Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 279 of 438
Found at i:87244914 original size:93 final size:93
Alignment explanation
Indices: 87244742--87244915 Score: 228
Period size: 91 Copynumber: 1.9 Consensus size: 93
87244732 CATTTCGTAT
* ** *
87244742 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCTATGTTATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGACTATGAGACGAGAGCCAGTGTAAGACCATG
*
87244807 TTAGACATGGCATCGGCGTTGACTGTGA
66 TTAGACATGACATCGGCGTTGACTGTGA
* *
87244835 GCCAGTGTAAGACCATG-TTGG-ACATGGCCTCGAC-ATTGAGACGAGAGCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGACTA-TGAGACGAGAGCCAGTGTAAGACCAT
*
87244897 GTCTGGGACATGACATCGG
65 GT-T-AGACATGACATCGG
87244916 TAATTCACCC
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
90 1 0.01
91 35 0.50
92 5 0.07
93 29 0.41
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (93 bp):
GCCAGTGTAAGACCATGTTTGGAACATGGCATCGACTATGAGACGAGAGCCAGTGTAAGACCATG
TTAGACATGACATCGGCGTTGACTGTGA
Found at i:87249011 original size:40 final size:40
Alignment explanation
Indices: 87248952--87249119 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
87248942 CATTTGAATG
* *
87248952 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
87248992 ATATCCGGGCTAGGACCCGAAGGCATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * **
87249032 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * *
87249072 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
87249112 ATATCCGG
1 ATATCCGG
87249120 TTAAATTCCG
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 102 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:87251286 original size:80 final size:80
Alignment explanation
Indices: 87251088--87251291 Score: 288
Period size: 80 Copynumber: 2.5 Consensus size: 80
87251078 TGGATGATAA
*
87251088 CCGGGCTAAGTCCCGAAGGCATTTGCGCCAGT-GACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCCAGTAG-CTA-TATCCGGGCTAAGTCCCGAAGGCATT
* *
87251151 TGTGCGAGTTATTATAT
64 GGTGCGAGTTACTATAT
* *
87251168 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCCAG-TAGCTATATCCGGGCTAAGTCCCGAAGGCATTG
87251232 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
* * *
87251248 CCGGGCTATGTCCCGAAGGCATTCGAGCTAGTAGCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCCAGTAGCTATATCCGG
87251292 TGAAATCCTG
Statistics
Matches: 112, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 3 0.03
80 108 0.96
81 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCCAGTAGCTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTATAT
Found at i:87251291 original size:40 final size:40
Alignment explanation
Indices: 87251088--87251270 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
87251078 TGGATGATAA
* * *
87251088 CCGGGCTAAGTCCCGAAGGCATTTGCGCCAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
87251128 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
87251168 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
87251208 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
87251248 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
87251271 CGAGCTAGTA
Statistics
Matches: 135, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 134 0.99
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:87258921 original size:13 final size:14
Alignment explanation
Indices: 87258896--87258926 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
87258886 TTTTCGAGTA
87258896 ACGAGACTTAGTTT
1 ACGAGACTTAGTTT
87258910 ACGAGA-TTAGTTT
1 ACGAGACTTAGTTT
87258923 ACGA
1 ACGA
87258927 TTTGATTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (14 bp):
ACGAGACTTAGTTT
Found at i:87259260 original size:40 final size:40
Alignment explanation
Indices: 87259205--87259414 Score: 265
Period size: 40 Copynumber: 5.4 Consensus size: 40
87259195 GATGATAACC
* * *
87259205 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
87259245 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
87259285 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
87259325 GGCTAAGT----AAGGCATTGGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * * *
87259361 GGCTATGTCCCGAAGGCATTCGAGCTAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
*
87259400 GG-TAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
87259415 TACTTGGCTT
Statistics
Matches: 154, Mismatches: 10, Indels: 14
0.87 0.06 0.08
Matches are distributed among these distances:
36 34 0.22
38 11 0.07
39 5 0.03
40 104 0.68
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:87259396 original size:76 final size:77
Alignment explanation
Indices: 87259205--87259401 Score: 258
Period size: 76 Copynumber: 2.5 Consensus size: 77
87259195 GATGATAACC
* *
87259205 GGCTAAGTCCCGAAGGCATTTGCGCTAGT-GACTAGT-TCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGAGCTAGTAG-CTA-TATCCGGGCTAAGT--C-AAGGCATTGGT
87259268 GCGAGTTACTATATCCG
61 GCGAGTTACTATATCCG
* *
87259285 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGT-AAGGCATTGGTGCGA
1 GGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCCGGGCTAAGTCAAGGCATTGGTGCGA
87259348 GTTACTATATCCG
65 GTTACTATATCCG
* *
87259361 GGCTATGTCCCGAAGGCATTCGAGCTAGTAGCTATATCCGG
1 GGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATATCCGG
87259402 TAAATCCCGA
Statistics
Matches: 106, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
75 2 0.02
76 61 0.58
79 1 0.01
80 41 0.39
81 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (77 bp):
GGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATATCCGGGCTAAGTCAAGGCATTGGTGCGAG
TTACTATATCCG
Found at i:87264875 original size:27 final size:27
Alignment explanation
Indices: 87264859--87265107 Score: 326
Period size: 27 Copynumber: 9.2 Consensus size: 27
87264849 CTACTTGTAA
87264859 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACTGTTTTACCCTCGATTTACAG
*
87264886 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACTGTTTTACCCTCGA-TTTACAG
* *
87264913 AATTACTATTTTATCCTCGATTTACAG
1 AATTACTGTTTTACCCTCGATTTACAG
*
87264940 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACTGTTTTACCCTCGA-TTTACAG
*
87264967 AATTACTATTTTACCCTCGATTTACAG
1 AATTACTGTTTTACCCTCGATTTACAG
*
87264994 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACTGTTTTACCCTCGA-TTTACAG
* *
87265021 AATTACTATTTTACCCTCGATTTATAG
1 AATTACTGTTTTACCCTCGATTTACAG
*
87265048 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACTGTTTTACCCTCGA-TTTACAG
* * *
87265075 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACTGTTTTACCCTCGATTTACAG
87265102 AATTAC
1 AATTAC
87265108 CAAAATACCC
Statistics
Matches: 196, Mismatches: 18, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 4 0.02
27 188 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
AATTACTGTTTTACCCTCGATTTACAG
Found at i:87265116 original size:27 final size:27
Alignment explanation
Indices: 87264870--87265198 Score: 102
Period size: 27 Copynumber: 12.2 Consensus size: 27
87264860 ATTACTGTTT
* ****
87264870 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ***
87264897 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * *****
87264924 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
87264951 TCCCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
87264978 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ***
87265005 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ****
87265032 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
87265059 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
*
87265086 TACCTTCAATTTACAGAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
*** * * *
87265113 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
* ** * *
87265140 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AATTTACAGAATTACCAAAA
*** *
87265167 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
87265194 TACCC
1 TACCC
87265199 CTGGTTTGTA
Statistics
Matches: 247, Mismatches: 53, Indels: 4
0.81 0.17 0.01
Matches are distributed among these distances:
27 247 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCAAAA
Found at i:87265125 original size:54 final size:54
Alignment explanation
Indices: 87264859--87265108 Score: 419
Period size: 54 Copynumber: 4.6 Consensus size: 54
87264849 CTACTTGTAA
*
87264859 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
87264913 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
87264967 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
87265021 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
87265075 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
87265109 AAAATACCCT
Statistics
Matches: 183, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 183 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:87265151 original size:81 final size:81
Alignment explanation
Indices: 87264978--87265144 Score: 192
Period size: 81 Copynumber: 2.1 Consensus size: 81
87264968 ATTACTATTT
* * ***
87264978 TACCCTC-GATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCAG-TTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCAAAATACCCTCGAT
* * ****
87265042 TTATAGAATTACCGTTT
65 TTATAAAATCACCAAAA
* * *
87265059 TACCCTCAGTTTACAGAATTACCGTTTTACCTTCAATTTACAGAATTACCAAAATACCCTTGGTT
1 TACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCAAAATACCCTCGATT
87265124 TATAAAATCACCAAAA
66 TATAAAATCACCAAAA
87265140 TACCC
1 TACCC
87265145 CTAGTTTGTA
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 70 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (81 bp):
TACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCAAAATACCCTCGATT
TATAAAATCACCAAAA
Found at i:87265203 original size:27 final size:27
Alignment explanation
Indices: 87265102--87265255 Score: 209
Period size: 27 Copynumber: 5.7 Consensus size: 27
87265092 CAATTTACAG
87265102 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * *
87265129 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
87265156 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
87265183 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
87265210 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
87265237 AATTACCGAAATACCCTTG
1 AATTACCAAAATACCCTTG
87265256 TAGGGTAGAA
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:87265255 original size:81 final size:81
Alignment explanation
Indices: 87265095--87265255 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 81
87265085 TTACCTTCAA
* * *
87265095 TTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
87265160 ACTAAAATACCCTTGG
66 ACCAAAATACCCTTGG
* * * * *
87265176 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
87265241 ACCGAAATACCCTTG
66 ACCAAAATACCCTTG
87265256 TAGGGTAGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
ACCAAAATACCCTTGG
Found at i:87265269 original size:54 final size:54
Alignment explanation
Indices: 87265102--87265252 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
87265092 CAATTTACAG
* *
87265102 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
87265156 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
87265210 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
87265253 TTGTAGGGTA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:87268015 original size:22 final size:22
Alignment explanation
Indices: 87267944--87268062 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
87267934 GTATATTTGA
87267944 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
87267966 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
