Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 28 of 438
Found at i:7021016 original size:2 final size:2
Alignment explanation
Indices: 7021009--7021040 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7020999 CCGTAATACT
7021009 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7021041 ACTAAAAGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7021304 original size:20 final size:20
Alignment explanation
Indices: 7021279--7021319 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7021269 TTTAATGAAA
7021279 ATACTATAAAAAAAATTAAC
1 ATACTATAAAAAAAATTAAC
7021299 ATACTATAAAAAAAATTAAC
1 ATACTATAAAAAAAATTAAC
7021319 A
1 A
7021320 CGAATGATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (20 bp):
ATACTATAAAAAAAATTAAC
Found at i:7022093 original size:18 final size:17
Alignment explanation
Indices: 7022057--7022096 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
7022047 AATAAAAAAT
7022057 ATAATTTTATCATTTTA
1 ATAATTTTATCATTTTA
7022074 ATAA-TTTAT-ATCTTT-
1 ATAATTTTATCAT-TTTA
7022089 ATAATTTT
1 ATAATTTT
7022097 TAAAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 6 0.29
16 11 0.52
17 4 0.19
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (17 bp):
ATAATTTTATCATTTTA
Found at i:7022176 original size:16 final size:16
Alignment explanation
Indices: 7022152--7022201 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
7022142 AATTTTATTA
*
7022152 TTATTAATTTAAAATT
1 TTATAAATTTAAAATT
*
7022168 TTATAAATTATAAAATA
1 TTATAAATT-TAAAATT
*
7022185 CT-TAAA-TTAAAATT
1 TTATAAATTTAAAATT
7022199 TTA
1 TTA
7022202 CTACTTTAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
14 7 0.26
15 1 0.04
16 12 0.44
17 7 0.26
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TTATAAATTTAAAATT
Found at i:7027135 original size:18 final size:18
Alignment explanation
Indices: 7027114--7027153 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7027104 TTTTGAACAA
* *
7027114 TTTAATTTTTTTTTTCTT
1 TTTAACTTTCTTTTTCTT
7027132 TTTAACTTTCTTTTTCTT
1 TTTAACTTTCTTTTTCTT
7027150 TTTA
1 TTTA
7027154 TTCTTCATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTAACTTTCTTTTTCTT
Found at i:7028578 original size:34 final size:34
Alignment explanation
Indices: 7028518--7028588 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
7028508 ATCAAATTAA
* *
7028518 TTAATTAGGTTGGATTACTTTTTATTTGAATAAT
1 TTAATTAGGTTGGAATACTTTTTATTTAAATAAT
* * *
7028552 TTAATTGGGTTGGAAT-GTTTTATATTTAAATATT
1 TTAATTAGGTTGGAATACTTTT-TATTTAAATAAT
7028586 TTA
1 TTA
7028589 TTTTTTGAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 4 0.13
34 27 0.87
ACGTcount: A:0.30, C:0.01, G:0.15, T:0.54
Consensus pattern (34 bp):
TTAATTAGGTTGGAATACTTTTTATTTAAATAAT
Found at i:7029857 original size:14 final size:14
Alignment explanation
Indices: 7029838--7029865 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7029828 AAGATTGTTA
7029838 CCCGTTGTTCGGTG
1 CCCGTTGTTCGGTG
7029852 CCCGTTGTTCGGTG
1 CCCGTTGTTCGGTG
7029866 TCGACATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.29, G:0.36, T:0.36
Consensus pattern (14 bp):
CCCGTTGTTCGGTG
Found at i:7030955 original size:25 final size:27
Alignment explanation
Indices: 7030904--7030971 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 27
7030894 TTTATTATTA
7030904 TTATATAATCATTATTTTGAAGCTTTT
1 TTATATAATCATTATTTTGAAGCTTTT
* *
7030931 TTATATTAT-ATTATTTT-AA-C-ATT
1 TTATATAATCATTATTTTGAAGCTTTT
*
7030954 TTATATAATACCTTATTT
1 TTATATAAT-CATTATTT
7030972 AAATATTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 10 0.29
24 1 0.03
25 8 0.23
26 8 0.23
27 8 0.23
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.57
Consensus pattern (27 bp):
TTATATAATCATTATTTTGAAGCTTTT
Found at i:7030979 original size:25 final size:23
Alignment explanation
Indices: 7030929--7030980 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 23
7030919 TTTGAAGCTT
* *
7030929 TTTTATATTATATTATTTTAACA
1 TTTTATATAATATTATTTAAACA
*
7030952 TTTTATATAATACCTTATTTAAATA
1 TTTTATATAATA--TTATTTAAACA
7030977 TTTT
1 TTTT
7030981 TAATATATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.46
25 13 0.54
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTATATAATATTATTTAAACA
Found at i:7031459 original size:26 final size:26
Alignment explanation
Indices: 7031377--7031461 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
7031367 GTTTTGTGTA
*
7031377 TTATTTATCTT-AATTTATTTA-ACAT
1 TTATTTATCTTAAATTGATTTATAC-T
* * **
7031402 ATTATTTATCTGAAACTTGCTTTATAAA
1 -TTATTTATCTTAAA-TTGATTTATACT
*
7031430 TTATTTATTTTAAATTGATTTATACT
1 TTATTTATCTTAAATTGATTTATACT
7031456 TTATTT
1 TTATTT
7031462 TTGAAATGTA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
26 25 0.54
27 14 0.30
28 6 0.13
29 1 0.02
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.58
Consensus pattern (26 bp):
TTATTTATCTTAAATTGATTTATACT
Found at i:7032270 original size:2 final size:2
Alignment explanation
Indices: 7032263--7032298 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7032253 ATCAATCACT
7032263 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7032299 CTACATATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7033019 original size:12 final size:12
Alignment explanation
Indices: 7032959--7033021 Score: 60
Period size: 12 Copynumber: 5.2 Consensus size: 12
7032949 AATTACGCAC
7032959 ACATAGTGCCAT
1 ACATAGTGCCAT
* *
7032971 ACATA-TACGCAC
1 ACATAGTGC-CAT
7032983 ACATAGTGCCAT
1 ACATAGTGCCAT
7032995 ACAAATA-TG-CAT
1 AC--ATAGTGCCAT
7033007 ACATAGTGCCAT
1 ACATAGTGCCAT
7033019 ACA
1 ACA
7033022 AATACGCACA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 3 0.07
11 4 0.10
12 27 0.66
13 4 0.10
14 3 0.07
ACGTcount: A:0.40, C:0.25, G:0.13, T:0.22
Consensus pattern (12 bp):
ACATAGTGCCAT
Found at i:7033072 original size:24 final size:24
Alignment explanation
Indices: 7032930--7033065 Score: 209
Period size: 24 Copynumber: 5.7 Consensus size: 24
7032920 GATTCAACTC
* * *
7032930 CGCACACATAGTGCCAAATAATTA
1 CGCACACATAGTGCCATACAAATA
*
7032954 CGCACACATAGTGCCATACATATA
1 CGCACACATAGTGCCATACAAATA
7032978 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
* *
7033002 TGCATACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
*
7033026 CGCACACATAGTGCCATTCAAATA
1 CGCACACATAGTGCCATACAAATA
7033050 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
7033066 CTCAAATCCG
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 102 1.00
ACGTcount: A:0.39, C:0.28, G:0.13, T:0.20
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATA
Found at i:7033079 original size:72 final size:71
Alignment explanation
Indices: 7032923--7033079 Score: 215
Period size: 72 Copynumber: 2.2 Consensus size: 71
7032913 AATCTACGAT
* * * * *
7032923 TCAACTCCGCACACATAGTGCCAAATAATTACGCACACATAGTGCCATACATATACGCACACATA
1 TCAAATCCGCATACATAGTGCCAAACAAATACGCACACATAGTGCCATACAAATACGCACACATA
7032988 GTGCCA
66 GTGCCA
** * *
7032994 TACAAATATGCATACATAGTGCCATACAAATACGCACACATAGTGCCATTCAAATACGCACACAT
1 T-CAAATCCGCATACATAGTGCCAAACAAATACGCACACATAGTGCCATACAAATACGCACACAT
7033059 AGTGCCA
65 AGTGCCA
7033066 CTCAAATCCGCATA
1 -TCAAATCCGCATA
7033080 TCTAGTAACC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
71 1 0.01
72 71 0.97
73 1 0.01
ACGTcount: A:0.38, C:0.29, G:0.12, T:0.20
Consensus pattern (71 bp):
TCAAATCCGCATACATAGTGCCAAACAAATACGCACACATAGTGCCATACAAATACGCACACATA
GTGCCA
Found at i:7040626 original size:12 final size:12
Alignment explanation
Indices: 7040611--7040702 Score: 55
Period size: 12 Copynumber: 7.7 Consensus size: 12
7040601 CACATAGTGC
7040611 CATACATATACG
1 CATACATATACG
*
7040623 CATACATAGTGC-
1 CATACATA-TACG
* *
7040635 CATACAAATATG
1 CATACATATACG
*
7040647 CATACATAGTGC-
1 CATACATA-TACG
*
7040659 CATACAAATACG
1 CATACATATACG
* *
7040671 CACACATAGTGC-
1 CATACATA-TACG
*
7040683 CATACAAATACG
1 CATACATATACG
*
7040695 CACACATA
1 CATACATA
7040703 GTGCCACTCA
Statistics
Matches: 57, Mismatches: 17, Indels: 12
0.66 0.20 0.14
Matches are distributed among these distances:
11 5 0.09
12 47 0.82
13 5 0.09
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (12 bp):
CATACATATACG
Found at i:7040720 original size:24 final size:24
Alignment explanation
Indices: 7040573--7040708 Score: 200
Period size: 24 Copynumber: 5.7 Consensus size: 24
7040563 GAGTCAACTC
* * *
7040573 CGCACACATAGTGCCAAATAATTA
1 CGCACACATAGTGCCATACAAATA
* *
7040597 CACACACATAGTGCCATACATATA
1 CGCACACATAGTGCCATACAAATA
*
7040621 CGCATACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
* *
7040645 TGCATACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
7040669 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
7040693 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
7040709 CTCAAATCCG
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 101 1.00
ACGTcount: A:0.40, C:0.27, G:0.12, T:0.20
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATA
Found at i:7040722 original size:72 final size:71
Alignment explanation
Indices: 7040566--7040722 Score: 206
Period size: 72 Copynumber: 2.2 Consensus size: 71
7040556 AATCTACGAG
* * * * * *
7040566 TCAACTCCGCACACATAGTGCCAAATAATTACACACACATAGTGCCATACATATACGCATACATA
1 TCAAATCCGCATACATAGTGCCAAACAAATACACACACATAGTGCCATACAAATACGCACACATA
7040631 GTGCCA
66 GTGCCA
** * *
7040637 TACAAATATGCATACATAGTGCCATACAAATACGCACACATAGTGCCATACAAATACGCACACAT
1 T-CAAATCCGCATACATAGTGCCAAACAAATACACACACATAGTGCCATACAAATACGCACACAT
7040702 AGTGCCA
65 AGTGCCA
7040709 CTCAAATCCGCATA
1 -TCAAATCCGCATA
7040723 TCTAGTAACC
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
71 1 0.01
72 70 0.97
73 1 0.01
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.20
Consensus pattern (71 bp):
TCAAATCCGCATACATAGTGCCAAACAAATACACACACATAGTGCCATACAAATACGCACACATA
GTGCCA
Found at i:7043566 original size:73 final size:73
Alignment explanation
Indices: 7043415--7043800 Score: 379
Period size: 73 Copynumber: 5.3 Consensus size: 73
7043405 ATGCCGACCT
* * * * * *
7043415 TTAAAAAGGGTTGGGATAGACC-TAGT-TAAGACCAACCTTTGAAAAAGGTTGTGATAAACCTGT
1 TTAAAAA-GGTTGAGATAGACCAT-GTCTAAG-GCAACTTTTAAAAAAGGTTGGGATAGACCTGT
*
7043478 CTAAGACAACC
63 CTAAGGCAACC
* * ** * * *
7043489 TTAAAAAGGTCGATATAGTTCTTGTTTAAGGCAACTTTTAAAAACGGTTGGGATAGAGCC-GTCT
1 TTAAAAAGGTTGAGATAGACCATGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGA-CCTGTCT
* *
7043553 AATGCAACT
65 AAGGCAACC
* * ** * *
