27 340 0.87
28 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:87205951 original size:107 final size:108
Alignment explanation
Indices: 87205662--87206123 Score: 669
Period size: 107 Copynumber: 4.3 Consensus size: 108
87205652 ATTACCAAAG
* * * * *
87205662 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTAGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
87205727 TACAGAATTACCGTTTTACCCTCTATTTACAGAATTACTGTTT
66 TACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * *
87205770 TACCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* * * *
87205835 TACAAAATTATCGTTTTACCCTCGATTTATAAAATTACTGTTT
66 TACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * *
87205878 TACTCTCGA-TTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
87205942 TACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
66 TACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
87205985 TACCCTCGATTTA-CAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* * *
87206049 TATAGAATTACTGTTTTACCCTTGATTTACAGAATTA-TCGTTT
66 TACAGAATTACCGTTTTACCCTCGATTTACAGAATTACT-GTTT
*
87206092 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACTATTTTACCC
87206124 CTAGGGTATT
Statistics
Matches: 317, Mismatches: 34, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
106 1 0.00
107 194 0.61
108 122 0.38
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (108 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:87206433 original size:2 final size:2
Alignment explanation
Indices: 87206426--87206451 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
87206416 GCTTCGCTAC
87206426 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
87206452 CTGTTCTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87206661 original size:31 final size:31
Alignment explanation
Indices: 87206626--87206698 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
87206616 TTGCATTCAC
* * * **
87206626 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCAAATACTG
*
87206657 ATTCTGATTCTAATTCTGTCACCAAATTCTG
1 ATTCTGATTCTAATTCTGTCACCAAATACTG
87206688 ATTCTGATTCT
1 ATTCTGATTCT
87206699 GTCACCTGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCAAATACTG
Found at i:87206685 original size:25 final size:25
Alignment explanation
Indices: 87206657--87206722 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
87206647 CCTGATACTG
87206657 ATTCTGATTCTAATTCTGTCACCAA
1 ATTCTGATTCTAATTCTGTCACCAA
* **
87206682 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTAATTCTGTCACCAA
*
87206707 ATTCTGATCCTAATTC
1 ATTCTGATTCTAATTC
87206723 ATATTTTGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.23, C:0.24, G:0.11, T:0.42
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACCAA
Found at i:87219990 original size:28 final size:28
Alignment explanation
Indices: 87219932--87219995 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
87219922 TGGAAAGTAG
** * **
87219932 TTGGGCCTGATGGGCTGTATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAAGGACA
*
87219960 TTGGGCCTGATGGGCCATGTGAAGGACA
1 TTGGGCCTGATGGGCCATATGAAGGACA
87219988 TTGGGCCT
1 TTGGGCCT
87219996 AAAGGGGCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.17, C:0.16, G:0.39, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAAGGACA
Found at i:87220354 original size:27 final size:27
Alignment explanation
Indices: 87220312--87220463 Score: 105
Period size: 27 Copynumber: 5.6 Consensus size: 27
87220302 TAATAAAGAG
*
87220312 AAATTACCGAAATACCTCC-GAATTGTA
1 AAATTACCGAAATACCCCCAG-ATTGTA
* * *
87220339 AAATTATCGAAGTACCCCCAGTTTGTA
1 AAATTACCGAAATACCCCCAGATTGTA
** * *
87220366 AAATTACAAAAATACCCTCA-ATTTATA
1 AAATTACCGAAATACCCCCAGA-TTGTA
* *
87220393 AAATTACTGAAATACCCTCA-ATTTGTA
1 AAATTACCGAAATACCCCCAGA-TTGTA
* * ** *
87220420 AAGTTATCGAAATA-CCCTTGTAGTGTA
1 AAATTACCGAAATACCCCCAG-ATTGTA
87220447 AAATTACCGAAATACCC
1 AAATTACCGAAATACCC
87220464 TTGTAGTGTA
Statistics
Matches: 97, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
26 2 0.02
27 91 0.94
28 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGATTGTA
Found at i:87220464 original size:27 final size:27
Alignment explanation