87267991 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
87268013 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
87268038 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
87268060 GAT
1 GAT
87268063 GAATGCGAAC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:87268084 original size:25 final size:25
Alignment explanation
Indices: 87267962--87268087 Score: 92
Period size: 25 Copynumber: 5.3 Consensus size: 25
87267952 CGAATGGCCA
*
87267962 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
* *
87267987 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-CGAACAT-GCATAT
*
87268009 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
* *
87268034 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-CGAACAT-GCATAT
87268056 ATGTGATGAATGCGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
87268081 ATGTGAT
1 ATGTGAT
87268088 AAGGTAGAAT
Statistics
Matches: 76, Mismatches: 11, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
22 17 0.22
23 18 0.24
24 18 0.24
25 23 0.30
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (25 bp):
ATGTGATGAATGCGAACATGCATAT
Found at i:87268147 original size:47 final size:47
Alignment explanation
Indices: 87267919--87268112 Score: 316
Period size: 47 Copynumber: 4.1 Consensus size: 47
87267909 GATTTTATGA
** * * *
87267919 GATGAATGTGAATGTGTATATTTGAGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
87267966 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
87268013 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
87268060 GATGAATGCGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
87268107 GATGAA
1 GATGAA
87268113 CGTGGAAGAG
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 139 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:87277804 original size:2 final size:2
Alignment explanation
Indices: 87277797--87277827 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
87277787 TTTTATTTTC
87277797 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
87277828 TGTACATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87279221 original size:132 final size:131
Alignment explanation
Indices: 87278971--87279294 Score: 302
Period size: 132 Copynumber: 2.5 Consensus size: 131
87278961 TCATGTTTTC
* * * * *
87278971 TAAAAATCCTTTAAAACGAAGGCGATGTTCGATATTTGACAATTCGCA-GAATCGTGCCCTAACA
1 TAAAAAT--TTTAAAAAGAAAGCAATGTTCGATGTTTGGCAATTCG-AGGAATCGTGCCCTAACA
* * * * * *
87279035 TGCTGAGTTGCCATTTTCTCGTTTGCTTAAAATAATCGAATGTTCCTTTGAAATTTTAC-CTATG
63 TGCTGAGTTGCAATTTTCTCGTTTGCTTAAAATAATCGAATATCCCCTTAAAATTTCACTC-ATG
87279099 --TCTT
127 CTTC-T
* * * *
87279103 TAAAGATTTTATAAAACGAAAGTAATGTTCGATGTTTGGCAATTC-AGGGAATCGTGCCCTATCG
1 TAAAAATTTTA-AAAA-GAAAGCAATGTTCGATGTTTGGCAATTCGA-GGAATCGTGCCCTAACA
* * *
87279167 TGCTGGGTTGCAATTTTCT-G-TTGGTTCAAAATAATTGAATATCCCCCTTAAAATTTCACTCAT
63 TGCTGAGTTGCAATTTTCTCGTTTGCTT-AAAATAATCGAATAT-CCCCTTAAAATTTCACTCAT
87279230 GCTTCT
126 GCTTCT
* * * * *
87279236 TAAAAATTTTAAAAATAAAGCAATGCTCAATGTTTAGAAATTCGAGGAATCGTGCCCTA
1 TAAAAATTTTAAAAAGAAAGCAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTA
87279295 CTGTGCTAGG
Statistics
Matches: 157, Mismatches: 25, Indels: 21
0.77 0.12 0.10
Matches are distributed among these distances:
130 10 0.06
131 53 0.34
132 80 0.51
133 12 0.08
134 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (131 bp):
TAAAAATTTTAAAAAGAAAGCAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTAACATGC
TGAGTTGCAATTTTCTCGTTTGCTTAAAATAATCGAATATCCCCTTAAAATTTCACTCATGCTTC
T
Found at i:87280379 original size:15 final size:15
Alignment explanation
Indices: 87280359--87280389 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
87280349 ATATCGATTT
87280359 TTTATATCAAAATCA
1 TTTATATCAAAATCA
87280374 TTTATATCAAAATCA
1 TTTATATCAAAATCA
87280389 T
1 T
87280390 GTAAAGACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (15 bp):
TTTATATCAAAATCA
Found at i:87281991 original size:21 final size:22
Alignment explanation
Indices: 87281951--87281996 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
87281941 AAGTTTTTTG
* **
87281951 AAAGATATATGTTTGGATGA-A
1 AAAGAAATATGTTTACATGAGA
87281972 AAAGAAATATGTTTACATGAGA
1 AAAGAAATATGTTTACATGAGA
87281994 AAA
1 AAA
87281997 AAAAACAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.50, C:0.02, G:0.20, T:0.28
Consensus pattern (22 bp):
AAAGAAATATGTTTACATGAGA
Found at i:87282944 original size:9 final size:9
Alignment explanation
Indices: 87282932--87282961 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
87282922 ATTTTAATGA
87282932 TTTTGAATT
1 TTTTGAATT
87282941 TTTTGAATT
1 TTTTGAATT
87282950 TTTTGAATT
1 TTTTGAATT
87282959 TTT
1 TTT
87282962 AAAATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (9 bp):
TTTTGAATT
Found at i:87282967 original size:18 final size:18
Alignment explanation
Indices: 87282932--87282969 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
87282922 ATTTTAATGA
**
87282932 TTTTGAATTTTTTGAATT
1 TTTTGAATTTTTAAAATT
87282950 TTTTGAATTTTTAAAATT
1 TTTTGAATTTTTAAAATT
87282968 TT
1 TT
87282970 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (18 bp):
TTTTGAATTTTTAAAATT
Found at i:87284354 original size:3 final size:3
Alignment explanation
Indices: 87284346--87284387 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
87284336 ATAGTGCAAT
*
87284346 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
87284388 AACAACAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:87284531 original size:22 final size:20
Alignment explanation
Indices: 87284489--87284533 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
87284479 TGATAATATA
* *
87284489 AAAGAAATTTGTGAGGCAAG
1 AAAGAAATTTGAGAGGAAAG
87284509 AAAGAAAATTATGAGAGGAAAG
1 AAAG-AAATT-TGAGAGGAAAG
87284531 AAA
1 AAA
87284534 TAGATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 5 0.24
22 12 0.57
ACGTcount: A:0.56, C:0.02, G:0.27, T:0.16
Consensus pattern (20 bp):
AAAGAAATTTGAGAGGAAAG
Found at i:87291635 original size:20 final size:20
Alignment explanation
Indices: 87291612--87291651 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
87291602 AAAATGGCTC
87291612 GAAAAT-GGTAAAAAAAATTG
1 GAAAATAGG-AAAAAAAATTG
*
87291632 GAAATTAGGAAAAAAAATTG
1 GAAAATAGGAAAAAAAATTG
87291652 AAGATTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (20 bp):
GAAAATAGGAAAAAAAATTG
Found at i:87295743 original size:24 final size:25
Alignment explanation
Indices: 87295716--87295763 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
87295706 TTAGCCAGAT
*
87295716 ATTTTTAGA-TTAAAAAAGGAAAGA
1 ATTTCTAGACTTAAAAAAGGAAAGA
*
87295740 ATTTCTAGAGCTTAAATAAGGAAA
1 ATTTCTAGA-CTTAAAAAAGGAAA
87295764 TATGACAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
26 12 0.60
ACGTcount: A:0.50, C:0.04, G:0.17, T:0.29
Consensus pattern (25 bp):
ATTTCTAGACTTAAAAAAGGAAAGA
Found at i:87309339 original size:18 final size:17
Alignment explanation
Indices: 87309318--87309367 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
87309308 TTGAGATTAT
*
87309318 TTTCACTATTATAAAACA
1 TTTCACTAGT-TAAAACA
87309336 TTTCACTAAGTTAAAACA
1 TTTCACT-AGTTAAAACA
87309354 TTTCACTAAGTTAA
1 TTTCACT-AGTTAA
87309368 GCTATGTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 28 0.93
19 2 0.07
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.38
Consensus pattern (17 bp):
TTTCACTAGTTAAAACA
Found at i:87310523 original size:2 final size:2
Alignment explanation
Indices: 87310516--87310544 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
87310506 ATTCAATTCA
87310516 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87310545 ATTTTGACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:87313556 original size:15 final size:15
Alignment explanation
Indices: 87313536--87313568 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
87313526 TTGGGTTGGT
*
87313536 TTTGGGTCAAGTCAA
1 TTTGGGCCAAGTCAA
87313551 TTTGGGCCAAGTCAA
1 TTTGGGCCAAGTCAA
87313566 TTT
1 TTT
87313569 ATGTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (15 bp):
TTTGGGCCAAGTCAA
Found at i:87315319 original size:48 final size:48
Alignment explanation
Indices: 87315247--87315421 Score: 251
Period size: 48 Copynumber: 3.6 Consensus size: 48
87315237 ATGAGATCGC
* * * * *
87315247 GTGTAAGACCATGTTTGGGGCATGGCATCGATGTTGATATGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCTA
* **
87315295 ATGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCTA
* *
87315343 GTGTAAGACCATGTCTGGAACATGGCATCGGTGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCTA
*
87315391 GTGTAAGACCATGTTTGGGACATGGCATCGG
1 GTGTAAGACCATGTCTGGGACATGGCATCGG
87315422 CATTGACATA
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCTA
Found at i:87315411 original size:96 final size:96
Alignment explanation
Indices: 87315247--87315506 Score: 291
Period size: 96 Copynumber: 2.8 Consensus size: 96
87315237 ATGAGATCGC
* **
87315247 GTGTAAGACCATGTTTGGGGCATGGCATCGATGTTGATATGTAAGCCAATGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGAACATGGCATCGATGTTGATATGTAAGCCAATGTAAGACCATGTCTG
* **
87315312 GGACATGGCATCGGCATTGATATGTGAGC-TA
66 GGACATGGCATCGGCATTGACATAAGA-CTTA
* ** * * *
87315343 GTGTAAGACCATGTCTGGAACATGGCATCGGTGTTGATATGTGTGCTAGTGTAAGACCATGTTTG
1 GTGTAAGACCATGTCTGGAACATGGCATCGATGTTGATATGTAAGCCAATGTAAGACCATGTCTG
*
87315408 GGACATGGCATCGGCATTGACATAAGACTTT
66 GGACATGGCATCGGCATTGACATAAGACTTA
* * * * * *
87315439 GTATAAGACCATATCTGGAATATGGCATCGA---T-ATGTG-GATCC-ATGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGAACATGGCATCGATGTTGATATGTAAGCCAATGTAAGACCATGTCTG
87315498 GGACATGGC
66 GGACATGGC
87315507 TTTGGCACTC
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
90 24 0.17
91 2 0.01
92 4 0.03
93 1 0.01
95 1 0.01
96 108 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGAACATGGCATCGATGTTGATATGTAAGCCAATGTAAGACCATGTCTG
GGACATGGCATCGGCATTGACATAAGACTTA
Found at i:87315513 original size:48 final size:47
Alignment explanation
Indices: 87315248--87315506 Score: 219
Period size: 48 Copynumber: 5.5 Consensus size: 47
87315238 TGAGATCGCG
* * *** * * *
87315248 TGTAAGACCATGTTTGGGGCATGGCATCGATGTTGATATGTAAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGA-TCTA
*
87315296 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGATCTA
* **
87315343 GTGTAAGACCATGTCTGGAACATGGCATCGGTGTTGATATGTG-TGCTA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAT-CTA
* * ** *
87315391 GTGTAAGACCATGTTTGGGACATGGCATCGGCATTGACATAAGA-CTT
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGATCTA
* * *
87315438 TGTATAAGACCATATCT-GGA-AT---AT-GGCATCGATATGTGGATCCA
1 TG--TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGT-GATCTA
87315482 TGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
87315507 TTTGGCACTC
Statistics
Matches: 170, Mismatches: 29, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
42 21 0.12
43 7 0.04
44 5 0.03
46 4 0.02
47 7 0.04
48 126 0.74
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGATCTA
Found at i:87317520 original size:20 final size:20
Alignment explanation
Indices: 87317488--87317534 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
87317478 TATTGTTATT
*
87317488 TCAGAATATATAATTTATAC
1 TCAGAAAATATAATTTATAC
*
87317508 TCGGAAAATATAATTTATAC
1 TCAGAAAATATAATTTATAC
87317528 TCAGAAA
1 TCAGAAA
87317535 TTAAATCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.34
Consensus pattern (20 bp):
TCAGAAAATATAATTTATAC
Found at i:87317913 original size:16 final size:18
Alignment explanation