7043562 TTAAAAAGGTTGGGATCGA-CATTGTCTAAAACAACCTATAAAAAAAGGTTGGGATAGACCTGTC
1 TTAAAAAGGTTGAGATAGACCA-TGTCTAAGGCAA-CTTTTAAAAAAGGTTGGGATAGACCTGTC
7043626 TAAGGCAACC
64 TAAGGCAACC
* * * * *
7043636 TTAAACAGGTT-AGGATAGACCATATCTAAGGCAACCTTTAAAAAAGGTCGGAATAGA-CTCGTC
1 TTAAAAAGGTTGA-GATAGACCATGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACCT-GTC
7043699 TAAGGCAACC
64 TAAGGCAACC
* *
7043709 TTAAAAAGGTTGAGATAGACCATGTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGACCTGTTTA
1 TTAAAAAGGTTGAGATAGACCATGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACCTGTCTA
*
7043774 AAGCAACC
66 AGGCAACC
*
7043782 TTAAAAAGGTTGGGATAGA
1 TTAAAAAGGTTGAGATAGA
7043801 TATTATTTAA
Statistics
Matches: 253, Mismatches: 48, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
72 3 0.01
73 176 0.70
74 72 0.28
75 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (73 bp):
TTAAAAAGGTTGAGATAGACCATGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACCTGTCTA
AGGCAACC
Found at i:7043692 original size:147 final size:146
Alignment explanation
Indices: 7043413--7043800 Score: 415
Period size: 147 Copynumber: 2.6 Consensus size: 146
7043403 CAATGCCGAC
* * * * * *
7043413 CTTTAAAAAGGGTTGGGATAGACCTAGT-TAAGACCAACCTTTGAAAAAGGTTGTGATAAACCTG
1 CTTTAAAAA-GGTTGGGATAGACATTGTCTAA-AACAACCTTTAAAAAAGGTTGGGATAGACCTG
* * * ** * * * * * * *
7043477 TCTAAGACAACCTTAAAAAGG-TCGATATAGTTCTTGTTTAAGGCAACTTTTAAAAACGGTTGGG
64 TCTAAGGCAACCTTAAAAAGGTTAG-GATAGACCATATCTAAGGCAACCTTTAAAAAAGGTCGGA
*
7043541 ATAGAGC-CGTCTAATGCAA
128 ATAGA-CTCGTCTAAGGCAA
* *
7043560 CTTTAAAAAGGTTGGGATCGACATTGTCTAAAACAACCTATAAAAAAAGGTTGGGATAGACCTGT
1 CTTTAAAAAGGTTGGGATAGACATTGTCTAAAACAACCT-TTAAAAAAGGTTGGGATAGACCTGT
*
7043625 CTAAGGCAACCTTAAACAGGTTAGGATAGACCATATCTAAGGCAACCTTTAAAAAAGGTCGGAAT
65 CTAAGGCAACCTTAAAAAGGTTAGGATAGACCATATCTAAGGCAACCTTTAAAAAAGGTCGGAAT
7043690 AGACTCGTCTAAGGCAA
130 AGACTCGTCTAAGGCAA
* * *** *
7043707 CCTTAAAAAGGTTGAGATAGACCA-TGTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGACCTGT
1 CTTTAAAAAGGTTGGGATAGA-CATTGTCTAAAACAACCTTTAAAAAAGGTTGGGATAGACCTGT
* * *
7043771 TTAAAGCAACCTTAAAAAGGTTGGGATAGA
65 CTAAGGCAACCTTAAAAAGGTTAGGATAGA
7043801 TATTATTTAA
Statistics
Matches: 202, Mismatches: 34, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
146 73 0.36
147 125 0.62
148 4 0.02
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (146 bp):
CTTTAAAAAGGTTGGGATAGACATTGTCTAAAACAACCTTTAAAAAAGGTTGGGATAGACCTGTC
TAAGGCAACCTTAAAAAGGTTAGGATAGACCATATCTAAGGCAACCTTTAAAAAAGGTCGGAATA
GACTCGTCTAAGGCAA
Found at i:7043982 original size:11 final size:11
Alignment explanation
Indices: 7043951--7043990 Score: 53
Period size: 11 Copynumber: 3.4 Consensus size: 11
7043941 CTAAAAAATT
7043951 TAAAATTTAAAA
1 TAAAA-TTAAAA
7043963 TACAAAATTAAAA
1 T--AAAATTAAAA
7043976 TAAAATTAAAA
1 TAAAATTAAAA
7043987 TAAA
1 TAAA
7043991 TATTGAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 14 0.54
12 1 0.04
13 7 0.27
14 4 0.15
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAAATTAAAA
Found at i:7046723 original size:47 final size:47
Alignment explanation
Indices: 7046649--7046774 Score: 234
Period size: 47 Copynumber: 2.7 Consensus size: 47
7046639 ATCAAATAAA
* *
7046649 TAATGCATACTTTACCCGGGTAAAGTATGCATTATTAGTGAATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
7046696 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
7046743 TAATACATACTTTATCCGGGTAAAGTATGCAT
1 TAATACATACTTTATCCGGGTAAAGTATGCAT
7046775 ACATTCTTAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (47 bp):
TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
Found at i:7047481 original size:37 final size:37
Alignment explanation
Indices: 7047404--7047481 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
7047394 TATAATCACA
* ** *
7047404 AAACCCCAAATCCATAATCATTAAACCCTAAAATCAT
1 AAACCCCAAATCCATAAACACAAAACCCTAAAACCAT
*
7047441 AAACCCCAAA-CCTATAAACACAAAACCCTAAAACCTT
1 AAACCCCAAATCC-ATAAACACAAAACCCTAAAACCAT
7047478 AAAC
1 AAAC
7047482 TATATAAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 2 0.06
37 33 0.94
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.17
Consensus pattern (37 bp):
AAACCCCAAATCCATAAACACAAAACCCTAAAACCAT
Found at i:7048013 original size:132 final size:132
Alignment explanation
Indices: 7047776--7048276 Score: 815
Period size: 132 Copynumber: 3.8 Consensus size: 132
7047766 CTGACAAGTG
* * *
7047776 TATCCCAACACTTAGGAAAGTGTCGCCCCAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
* * *
7047841 TTATTCAAGCATTGTCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
7047906 TC
131 TC
* * *
7047908 TATCCCAACACTTAGAAAAGTGTCGCCACAAAAATGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
7047973 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
7048038 TC
131 TC
* * * * *
7048040 TATCCCAACACTTAGGGAAGTGTCACCACAAAAGTGTCTTCTTAGGAATACACAGAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
*
7048105 TTATTCAAGCGTTGCCTTAGGCATACATATCCTAACCCTTATACAAAGAGTTGGCCAAAGCATAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
7048170 TC
131 TC
* *
7048172 TATCCCAACACTTAGGAAA-TGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
* * *
7048236 TTATTCAAGCTTTGCTTTAGGCATACATATACCAACCCTTA
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
7048277 GGAAAATGTC
Statistics
Matches: 343, Mismatches: 26, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
131 76 0.22
132 267 0.78
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (132 bp):
TATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
TC
Found at i:7048346 original size:91 final size:91
Alignment explanation
Indices: 7048176--7048346 Score: 263
Period size: 91 Copynumber: 1.9 Consensus size: 91
7048166 ATAGTCTATC
*
7048176 CCAACACTTAGGAAATGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
1 CCAACACTTAGGAAATGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
*
7048241 CAAGCTTTGCTTTAGGCATACATATA
66 CAAGCGTTGCTTTAGGCATACATATA
* * **
7048267 CCAACCCTTAGGAAAATGTCGCCGCAAAAGTGTCGTCTTAGGACTACAC-AAAGGCAACTCTTAT
1 CCAACACTTAGG-AAATGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTAT
*
7048331 TTAAGCGTTGCTTTAG
65 TCAAGCGTTGCTTTAG
7048347 ACATGCATCT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
91 38 0.53
92 34 0.47
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (91 bp):
CCAACACTTAGGAAATGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
CAAGCGTTGCTTTAGGCATACATATA
Found at i:7048363 original size:91 final size:91
Alignment explanation
Indices: 7048176--7048367 Score: 262
Period size: 91 Copynumber: 2.1 Consensus size: 91
7048166 ATAGTCTATC
* *
7048176 CCAACACTTAGGAAATGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
1 CCAACCCTTAGGAAATGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
* *
7048241 CAAGCTTTGCTTTAGGCATACATATA
66 CAAGCGTTGCTTTAGACATACATATA
* **
7048267 CCAACCCTTAGGAAAATGTCGCCGCAAAAGTGTCGTCTTAGGACTACAC-AAAGGCAACTCTTAT
1 CCAACCCTTAGG-AAATGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTAT
* * *
7048331 TTAAGCGTTGCTTTAGACATGCATCT-
65 TCAAGCGTTGCTTTAGACATACATATA
7048357 CTCAACCCTTA
1 C-CAACCCTTA
7048368 TACAAAGAGT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
90 1 0.01
91 54 0.61
92 34 0.38
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (91 bp):
CCAACCCTTAGGAAATGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
CAAGCGTTGCTTTAGACATACATATA
Found at i:7055025 original size:39 final size:39
Alignment explanation
Indices: 7054982--7055061 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
7054972 ATCCGAGGAA
7054982 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
1 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
7055021 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
1 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
7055060 GA
1 GA
7055062 AACTATCGGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (39 bp):
GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
Found at i:7059868 original size:17 final size:17
Alignment explanation
Indices: 7059846--7059878 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7059836 ACTAAAATAC
7059846 ATACATAATATATATAT
1 ATACATAATATATATAT
7059863 ATACATAATATATATA
1 ATACATAATATATATA
7059879 AAATGAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
ATACATAATATATATAT
Found at i:7059971 original size:23 final size:23
Alignment explanation
Indices: 7059907--7060046 Score: 87
Period size: 23 Copynumber: 6.0 Consensus size: 23
7059897 TATATTATAA
*
7059907 ATAC-TAATAACA-TAAAAATAT
1 ATACATAATAATATTAAAAATAT
*
7059928 AT---TAATAATACTACATAAATAT
1 ATACATAATAATATTA-A-AAATAT
* *
7059950 GTACAT-ATATATATTAAAAATAA
1 ATACATAATA-ATATTAAAAATAT
* *
7059973 ATACGTAATAATATTAAAAGTAT
1 ATACATAATAATATTAAAAATAT
* *
7059996 GTACATAAT-ATAATGAAAATATAT
1 ATACATAATAAT-ATTAAAA-ATAT
7060020 ATACATAATATAATATGTAAAAATAT
1 ATACAT-A-ATAATAT-TAAAAATAT
7060046 A
1 A
7060047 ATATAGTATT
Statistics
Matches: 91, Mismatches: 14, Indels: 23
0.71 0.11 0.18
Matches are distributed among these distances:
19 7 0.08
20 2 0.02
21 3 0.03
22 9 0.10
23 33 0.36
24 15 0.16
25 7 0.08
26 9 0.10
27 6 0.07
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.34
Consensus pattern (23 bp):
ATACATAATAATATTAAAAATAT
Found at i:7060248 original size:21 final size:20
Alignment explanation
Indices: 7060222--7060262 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
7060212 ATATACCTAT
* *
7060222 ATATATATTAAAGATATATAC
1 ATATATAATAAA-ACATATAC
7060243 ATATATAATAAAACATATAC
1 ATATATAATAAAACATATAC
7060263 TAAAATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATATAATAAAACATATAC
Found at i:7060516 original size:3 final size:3
Alignment explanation
Indices: 7060490--7060589 Score: 116
Period size: 3 Copynumber: 33.7 Consensus size: 3
7060480 ATACTAGTAC
* * * **
7060490 TAA TAA TAT TAT TAA TAA -ATA TAA TAA TAA TAG T-A TGT TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
7060534 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
7060582 TAA TAA TA
1 TAA TAA TA
7060590 TATGTATGCA
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
2 4 0.05
3 78 0.92
4 3 0.04
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:7062933 original size:73 final size:73
Alignment explanation
Indices: 7062822--7062962 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 73