Indices: 87220416--87220504 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
87220406 ACCCTCAATT
* *
87220416 TGTAAAGTTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
87220443 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
87220470 TGTAAAATGACCGACATAGCCC-TGTAG
1 TGTAAAATTACCGAAATA-CCCTTGTAG
*
87220497 GGTAAAAT
1 TGTAAAAT
87220505 GACTATTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 53 0.95
28 3 0.05
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:87220505 original size:27 final size:27
Alignment explanation
Indices: 87220427--87220507 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 27
87220417 GTAAAGTTAT
*
87220427 CGAAATACCCTTGTAGTGTAAAATTAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
87220454 CGAAATACCCTTGTAGTGTAAAATGAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
* *
87220481 CGACATAGCCC-TGTAGGGTAAAATGAC
1 CGAAATA-CCCTTGTAGTGTAAAATGAC
87220508 TATTTTTTCG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
27 47 0.94
28 3 0.06
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
CGAAATACCCTTGTAGTGTAAAATGAC
Found at i:87229254 original size:43 final size:42
Alignment explanation
Indices: 87229177--87229282 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 42
87229167 TATGATTTAT
* * *
87229177 GTGTAAGACCATGTCTAGGACATCGGCATCATATTTGATTTC
1 GTGTAAGACCCTGTCTGGGACATCGGCATCATATTTGATTAC
* *
87229219 GTGTAAGACCCTGTCTGGGATAGT-GGCCTCGATATTTGATTAC
1 GTGTAAGACCCTGTCTGGGACA-TCGGCATC-ATATTTGATTAC
* *
87229262 ATGTAACACCAC-GTCTGGGAC
1 GTGTAAGACC-CTGTCTGGGAC
87229283 GTTTGCATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 24 0.45
43 28 0.53
44 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCCTGTCTGGGACATCGGCATCATATTTGATTAC
Found at i:87233463 original size:48 final size:48
Alignment explanation
Indices: 87233414--87233636 Score: 329
Period size: 48 Copynumber: 4.6 Consensus size: 48
87233404 TGATCCTGTA
* * *
87233414 TAAGACCATGTCTGGGGCATGGCATTGGCATCGTTATGTGAGCCAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* * *
87233462 TAAGACCATGTCTGGTACATGGCATCGACATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* * *
87233510 TAAGATCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
** *
87233558 TAAGACCATGTCTGGGTTATGGCATCGGCATCGTTATATGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
*
87233606 TAAGACTATGTCTGGGACATGGCATCGGCAT
1 TAAGACCATGTCTGGGACATGGCATCGGCAT
87233637 GATGTATTGT
Statistics
Matches: 154, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 154 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
Found at i:87239217 original size:50 final size:51
Alignment explanation
Indices: 87239144--87239284 Score: 176
Period size: 50 Copynumber: 2.8 Consensus size: 51
87239134 AATTATCCAG
*
87239144 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGGA
* * * * * ** *
87239194 TACACGTGGTAGCCTGCATTTAGTACTACACACGTTATCGAAGTTATCGGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGGA
* *
87239245 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
87239285 CACAATAGAT
Statistics
Matches: 74, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 37 0.50
51 37 0.50
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGGA
Found at i:87244851 original size:45 final size:44
Alignment explanation
Indices: 87244742--87244915 Score: 181
Period size: 45 Copynumber: 3.8 Consensus size: 44
87244732 CATTTCGTAT
87244742 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCTATGTTA-TGAGA
1 GCCAGTGTAAGACCATG-TTGG-ACATGGCATCGGCT-TG--ACTGAGA
* *
87244790 GCCAGTGTAAGACCATGTTAGACATGGCATCGGCGTTGACTGTGA
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGGC-TTGACTGAGA
* *
87244835 GCCAGTGTAAGACCATGTTGGACATGGCCTCGACATTGAGAC-GAGA
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGGC-TT--GACTGAGA
* *
87244881 GCTAGTGTAAGACCATGTCTGGGACATGACATCGG
1 GCCAGTGTAAGACCATGT-T-GGACATGGCATCGG
87244916 TAATTCACCC
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
44 1 0.01
45 37 0.34
46 35 0.32
47 8 0.07
48 28 0.26
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
GCCAGTGTAAGACCATGTTGGACATGGCATCGGCTTGACTGAGA
Done.