Indices: 87317887--87317919 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87317877 TTTAAATAAA
87317887 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
87317904 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
87317920 CTCGATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:87321046 original size:27 final size:28
Alignment explanation
Indices: 87321016--87321085 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
87321006 ATAATAAGTC
*
87321016 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
87321043 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
87321071 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87321086 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87329257 original size:26 final size:26
Alignment explanation
Indices: 87329228--87329304 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 26
87329218 ATTCCAAAAA
87329228 TAATAATATTTTAATATATTTAATAT
1 TAATAATATTTTAATATATTTAATAT
* * * *
87329254 TAATATTAATTT-A-ATACTT-ATCT
1 TAATAATATTTTAATATATTTAATAT
*
87329277 TAATAATATTTTATTA-ATTTAATAT
1 TAATAATATTTTAATATATTTAATAT
87329302 TAA
1 TAA
87329305 AGTGATTATC
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
23 13 0.33
24 8 0.21
25 8 0.21
26 10 0.26
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (26 bp):
TAATAATATTTTAATATATTTAATAT
Found at i:87329269 original size:11 final size:11
Alignment explanation
Indices: 87329247--87329304 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
87329237 TTTAATATAT
87329247 TTAATATTAATA
1 TTAAT-TTAATA
87329259 TTAATTTAATA
1 TTAATTTAATA
87329270 CTT-ATCTTAATA
1 -TTAAT-TTAATA
*
87329282 AT-ATTT--TA
1 TTAATTTAATA
87329290 TTAATTTAATA
1 TTAATTTAATA
87329301 TTAA
1 TTAA
87329305 AGTGATTATC
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
8 3 0.08
9 4 0.10
10 2 0.05
11 17 0.44
12 13 0.33
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (11 bp):
TTAATTTAATA
Found at i:87331007 original size:3 final size:3
Alignment explanation
Indices: 87330999--87331067 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
87330989 TCGCTCTTCC
87330999 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
87331047 ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
87331068 TTGACTTTTG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:87337323 original size:24 final size:24
Alignment explanation
Indices: 87337292--87337345 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
87337282 ACCTATCTCA
*
87337292 TTAT-ATATTTATTTTAT-AAATGT
1 TTATAATATTTATATTATGAAAT-T
*
87337315 TTATAATATTTATATTATGTAATT
1 TTATAATATTTATATTATGAAATT
87337339 TTATAAT
1 TTATAAT
87337346 TGTGATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 4 0.15
24 20 0.74
25 3 0.11
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (24 bp):
TTATAATATTTATATTATGAAATT
Found at i:87352201 original size:40 final size:38
Alignment explanation
Indices: 87352116--87352215 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 38
87352106 CTGGAAATTA
* *
87352116 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGCGGC
*
87352154 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-CG-GC
87352196 TATCCGGGCTAAGACCCGAA
1 TATCCGGGCTAAGACCCGAA
87352216 TTCGTGCACG
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 3 0.06
40 46 0.85
41 2 0.04
42 2 0.04
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGCGGC
Found at i:87352236 original size:36 final size:38
Alignment explanation
Indices: 87352157--87352238 Score: 98
Period size: 36 Copynumber: 2.2 Consensus size: 38
87352147 TAGCGGCTAC
*
87352157 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAA-G-ATTCGTGCAAGTCGGTCT
*
87352197 ATCCGGGCTAAGACCCG-A-ATTCGTGCACGT-GGTCAT
1 ATCCGGGCTAAGACCCGAAGATTCGTGCAAGTCGGTC-T
87352233 ATCCGG
1 ATCCGG
87352239 TTGTATTCCG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
35 3 0.08
36 18 0.46
39 1 0.03
40 17 0.44
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGATTCGTGCAAGTCGGTCT
Found at i:87361021 original size:20 final size:20
Alignment explanation
Indices: 87360998--87361060 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
87360988 TTATAAATTC
* *
87360998 TTTTAACTTGACTGAAATCA
1 TTTTGACTTGACTAAAATCA
**
87361018 TTTTGACTTGGTTAAAATCA
1 TTTTGACTTGACTAAAATCA
**
87361038 TTTTGACTTGGTTAAAATCA
1 TTTTGACTTGACTAAAATCA
87361058 TTT
1 TTT
87361061 GCACTTGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTTGACTTGACTAAAATCA
Found at i:87361067 original size:20 final size:20
Alignment explanation
Indices: 87361012--87361060 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
87361002 AACTTGACTG
87361012 AAATCATTTTGACTTGGTTA
1 AAATCATTTTGACTTGGTTA
87361032 AAATCATTTTGACTTGGTTA
1 AAATCATTTTGACTTGGTTA
87361052 AAATCATTT
1 AAATCATTT
87361061 GCACTTGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
AAATCATTTTGACTTGGTTA
Found at i:87364699 original size:20 final size:20
Alignment explanation
Indices: 87364648--87364699 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
87364638 CGGATAGGGG
*
87364648 ACACGGGCGTGCCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
*
87364668 ACACGGGCGTGTCCTAAAGC
1 ACACGGGCGTGTCCCAAAGC
87364688 ACACGGGCGTGT
1 ACACGGGCGTGT
87364700 GCATTGTCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGC
Found at i:87368543 original size:12 final size:12
Alignment explanation
Indices: 87368526--87368550 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
87368516 TATGGACCAA
87368526 CTAGAGTTTTGT
1 CTAGAGTTTTGT
87368538 CTAGAGTTTTGT
1 CTAGAGTTTTGT
87368550 C
1 C
87368551 ATACATAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.12, G:0.24, T:0.48
Consensus pattern (12 bp):
CTAGAGTTTTGT
Found at i:87369368 original size:80 final size:80
Alignment explanation
Indices: 87369256--87369437 Score: 211
Period size: 80 Copynumber: 2.3 Consensus size: 80
87369246 GCTCGATTGT
* * *** * * * **
87369256 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
87369321 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
87369336 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
87369401 TACTAGCATAATTGC
66 AACTAGCACAAATGC
*
87369416 CTTCGGGACTTAGTCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
87369438 CATTCCAATG
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.29
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:87369399 original size:40 final size:40
Alignment explanation
Indices: 87369242--87369437 Score: 178
Period size: 40 Copynumber: 4.9 Consensus size: 40
87369232 GGATATAGCG
* * * * * * * *
87369242 ACTCGCTCGATTGTCTTCGGGACCTAGCCCGGTTATAGTG
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATA
* * * * **
87369282 ATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTA
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATA
* * *
87369322 ACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACA
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATA
*
87369362 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATT
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATA
* * * *
87369402 ACTAGCA-TAATTGCCTTCGGGACTTAGTCCGGATAT
1 ACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATAT
87369438 CATTCCAATG
Statistics
Matches: 128, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.02
40 126 0.98
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.29
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATA
Found at i:87372617 original size:12 final size:13
Alignment explanation
Indices: 87372600--87372631 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
87372590 ATAGCACATT
87372600 TCAAAAC-ATGCA
1 TCAAAACTATGCA
87372612 TCAAAACTATGCA
1 TCAAAACTATGCA
87372625 -CAAAACT
1 TCAAAACT
87372632 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:87382108 original size:23 final size:24
Alignment explanation
Indices: 87382080--87382145 Score: 91
Period size: 23 Copynumber: 2.7 Consensus size: 24
87382070 TCATCCCAAT
87382080 TTTACCCCGATAAAATTATGACAA
1 TTTACCCCGATAAAATTATGACAA
87382104 -TTACCCC-AGTAAAATTATGACAA
1 TTTACCCCGA-TAAAATTATGACAA
87382127 TTTTACCCCTGATAAAATT
1 -TTTACCCC-GATAAAATT
87382146 TTTAGGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
22 1 0.03
23 21 0.57
25 7 0.19
26 7 0.19
27 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (24 bp):
TTTACCCCGATAAAATTATGACAA
Found at i:87386845 original size:47 final size:48
Alignment explanation
Indices: 87386569--87386846 Score: 237
Period size: 48 Copynumber: 5.9 Consensus size: 48
87386559 CACATAGTAG
* ** * * * * *
87386569 GATGCCAATGCCATATCCTGGATATGGTCTTATATGGGACCACTTATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATC
* * * *
87386617 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCACACAT-
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATC
* * * * *
87386664 -AT-CGAA-GTCGATAG-CCCA-ACTATGGTCTTACACGATGTTCTCATATC
1 GATGCCAATG-CCAT-GTCCCAGAC-ATGGTCTTACACG-GGATCACATATC
* ** *
87386711 GATGCCAATGCCATGTCCCAAACATGGTCTTACATAGGATCACATAAC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATC
*
87386759 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATC
* * **
87386807 GATGTCGATGCCAT-TCCCAGATGTGGTCTTACACGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATC
87386847 TCATCAACCT
Statistics
Matches: 189, Mismatches: 31, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
44 3 0.02
45 22 0.12
46 8 0.04
47 23 0.12
48 109 0.58
49 21 0.11
50 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATC
Found at i:87394742 original size:21 final size:21
Alignment explanation
Indices: 87394676--87394747 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
87394666 AGATTTTAAT
* *
87394676 AATTATTTATAGTTAATTATT
1 AATTATTTATATTTAATTATA
** * *
87394697 GTTTAATTATATTTAAATA-A
1 AATTATTTATATTTAATTATA
*
87394717 AATTATTTATATTTATTTATA
1 AATTATTTATATTTAATTATA
87394738 AATTATTTAT
1 AATTATTTAT
87394748 TTTTTATTCA
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 14 0.36
21 25 0.64
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
AATTATTTATATTTAATTATA
Found at i:87399360 original size:2 final size:2
Alignment explanation
Indices: 87399353--87399406 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
87399343 GAAAAACAAG
87399353 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87399395 TA TA TA TA TA TA
1 TA TA TA TA TA TA
87399407 AAATAAACCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:87399587 original size:2 final size:2
Alignment explanation
Indices: 87399582--87399615 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
87399572 TTAGTCTTTA
87399582 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87399616 GAGTTGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87401141 original size:62 final size:62
Alignment explanation
Indices: 87401065--87401186 Score: 235
Period size: 62 Copynumber: 2.0 Consensus size: 62
87401055 ATAGTTATAG
87401065 ATTTTATGTGTTTTGGATTTAAAAGCAATATATGAAAATAAAAAACACCATTAAGGACAATA
1 ATTTTATGTGTTTTGGATTTAAAAGCAATATATGAAAATAAAAAACACCATTAAGGACAATA
*
87401127 ATTTTATGTGTTTTGGATTTAAAAGCAATATATGAAAATAAAAAAGACCATTAAGGACAA
1 ATTTTATGTGTTTTGGATTTAAAAGCAATATATGAAAATAAAAAACACCATTAAGGACAA
87401187 CAATATATGT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (62 bp):
ATTTTATGTGTTTTGGATTTAAAAGCAATATATGAAAATAAAAAACACCATTAAGGACAATA
Found at i:87404995 original size:11 final size:11
Alignment explanation
Indices: 87404979--87405003 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