7062812 TAAAAAACAA
* *
7062822 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTT
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATG-GTCGATTTTTT
7062886 GAAAAATAG
65 GAAAAATAG
** *
7062895 AAATTAAAAATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGGTTGATTTTTTG
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGGTCGATTTTTTG
7062960 AAA
66 AAA
7062963 CATAAATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 4 0.06
73 58 0.94
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (73 bp):
AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGGTCGATTTTTTG
AAAAATAG
Found at i:7063020 original size:161 final size:159
Alignment explanation
Indices: 7062746--7063130 Score: 668
Period size: 161 Copynumber: 2.4 Consensus size: 159
7062736 ATAAATTGAG
** *
7062746 AATACCTCAATGTGACTTGATGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAACATA
1 AATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACATA
7062809 AATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
66 AATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
7062874 GAGTCGATTTTTGAAAAATAGAAATTAAA
131 GAGTCGATTTTTGAAAAATAGAAATTAAA
7062903 AATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATG-GTTGATTTTTTGAAACATA
1 AATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACATA
*
7062967 AATAAATAAAAAACAAAAATTGAACATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
66 AAT---TAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
*
7063032 TATGAGTCGATTTTTGAAAAATAGAAATTGAA
128 TATGAGTCGATTTTTGAAAAATAGAAATTAAA
*
7063064 AATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA
1 AATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACATA
7063129 AA
66 AA
7063131 AATATCAGAA
Statistics
Matches: 216, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
156 5 0.02
157 42 0.19
158 15 0.07
161 134 0.62
162 20 0.09
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (159 bp):
AATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACATA
AATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTGAAAAATAGAAATTAAA
Found at i:7063094 original size:73 final size:74
Alignment explanation
Indices: 7062975--7063133 Score: 248
Period size: 73 Copynumber: 2.2 Consensus size: 74
7062965 TAAATAAATA
* * *
7062975 AAAAACAAAAATTGAACATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTC
1 AAAAATAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTC
7063040 GA-TTTTTG
66 GATTTTTTG
* ** *
7063048 AAAAATAGAAATTGAAAATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAATAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTC
7063113 GATTTTTTG
66 GATTTTTTG
7063122 AAAAATAAAAAT
1 AAAAATAAAAAT
7063134 ATCAGAATAC
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 60 0.78
74 17 0.22
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (74 bp):
AAAAATAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTTTG
Found at i:7075320 original size:46 final size:44
Alignment explanation
Indices: 7075268--7075353 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
7075258 AGAACAGAAA
*
7075268 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAAGAT
*
7075314 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
7075354 GGAATAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 17 0.45
46 21 0.55
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAAGAT
Found at i:7075367 original size:44 final size:45
Alignment explanation
Indices: 7075270--7075394 Score: 126
Period size: 44 Copynumber: 2.8 Consensus size: 45
7075260 AACAGAAATG
* * *
7075270 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATA
* *
7075316 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
** * * * *
7075360 ATTCATGTAAGTTCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7075395 CAGGATATTG
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
44 34 0.52
45 1 0.02
46 30 0.46
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
Found at i:7077834 original size:2 final size:2
Alignment explanation
Indices: 7077827--7077865 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7077817 CTAATAGTCC
7077827 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7077866 TAAAGTATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7077941 original size:15 final size:15
Alignment explanation
Indices: 7077921--7077951 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7077911 ACTAAAATAC
7077921 ATACATAATATATAT
1 ATACATAATATATAT
7077936 ATACATAATATATAT
1 ATACATAATATATAT
7077951 A
1 A
7077952 AAATGAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
ATACATAATATATAT
Found at i:7077952 original size:24 final size:24
Alignment explanation
Indices: 7077925--7078038 Score: 58
Period size: 26 Copynumber: 4.5 Consensus size: 24
7077915 AAATACATAC
7077925 ATAATATATATATACATAATATAT
1 ATAATATATATATACATAATATAT
* *
7077949 ATAAAATGAACATATACCAT-ATATATT
1 ATAATAT--ATATATA-CATAATATA-T
*
7077976 ATAA-ATACTA-ATAACATAAAAATAT
1 ATAATATA-TATAT-ACAT-AATATAT
*
7078001 ATATTA-ATAATACTACATAA-ATAT
1 ATAATATAT-ATA-TACATAATATAT
*
7078025 GTACATATATATAT
1 ATA-ATATATATAT
7078039 TAAAAATAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 28
0.66 0.07 0.27
Matches are distributed among these distances:
24 20 0.29
25 15 0.22
26 25 0.36
27 9 0.13
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATATATATATACATAATATAT
Found at i:7078079 original size:23 final size:23
Alignment explanation
Indices: 7077980--7078120 Score: 103
Period size: 23 Copynumber: 6.0 Consensus size: 23
7077970 TATATTATAA
*
7077980 ATAC-TAATAACA-TAAAAATAT
1 ATACATAATAATATTAAAAATAT
* *
7078001 ATA-TTAATAATACTACATAAATAT
1 ATACATAATAATATTA-A-AAATAT
* *
7078025 GTACAT-ATATATATTAAAAATAA
1 ATACATAATA-ATATTAAAAATAT
* *
7078048 ATACGTAATAATATTAAAAGTAT
1 ATACATAATAATATTAAAAATAT
* *
7078071 GTACATAAT-ATAATGAAAAATAT
1 ATACATAATAAT-ATTAAAAATAT
7078094 ATACATAATATAATATGTAAAAATAT
1 ATACAT-A-ATAATAT-TAAAAATAT
7078120 A
1 A
7078121 ATATAGTATT
Statistics
Matches: 93, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
21 10 0.11
22 4 0.04
23 42 0.45
24 16 0.17
25 10 0.11
26 11 0.12
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (23 bp):
ATACATAATAATATTAAAAATAT
Found at i:7078083 original size:25 final size:23
Alignment explanation
Indices: 7078019--7078150 Score: 82
Period size: 23 Copynumber: 5.7 Consensus size: 23
7078009 AATACTACAT
*
7078019 AAATATGTACATATAT-ATATTAA
1 AAATATATACATATATAATATT-A
* *
7078042 AAATAAATACGTA-ATAATATTA
1 AAATATATACATATATAATATTA
*
7078064 AAAGTATGTACATAATATAATGA--A
1 AAA-TATATACAT-ATATAAT-ATTA
7078088 AAATATATACATAATATAATATGTA
1 AAATATATACAT-ATATAATAT-TA
**
7078113 AAA-ATATA-ATATAGT-AT-TCG
1 AAATATATACATATA-TAATATTA
7078133 AAATATATACATGATATA
1 AAATATATACAT-ATATA
7078151 TAAAAATACA
Statistics
Matches: 87, Mismatches: 9, Indels: 26
0.71 0.07 0.21
Matches are distributed among these distances:
20 3 0.03
21 6 0.07
22 15 0.17
23 43 0.49
24 10 0.11
25 9 0.10
26 1 0.01
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (23 bp):
AAATATATACATATATAATATTA
Found at i:7078408 original size:22 final size:23
Alignment explanation
Indices: 7078360--7078418 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 23
7078350 AATAATAAGG
7078360 ATAATATAAAAATATATACATGAA
1 ATAATATAAAAATATATACAT-AA
*
7078384 ATAGTATAAAAATATATA-ACT-A
1 ATAATATAAAAATATATACA-TAA
7078406 ATAATATTAAAAA
1 ATAATA-TAAAAA
7078419 AAATAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 6 0.19
23 7 0.23
24 18 0.58
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (23 bp):
ATAATATAAAAATATATACATAA
Found at i:7078416 original size:23 final size:23
Alignment explanation
Indices: 7078268--7078418 Score: 63
Period size: 20 Copynumber: 6.7 Consensus size: 23
7078258 AAAAACCTAT
*
7078268 TAATAATATTACATAAATATATACC
1 TAATAATATTA-A-AAATATATAAC
*
7078293 TATATATATATTAAAGATATAT-AC
1 TA-ATA-ATATTAAAAATATATAAC
* *
7078317 --AT-ATATAATAAAACATA-AAC
1 TAATAATATTA-AAAATATATAAC
* *
7078337 TAA-AATTAATAATAATA-ATAA-
1 TAATAA-TATTAAAAATATATAAC
**
7078358 GGATAATA-TAAAAATATAT-AC
1 TAATAATATTAAAAATATATAAC
*
7078379 ATGA-AATAGTATAAAAATATATAAC
1 -TAATAATA-T-TAAAAATATATAAC
7078404 TAATAATATTAAAAA
1 TAATAATATTAAAAA
7078419 AAATAAAGAA
Statistics
Matches: 94, Mismatches: 14, Indels: 38
0.64 0.10 0.26
Matches are distributed among these distances:
19 5 0.05
20 16 0.17
21 12 0.13
22 12 0.13
23 9 0.10
24 15 0.16
25 15 0.16
26 4 0.04
27 6 0.06
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (23 bp):
TAATAATATTAAAAATATATAAC
Found at i:7078483 original size:2 final size:2
Alignment explanation
Indices: 7078437--7078464 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7078427 AATATACATG
7078437 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7078465 TAGAAATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7078577 original size:12 final size:13
Alignment explanation
Indices: 7078562--7078655 Score: 57
Period size: 14 Copynumber: 6.8 Consensus size: 13
7078552 ATACTAGTAC
*
7078562 TAATAATAT-TAT
1 TAATAATATATAA
7078574 TAATAAATATAATAA
1 TAAT-AATAT-ATAA
**
7078589 TAATAATAGTATGT
1 TAATAATA-TATAA
* *
7078603 TAATAACAGCAATAA
1 TAATAATA--TATAA
*
7078618 TATATAAAATAATAA
1 TA-ATAATAT-ATAA
7078633 TAATAATATA-AA
1 TAATAATATATAA
7078645 TAATAATATAT
1 TAATAATATAT
7078656 GTATGCAAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
12 16 0.25
13 6 0.10
14 19 0.30
15 17 0.27
16 5 0.08
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (13 bp):
TAATAATATATAA
Found at i:7078588 original size:3 final size:3
Alignment explanation
Indices: 7078562--7078652 Score: 55
Period size: 3 Copynumber: 30.7 Consensus size: 3
7078552 ATACTAGTAC
* * * **
7078562 TAA TAA TAT TAT TAA TAA -ATA TAA TAA TAA TAA TAG T-A TGT TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* * *
7078606 TAA CAG CAA TAA TATA TAA -AA TAA TAA TAA TAA T-A TAAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
7078651 TA
1 TA
7078653 TATGTATGCA
Statistics
Matches: 70, Mismatches: 11, Indels: 14
0.74 0.12 0.15
Matches are distributed among these distances:
2 6 0.09
3 58 0.83
4 6 0.09
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7081756 original size:13 final size:13
Alignment explanation
Indices: 7081738--7081762 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7081728 TATTATAATT
7081738 TAAAATTTAATAA