87404969 ATATCTAGAA
87404979 TTCTCTTCATT
1 TTCTCTTCATT
87404990 TTCTCTTCATT
1 TTCTCTTCATT
87405001 TTC
1 TTC
87405004 ATCAGCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:87408994 original size:111 final size:111
Alignment explanation
Indices: 87408813--87409518 Score: 532
Period size: 111 Copynumber: 6.4 Consensus size: 111
87408803 GTCAATGCCG
* * *
87408813 ACCTTTAAAAAAGGTTGCGATAGACC-TAGTC-AAGGCCAACCTTTGAAAAAGGTTGTGATAGAC
1 ACCTTTAAAAAAGGTTGGGATAGACCTTA-TCTAAGG-CAACCTTTAAAAAAGGTTGGGATAGAC
* * *
87408876 C-TGTCTAAGGCAACC-TTAAAAAGGTTGGGATAGACCAGCCTAAGATA
64 CTTATCTAAGGCAACCTTTAAAAAGGTTGGGATAGACC-GTCTAAGACA
* * * * * *
87408923 ACCTTTAAAAAAAGTTGGGATAGACCATATCTAAGGCAACATTTAAAAAAAGTTGCGATAAACCT
1 ACCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGGCAACCTTTAAAAAAGGTTGGGATAGACCT
* *
87408988 TATCTAAGGCAACCTTTAAAAAAGATTGGGATAGAATCGTCTAA-AGCA
66 TATCTAAGGCAACCTTT-AAAAAGGTTGGGATAG-ACCGTCTAAGA-CA
* * *
87409036 ACC-TT-AAATAGGTTGGTG-TAGACCTTGTCTAGGGCAACCTTTAAAAAAGGTTGGGATAGACC
1 ACCTTTAAAAAAGGTTGG-GATAGACCTTATCTAAGGCAACCTTTAAAAAAGGTTGGGATAGACC
* *
87409098 TTATCTAAGGCAACCTTTTAAAAATGTTGGGATAGACCTTGTCTAAGGCA
65 TTATCTAAGGCAACC-TTTAAAAAGGTTGGGATAGACC--GTCTAAGACA
* * * * *
87409148 ACATTTAAAAAAGGTTGGGATAGATCTTGTTTAAGACAACC-TTAAAAAAGGGTTGGGATAGA-C
1 ACCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGGCAACCTTTAAAAAA-GGTTGGGATAGACC
* * * ** *
87409211 TTGTTTAAGGCAACCTTAAAAAATGGTTACGATAGACTTGTCTAA-AGCA
65 TTATCTAAGGCAACCTTTAAAAA-GGTTGGGATAGAC-CGTCTAAGA-CA
* * ** * *
87409260 ACC-TT-AAAAAGGTTGGGATAGA--TTCGTCTAAGGTAACC--TCCAAAAGGTTGGAATAGATC
1 ACCTTTAAAAAAGGTTGGGATAGACCTT-ATCTAAGGCAACCTTTAAAAAAGGTTGGGATAGACC
* * * * *
87409319 TTGTCTAAAGCAACTTTTAGAAAAGGTTGGGATTGACCTATCTAAGACA
65 TTATCTAAGGCAACCTTTA-AAAAGGTTGGGATAGACC-GTCTAAGACA
* * * * * *
87409368 A-CGTT-AAAAATGTTGGGATAGACC-CATTTACA-ACAACC-TTAAAAAA-GTTGAGATAGACC
1 ACCTTTAAAAAAGGTTGGGATAGACCTTATCTA-AGGCAACCTTTAAAAAAGGTTGGGATAGACC
* * * * *
87409427 TTTTCTAAGGCAA-CTTAAAAAAAGTTGGGATAAACTCGTCTAAGGCA
65 TTATCTAAGGCAACCTTTAAAAAGGTTGGGATAGAC-CGTCTAAGACA
* * ** *
87409474 ACC-TTAAAAAA-GTTAGGATAAACC-CGTCTAAGGCAAAC-TTAAAAA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGGCAACCTTTAAAAA
87409519 GGTCAGGATA
Statistics
Matches: 482, Mismatches: 81, Indels: 70
0.76 0.13 0.11
Matches are distributed among these distances:
105 1 0.00
106 51 0.11
107 22 0.05
108 87 0.18
109 21 0.04
110 68 0.14
111 96 0.20
112 36 0.07
113 59 0.12
114 41 0.09
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (111 bp):
ACCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGGCAACCTTTAAAAAAGGTTGGGATAGACCT
TATCTAAGGCAACCTTTAAAAAGGTTGGGATAGACCGTCTAAGACA
Found at i:87409165 original size:38 final size:37
Alignment explanation
Indices: 87408815--87409518 Score: 549
Period size: 38 Copynumber: 19.2 Consensus size: 37
87408805 CAATGCCGAC
* *
87408815 CTTTAAAAAAGGTTGCGATAGACCTAGTC-AAGGCCAA
1 CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG-CAA
* *
87408852 CCTTTGAAAAAGGTTGTGATAGACC-TGTCTAAGGCAA
1 -CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * * **
87408889 CCTT-AAAAAGGTTGGGATAGACC-AGCCTAAGATAA
1 CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * *
87408924 CCTTTAAAAAAAGTTGGGATAGACCATATCTAAGGCAA
1 -CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * * *
87408962 CATTTAAAAAAAGTTGCGATAAACCTTATCTAAGGCAA
1 C-TTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * * *
87409000 CCTTTAAAAAAGATTGGGATAGA-ATCGTCTAAAGCAA
1 -CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * *
87409037 CCTT-AAATAGGTTGGTG-TAGACCTTGTCTAGGGCAA
1 CTTTAAAAAAGGTTGG-GATAGACCTTGTCTAAGGCAA
*
87409073 CCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGGCAA
1 -CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* *
87409111 CCTTTTAAAAATGTTGGGATAGACCTTGTCTAAGGCAA
1 -CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * *
87409149 CATTTAAAAAAGGTTGGGATAGATCTTGTTTAAGACAA
1 C-TTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* *
87409187 CCTTAAAAAAGGGTTGGGATAGA-CTTGTTTAAGGCAA
1 CTTTAAAAAA-GGTTGGGATAGACCTTGTCTAAGGCAA
* ** *
87409224 CCTTAAAAAATGGTTACGATAGA-CTTGTCTAAAGCAA
1 CTTTAAAAAA-GGTTGGGATAGACCTTGTCTAAGGCAA
* *
87409261 CCTT-AAAAAGGTTGGGATAGA--TTCGTCTAAGGTAA
1 CTTTAAAAAAGGTTGGGATAGACCTT-GTCTAAGGCAA
* ** * * *
87409296 C-CTCCAAAAGGTTGGAATAGATCTTGTCTAAAGCAA
1 CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * * *
87409332 CTTTTAGAAAAGGTTGGGATTGACC-TATCTAAGACAA
1 C-TTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* *
87409369 CGTT-AAAAATGTTGGGATAGACCCATT-TAC-AA--CAA
1 CTTTAAAAAAGGTTGGGATAGA-CC-TTGT-CTAAGGCAA
* * *
87409404 CCTTAAAAAA-GTTGAGATAGACCTTTTCTAAGGCAA
1 CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * *
87409440 C-TTAAAAAAAGTTGGGATA-AACTCGTCTAAGGCAA
1 CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
* * * *
87409475 CCTTAAAAAA-GTTAGGATAAACC-CGTCTAAGGCAAA
1 CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGC-AA
87409511 C-TTAAAAA
1 CTTTAAAAA
87409519 GGTCAGGATA
Statistics
Matches: 551, Mismatches: 83, Indels: 67
0.79 0.12 0.10
Matches are distributed among these distances:
33 3 0.01
34 8 0.01
35 151 0.27
36 69 0.13
37 112 0.20
38 207 0.38
39 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (37 bp):
CTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA
Found at i:87409375 original size:145 final size:147
Alignment explanation
Indices: 87408813--87409485 Score: 394
Period size: 149 Copynumber: 4.6 Consensus size: 147
87408803 GTCAATGCCG
* * *
87408813 ACCTTTAAAAAAGGTTGCGATAGACCTAGTC-AAGGCCAAC-CTTTGAAAAAGGTTGTG-ATAGA
1 ACCTTT-AAAAAGGTTGGGATAGA-CTTGTCTAAGG-CAACAC--TAAAAAAGGTTG-GAATAGA
* * * *
87408875 -CCTGTCT-AAGGCAACCTT-AAAAA-GGTTGGGATAGACC-AGCCTAAGATAACCTTTAAAAAA
60 TCTTGT-TAAAGACAACCTTAAAAAAGGGTTGGGATAGACCTA-TCTAAGACAACC-TTAAAAAA
* ** * *
87408935 AGTTGGGATAGACCATATCTAAGGCA
122 GGTTACGATAGACCTTATCTAAAGCA
* * * * * * *
87408961 ACATTTAAAAAAAGTTGCGATAAACCTTATCTAAGGCAAC-CTTTAAAAAAGATTGGGATAGAAT
1 ACCTTT-AAAAAGGTTGGGATAGA-CTTGTCTAAGGCAACAC--TAAAAAAGGTTGGAATAG-AT
* * * *
87409025 C--GTCTAAAG-CAACCTT-AAATA-GGTTGGTG-TAGACCTTGTCTAGGGCAACCTTTAAAAAA
61 CTTGT-TAAAGACAACCTTAAAAAAGGGTTGG-GATAGACC-TATCTAAGACAACC-TTAAAAAA
** *
87409084 GGTTGGGATAGACCTTATCTAAGGCA
122 GGTTACGATAGACCTTATCTAAAGCA
* * *
87409110 ACCTTTTAAAAATGTTGGGATAGACCTTGTCTAAGGCAACATTTAAAAAAGGTTGGGATAGATCT
1 ACC-TTTAAAAAGGTTGGGATAGA-CTTGTCTAAGGCAACA-CTAAAAAAGGTTGGAATAGATCT
* * * * *
87409175 TGTTTAAGACAACCTTAAAAAAGGGTTGGGATAGACTTGTTTAAGGCAACCTTAAAAAATGGTTA
63 TGTTAAAGACAACCTTAAAAAAGGGTTGGGATAGACCTATCTAAGACAACCTTAAAAAA-GGTTA
*
87409240 CGATAGA-CTTGTCTAAAGCA
127 CGATAGACCTTATCTAAAGCA
* **
87409260 ACC-TTAAAAAGGTTGGGATAGA-TTCGTCTAAGGTAAC-CTCCAAAAGGTTGGAATAGATCTTG
1 ACCTTTAAAAAGGTTGGGATAGACTT-GTCTAAGGCAACACTAAAAAAGGTTGGAATAGATCTTG
* * * * * **
87409322 TCTAAAG-CAACTTTTAGAAAA-GGTTGGGATTGACCTATCTAAGACAACGTT-AAAAATGTTGG
65 T-TAAAGACAAC-CTTAAAAAAGGGTTGGGATAGACCTATCTAAGACAACCTTAAAAAAGGTTAC
* *
87409384 GATAGACC-CATTTACAA-CA
128 GATAGACCTTATCTA-AAGCA
* * * * * * * *
87409403 ACC-TTAAAAAAGTTGAGATAGACCTTTTCTAAGGCAAC-TTAAAAAAAGTTGGGATA-AACTCG
1 ACCTTTAAAAAGGTTGGGATAGA-CTTGTCTAAGGCAACACTAAAAAAGGTTGGAATAGATCTTG
*
87409465 TCT-AAGGCAACCTTAAAAAAG
65 T-TAAAGACAACCTTAAAAAAG
87409486 TTAGGATAAA
Statistics
Matches: 433, Mismatches: 65, Indels: 59
0.78 0.12 0.11
Matches are distributed among these distances:
142 10 0.02
143 45 0.10
144 31 0.07
145 52 0.12
146 13 0.03
147 12 0.03
148 95 0.22
149 102 0.24
150 35 0.08
151 27 0.06
152 11 0.03
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (147 bp):
ACCTTTAAAAAGGTTGGGATAGACTTGTCTAAGGCAACACTAAAAAAGGTTGGAATAGATCTTGT
TAAAGACAACCTTAAAAAAGGGTTGGGATAGACCTATCTAAGACAACCTTAAAAAAGGTTACGAT
AGACCTTATCTAAAGCA
Found at i:87409527 original size:35 final size:35
Alignment explanation
Indices: 87409430--87409530 Score: 141
Period size: 35 Copynumber: 2.9 Consensus size: 35
87409420 ATAGACCTTT
* *
87409430 TCTAAGGC-AACTTAAAAAAAGTTGGGATAAACTCG
1 TCTAAGGCAAACTT-AAAAAAGTTAGGATAAACCCG
*
87409465 TCTAAGGCAACCTTAAAAAAGTTAGGATAAACCCG
1 TCTAAGGCAAACTTAAAAAAGTTAGGATAAACCCG
* *
87409500 TCTAAGGCAAACTTAAAAAGGTCAGGATAAA
1 TCTAAGGCAAACTTAAAAAAGTTAGGATAAA
87409531 TATTTGTCTC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
35 55 0.93
36 4 0.07
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.21
Consensus pattern (35 bp):
TCTAAGGCAAACTTAAAAAAGTTAGGATAAACCCG
Found at i:87421896 original size:23 final size:23
Alignment explanation
Indices: 87421866--87421929 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
87421856 GTGGCTGGAG
87421866 CAGGTGGTGGACGGCAGATGCAC
1 CAGGTGGTGGACGGCAGATGCAC
87421889 CAGGTGGTGGACGGCAGATGCAC
1 CAGGTGGTGGACGGCAGATGCAC
87421912 CA-GTGGCTGGA--GCAGATG
1 CAGGTGG-TGGACGGCAGATG
87421930 GTCGACGGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.17
22 4 0.10
23 29 0.73
ACGTcount: A:0.22, C:0.20, G:0.44, T:0.14
Consensus pattern (23 bp):
CAGGTGGTGGACGGCAGATGCAC
Found at i:87422923 original size:7 final size:7
Alignment explanation
Indices: 87422911--87422991 Score: 81
Period size: 7 Copynumber: 11.6 Consensus size: 7
87422901 TACAAAAACT
87422911 TAAACCC
1 TAAACCC
*
87422918 TAAACCT
1 TAAACCC
**
87422925 TAAACTA
1 TAAACCC
87422932 TAAACCC
1 TAAACCC
*
87422939 TAAACCT
1 TAAACCC
87422946 TAAACCC
1 TAAACCC
*
87422953 CAAACCC
1 TAAACCC
87422960 TAAACCC
1 TAAACCC
*
87422967 CAAACCC
1 TAAACCC
* * *
87422974 CAAATCT
1 TAAACCC
87422981 TAAACCC
1 TAAACCC
87422988 TAAA
1 TAAA
87422992 ACCAAAGAAA
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 59 1.00
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:87423643 original size:140 final size:140
Alignment explanation
Indices: 87423403--87424370 Score: 1148
Period size: 140 Copynumber: 7.0 Consensus size: 140
87423393 CATAGTCTTG
* * ** *
87423403 GACAAAACCGACTCTTATTTAAAAGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * * *
87423468 TGGCC-AAAGTGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAATGTGTAG
66 TGGCCAAAAAT-TATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAG
* * * *
87423532 GCATAGTATTC
130 GCTTAGGACTA
* * * *
87423543 GACAAAGCCGACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * * *
87423608 TGACCAAAAATTATGTCGACAAGTCTATCCCAACACTTAGGAAAATGT-----C------GT---
66 TGGCCAAAAATTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAGG
*
87423659 CTTAGGACTG
131 CTTAGGACTA
* * *
87423669 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* *
87423734 TGGCCAAAGCA-TATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCA
66 TGGCCAAA-AATTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGT-A
* *
87423798 -TCTTAGGACTG
129 GGCTTAGGACTA
* * *
87423809 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * *
87423874 TGGCCAAAGCATT-TGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCG
66 TGGCCAAA-AATTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAG
*
87423938 TCTTAGGACTA
130 GCTTAGGACTA
* * *
87423949 GACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
* *
87424014 TTGGCCAAAGCA-TATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTC
65 TTGGCCAAA-AATTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTA
*
87424078 GTCTTAGGACTA
129 GGCTTAGGACTA
* * * **
87424090 CACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTCATTTAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
* *** * *
87424155 TTGGCGAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCACCCCAAAAGTGTCG
65 TTGGCCAAAAATTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAG
*
87424220 CCTTAGGACTA
130 GCTTAGGACTA
*
87424231 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAATG-G
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAA-GAG
* ** * * * * *
87424295 TTGGCTAAAACGTATATTGGCCAGTCTATCCCAACACTTAAGAAAGTGTCGCCACAAAAGTGTCG
65 TTGGCCAAAAATTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAG
*
87424360 TCTTAGGACTA
130 GCTTAGGACTA
87424371 TTTTGTTGTA
Statistics
Matches: 751, Mismatches: 55, Indels: 44
0.88 0.06 0.05
Matches are distributed among these distances:
126 105 0.14
127 1 0.00
129 2 0.00
131 1 0.00
135 1 0.00
137 2 0.00
140 369 0.49
141 270 0.36
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (140 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
TGGCCAAAAATTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAGG
CTTAGGACTA
Found at i:87423751 original size:266 final size:270
Alignment explanation
Indices: 87423277--87424367 Score: 1229
Period size: 266 Copynumber: 4.0 Consensus size: 270
87423267 CATACTATTG
** * * * * * *
87423277 GACAAAGTTAACTCTTATTTAAGTGTTGCCTTAGGCATGCATATACCATCTCTTATACAAAGACT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * * * *
87423342 TGGCCAAAGCA-TATGTTGACAAGTCTATCCCAACACTT-AG-G-AAAGTGTTGGCATA-GTCTT
66 TGGCCAAAGCATTATGTTGACAAGTCTATCCCAACACTTAAGTGCAAAATGTCGTCTTAGGAC-T
* * * ** *
87423402 GGACAAAACCGACTCTTATTTAAAAGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAG
130 AGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
** * * *
87423467 TTGGCCAAAGTGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAATGTGTAG
195 TTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAG
* * *
87423532 GCATAGTATTC
260 TCTTAGGATTC
* * * *
87423543 GACAAAGCCGACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * * *
87423608 TGACCAAA-AATTATGTCGACAAGTCTATCCCAACACTT-AG-G-AAAATGTCGTCTTAGGACTG
66 TGGCCAAAGCATTATGTTGACAAGTCTATCCCAACACTTAAGTGCAAAATGTCGTCTTAGGACTA
* * *
87423669 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGT
131 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
*
87423734 TGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCA-
196 TGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGT-AG
* *
87423798 TCTTAGGACTG
260 TCTTAGGATTC
* * *
87423809 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
*
87423874 TGGCCAAAGCATT-TGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCG
66 TGGCCAAAGCATTATGTTGACAAGTCTATCCCAACACTT----AA--GT-G---C-AAAATGTCG
* *
87423938 TCTTAGGACTAGACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCT
120 TCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCT
*
87424003 TATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCC
184 TATACAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCC
* *
87424068 CAAAAGTGTCGTCTTAGGACTAC
249 CAAAAGTGTAGTCTTAGGA-TTC
* * **
87424091 -ACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTCATTTAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
* * *
87424155 TTGGCGAAAGC-GTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCACCCCAAAAGTGTC
65 TTGGCCAAAGCATTATGTTGACAAGTCTATCCCAACACTT----AAGTG------CAAAA-TGTC
* *
87424219 GCCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCT
119 GTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCT
* * * * * *
87424284 TATACAAATG-GTTGGCTAAAACGTATATTGGCCAGTCTATCCCAACACTTAAGAAAGTGTCGCC
184 TATACAAA-GAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCC
* *
87424348 ACAAAAGTGTCGTCTTAGGA
248 CCAAAAGTGTAGTCTTAGGA
87424368 CTATTTTGTT
Statistics
Matches: 723, Mismatches: 74, Indels: 41
0.86 0.09 0.05
Matches are distributed among these distances:
265 1 0.00
266 310 0.43
267 6 0.01
271 1 0.00
273 1 0.00
275 1 0.00
279 1 0.00
280 24 0.03
281 259 0.36
282 119 0.16
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (270 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
TGGCCAAAGCATTATGTTGACAAGTCTATCCCAACACTTAAGTGCAAAATGTCGTCTTAGGACTA
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
TGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTAGT
CTTAGGATTC
Found at i:87424025 original size:141 final size:140
Alignment explanation
Indices: 87423649--87424370 Score: 1149
Period size: 140 Copynumber: 5.1 Consensus size: 140
87423639 AACACTTAGG
*
87423649 AAAATGTCGTCTTAGGACTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
1 AAAATGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
87423714 GCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAG
66 GCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAG
87423779 TGTCGCCCCA
131 TGTCGCCCCA
* *
87423789 AAAATGTCATCTTAGGACTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
1 AAAATGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
*
87423854 GCAACCCTTATGCAAAGAGTTGGCCAAAGCATTTGTTGGCAAGTCTATCCCAACACTTAGGAAAG
66 GCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAG
87423919 TGTCGCCCCA
131 TGTCGCCCCA
87423929 AAAATGTCGTCTTAGGACTAGACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATAT
1 AAAATGTCGTCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATAT
87423994 CGCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAA
65 CGCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAA
87424059 GTGTCGCCCCA
130 GTGTCGCCCCA
* * * *
87424070 AAAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATAT
1 AAAATGTCGTCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATAT
* * ** * *
87424135 CCCAACCCTCATTTAAAGAGTTGGCGAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAA
65 CGCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAA
*
87424200 GTGTCACCCCA
130 GTGTCGCCCCA
* * * *
87424211 AAAGTGTCGCCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
1 AAAATGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
* * * * * * * *
87424276 CCAACCCTTATACAAATG-GTTGGCTAAAACGTATATTGGCCAGTCTATCCCAACACTTAAGAAA
66 GCAACCCTTATGCAAA-GAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAA
*
87424340 GTGTCGCCACA
130 GTGTCGCCCCA
*
87424351 AAAGTGTCGTCTTAGGACTA
1 AAAATGTCGTCTTAGGACTA
87424371 TTTTGTTGTA
Statistics
Matches: 549, Mismatches: 31, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
140 281 0.51
141 268 0.49
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (140 bp):
AAAATGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
GCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAG
TGTCGCCCCA
Found at i:87424240 original size:281 final size:279
Alignment explanation
Indices: 87423649--87424370 Score: 1149
Period size: 281 Copynumber: 2.6 Consensus size: 279
87423639 AACACTTAGG
*
87423649 AAAATGTCGTCTTAGGACTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
1 AAAATGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
87423714 GCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAG
66 GCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAG
* * ** * *
87423779 TGTCGCCCCAAAAATGTCATCTTAGGACTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGG
131 TGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAGCCAACTCTTATTCAAGCGTTGCCTTAGG
* * *
87423844 CATACATATCGCAACCCTTATGCAAAGAGTTGGCCAAAGCATTTGTTGGCAAGTCTATCCCAACA
196 CATACATATCCCAACCCTCATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACA
*
87423909 CTTAGGAAAGTGTCGCCCC
261 CTTAGGAAAGTGTCACCCC
87423928 AAAAATGTCGTCTTAGGACTAGACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATA
1 -AAAATGTCGTCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATA
87423993 TCGCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAA
64 TCGCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAA
87424058 AGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTT
129 AGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACAC-AAAGCCAACTCTTATTCAAGCGTTGCCTT
** * *
87424123 AGGCATACATATCCCAACCCTCATTTAAAGAGTTGGCGAAAGCGTATGTTGGCAAGTCTATCCCA
193 AGGCATACATATCCCAACCCTCATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCA
87424188 ACACTTAGGAAAGTGTCACCCC
258 ACACTTAGGAAAGTGTCACCCC
* * *
87424210 AAAAGTGTCGCCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATAT
1 AAAA-TGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATAT
* * * * * * * *
87424275 CCCAACCCTTATACAAATG-GTTGGCTAAAACGTATATTGGCCAGTCTATCCCAACACTTAAGAA
65 CGCAACCCTTATGCAAA-GAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAA
*
87424339 AGTGTCGCCACAAAAGTGTCGTCTTAGGACTA
129 AGTGTCGCCCCAAAAGTGTCGTCTTAGGACTA
87424371 TTTTGTTGTA
Statistics
Matches: 411, Mismatches: 27, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
280 22 0.05
281 264 0.64
282 125 0.30
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (279 bp):
AAAATGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATC
GCAACCCTTATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAG
TGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAGCCAACTCTTATTCAAGCGTTGCCTTAGG
CATACATATCCCAACCCTCATGCAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACA
CTTAGGAAAGTGTCACCCC
Found at i:87424624 original size:11 final size:11
Alignment explanation
Indices: 87424608--87424632 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
87424598 ATGTCTAGAA
87424608 TTCTCTTCATT
1 TTCTCTTCATT
87424619 TTCTCTTCATT
1 TTCTCTTCATT
87424630 TTC
1 TTC
87424633 ATCAGCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:87427365 original size:28 final size:28
Alignment explanation
Indices: 87427334--87427421 Score: 65
Period size: 28 Copynumber: 3.1 Consensus size: 28
87427324 GATCAAGTCT
87427334 TGGTGACTTGAAAATGATTATATTCATG
1 TGGTGACTTGAAAATGATTATATTCATG
* * * * * *
87427362 TGGTTAAGTTTTAAAGTTGATCA-AGTC-T-
1 TGG-TGA-CTTGAAA-ATGATTATATTCATG
*
87427390 TGGTGACTCGAAAATGATTATATTCATG
1 TGGTGACTTGAAAATGATTATATTCATG
87427418 TGGT
1 TGGT
87427422 TAAGTATGGT
Statistics
Matches: 41, Mismatches: 13, Indels: 12
0.62 0.20 0.18
Matches are distributed among these distances:
25 5 0.12
26 7 0.17
27 3 0.07
28 10 0.24
29 3 0.07
30 8 0.20
31 5 0.12
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.40
Consensus pattern (28 bp):
TGGTGACTTGAAAATGATTATATTCATG
Found at i:87427381 original size:56 final size:56
Alignment explanation
Indices: 87427311--87427426 Score: 214
Period size: 56 Copynumber: 2.1 Consensus size: 56
87427301 AAGGTCAGAA
* *
87427311 AAGTTTTAATGTTGATCAAGTCTTGGTGACTTGAAAATGATTATATTCATGTGGTT
1 AAGTTTTAAAGTTGATCAAGTCTTGGTGACTCGAAAATGATTATATTCATGTGGTT
87427367 AAGTTTTAAAGTTGATCAAGTCTTGGTGACTCGAAAATGATTATATTCATGTGGTT
1 AAGTTTTAAAGTTGATCAAGTCTTGGTGACTCGAAAATGATTATATTCATGTGGTT
87427423 AAGT
1 AAGT
87427427 ATGGTAATGC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (56 bp):
AAGTTTTAAAGTTGATCAAGTCTTGGTGACTCGAAAATGATTATATTCATGTGGTT
Found at i:87430336 original size:39 final size:39
Alignment explanation
Indices: 87430282--87430424 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
87430272 GAATGTTCGA
87430282 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
87430321 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
87430360 ATGATAT-CGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
87430398 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
87430425 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 35 0.38
39 49 0.53
40 9 0.10
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:87430375 original size:77 final size:79
Alignment explanation
Indices: 87430283--87430438 Score: 253
Period size: 77 Copynumber: 2.0 Consensus size: 79