1 TAAAATTTAATAA
7081751 TAAAATTTAATA
1 TAAAATTTAATA
7081763 GCATAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAAATTTAATAA
Found at i:7082499 original size:61 final size:60
Alignment explanation
Indices: 7082400--7082521 Score: 199
Period size: 61 Copynumber: 2.0 Consensus size: 60
7082390 TGACATTTGC
*
7082400 TTTGTCACAACAAGCAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCATTTT
1 TTTGTCACAACAAGCAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTC-TTTT
* * *
7082461 TTTGTCACAACAAGGAACTCTTCCCATTTCTCTGTATAATCCTTCAGCTTAGAGTCTTTT
1 TTTGTCACAACAAGCAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTTT
7082521 T
1 T
7082522 CAGGAGACCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
60 5 0.09
61 52 0.91
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (60 bp):
TTTGTCACAACAAGCAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTTT
Found at i:7082566 original size:92 final size:92
Alignment explanation
Indices: 7082461--7083245 Score: 1283
Period size: 92 Copynumber: 8.6 Consensus size: 92
7082451 GAGTCATTTT
* * *
7082461 TTTGTCACAACAAGGAACTCTTCCCATTTCTCTGTATAATCCTTCAGCTTAGAGTCTTTTTCAGG
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
*
7082526 AGACCATGGCCCTTTCTTCACATTTGT
66 AGACCATGGCCCTTTCTTCACATTTGC
*
7082553 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATGATCCTTCAGCTTAGAGTCTTCTTCAGG
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
**
7082618 AGACCATGGCCCTTTCTTGGCATTTGC
66 AGACCATGGCCCTTTCTTCACATTTGC
*
7082645 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATGATCCTTCAGCTT--AGTCTTCTTCAGG
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
**
7082708 AGACCATGGCCCTTTCTTGGCATTTGC
66 AGACCATGGCCCTTTCTTCACATTTGC
* *
7082735 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATGATCCTTCAGCTTAGAGTCTTCTTCAGG
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
7082800 AGACCATGGCCCTTTCTTCACATTTGC
66 AGACCATGGCCCTTTCTTCACATTTGC
* *
7082827 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCTTTCAGCTTAGAGTCTT-TT-AGG
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
*
7082890 AGACCATGGCCCTTTCTTCACATTTTC
66 AGACCATGGCCCTTTCTTCACATTTGC
* * * *
7082917 TTCGTCACAACAAGGAAATCTCCCCATTTCTCTCTATCATCCTTCAGCTTAGAGTCTTCTTC-GT
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAG-
7082981 GAGACCATGGCCCTTTCTTCACATTTGC
65 GAGACCATGGCCCTTTCTTCACATTTGC
* * *
7083009 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCTTTCAGCTTAGAGTCTTTTTCAGG
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
* * *
7083074 AGACCATCGCCCTCTCTTCACATTTTC
66 AGACCATGGCCCTTTCTTCACATTTGC
*
7083101 TTTGTCACAACAAGGAACTCTTCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
7083166 AGACCATGGCCCTTTCTTCACATTTGC
66 AGACCATGGCCCTTTCTTCACATTTGC
*
7083193 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGA
1 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGA
7083246 TTTACTCACT
Statistics
Matches: 648, Mismatches: 39, Indels: 12
0.93 0.06 0.02
Matches are distributed among these distances:
90 170 0.26
91 5 0.01
92 472 0.73
93 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.36
Consensus pattern (92 bp):
TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGG
AGACCATGGCCCTTTCTTCACATTTGC
Found at i:7082770 original size:182 final size:183
Alignment explanation
Indices: 7082461--7083243 Score: 1286
Period size: 182 Copynumber: 4.3 Consensus size: 183
7082451 GAGTCATTTT
* * *
7082461 TTTGTCACAACAAGGAACTCTTCCCATTTCTCTGTATAATCCTTCAGCTTAGAGTCTTTTTCAGG
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTA-AGTCTTTTTCAGG
*
7082526 AGACCATGGCCCTTTCTTCACATTTGTTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATG
65 AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATG
**
7082591 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTGGCATTTGC
130 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGC
* * *
7082645 TTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATGATCCTTCAGCTT-AGTCTTCTTCAGGA
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAAGTCTTTTTCAGGA
** *
7082709 GACCATGGCCCTTTCTTGGCATTTGCTTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATGA
66 GACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATGA
7082774 TCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGC
131 TCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGC
*
7082827 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCTTTCAGCTTAGAGTC-TTTT-AGG
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTA-AGTCTTTTTCAGG
* * * * *
7082890 AGACCATGGCCCTTTCTTCACATTTTCTTCGTCACAACAAGGAAATCTCCCCATTTCTCTCTATC
65 AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATG
7082955 ATCCTTCAGCTTAGAGTCTTCTTC-GTGAGACCATGGCCCTTTCTTCACATTTGC
130 ATCCTTCAGCTTAGAGTCTTCTTCAG-GAGACCATGGCCCTTTCTTCACATTTGC
*
7083009 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCTTTCAGCTTAGAGTCTTTTTCAGG
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTA-AGTCTTTTTCAGG
* * * * *
7083074 AGACCATCGCCCTCTCTTCACATTTTCTTTGTCACAACAAGGAACTCTTCCCATTTCTCTATATA
65 AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATG
7083139 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGC
130 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGC
7083193 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTA
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTA
7083244 GATTTACTCA
Statistics
Matches: 563, Mismatches: 30, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
181 1 0.00
182 340 0.60
183 7 0.01
184 214 0.38
185 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.36
Consensus pattern (183 bp):
TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAAGTCTTTTTCAGGA
GACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATGA
TCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGC
Found at i:7082953 original size:274 final size:274
Alignment explanation
Indices: 7082461--7083244 Score: 1295
Period size: 274 Copynumber: 2.9 Consensus size: 274
7082451 GAGTCATTTT
* * *
7082461 TTTGTCACAACAAGGAACTCTTCCCATTTCTCTGTATAATCCTTCAGCTTAGAGTCTTTTTCAGG
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTTTTCAGG
* *
7082526 AGACCATGGCCCTTTCTTCACATTTGTTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATG
66 AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATA
**
7082591 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTGGCATTTGCTTTGTCACAAC
131 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAAC
*
7082656 AAGGAACTCTCCCCATTTCTCTATATGATCCTTCAGCTTAGTCTTCTTCAG-GAGACCATGGCCC
196 AAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGTCTTCTTC-GTGAGACCATGGCCC
**
7082720 TTTCTTGGCATTTGC
260 TTTCTTCACATTTGC
* *
7082735 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATGATCCTTCAGCTTAGAGTCTTCTTCAGG
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTTTTCAGG
*
7082800 AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATA
66 AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATA
* * *
7082865 ATCTTTCAGCTTAGAGTCTT-TT-AGGAGACCATGGCCCTTTCTTCACATTTTCTTCGTCACAAC
131 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAAC
* * *
7082928 AAGGAAATCTCCCCATTTCTCTCTATCATCCTTCAGCTTAGAGTCTTCTTCGTGAGACCATGGCC
196 AAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTT--AGTCTTCTTCGTGAGACCATGGCC
7082993 CTTTCTTCACATTTGC
259 CTTTCTTCACATTTGC
*
7083009 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCTTTCAGCTTAGAGTCTTTTTCAGG
1 TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTTTTCAGG
* * * *
7083074 AGACCATCGCCCTCTCTTCACATTTTCTTTGTCACAACAAGGAACTCTTCCCATTTCTCTATATA
66 AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATA
7083139 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAAC
131 ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAAC
*
7083204 AAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAG
196 AAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAG
7083245 ATTTACTCAC
Statistics
Matches: 472, Mismatches: 33, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
272 73 0.15
273 3 0.01
274 320 0.68
275 2 0.00
276 74 0.16
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.36
Consensus pattern (274 bp):
TTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTTTTCAGG
AGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATA
ATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAAC
AAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGTCTTCTTCGTGAGACCATGGCCCT
TTCTTCACATTTGC
Found at i:7085887 original size:30 final size:31
Alignment explanation
Indices: 7085840--7085901 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
7085830 TTAAAAGAAT
*
7085840 AATACAATATTATTAAGAAAAATATACCAAA
1 AATACAATATTATTAAGAAAAATAAACCAAA
*
7085871 AATA-AATA-TATATAAGATAAATAAACCAAA
1 AATACAATATTAT-TAAGAAAAATAAACCAAA
7085901 A
1 A
7085902 CAACACCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 3 0.11
30 21 0.75
31 4 0.14
ACGTcount: A:0.65, C:0.08, G:0.03, T:0.24
Consensus pattern (31 bp):
AATACAATATTATTAAGAAAAATAAACCAAA
Found at i:7096474 original size:17 final size:17
Alignment explanation
Indices: 7096452--7096484 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7096442 AAATATTTTC
7096452 CTAAATT-TTATTTTTAT
1 CTAAATTATT-TTTTTAT
7096469 CTAAATTATTTTTTTA
1 CTAAATTATTTTTTTA
7096485 GTATTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
CTAAATTATTTTTTTAT
Found at i:7100951 original size:26 final size:26
Alignment explanation
Indices: 7100915--7101019 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
7100905 TACAAATTGG
7100915 TAATGGATTAGGTAAATGTTCCATGA
1 TAATGGATTAGGTAAATGTTCCATGA
*
7100941 TAATGGATTAGGTAAATATTCCATGA
1 TAATGGATTAGGTAAATGTTCCATGA
* *
7100967 TAATGGGTTTGGTAAATGTTCCATGA
1 TAATGGATTAGGTAAATGTTCCATGA
*
7100993 TAATGGGTTAGGTAAATGTTCCATGA
1 TAATGGATTAGGTAAATGTTCCATGA
7101019 T
1 T
7101020 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TAATGGATTAGGTAAATGTTCCATGA
Found at i:7109180 original size:25 final size:23
Alignment explanation
Indices: 7109151--7109215 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
7109141 AATAAAAAAC
*
7109151 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
7109176 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
7109197 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