87430273 AATGTTCGAG
87430283 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
87430347 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
87430361 TGATAT-CGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
87430425 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
87430439 CCATAACCGG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
77 46 0.64
78 26 0.36
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:87433038 original size:40 final size:40
Alignment explanation
Indices: 87432993--87433159 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
87432983 CGGAATATAA
87432993 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
87433033 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
87433073 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
87433113 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
87433152 CCGGATAT
1 CCGGATAT
87433160 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:87433143 original size:80 final size:79
Alignment explanation
Indices: 87433009--87433157 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
87432999 ATAACCACGT
*
87433009 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
87433074 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
87433089 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
87433152 CCGGAT
64 CCGGAT
87433158 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:87440993 original size:40 final size:39
Alignment explanation
Indices: 87440948--87441077 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
87440938 CGGAACATAA
87440948 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
87440988 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
87441028 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
87441068 CCGGATATAA
1 CCGGATATAA
87441078 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:87441092 original size:40 final size:40
Alignment explanation
Indices: 87440964--87441115 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
87440954 ATAACCATGT
* * *
87440964 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
87441004 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
87441044 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
87441084 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
87441116 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:87441098 original size:80 final size:80
Alignment explanation
Indices: 87440964--87441113 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
87440954 ATAACCATGT
*
87440964 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
87441028 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
87441044 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
87441107 CCCGGAT
64 CCCGGAT
87441114 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:87445578 original size:28 final size:28
Alignment explanation
Indices: 87445537--87445603 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
87445527 TATACAGTAT
* *
87445537 CAGT-ACAGTCTGGGCC-ATAGCCCTATA
1 CAGTAACAGTGTGGGCCTA-AGCCCAATA
87445564 CAGTAACAGTGTGGGCCTAAGCCCAATA
1 CAGTAACAGTGTGGGCCTAAGCCCAATA
87445592 CAGTAACAGTGT
1 CAGTAACAGTGT
87445604 CAATAACAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 4 0.11
28 31 0.86
29 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTAAGCCCAATA
Found at i:87445756 original size:26 final size:26
Alignment explanation
Indices: 87445724--87445775 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
87445714 ACACCAATAT
* *
87445724 TGCAGCAAAGCTGCCAGTAATAGTAA
1 TGCAGCAAAGCTGCCAGCAACAGTAA
*
87445750 TGCAGCATAGCTGCCAGCAACAGTAA
1 TGCAGCAAAGCTGCCAGCAACAGTAA
87445776 ATGTGGCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
TGCAGCAAAGCTGCCAGCAACAGTAA
Found at i:87446090 original size:27 final size:27
Alignment explanation
Indices: 87446074--87446296 Score: 110
Period size: 27 Copynumber: 8.3 Consensus size: 27
87446064 TATCCTACAT
87446074 GGGTATTTCGGTAATTTTACACTACGA
1 GGGTATTTCGGTAATTTTACACTACGA
*
87446101 GGGTATTTTGGTAATTTTACGA--ACTGA
1 GGGTATTTCGGTAATTTTAC-ACTAC-GA
*
87446128 GGGTATCTT-GGTAATTTTACAAATTA-G-
1 GGGTAT-TTCGGTAATTTTAC--ACTACGA
*** *
87446155 GGGTATTTTAATAATTTTACA-AATC-A
1 GGGTATTTCGGTAATTTTACACTA-CGA
* * *
87446181 GGGGTATTTCAGTAATTTTATA-AATCGA
1 -GGGTATTTCGGTAATTTTACACTA-CGA
***
87446209 GGGTATTTTTATAATTTTACAAACTA-G-
1 GGGTATTTCGGTAATTTTAC--ACTACGA
* *
87446236 GGGTATTACGGTAATTTTACA-AACTGA
1 GGGTATTTCGGTAATTTTACACTAC-GA
* *
87446263 GGGTATTTTGGTAATTTTACA-AATCGA
1 GGGTATTTCGGTAATTTTACACTA-CGA
87446290 GGGTATT
1 GGGTATT
87446297 AACAACCCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 38
0.73 0.09 0.18
Matches are distributed among these distances:
24 2 0.01
25 2 0.01
26 5 0.03
27 137 0.87
28 8 0.05
29 1 0.01
30 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACACTACGA
Found at i:87446132 original size:54 final size:53
Alignment explanation
Indices: 87446074--87446296 Score: 238
Period size: 54 Copynumber: 4.1 Consensus size: 53
87446064 TATCCTACAT
* * *
87446074 GGGTATTTCGGTAATTTTACACTACGAGGGTATTTTGGTAATTTTACGAACTGA-
1 GGGTATTTCGGTAATTTTACA-AACGAGGGTATTTTGATAATTTTAC-AAATGAG
** * *
87446128 GGGTATCTT-GGTAATTTTACAAATTAGGGGTATTTTAATAATTTTACAAATCAG
1 GGGTAT-TTCGGTAATTTTACAAACGA-GGGTATTTTGATAATTTTACAAATGAG
* * *
87446182 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTTATAATTTTACAAACT-AG
1 GGGTATTTCGGTAATTTTACAAA-CGAGGGTATTTTGATAATTTTACAAA-TGAG
* *
87446236 GGGTATTACGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAATCGA-
1 GGGTATTTCGGTAATTTTACAAAC-GAGGGTATTTTGATAATTTTACAAAT-GAG
87446290 GGGTATT
1 GGGTATT
87446297 AACAACCCAA
Statistics
Matches: 143, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
53 10 0.07
54 128 0.90
55 5 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACAAACGAGGGTATTTTGATAATTTTACAAATGAG
Found at i:87446296 original size:81 final size:81
Alignment explanation
Indices: 87446074--87446296 Score: 272
Period size: 81 Copynumber: 2.8 Consensus size: 81
87446064 TATCCTACAT
* * *
87446074 GGGTATTTCGGTAATTTTACACTAC-GAGGGTATTTTGGTAATTTTACGAA-CTGAGGGTATCTT
1 GGGTATTTCGGTAATTTTACA-AACTGAGGGTATTTTGGTAATTTTACAAATC-GAGGGTATTTT
* *
87446137 GGTAATTTTACAAATTAG
64 GATAATTTTACAAACTAG
*** * ** * *
87446155 GGGTATTTTAATAATTTTACAAA-TCAGGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTT
1 GGGTATTTCGGTAATTTTACAAACTGA-GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTG
87446219 ATAATTTTACAAACTAG
65 ATAATTTTACAAACTAG
*
87446236 GGGTATTACGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATT
1 GGGTATTTCGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATT
87446297 AACAACCCAA
Statistics
Matches: 117, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
80 2 0.02
81 112 0.96
82 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGA
TAATTTTACAAACTAG
Found at i:87453561 original size:24 final size:24
Alignment explanation
Indices: 87453520--87453580 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
87453510 AAAAACTAAG
* * **
87453520 TGGCACTATGTTTGCGAGATTACA
1 TGGCACTATGTGTACGAGAAAACA
* *
87453544 TGGCACTGTGTGTACGAGAAAACG
1 TGGCACTATGTGTACGAGAAAACA
87453568 TGGCACTATGTGT
1 TGGCACTATGTGT
87453581 GCGAATAAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (24 bp):
TGGCACTATGTGTACGAGAAAACA
Found at i:87457628 original size:44 final size:43
Alignment explanation
Indices: 87457552--87457705 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 43
87457542 CAATATGTGT
* ** *
87457552 TTTC-GTGTAAGACAATGTCTGGGATGTTGGCATCG-ACTTATGA
1 TTTCAGTGTAAGACCATGTCTGGGACATCGGCATCGTA-TT-TGA
87457595 TTT-ATGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
1 TTTCA-GTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
* * *
87457638 TTTCA-TGTAAGACCCTGTCTGGGATAGT-GGCATCAATATTTGA
1 TTTCAGTGTAAGACCATGTCTGGGACA-TCGGCATC-GTATTTGA
* *
87457681 TTACA-TGTAAGACCACGTCTGGGAC
1 TTTCAGTGTAAGACCATGTCTGGGAC
87457706 GTTGGCATTG
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
42 25 0.27
43 38 0.40
44 30 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TTTCAGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
Found at i:87466347 original size:28 final size:28
Alignment explanation
Indices: 87466282--87466382 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
87466272 ATAGTGAATC
*
87466282 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
87466311 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
87466339 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
87466369 CGCACACTTAGTGC
1 CGCACACTTAGTGC
87466383 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87474375 original size:20 final size:20
Alignment explanation
Indices: 87474350--87474388 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
87474340 TGTATTTGTA
* *
87474350 AAATTTTAGAATTTTTCATC
1 AAATTTTACAACTTTTCATC
87474370 AAATTTTACAACTTTTCAT
1 AAATTTTACAACTTTTCAT
87474389 TTTAGTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATC
Found at i:87479337 original size:2 final size:2
Alignment explanation
Indices: 87479330--87479362 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
87479320 TCATGACATG
87479330 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
87479363 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87488876 original size:24 final size:24
Alignment explanation
Indices: 87488849--87488932 Score: 141
Period size: 24 Copynumber: 3.5 Consensus size: 24
87488839 CTATCAGGAG
*
87488849 AGGATTTAGGAGTTGATAAGGAAT
1 AGGATTTAGGAGTTGATAAGGGAT
87488873 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
* *
87488897 AGGATTTAGGAGCTGATAAGGGAG
1 AGGATTTAGGAGTTGATAAGGGAT
87488921 AGGATTTAGGAG
1 AGGATTTAGGAG
87488933 CTAATTAGGG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:87488933 original size:24 final size:24
Alignment explanation
Indices: 87488845--87488945 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
87488835 AACTCTATCA
*
87488845 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
87488869 GAATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
87488893 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
87488917 GGAGAGGATTTAGGAGCTAATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
87488941 GGAGA
1 GGAGA
87488946 ACGGTGTGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:87490204 original size:27 final size:27
Alignment explanation
Indices: 87490126--87490205 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
87490116 AGGAAGCGTC
* **
87490126 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
87490153 CTGGTGGCACTACCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
87490180 CTGGTGGCTCTGCCACAATTATCTGT
1 CTGGTGGCTCTGCCACAATTATCTGT
87490206 ATCGAGTGGG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.05
27 40 0.91
28 2 0.05
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:87490868 original size:27 final size:27
Alignment explanation
Indices: 87490838--87490903 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
87490828 GGTGGCTATG
87490838 CCACAATTATCTAATCTGGTGGCACTA
1 CCACAATTATCTAATCTGGTGGCACTA
* ** * *
87490865 CCAC-ATATATTTGTTCTGGTGGCTCTG
1 CCACAAT-TATCTAATCTGGTGGCACTA
87490892 CCACAATTATCT
1 CCACAATTATCT
87490904 GTATCGAGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 2 0.06
27 27 0.87
28 2 0.06
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (27 bp):
CCACAATTATCTAATCTGGTGGCACTA
Found at i:87491254 original size:707 final size:707
Alignment explanation
Indices: 87489499--87491264 Score: 3197
Period size: 701 Copynumber: 2.5 Consensus size: 707
87489489 CTGCATCAGA
87489499 ATCGAGTGGGGATTAAGAGGTATTGTTGACGGAAGGAATCGGTGTGTGATCTAGAGGCTGCTGAT
1 ATCGAGTGGGGATT-AGAGGTATTGTTGACGGAAGGAATCGGTGTGTGATCTAGAGGCTGCTGAT
* * *
87489564 CAAGGGCTTGGACAAGGGGAACAATGGGATCTAACTCTAGTTGCAAATTCTGGCAAAGGTAGTAC
65 CAAGGGCTTGGACAAGGGGAACAACGGGATCTAACTCTAGTCGCAAATTCTGGCAAAGGTAGTTC
*
87489629 GTGTGTGGATCTCGTCAACGAATCGTCGC-AACAGGTGTGTAACTGACACCATCTTATAGACTAG
130 GTGTGTGGATCTCGTCAACGAATCGTCGCAAACAGGTGTGTAACTGACACCATCTTATAAACTAG
* * * *
87489693 ATCGGCAAAAGCCGAAAAGCCGAAATACTGAAAAGTCGGCATTCTAAGAGCATGCAAGTGTGTGA
195 ATTGGCAAAAGCCGAAAAGCCGAAATGCTGAAAAGTCGGCATTCTAAGAGCATGCGAGTGTGCGA
* *
87489758 ATGCTCGTGAGATTAGTAGTTTGATGTATATTGTAGATTAATGTGATAAGACTATAGAGTGCACG
260 ATGCTCGTGAGATTAGTAGTTTGATGTATATGGTAGATTAAAGTGATAAGACTATAGAGTGCACG
87489823 ATTCTGTGCATTTTGATGTTTTTGGGTTTAATGGGCCAACGGGCCCAATTCGGTAAGAAAATGTG
325 ATTCTGTGCATTTTGATGTTTTTGGGTTTAATGGGCCAACGGGCCCAATTCGGTAAGAAAATGTG
87489888 GTAAGTGTTCCTGGTCGTATGAAAATGGCTATGCTATGCATGAAAACCCTAAGAATAGTTAAATT
390 GTAAGTGTTCCTGGTCGTATGAAAATGGCTATGCTATGCATGAAAACCCTAAGAATAGTTAAATT
87489953 ACTTGAATACCCCTATGTATGGAAATTACTGATATACCCCTAGGTGTAAAATTACCATTATACCC
455 ACTTGAATACCCCTATGTATGGAAATTACTGATATACCCCTAGGTGTAAAATTACCATTATACCC
87490018 CTAGGGTTAATTTTGACTGAAAAGCATGATGATTTAATTCTGTATGATGTATGCCATGATTGTAT
520 CTAGGGTTAATTTTGACTGAAAAGCATGATGATTTAATTCTGTATGATGTATGCCATGATTGTAT
87490083 ATTTGTTGCATGGGGACATGGGTTATATTATGGAGGAAGCGTCCTGGTGGCTATGCCACAATTAT
585 ATTTGTTGCATGGGGACATGGGTTATATTATGGAGGAAGCGTCCTGGTGGCTATGCCACAATTAT
87490148 CTAATCTGGTGGCACTACCACATATATCTGTTCTGGTGGCTCTGCCACAATTATCTGT
650 CTAATCTGGTGGCACTACCACATATATCTGTTCTGGTGGCTCTGCCACAATTATCTGT
* *
87490206 ATCGAGTGGGGATTA-A-G-A--GGT-ACGGAAGGAGTCGGTGTGTGATCTAGAGGCTGCTGATC
1 ATCGAGTGGGGATTAGAGGTATTGTTGACGGAAGGAATCGGTGTGTGATCTAGAGGCTGCTGATC
87490265 AAGGGCTTGGACAAGGGGAACAACGGGATCTAACTCTAGTCGCAAATTCTGGCAAAGGTAGTTCG
66 AAGGGCTTGGACAAGGGGAACAACGGGATCTAACTCTAGTCGCAAATTCTGGCAAAGGTAGTTCG
* * *
87490330 TGTGTGGATCTCATCAACGAATCGTCGTAAACAGGTGTGTAACTAACACCATCTTATAAACTAGA
131 TGTGTGGATCTCGTCAACGAATCGTCGCAAACAGGTGTGTAACTGACACCATCTTATAAACTAGA
* * * *
87490395 TTGGCAAAAGCCGAAAAGTCGAAATGCCGAAAAGTCGGCATTCTAAGAGCATGTGAGTGTGCGGA
196 TTGGCAAAAGCCGAAAAGCCGAAATGCTGAAAAGTCGGCATTCTAAGAGCATGCGAGTGTGCGAA
87490460 TGCTCGTGAGATTAGTAGTTTGATGTATATGGTAGATTAAAGTGATAAGACTATAGAGTGCACGA
261 TGCTCGTGAGATTAGTAGTTTGATGTATATGGTAGATTAAAGTGATAAGACTATAGAGTGCACGA
87490525 TTCTGTGCATTTTGATGTTTTTGGGTTTAATGGGCCAACGGGCCCAATTCGGTAAGAAAATGTGG
326 TTCTGTGCATTTTGATGTTTTTGGGTTTAATGGGCCAACGGGCCCAATTCGGTAAGAAAATGTGG
87490590 TAAGTGTTCCTGGTCGTATGAAAATGGCTATGCTATGCATGAAAACCCTAAGAATAGTTAAATTA
391 TAAGTGTTCCTGGTCGTATGAAAATGGCTATGCTATGCATGAAAACCCTAAGAATAGTTAAATTA
*
87490655 CTTGAATACCCCTATGTATGGAAATTACTGATATACCCTTAGGTGTAAAATTACCATTATACCCC
456 CTTGAATACCCCTATGTATGGAAATTACTGATATACCCCTAGGTGTAAAATTACCATTATACCCC
87490720 TAGGGTTAATTTTGACTGAAAAGCATGATGATTTAATTCTGTATGATGTATGCCATGATTGTATA
521 TAGGGTTAATTTTGACTGAAAAGCATGATGATTTAATTCTGTATGATGTATGCCATGATTGTATA
87490785 TTTGTTGCAT-GGGACATGGGTTATATTATGGAGGAAGCGTCCTGGTGGCTATGCCACAATTATC
586 TTTGTTGCATGGGGACATGGGTTATATTATGGAGGAAGCGTCCTGGTGGCTATGCCACAATTATC
*
87490849 TAATCTGGTGGCACTACCACATATATTTGTTCTGGTGGCTCTGCCACAATTATCTGT
651 TAATCTGGTGGCACTACCACATATATCTGTTCTGGTGGCTCTGCCACAATTATCTGT
87490906 ATCGAGTGGGGATTGAGAGGTATTGTTGACGGAAGGAATCGGTGTGTGATCTAGAGGCTGCTGAT
1 ATCGAGTGGGGATT-AGAGGTATTGTTGACGGAAGGAATCGGTGTGTGATCTAGAGGCTGCTGAT
* *
87490971 CAAGGGCTTGGACAAGGGGAACAACGAGATCTAACTTTAGTCGCAAATTCTGGCAAAGGTAGTTC
65 CAAGGGCTTGGACAAGGGGAACAACGGGATCTAACTCTAGTCGCAAATTCTGGCAAAGGTAGTTC
* *
87491036 GTGTGTGGATCTCGTCAACGAATCGTTGCAAATAGGTGTGTAACTGACACCATCTTATAAACTAG
130 GTGTGTGGATCTCGTCAACGAATCGTCGCAAACAGGTGTGTAACTGACACCATCTTATAAACTAG
87491101 ATTGGCAAAAGCCGAAAAGCCGAAATGCTGAAAAGTCGGCATTCTAAGAGCATGCGAGTGTGCGA
195 ATTGGCAAAAGCCGAAAAGCCGAAATGCTGAAAAGTCGGCATTCTAAGAGCATGCGAGTGTGCGA
* *
87491166 ATGCTCGTGAGATTAGTAGTTTGATGTATACGGTAGATTAAAGTGATAAGACTGTAGAGTGCACG
260 ATGCTCGTGAGATTAGTAGTTTGATGTATATGGTAGATTAAAGTGATAAGACTATAGAGTGCACG
* *
87491231 ATTCTGTTCATTTCGATGTTTTTGGGTTTAATGG
325 ATTCTGTGCATTTTGATGTTTTTGGGTTTAATGG
87491265 CTATGCCACA
Statistics
Matches: 1013, Mismatches: 38, Indels: 16
0.95 0.04 0.01
Matches are distributed among these distances:
700 249 0.25
701 426 0.42
702 1 0.00
703 2 0.00
704 2 0.00
705 1 0.00
706 3 0.00
707 329 0.32
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (707 bp):
ATCGAGTGGGGATTAGAGGTATTGTTGACGGAAGGAATCGGTGTGTGATCTAGAGGCTGCTGATC
AAGGGCTTGGACAAGGGGAACAACGGGATCTAACTCTAGTCGCAAATTCTGGCAAAGGTAGTTCG
TGTGTGGATCTCGTCAACGAATCGTCGCAAACAGGTGTGTAACTGACACCATCTTATAAACTAGA
TTGGCAAAAGCCGAAAAGCCGAAATGCTGAAAAGTCGGCATTCTAAGAGCATGCGAGTGTGCGAA
TGCTCGTGAGATTAGTAGTTTGATGTATATGGTAGATTAAAGTGATAAGACTATAGAGTGCACGA
TTCTGTGCATTTTGATGTTTTTGGGTTTAATGGGCCAACGGGCCCAATTCGGTAAGAAAATGTGG
TAAGTGTTCCTGGTCGTATGAAAATGGCTATGCTATGCATGAAAACCCTAAGAATAGTTAAATTA
CTTGAATACCCCTATGTATGGAAATTACTGATATACCCCTAGGTGTAAAATTACCATTATACCCC
TAGGGTTAATTTTGACTGAAAAGCATGATGATTTAATTCTGTATGATGTATGCCATGATTGTATA
TTTGTTGCATGGGGACATGGGTTATATTATGGAGGAAGCGTCCTGGTGGCTATGCCACAATTATC
TAATCTGGTGGCACTACCACATATATCTGTTCTGGTGGCTCTGCCACAATTATCTGT
Found at i:87491344 original size:54 final size:53
Alignment explanation
Indices: 87491262--87491368 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 53
87491252 TTGGGTTTAA
*
87491262 TGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACAT-TATCTGTTCTGG
* * *
87491316 TGGCTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTTCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTTCTGG
87491369 CAGTCATGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 12 0.24
54 37 0.76
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
TGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTTCTGG
Found at i:87491365 original size:26 final size:26
Alignment explanation
Indices: 87491268--87491368 Score: 139
Period size: 27 Copynumber: 3.8 Consensus size: 26
87491258 TTAATGGCTA
*
87491268 TGCCACAATTATCTGATCTGGTGGCAC
1 TGCCAC-ATTATCTGTTCTGGTGGCAC
*
87491295 TGCCACATATATCTGTTCTGGTGGCTC
1 TGCCACAT-TATCTGTTCTGGTGGCAC
*
87491322 TGCCACAATTATCTGTTCTGGTGACAC
1 TGCCAC-ATTATCTGTTCTGGTGGCAC
*
87491349 TGTCACATTATCTGTTCTGG
1 TGCCACATTATCTGTTCTGG
87491369 CAGTCATGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
26 16 0.24
27 49 0.73
28 2 0.03
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
TGCCACATTATCTGTTCTGGTGGCAC
Found at i:87497841 original size:40 final size:40
Alignment explanation
Indices: 87497764--87497981 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
87497754 AAACCAAGTA
* *
87497764 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
87497803 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
87497843 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
87497883 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
87497923 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
87497963 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
87497982 TTATCATCCG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 153 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:87499013 original size:35 final size:35
Alignment explanation
Indices: 87498934--87499005 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
87498924 TTCCTTATGC
**
87498934 CCAACCAAAGACCACATTCGGCACTTTCATCCATTAT
1 CCAACC-AA-ACCACATTCGGCACTTTCATCCACCAT
87498971 CCAACCAAACCACATTCGGCACTTTCATCCACCAT
1 CCAACCAAACCACATTCGGCACTTTCATCCACCAT
87499006 TCTACCAAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 25 0.76
36 2 0.06
37 6 0.18
ACGTcount: A:0.32, C:0.39, G:0.07, T:0.22
Consensus pattern (35 bp):
CCAACCAAACCACATTCGGCACTTTCATCCACCAT
Found at i:87505218 original size:31 final size:30
Alignment explanation
Indices: 87505173--87505234 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 30
87505163 TCCAGAATCG
87505173 CTCTAGCCCTTTTCACGAAAACTTAAACAT
1 CTCTAGCCCTTTTCACGAAAACTTAAACAT
*
87505203 CTCTGGCCCTGTTTCACGAAAACTTAAACAT
1 CTCTAGCCCT-TTTCACGAAAACTTAAACAT
87505234 C
1 C
87505235 CCTTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.29
Consensus pattern (30 bp):
CTCTAGCCCTTTTCACGAAAACTTAAACAT
Found at i:87506161 original size:40 final size:40
Alignment explanation
Indices: 87506084--87506300 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
87506074 AAACCAAGTA
* *
87506084 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
87506123 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
87506163 CCTTC-GGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
87506202 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
87506242 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
87506282 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
87506301 TTATCATCCG
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 52 0.31
40 114 0.69
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:87506215 original size:79 final size:79
Alignment explanation
Indices: 87506084--87506304 Score: 331
Period size: 79 Copynumber: 2.8 Consensus size: 79
87506074 AAACCAAGTA
** *
87506084 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACCTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
87506148 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
87506163 CCTTC-GGACCTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACCTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
87506227 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
87506242 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACCTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
87506305 CATCCGGATA
Statistics
Matches: 130, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
78 7 0.05
79 72 0.55
80 51 0.39
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACCTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:87509459 original size:24 final size:24
Alignment explanation
Indices: 87509360--87509460 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
87509350 AAGTCTGTCA
*
87509360 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
87509384 GGATAGGATTTACGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
87509408 GGATAGGATTTAGAAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
87509432 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
87509456 GGAGA
1 GGAGA
87509461 ACGGTGTGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.34, C:0.03, G:0.39, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:87510726 original size:54 final size:53
Alignment explanation
Indices: 87510644--87510749 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 53
87510634 AAGCGTCCTG
*
87510644 GTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATATGTTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACAT-TATATGTTCTA
* * * *
87510698 GTGGCTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTTCT
1 GTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATATGTTCT
87510750 GGCAGCCATG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 9 0.19
54 38 0.81
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (53 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATATGTTCTA
Found at i:87510747 original size:26 final size:26
Alignment explanation
Indices: 87510641--87510751 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