7109216 AAAATGAGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:7109214 original size:19 final size:20
Alignment explanation
Indices: 7109177--7109215 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7109167 TCAAATACAT
7109177 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
7109197 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
7109216 AAAATGAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:7109270 original size:40 final size:40
Alignment explanation
Indices: 7109195--7109270 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
7109185 TAAAAACAAA
*
7109195 TATTAAAACAAAAAATAAATAAAAATGAGACTAAAATAAT
1 TATTAAAACAAAAAATAAATAAAAATGAGAATAAAATAAT
* * * *
7109235 TATTAAAATAATATATAAATTAAAAAT-ATAATAAAA
1 TATTAAAACAAAAAATAAA-TAAAAATGAGAATAAAA
7109271 AAGTAATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 23 0.77
41 7 0.23
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (40 bp):
TATTAAAACAAAAAATAAATAAAAATGAGAATAAAATAAT
Found at i:7109677 original size:3 final size:3
Alignment explanation
Indices: 7109669--7109752 Score: 59
Period size: 3 Copynumber: 28.3 Consensus size: 3
7109659 AATATAGCAA
* * *
7109669 AAT AAT AAT AAT AA- AAG AAT AA- AGAT AAT AGT AAT CAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * *
7109712 AACT -AT AAT AGT AAT AAT AAT ATT AAT CAAT GAT AAT AAT A
1 AA-T AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A
7109753 GTATCAATAA
Statistics
Matches: 63, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
2 6 0.10
3 52 0.83
4 5 0.08
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7109713 original size:23 final size:23
Alignment explanation
Indices: 7109670--7109734 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
7109660 ATATAGCAAA
* *
7109670 ATAATAATAATAA-AAGAATAAAG
1 ATAATAGTAATAATAA-TATAAAG
* **
7109693 ATAATAGTAATCATAATATAACT
1 ATAATAGTAATAATAATATAAAG
7109716 ATAATAGTAATAATAATAT
1 ATAATAGTAATAATAATAT
7109735 TAATCAATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 33 0.94
24 2 0.06
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (23 bp):
ATAATAGTAATAATAATATAAAG
Found at i:7114407 original size:2 final size:2
Alignment explanation
Indices: 7114400--7114450 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
7114390 TAATTTTGGT
7114400 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7114442 CA TA TA TA T
1 TA TA TA TA T
7114451 TATTTGGTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7114518 original size:12 final size:13
Alignment explanation
Indices: 7114494--7114536 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
7114484 CTCTACAATT
7114494 TTAATAGTTTAATC
1 TTAATA-TTTAATC
7114508 TTAA-ATTTAAT-
1 TTAATATTTAATC
7114519 TTAATATTT-ATC
1 TTAATATTTAATC
7114531 TTAATA
1 TTAATA
7114537 GTATTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 6 0.22
12 16 0.59
13 1 0.04
14 4 0.15
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (13 bp):
TTAATATTTAATC
Found at i:7114544 original size:23 final size:24
Alignment explanation
Indices: 7114491--7114560 Score: 63
Period size: 23 Copynumber: 2.9 Consensus size: 24
7114481 GGTCTCTACA
*
7114491 ATTTTAATAGTTTAATCTTAAATTT
1 ATTTTAATA-TTTAATCTTAAATGT
*
7114516 AATTTAATATTT-ATCTT-AATAGT
1 ATTTTAATATTTAATCTTAAAT-GT
* *
7114539 ATTTTATTATTTTAATATTAAA
1 ATTTTAATA-TTTAATCTTAAA
7114561 GTGACTAAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
22 3 0.08
23 13 0.36
24 6 0.17
25 12 0.33
26 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (24 bp):
ATTTTAATATTTAATCTTAAATGT
Found at i:7116352 original size:3 final size:3
Alignment explanation
Indices: 7116344--7116394 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
7116334 ATCAATAAAC
7116344 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7116392 TTA
1 TTA
7116395 CAAGGGTTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7116663 original size:39 final size:41
Alignment explanation
Indices: 7116598--7116677 Score: 128
Period size: 39 Copynumber: 2.0 Consensus size: 41
7116588 GATTCAATAT
*
7116598 TTTGATTCACTCACACATTATTATATGTAATAATATTGAAG
1 TTTGATTCACTCACACATTATTATATGGAATAATATTGAAG
*
7116639 TTTGATTCAC-C-CACGTTATTATATGGAATAATATTGAAG
1 TTTGATTCACTCACACATTATTATATGGAATAATATTGAAG
7116678 ATGATCGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 26 0.70
40 1 0.03
41 10 0.27
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (41 bp):
TTTGATTCACTCACACATTATTATATGGAATAATATTGAAG
Found at i:7118902 original size:22 final size:21
Alignment explanation
Indices: 7118870--7118920 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7118860 ATTTTAAATT
* * *
7118870 TTATTAGTATTATGGGATAAAA
1 TTATTACTATTA-GGAAAAAAA
7118892 TTATTACTATTAGGAAAAAAA
1 TTATTACTATTAGGAAAAAAA
*
7118913 ATATTACT
1 TTATTACT
7118921 GTATATATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39
Consensus pattern (21 bp):
TTATTACTATTAGGAAAAAAA
Found at i:7121141 original size:59 final size:59
Alignment explanation
Indices: 7121075--7121210 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 59
7121065 CCAACTGTGT
**
7121075 TGATATGGGCAAGGCCAAATATA-TCTCG-ACTTGTATA-GGGCTACGGCCCAGATTGGTAC
1 TGATATGGGCAAGGCCAAATATACTCT-GTA-TTGTA-AGGGGCTACGGCCCAGATTAATAC
* * * * *
7121134 TGATATGGGCTAGGCCTAGTATACTCTGTTATTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCAAATATACTCTG-TATTGTAAGGGGCTACGGCCCAGATTAATAC
7121194 TGATATGGGCTAAGGCC
1 TGATATGGGC-AAGGCC
7121211 CAGTTAACAC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
59 22 0.34
60 36 0.56
61 6 0.09
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (59 bp):
TGATATGGGCAAGGCCAAATATACTCTGTATTGTAAGGGGCTACGGCCCAGATTAATAC
Found at i:7121904 original size:16 final size:17
Alignment explanation
Indices: 7121870--7121904 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
7121860 TACATCAAGA
7121870 ATGGTTTTCAATGAAAAC
1 ATGGTTTTCAA-GAAAAC
7121888 ATGGTTTTCAA-AAAAC
1 ATGGTTTTCAAGAAAAC
7121904 A
1 A
7121905 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
18 11 0.65
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (17 bp):
ATGGTTTTCAAGAAAAC
Found at i:7122524 original size:2 final size:2
Alignment explanation
Indices: 7122517--7122551 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7122507 GCGCTAAAAC
*
7122517 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7122552 GTAGTTGGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7122756 original size:19 final size:21
Alignment explanation
Indices: 7122727--7122776 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 21
7122717 CATAATATGT
*
7122727 ACATGATATATATAAAA-AT-G
1 ACATAATATAT-TAAAATATAG
7122747 -CATAATATATTAAAATATAG
1 ACATAATATATTAAAATATAG
7122767 ACATAATATA
1 ACATAATATA
7122777 CATATATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.19
19 11 0.42
20 1 0.04
21 9 0.35
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (21 bp):
ACATAATATATTAAAATATAG
Found at i:7122785 original size:2 final size:2
Alignment explanation
Indices: 7122772--7122802 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7122762 TATAGACATA
*
7122772 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7122803 ATGTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7122885 original size:17 final size:17
Alignment explanation
Indices: 7122863--7122915 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
7122853 AAAGGCAAAT
*
7122863 TAAATGACTAAATAAAA
1 TAAATGAATAAATAAAA
* * *
7122880 TAAATGAGTTAATAATA
1 TAAATGAATAAATAAAA
7122897 -AAATGAATAAAT-AAA
1 TAAATGAATAAATAAAA
7122912 TAAA
1 TAAA
7122916 GATAAAAAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 2 0.07
16 13 0.45
17 14 0.48
ACGTcount: A:0.64, C:0.02, G:0.08, T:0.26
Consensus pattern (17 bp):
TAAATGAATAAATAAAA
Found at i:7124471 original size:43 final size:43
Alignment explanation
Indices: 7124410--7124564 Score: 163
Period size: 43 Copynumber: 3.6 Consensus size: 43
7124400 AATTTCCAGC
*
7124410 CTGTTACCCTACTGCTTAGGGGTTTAGGCTCATCGTTTTTGAT
1 CTGTTACCCTACTACTTAGGGGTTTAGGCTCATCGTTTTTGAT
* * * * * *
7124453 CTGTTTCCCTACTACTTAGGGGGTTAAGATC-T-GTAAATTT-AGC
1 CTGTTACCCTACTACTTAGGGGTTTAGGCTCATCGT--TTTTGA-T
* *
7124496 CTGTTACCCTACTGCTTAGGGGTTTAGGCTCATCGCTTTTGAT
1 CTGTTACCCTACTACTTAGGGGTTTAGGCTCATCGTTTTTGAT
* *
7124539 CTATTTCCCTACTACTTAGGGGTTTA
1 CTGTTACCCTACTACTTAGGGGTTTA
7124565 AGATCTGTAA
Statistics
Matches: 88, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 81 0.92
44 2 0.02
45 1 0.01
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.40
Consensus pattern (43 bp):
CTGTTACCCTACTACTTAGGGGTTTAGGCTCATCGTTTTTGAT
Found at i:7124727 original size:44 final size:43
Alignment explanation
Indices: 7124676--7124828 Score: 125
Period size: 44 Copynumber: 3.5 Consensus size: 43
7124666 CAGCCTCTAA
*
7124676 CCCTACTGGTTAGGGGTTTAAGGCACATCTTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGC-CATCTTCTTCGATCTGTTT
* ** * * *
7124720 CCCTACTGCTTA-GGGTGATAA-G--ATCTGTAAATCCAGCCTGTTA
1 CCCTACTGCTTAGGGGT-TTAAGGCCATCT-T-CTTCGA-TCTGTTT
* * *
7124763 CCCTACTGCTTAAGGGTTTAAAGCCCATCTTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTT-AAGGCCATCTTCTTCGATCTGTTT
*
7124807 CCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTAGGGGTTTAAG
7124829 ATCTGTAAAT
Statistics
Matches: 83, Mismatches: 17, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
40 4 0.05
41 1 0.01
42 3 0.04
43 26 0.31
44 42 0.51
45 2 0.02
46 1 0.01
47 4 0.05
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGTTTAAGGCCATCTTCTTCGATCTGTTT
Found at i:7124727 original size:87 final size:87
Alignment explanation
Indices: 7124404--7124838 Score: 558
Period size: 87 Copynumber: 5.0 Consensus size: 87
7124394 CTTTGTAATT
* *
7124404 TCCAGCCTGTTACCCTACTGCTTAGGGGTTT-AGGCTCATCGTT-TTTGATCTGTTTCCCTACTA
1 TCCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATC-TTCTTCGATCTGTTTCCCTACTG
7124467 CTTAGGGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
** *
7124490 TTTAGCCTGTTACCCTACTGCTTAGGGGTTT-AGGCTCATCGCTT-TT-GATCTATTTCCCTACT
1 TCCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCAT--CTTCTTCGATCTGTTTCCCTACT
* *
7124552 ACTTAGGGGTTTAAGATCTGTAAA
64 GCTTAGGGGGTTAAGATCTGTAAA
* * ** ** *
7124576 TTTTCAGCCTGTTACCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTCGATCTGTTTCCTTACT
1 --TCCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCTTCTTCGATCTGTTTCCCTACT
*
7124640 GCTTAGGGGGTTTAGATCTGTAAA
64 GCTTAGGGGGTTAAGATCTGTAAA
* * * *
7124664 TCCAGCCTCTAACCCTACTGGTTAGGGGTTTAAGGCACATCTTCTTCGATCTGTTTCCCTACTGC
1 TCCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCTTCTTCGATCTGTTTCCCTACTGC
* *
7124729 TTAGGGTGATAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * *
7124751 TCCAGCCTGTTACCCTACTGCTTAAGGGTTTAAAGCCCATCTTCTTTGATCTGTTTCCCTACTGC
1 TCCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCTTCTTCGATCTGTTTCCCTACTGC
7124816 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
7124838 T
1 T
7124839 TCACCGATCT
Statistics
Matches: 304, Mismatches: 37, Indels: 15
0.85 0.10 0.04
Matches are distributed among these distances:
86 100 0.33
87 136 0.45
88 68 0.22
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (87 bp):
TCCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCTTCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:7127152 original size:27 final size:27
Alignment explanation
Indices: 7127087--7127265 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
7127077 TTTGGTTTAC
7127087 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
7127113 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
7127140 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
7127167 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
7127194 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
7127221 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
7127248 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
7127266 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:7127208 original size:81 final size:80
Alignment explanation
Indices: 7127087--7127319 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 80
7127077 TTTGGTTTAC
* *
7127087 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCTTGGTTTGTAAAATTACCAA
*
7127151 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* *
7127167 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCA
7127231 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* ** ** ** * **
7127248 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
*
7127313 AGTACCC
65 AATACCC
7127320 TCGATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 19 0.15
81 109 0.84
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:7127334 original size:27 final size:27
Alignment explanation
Indices: 7127288--7127660 Score: 304
Period size: 27 Copynumber: 13.9 Consensus size: 27
7127278 ATTATTGAAA
* * * ***
7127288 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
*
7127315 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
7127342 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCATTT
*
7127369 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
7127396 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAGAATTACCATTT
* * *
7127423 TACCC-CTGATTTACATAATTATCATTT
1 TACCCTC-GATTTATAGAATTACCATTT
* * *
7127450 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * * *
7127477 TACCCACAATTTACATAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
7127504 TACCCT-GATTTACATAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
7127530 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
7127557 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
**
7127584 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
** * **
7127611 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
7127638 TACCCTCGATTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACC
7127661 GAAATACCCT
Statistics
Matches: 298, Mismatches: 43, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 26 0.09
27 270 0.91
28 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:7127668 original size:27 final size:27
Alignment explanation
Indices: 7127082--7127778 Score: 162
Period size: 27 Copynumber: 25.8 Consensus size: 27
7127072 AATACTTTGG
* *
7127082 TTTACAAAATTACCAAAATACCCT-GC
1 TTTACAAAATTACCGAAATACCCTCGA
** ** * *
7127108 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCGAAATACCCTCGA
* * *
7127135 TTTATAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCGAAATACCCTCGA
** * *
7127161 GTTTGTAAAATTACCAAAATACCC-CTA
1 -TTTACAAAATTACCGAAATACCCTCGA
** * * *
7127188 GTTTGTAAAATTATCAAAATACCC-CTA
1 -TTTACAAAATTACCGAAATACCCTCGA
** * *
7127215 GTTTGTAAAATTACCAAAATACCC-CTAA
1 -TTTACAAAATTACCGAAATACCCTC-GA
*** *
7127243 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
** ** **
7127270 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* **
7127297 CTTGTAAAATTACC-AAAGTACCCTCGA
1 TTTACAAAATTACCGAAA-TACCCTCGA
* * ***
7127324 TTTATAGAATTACCGTTTTACCCTC-A
1 TTTACAAAATTACCGAAATACCCTCGA
* * **
7127350 GTTTACAGAATTA-CTATTTTACCCTCGA
1 -TTTACAAAATTACCGA-AATACCCTCGA
* * *** *
7127378 TTTATAGAATTACCGTTTTACCC-CTAA
1 TTTACAAAATTACCGAAATACCCTC-GA
* ***
7127405 TTTACATAATTACCGTTTTACCC-CTGA
1 TTTACAAAATTACCGAAATACCCTC-GA
* * **
7127432 TTTACATAATTATC-ATTTTACCCTCGA
1 TTTACAAAATTACCGA-AATACCCTCGA
* * *** * *
7127459 CTTACAGAATTACCGTTTTACCCACAA
1 TTTACAAAATTACCGAAATACCCTCGA
* ***
7127486 TTTACATAATTACCGTTTTACCCT-GA
1 TTTACAAAATTACCGAAATACCCTCGA
* * ***
7127512 TTTACATAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* * ***
7127539 CTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* ***
7127566 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* * * *** **
7127593 TTTATAGAATTACTGTTTTACCCTTAA
1 TTTACAAAATTACCGAAATACCCTCGA
* * ***
7127620 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
*
7127647 TTTACAAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACCGAAATACCCTCGA
** *
7127674 TTTGTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCGAAATACCCTC-GA
* * *
7127701 TTTACAAAGTTACAGAAATACCCTTGA
1 TTTACAAAATTACCGAAATACCCTCGA
** * * * *
7127728 CTTTTTA-AAAATTATAGAAGTACCATTGG
1 ---TTTACAAAATTACCGAAATACCCTCGA
*
7127757 TTTACAAAATTACTGAAATACC
1 TTTACAAAATTACCGAAATACC
7127779 TTTGGTTTGT
Statistics
Matches: 562, Mismatches: 88, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
26 56 0.10
27 480 0.85
28 5 0.01
29 17 0.03
30 4 0.01
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACCGAAATACCCTCGA
Found at i:7127671 original size:81 final size:82
Alignment explanation
Indices: 7127315--7127661 Score: 449
Period size: 81 Copynumber: 4.3 Consensus size: 82
7127305 ATTACCAAAG
*
7127315 TACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACT-ATTTTACCCTCGA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACTCATTTTACCCTCGA
* *
7127378 TTTATAGAATTACCGTTT
65 CTTACAGAATTACCGTTT
* * *
7127396 TACCC-CTAATTTACATAATTACCGTTTTACCC-CTGATTTACATAATTA-TCATTTTACCCTCG
1 TACCCTC-GATTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTACTCATTTTACCCTCG
7127458 ACTTACAGAATTACCGTTT
64 ACTTACAGAATTACCGTTT
* * * * *
7127477 TACCCACAATTTACATAATTACCGTTTTACCCT-GATTTACATAATTA-TCGTTTTACCCTCGAC
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTCATTTTACCCTCGAC
7127540 TTACAGAATTACCGTTT
66 TTACAGAATTACCGTTT
* * ** *
7127557 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACT-GTTTTACCCTTAAT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTCATTTTACCCTCGAC
*
7127621 TTACAGAATTACTGTTT
66 TTACAGAATTACCGTTT
*
7127638 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTACAGAATTACCG
7127662 AAATACCCTC
Statistics
Matches: 241, Mismatches: 17, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
80 79 0.33
81 159 0.66
82 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (82 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTCATTTTACCCTCGAC
TTACAGAATTACCGTTT
Found at i:7127686 original size:54 final size:54
Alignment explanation
Indices: 7127315--7127676 Score: 442
Period size: 54 Copynumber: 6.7 Consensus size: 54
7127305 ATTACCAAAG
* * **
7127315 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
* *
7127369 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-AATTTACAGAATTACCGTTT
* * * * *
7127423 TACCC-CTGATTTACATAATTATCATTTTACCCTCGACTTACAGAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
* * * * * *
7127477 TACCCACAATTTACATAATTACCGTTTTACCCT-GATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
* *
7127530 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
* * * *
7127584 TACCCTCGATTTATAGAATTACTGTTTTACCCTTAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
* ***
7127638 TACCCTCGATTTACAAAATTACCGAAATACCCTCAATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTT
7127677 GTAAAATTAC
Statistics
Matches: 267, Mismatches: 36, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
53 48 0.18
54 217 0.81
55 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
Found at i:7127696 original size:81 final size:81
Alignment explanation
Indices: 7127540--7127706 Score: 199
Period size: 81 Copynumber: 2.1 Consensus size: 81
7127530 TACCCTCGAC
* *** * *
7127540 TTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTA
1 TTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTATAAAATTA
***** *
7127605 CTGTTTTACCCTTAAT
66 CCAAAATACCCCTAAT
* *
7127621 TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTA
1 TTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTATAAAATTA
*
7127686 CCAAAATACCCCTGAT
66 CCAAAATACCCCTAAT
7127702 TTACA
1 TTACA
7127707 AAGTTACAGA
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (81 bp):
TTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTATAAAATTA
CCAAAATACCCCTAAT
Found at i:7127783 original size:27 final size:26
Alignment explanation
Indices: 7127731--7127786 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
7127721 CCCTTGACTT
*
7127731 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
7127757 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
7127784 TTT
1 TTT
7127787 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:7127904 original size:27 final size:27
Alignment explanation
Indices: 7127840--7127904 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
7127830 ACCCCTAAAA
* *
7127840 GGTAAAAAGACCGTAAAGCTCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
7127867 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
7127894 GGTAAAATGAC
1 GGTAAAATGAC
7127905 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:7129092 original size:25 final size:25
Alignment explanation
Indices: 7129063--7129110 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7129053 TTATAATATG
* * *
7129063 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