87510631 AGGAAGCGTC
*
87510641 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCAC-ATTATCTGTT
*
87510668 CTGGTGGCACTGCCACATATATATGTT
1 CTGGTGGCACTGCCACAT-TATCTGTT
* *
87510695 CTAGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
87510722 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
87510748 CTGG
1 CTGG
87510752 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 17 0.24
27 53 0.74
28 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:87520150 original size:13 final size:12
Alignment explanation
Indices: 87520137--87520176 Score: 57
Period size: 10 Copynumber: 3.4 Consensus size: 12
87520127 TGGTATGGAG
87520137 GGAGAGAAGAGA
1 GGAGAGAAGAGA
87520149 GGAGAAGAAGAGA
1 GGAG-AGAAGAGA
87520162 -GA-AGAAGAGA
1 GGAGAGAAGAGA
87520172 GGAGA
1 GGAGA
87520177 AGGGAAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 8 0.32
11 2 0.08
12 7 0.28
13 8 0.32
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (12 bp):
GGAGAGAAGAGA
Found at i:87520177 original size:13 final size:13
Alignment explanation
Indices: 87520137--87520178 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
87520127 TGGTATGGAG
87520137 GGAG-AGAAGAGA
1 GGAGAAGAAGAGA
87520149 GGAGAAG-A-AGA
1 GGAGAAGAAGAGA
87520160 -GAGAAGAAGAGA
1 GGAGAAGAAGAGA
87520172 GGAGAAG
1 GGAGAAG
87520179 GGAAAAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 6 0.23
11 4 0.15
12 8 0.31
13 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (13 bp):
GGAGAAGAAGAGA
Found at i:87530779 original size:29 final size:29
Alignment explanation
Indices: 87530717--87530819 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
87530707 GTGACGAGAT
* * *
87530717 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
87530746 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
87530775 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
87530804 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87530820 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:87538795 original size:29 final size:29
Alignment explanation
Indices: 87538733--87538835 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
87538723 GTGACGAGAT
* * *
87538733 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
87538762 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
87538791 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
87538820 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87538836 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:87554751 original size:48 final size:48
Alignment explanation
Indices: 87554677--87554902 Score: 207
Period size: 48 Copynumber: 4.8 Consensus size: 48
87554667 ACATGGTAGA
* * * * *
87554677 ATGCCAATGCCATAT-CTCGAATATGGTCTTACATAGGATCATATATCG
1 ATGCCAATGCCATGTCCTAG-ACATGGTCTTACATGGGATCACATATCG
* * * *
87554725 ATGCCAATGCCATGTCCTAGACATGGTCTTACGTTGGATCGTC-GATCG
1 ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC-ACATATCG
*
87554773 ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATAG
1 ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATCG
* * * ** *
87554821 ATGCCGAT---A-G-CCCAG-CTATGGTCTTACACGAAATTACATATCG
1 ATGCCAATGCCATGTCCTAGAC-ATGGTCTTACATGGGATCACATATCG
* *
87554864 ATGCCAATGCCATGCCCTAGACATGGTCTAACATGGGAT
1 ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGAT
87554903 TGTATATAAC
Statistics
Matches: 142, Mismatches: 26, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
42 1 0.01
43 32 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 100 0.70
49 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATCG
Found at i:87555107 original size:28 final size:28
Alignment explanation
Indices: 87555072--87555127 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
87555062 TAATATTGTA
87555072 ACGTTGCATTATTTACACACAAACTTAC
1 ACGTTGCATTATTTACACACAAACTTAC
87555100 ACGTTGCATTATTTACACACAAACTTAC
1 ACGTTGCATTATTTACACACAAACTTAC
87555128 CTTGGTACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (28 bp):
ACGTTGCATTATTTACACACAAACTTAC
Found at i:87556452 original size:29 final size:29
Alignment explanation
Indices: 87556398--87556481 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
87556388 TATGAGCATC
* *
87556398 TATGAAAAGGGACT-GTTAAGATCATCAAA
1 TATGAAAAGGGA-TGGTTTAGACCATCAAA
* *
87556427 TATGAAAAGGGATGGTTTTGACCATCGAA
1 TATGAAAAGGGATGGTTTAGACCATCAAA
*
87556456 TATGAAAATGGATGGTTTCA-ACCATC
1 TATGAAAAGGGATGGTTT-AGACCATC
87556482 GTTTAGCACA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 1 0.02
29 46 0.98
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (29 bp):
TATGAAAAGGGATGGTTTAGACCATCAAA
Found at i:87559077 original size:30 final size:30
Alignment explanation
Indices: 87559033--87559089 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
87559023 CACGAGCATT
87559033 GGGGCAAAAGTGCAAATATGTAAAAGTTTA
1 GGGGCAAAAGTGCAAATATGTAAAAGTTTA
*
87559063 GGGGTCAAAA-TGCAAATTTGTAAAAGT
1 GGGG-CAAAAGTGCAAATATGTAAAAGT
87559090 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.07, G:0.26, T:0.25
Consensus pattern (30 bp):
GGGGCAAAAGTGCAAATATGTAAAAGTTTA
Found at i:87559722 original size:43 final size:43
Alignment explanation
Indices: 87559559--87559716 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 43
87559549 GAATTAAGAA
** ** * *
87559559 ATCCGAGCTTGTTGAGTGGTCCGAGTTTGTGATATATGTGAGA
1 ATCCGAGCTCATTGAGTGGTCCGAGTTCATGATAGATGTGAGC
* * * * *
87559602 ATCCGAACTTATTGAGTGGCCCAAGTTCATGATATATGT-AGC
1 ATCCGAGCTCATTGAGTGGTCCGAGTTCATGATAGATGTGAGC
* * * *
87559644 ATCCAAGCTCATTGAGTGGTTCGAGTTCATTATGGATGTGAGC
1 ATCCGAGCTCATTGAGTGGTCCGAGTTCATGATAGATGTGAGC
*
87559687 ATCCGAGCTCGTTGAGTGGTCCGAGTTCAT
1 ATCCGAGCTCATTGAGTGGTCCGAGTTCAT
87559717 AATGGACGTG
Statistics
Matches: 95, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 32 0.34
43 63 0.66
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
ATCCGAGCTCATTGAGTGGTCCGAGTTCATGATAGATGTGAGC
Found at i:87559762 original size:51 final size:51
Alignment explanation
Indices: 87559686--87559785 Score: 146
Period size: 51 Copynumber: 2.0 Consensus size: 51
87559676 TGGATGTGAG
* *
87559686 CATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGACGTGATACATGTAA
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGACGTGATACATGTAA
* * * *
87559737 CATCCGAGCTCATTGTGAGGTCCGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGACGTGATACATGT
87559786 TATAAGGTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (51 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGACGTGATACATGTAA
Found at i:87569259 original size:31 final size:31
Alignment explanation
Indices: 87569221--87569352 Score: 194
Period size: 31 Copynumber: 4.3 Consensus size: 31
87569211 GAAGTGCGGT
* *
87569221 AGTGATATGATTTATGAAAATGCTTTAGCCC
1 AGTGATATGATTTATGAAAAGGCTTCAGCCC
87569252 AGTGATATGATTTATGAAAAGGCTTCAGCCC
1 AGTGATATGATTTATGAAAAGGCTTCAGCCC
* *
87569283 AGTGATATGATTTATGAAAAGGCTTCGGCCT
1 AGTGATATGATTTATGAAAAGGCTTCAGCCC
* * *
87569314 AGTGATATGGTTTATGGAAAGGCTTCGGCCC
1 AGTGATATGATTTATGAAAAGGCTTCAGCCC
87569345 AGT-ATATG
1 AGTGATATG
87569353 TCAAGACTAA
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.05
31 89 0.95
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (31 bp):
AGTGATATGATTTATGAAAAGGCTTCAGCCC
Found at i:87577766 original size:40 final size:40
Alignment explanation
Indices: 87577554--87577759 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
87577544 AACCCAAGTA
* * * *
87577554 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
87577593 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
87577633 CCTTCGGGACTTAGACCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
87577673 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
87577713 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
87577753 CCTTCGG
1 CCTTCGG
87577760 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 13 0.08
40 145 0.92
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:87579156 original size:13 final size:13
Alignment explanation
Indices: 87579138--87579163 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87579128 ATTTTTATTT
87579138 TTAACATAAAATA
1 TTAACATAAAATA
87579151 TTAACATAAAATA
1 TTAACATAAAATA
87579164 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:87581101 original size:40 final size:40
Alignment explanation
Indices: 87580909--87581094 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
87580899 TCGAATGATG
* * *
87580909 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
87580949 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
87580989 CCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87581029 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87581070 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87581095 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 116 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87586070 original size:24 final size:24
Alignment explanation
Indices: 87586042--87586089 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
87586032 AATGGCTAAT
87586042 CATTACCAAGCATTTCCATACTAC
1 CATTACCAAGCATTTCCATACTAC
*
87586066 CATTATCAAGCATTTCCATACTAC
1 CATTACCAAGCATTTCCATACTAC
87586090 TCAATAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.31
Consensus pattern (24 bp):
CATTACCAAGCATTTCCATACTAC
Found at i:87590753 original size:29 final size:29
Alignment explanation
Indices: 87590711--87590767 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
87590701 AATTCCCGAT
87590711 GTAGATACTACATGTCCTAAAGAACTAAA
1 GTAGATACTACATGTCCTAAAGAACTAAA
*
87590740 GTAGATACTACATGTCCTAAAGAGCTAA
1 GTAGATACTACATGTCCTAAAGAACTAA
87590768 CTTCTCTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.25
Consensus pattern (29 bp):
GTAGATACTACATGTCCTAAAGAACTAAA
Found at i:87592969 original size:40 final size:40
Alignment explanation
Indices: 87592924--87593053 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
87592914 CGGAATACAA
87592924 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
87592964 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
87593004 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
87593044 CCGGATATAA
1 CCGGATATAA
87593054 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:87593068 original size:40 final size:40
Alignment explanation
Indices: 87592924--87593087 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
87592914 CGGAATACAA
* **
87592924 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
87592964 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
87593004 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
87593044 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
87593084 CCGG
1 CCGG
87593088 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:87599100 original size:40 final size:40
Alignment explanation
Indices: 87599036--87599219 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
87599026 GCTACTCGTT
*
87599036 CAAATGCCTTCAGGA-TATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACT-TAGCCCGGATT-TAGTAACTCGCA
* *
87599076 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
87599116 C-CATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
87599154 CAAATACCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
87599195 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87599220 CATCATTCGA
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
38 24 0.20
39 18 0.15
40 64 0.53
41 14 0.12
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.