7129088 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
7129111 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:7129179 original size:20 final size:20
Alignment explanation
Indices: 7129154--7129212 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
7129144 TAAATATGGT
7129154 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
7129174 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
7129194 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
7129213 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:7129290 original size:24 final size:24
Alignment explanation
Indices: 7129263--7129429 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
7129253 GAGGAAGTGA
7129263 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
7129287 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
7129311 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
7129335 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
7129358 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
7129382 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
7129406 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
7129430 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:7129380 original size:71 final size:71
Alignment explanation
Indices: 7129263--7129430 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
7129253 GAGGAAGTGA
7129263 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
7129328 AGTTATC
65 AGTTATC
** *
7129335 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
7129400 GTTATT
66 GTTATC
*
7129406 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
7129431 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:7129659 original size:31 final size:31
Alignment explanation
Indices: 7129621--7129715 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
7129611 CGTTTACAGT
*
7129621 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
7129652 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
7129683 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
7129714 AA
1 AA
7129716 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:7137564 original size:22 final size:22
Alignment explanation
Indices: 7137522--7137564 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7137512 CAGCGCCGTT
* *
7137522 TTAAGTTCTTCTATCTTCTCTC
1 TTAAGTTCTTCGATCTGCTCTC
7137544 TTAA-TTCTTCGATTCTGCTCT
1 TTAAGTTCTTCGA-TCTGCTCT
7137565 GACTAGCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.14, C:0.26, G:0.07, T:0.53
Consensus pattern (22 bp):
TTAAGTTCTTCGATCTGCTCTC
Found at i:7141313 original size:2 final size:2
Alignment explanation
Indices: 7141306--7141330 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7141296 GCGCTAAAAC
7141306 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7141331 GTATTTGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7141434 original size:26 final size:26
Alignment explanation
Indices: 7141385--7141455 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
7141375 AGAAAATGTT
* * *
7141385 ATAATAATAATAGTAATAATACAATG
1 ATAATAATAATAATAAAAAAACAATG
* *
7141411 ATAATGATAATAATAAAAAAACAATT
1 ATAATAATAATAATAAAAAAACAATG
*
7141437 ATTAATAATATTACATAAA
1 A-TAATAATAATA-ATAAA
7141456 TATATATTGA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 22 0.61
27 9 0.25
28 5 0.14
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (26 bp):
ATAATAATAATAATAAAAAAACAATG
Found at i:7141530 original size:20 final size:19
Alignment explanation
Indices: 7141507--7141558 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
7141497 ACAATATATG
*
7141507 TACATGATATATATAAAAAA
1 TACATAATATAT-TAAAAAA
7141527 TACATAATATATTAAAATATA
1 TACATAATATATTAAAA-A-A
*
7141548 GACATAATATA
1 TACATAATATA
7141559 CATAAATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 5 0.18
20 12 0.43
21 11 0.39
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.33
Consensus pattern (19 bp):
TACATAATATATTAAAAAA
Found at i:7141568 original size:51 final size:55
Alignment explanation
Indices: 7141440--7141577 Score: 142
Period size: 51 Copynumber: 2.5 Consensus size: 55
7141430 AACAATTATT
* * *
7141440 AATAATATTACATAAATATATATTGAAAATAAATATATGATAATATTAAAAGTATATAC
1 AATAATA-TACATAAATATATA-T--AAATAAATACATAATAATATTAAAAGTATAGAC
* *
7141499 AATATATGTACAT-GATATATATAAA-AAATACATAAT-ATATTAAAA-TATAGAC
1 AATA-ATATACATAAATATATATAAATAAATACATAATAATATTAAAAGTATAGAC
*
7141551 -ATAATATACATAAATATATATATATAA
1 AATAATATACATAAATATATATAAATAA
7141578 TGTTTAAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
50 7 0.10
51 13 0.19
52 8 0.12
53 9 0.13
54 9 0.13
55 3 0.04
57 1 0.01
58 7 0.10
59 9 0.13
60 2 0.03
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (55 bp):
AATAATATACATAAATATATATAAATAAATACATAATAATATTAAAAGTATAGAC
Found at i:7141578 original size:23 final size:21
Alignment explanation
Indices: 7141528--7141570 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7141518 TATAAAAAAT
*
7141528 ACATAATATATTAAAATATAG
1 ACATAATATAATAAAATATAG
7141549 ACATAATATACATAAATATATA
1 ACATAATATA-ATAAA-ATATA
7141571 TATATAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 4 0.21
23 5 0.26
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (21 bp):
ACATAATATAATAAAATATAG
Found at i:7143228 original size:2 final size:2
Alignment explanation
Indices: 7143221--7143261 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7143211 TTGTTGATAC
7143221 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7143262 TTCAATAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7145113 original size:25 final size:25
Alignment explanation
Indices: 7145053--7145115 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
7145043 TCGTCGTTTC
7145053 AATAA-AAATTAAAAATAATAAATG
1 AATAATAAATTAAAAATAATAAATG
* *
7145077 AATAATATATTAAAAATAATTAAATT
1 AATAATAAATTAAAAATAA-TAAATG
*
7145103 AA-GATAAATTAAA
1 AATAATAAATTAAA
7145116 TTTATTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (25 bp):
AATAATAAATTAAAAATAATAAATG
Found at i:7145442 original size:29 final size:31
Alignment explanation
Indices: 7145410--7145471 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 31
7145400 TTTGAAATTT
*
7145410 AAAATTTAATTTTTAT-ATTTT-TATTTTAA
1 AAAATTTAATTTTTATAATTTTAGATTTTAA
*
7145439 AAAATTTAATTTTTTTAATTTTAGATTTTAA
1 AAAATTTAATTTTTATAATTTTAGATTTTAA
7145470 AA
1 AA
7145472 TTCAAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 15 0.52
30 5 0.17
31 9 0.31
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (31 bp):
AAAATTTAATTTTTATAATTTTAGATTTTAA
Found at i:7152739 original size:23 final size:23
Alignment explanation
Indices: 7152712--7152767 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 23
7152702 TTACCCTTGA
7152712 AAAACAGCCCACAC-ACAAAAA-AC
1 AAAACA-CCCAC-CTACAAAAACAC
7152735 AAAACCACCCACCTACAAAAACCAC
1 AAAA-CACCCACCTACAAAAA-CAC
7152760 AAAACACC
1 AAAACACC
7152768 ACAGACCCCG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 1 0.03
23 16 0.55
24 6 0.21
25 6 0.21
ACGTcount: A:0.57, C:0.39, G:0.02, T:0.02
Consensus pattern (23 bp):
AAAACACCCACCTACAAAAACAC
Found at i:7159354 original size:47 final size:47
Alignment explanation
Indices: 7159290--7159400 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
7159280 GACATTGAGT
*
7159290 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
7159337 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
7159384 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
7159401 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:7166606 original size:47 final size:47
Alignment explanation
Indices: 7166542--7166652 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
7166532 GACATTGAGT
*
7166542 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
7166589 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
7166636 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
7166653 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:7169871 original size:2 final size:2
Alignment explanation
Indices: 7169864--7169888 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7169854 CGTATATTTG
7169864 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7169889 TTGTATGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7171539 original size:3 final size:3
Alignment explanation
Indices: 7171503--7171995 Score: 287
Period size: 3 Copynumber: 161.3 Consensus size: 3
7171493 CTATTTTTGG
* * * *
7171503 TAT TCT TAT TAT AAT TAAT TCT TAT CATT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
*
7171550 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TATT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * * * *
7171595 TGT TAT T-T TAT TAT TAC TAT TAT TCT TAT TAGT GTAT TAT TAC TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT
* * * * * * *
7171641 TAC CACT T-T CTAT CTAT TAT AAT TA- TCT TAT T-T AAAA TAT TGT TAT
1 TAT TA-T TAT -TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* *
7171687 TAT TAT TAT TAT TA- TAGC AAT TAT ATAT TAT TAT GGTAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT -TAT TAT TAT --TAT TAT TAT TAT
* * * * * *
7171734 TA- CATT TAT TGT TAG TAT TAG TAT TAAT TAT AAT TAT TAT TAT TAC
1 TAT TA-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
7171780 CAT TA- TAT TGAT TAC TAT TAT TAG TAT TAT TAT T-T TCTT TAG TAC
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
* * **
7171825 TA- TAT CTAT TAT TA- TAT TAT TTT TCT TAT TAAT GTGC TAT TAT T-T
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT
*
7171870 CCTACT TAAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 --TA-T T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
7171919 TAT TAT TAT TAT TAT TAT TAT TAT TAT CAC TAT TAC TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7171967 TAT TAT T-T T-T TAC TAT TAT AAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7171996 GACCTTTTAT
Statistics
Matches: 378, Mismatches: 75, Indels: 74
0.72 0.14 0.14
Matches are distributed among these distances:
2 25 0.07
3 310 0.82
4 35 0.09
5 7 0.02
6 1 0.00
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:7171734 original size:19 final size:19
Alignment explanation
Indices: 7171684--7171735 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
7171674 AAAATATTGT
7171684 TATTATTATTATTATTATAG
1 TATT-TTATTATTATTATAG
* * *
7171704 CA-ATTATATATTATTATGG
1 TATTTTAT-TATTATTATAG
7171723 TATTTTATTATTA
1 TATTTTATTATTA
7171736 CATTTATTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
18 4 0.16
19 16 0.64
20 5 0.20
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.58
Consensus pattern (19 bp):
TATTTTATTATTATTATAG
Found at i:7173611 original size:75 final size:74
Alignment explanation
Indices: 7173489--7173626 Score: 249
Period size: 75 Copynumber: 1.9 Consensus size: 74
7173479 ATTAATTCGG
*
7173489 GGTCTTTTGGTCTCAAAAGGGGATCCCTTTTTGTGACAAAATTTCTACTTCTAGAGACGTATTCG
1 GGTCTTTTGGTCTCAAAAGGGGATCCCTTTGTGTGACAAAATTTCTACTTCTAGAGACGTATTCG
7173554 GGGTCTTTT
66 GGGTCTTTT
*
7173563 GGTCTTTTGGTTCTCAACAGGGGATCCCTTTGTGTGACAAAATTTCTACTTCTAGAGACGTATT
1 GGTCTTTTGG-TCTCAAAAGGGGATCCCTTTGTGTGACAAAATTTCTACTTCTAGAGACGTATT
7173627 GAATTTGAGA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
74 10 0.16
75 51 0.84
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.38
Consensus pattern (74 bp):
GGTCTTTTGGTCTCAAAAGGGGATCCCTTTGTGTGACAAAATTTCTACTTCTAGAGACGTATTCG
GGGTCTTTT
Found at i:7177348 original size:2 final size:2
Alignment explanation
Indices: 7177341--7177370 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7177331 TGTTGATGAA
7177341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7177371 TACTTGTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7186128 original size:7 final size:7
Alignment explanation
Indices: 7186118--7186226 Score: 53
Period size: 7 Copynumber: 15.0 Consensus size: 7
7186108 ATTTGGTATT
7186118 TAAATAA
1 TAAATAA
*
7186125 TAAAAAA
1 TAAATAA
7186132 TATAA-AA
1 TA-AATAA
* *
7186139 GAATTAA
1 TAAATAA
*
7186146 TATATAA
1 TAAATAA
7186153 TAAAATAA
1 T-AAATAA
7186161 TTAAA-AA
1 -TAAATAA
7186168 T-AATAA
1 TAAATAA
7186174 TTTAGAATAA
1 --TA-AATAA
*
7186184 AAAATAA
1 TAAATAA
*
7186191 TACATAA
1 TAAATAA
*
7186198 TAAAAAA
1 TAAATAA
*
7186205 TAAGTAA
1 TAAATAA
*
7186212 TTAATAA
1 TAAATAA
7186219 TATAATAA
1 TA-AATAA
7186227 ACATATAATA
Statistics
Matches: 75, Mismatches: 17, Indels: 19
0.68 0.15 0.17
Matches are distributed among these distances:
5 2 0.03
6 4 0.05
7 46 0.61
8 17 0.23
9 1 0.01
10 5 0.07
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (7 bp):
TAAATAA
Found at i:7186156 original size:28 final size:28
Alignment explanation
Indices: 7186121--7186189 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
7186111 TGGTATTTAA
*
7186121 ATAATAAAAAATATAAAAGA-ATTAATAT
1 ATAATAAAAAATATAAAA-ATAATAATAT
*
7186149 ATAATAAAATAAT-TAAAAATAATAATTT
1 ATAATAAAA-AATATAAAAATAATAATAT
*
7186177 AGAATAAAAAATA
1 ATAATAAAAAATA
7186190 ATACATAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 4 0.11
28 28 0.80
29 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (28 bp):
ATAATAAAAAATATAAAAATAATAATAT
Found at i:7186157 original size:19 final size:18
Alignment explanation
Indices: 7186127--7186192 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 18
7186117 TTAAATAATA
7186127 AAAAAT-ATAAAAGAATT
1 AAAAATAATAAAAGAATT
* *
7186144 AATATATAATAAAATAATT
1 AA-AAATAATAAAAGAATT
* *
7186163 AAAAATAATAATTTAGAATA
1 AAAAATAATAA--AAGAATT
7186183 AAAAATAATA
1 AAAAATAATA
7186193 CATAATAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
17 2 0.05
18 11 0.28
19 12 0.31
20 14 0.36
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAAATAATAAAAGAATT
Found at i:7186287 original size:7 final size:7
Alignment explanation
Indices: 7186266--7186536 Score: 108
Period size: 7 Copynumber: 38.9 Consensus size: 7
7186256 ATAATTTCAA
7186266 AATATAT
1 AATATAT
7186273 AATA-AT
1 AATATAT
7186279 AATATAT
1 AATATAT
*
7186286 AAAATA-
1 AATATAT
*
7186292 AATAATTT
1 AAT-ATAT
7186300 ACATAGTA-
1 A-ATA-TAT
*
7186308 AATAAAAT
1 AAT-ATAT
7186316 AATTATAT
1 AA-TATAT
7186324 AATATAT
1 AATATAT
*
7186331 AATATAA
1 AATATAT
7186338 AAGTATAT
1 AA-TATAT
* * *
7186346 AGGTTTAA
1 A-ATATAT
*
7186354 AAT-TAC
1 AATATAT
7186360 AATA-AT
1 AATATAT
7186366 -ATATAT
1 AATATAT
*
7186372 AGTATAT
1 AATATAT
7186379 AA-ATAATT
1 AATAT-A-T
7186387 AAT-TAAT
1 AATAT-AT
*
7186394 AAAATAT
1 AATATAT
7186401 AATAGT-T
1 AATA-TAT
**
7186408 AA-GGAT
1 AATATAT
7186414 AATA-AT
1 AATATAT
7186420 ATATATAT
1 A-ATATAT
7186428 AATA-AT
1 AATATAT
*
7186434 AATATAA
1 AATATAT
7186441 AATA-AT
1 AATATAT
7186447 AATATAT
1 AATATAT
7186454 -ATA-A-
1 AATATAT
7186458 AATATAT
1 AATATAT
*
7186465 AATAAAT
1 AATATAT
*
7186472 AATATGT
1 AATATAT
7186479 AATA-AT
1 AATATAT
7186485 AATATAT
1 AATATAT
*
7186492 AAAATAAAT
1 --AATATAT
*
7186501 AACATAT
1 AATATAT
*
7186508 AATAAAAT
1 AAT-ATAT
7186516 AATCATAT
1 AAT-ATAT
*
7186524 AACATAT
1 AATATAT
7186531 AATATA
1 AATATA
7186537 AGAAAATAAA
Statistics
Matches: 197, Mismatches: 36, Indels: 62
0.67 0.12 0.21
Matches are distributed among these distances:
5 7 0.04
6 44 0.22
7 94 0.48
8 42 0.21
9 10 0.05
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (7 bp):
AATATAT
Found at i:7186332 original size:20 final size:20
Alignment explanation
Indices: 7186266--7186337 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 20
7186256 ATAATTTCAA
7186266 AATATATAATAATAA-TATAT
1 AATATATAA-AATAATTATAT
*
7186286 AA-A-AT-AAATAATTTACAT
1 AATATATAAAATAA-TTATAT
* *
7186304 AGTAAATAAAATAATTATAT
1 AATATATAAAATAATTATAT
*
7186324 AATATATAATATAA
1 AATATATAAAATAA
7186338 AAGTATATAG
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
16 5 0.12
17 1 0.02
18 7 0.17
19 2 0.05
20 20 0.49
21 6 0.15
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (20 bp):
AATATATAAAATAATTATAT
Found at i:7186487 original size:84 final size:85
Alignment explanation
Indices: 7186360--7186566 Score: 209
Period size: 84 Copynumber: 2.5 Consensus size: 85
7186350 TTAAAATTAC
** * * *
7186360 AATAATATATATAGTATATAAATAATTAATTAATAAAATATAATAGT-TAAGGAT-AATAATATA
1 AATAATATATATAAAATATAAATAAATAATTAATAAAATATAATA-TATAA-AATAAATAACATA
*
7186423 T-ATATAATAATAATATAAAAT
64 TAATAAAATAATAATATAAAAT
**
7186444 AATAATATATATAAAATATATAATAAATAA-T-ATGTAATAATAATATATAAAATAAATAACATA
1 AATAATATATATAAAATATA-AATAAATAATTAATAAAAT-ATAATATATAAAATAAATAACATA
* *
7186507 TAATAAAATAATCATATAACAT
64 TAATAAAATAATAATATAAAAT
*
7186529 -ATAATATA-AGAAAATA-AAATAAATAATT-ATAAAA-ATAA
1 AATAATATATATAAAATATAAATAAATAATTAATAAAATATAA
7186567 ATAAAACATA
Statistics
Matches: 104, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
80 4 0.04
81 9 0.09
82 6 0.06
83 15 0.14
84 45 0.43
85 25 0.24
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (85 bp):
AATAATATATATAAAATATAAATAAATAATTAATAAAATATAATATATAAAATAAATAACATATA
ATAAAATAATAATATAAAAT
Found at i:7186554 original size:68 final size:67
Alignment explanation
Indices: 7186412--7186570 Score: 164
Period size: 68 Copynumber: 2.3 Consensus size: 67
7186402 ATAGTTAAGG
* * * *
7186412 ATAATAATATATATATAAT-AATAATATAAAATAATAATATATATAAAATATATAATAAATAATA
1 ATAATAATATATA-A-AATAAATAACATAAAATAATAATATATATAAAACATATAATAAAGAAAA
**
7186476 TGTA
64 TAAA
* *
7186480 ATAATAATATATAAAATAAATAACATATAATAA-AATA-ATCATATAACATATAATATAAGAAAA
1 ATAATAATATATAAAATAAATAACATAAAATAATAATATAT-ATAAAACATATAATA-AAGAAAA
7186543 TAAA
64 TAAA
7186547 ATAAATAAT-TATAAAAATAAATAA
1 AT-AATAATATAT-AAAATAAATAA
7186571 AACATAGGGC
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
65 2 0.03
66 20 0.26
67 26 0.33
68 30 0.38
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (67 bp):
ATAATAATATATAAAATAAATAACATAAAATAATAATATATATAAAACATATAATAAAGAAAATA
AA
Found at i:7187256 original size:13 final size:13
Alignment explanation
Indices: 7187238--7187262 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7187228 GATTGCTTGC
7187238 AATAAAATAAAAA
1 AATAAAATAAAAA
7187251 AATAAAATAAAA
1 AATAAAATAAAA
7187263 GTAGAAAGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAAAATAAAAA
Found at i:7187993 original size:17 final size:17
Alignment explanation
Indices: 7187971--7188004 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7187961 TTGTAAATCG
7187971 AGTTTAAGTGTGGGTTT
1 AGTTTAAGTGTGGGTTT
*
7187988 AGTTTAAGTTTGGGTTT
1 AGTTTAAGTGTGGGTTT
7188005 GAAAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (17 bp):
AGTTTAAGTGTGGGTTT
Found at i:7189646 original size:31 final size:30
Alignment explanation
Indices: 7189568--7189647 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 30
7189558 TGTGCAATGG
*
7189568 TATACATG-AACTTTAATTTGGTGCAATTA
1 TATACATGAAACTTTAATTTGGTGCAAATA
* * * * *
7189597 TACACATAAAAGTCTAATTGTGGTTCAAATA
1 TATACATGAAACTTTAATT-TGGTGCAAATA
*
7189628 TATACTTGAAACTTTAATTT
1 TATACATGAAACTTTAATTT
7189648 TTATTTAATC
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
29 6 0.16
30 9 0.24
31 23 0.61
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (30 bp):
TATACATGAAACTTTAATTTGGTGCAAATA
Found at i:7189940 original size:23 final size:23
Alignment explanation
Indices: 7189914--7189959 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
7189904 TTCATTTGAC
*
7189914 TTAATCAAACATGTTCACGAATA
1 TTAAACAAACATGTTCACGAATA
*
7189937 TTAAACGAACATGTTCACGAATA
1 TTAAACAAACATGTTCACGAATA
7189960 ATGTTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.28
Consensus pattern (23 bp):
TTAAACAAACATGTTCACGAATA
Found at i:7190098 original size:12 final size:12
Alignment explanation
Indices: 7190069--7190101 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
7190059 ATCATTAATA
7190069 AATAAACGAGTC
1 AATAAACGAGTC
7190081 -ATAAACGAGTC
1 AATAAACGAGTC
7190092 AATAAACGAG
1 AATAAACGAG
7190102 CTTGTTCGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.52, C:0.15, G:0.18, T:0.15
Consensus pattern (12 bp):
AATAAACGAGTC
Found at i:7190532 original size:55 final size:57
Alignment explanation
Indices: 7190404--7190542 Score: 255
Period size: 55 Copynumber: 2.5 Consensus size: 57
7190394 AAAAAAAAAC
*
7190404 AAGTATGAAGCCTTGTAAAGTAGAAATCAGGAATAAGGGTTTTATATTCCTAAAAGA
1 AAGTATGAAGCCTTGTAAAGTAGAAATCAAGAATAAGGGTTTTATATTCCTAAAAGA
7190461 AAGTATGAAGCCTTGTAAAGTAGAAATCAAGAATAAGGG-TTT-TATTCCTAAAAGA
1 AAGTATGAAGCCTTGTAAAGTAGAAATCAAGAATAAGGGTTTTATATTCCTAAAAGA
7190516 AAGTATGAAGCCTTGTAAAGTAGAAAT
1 AAGTATGAAGCCTTGTAAAGTAGAAAT
7190543 GAGGATAATG
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
55 40 0.49
56 3 0.04
57 38 0.47
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.27
Consensus pattern (57 bp):
AAGTATGAAGCCTTGTAAAGTAGAAATCAAGAATAAGGGTTTTATATTCCTAAAAGA
Found at i:7190700 original size:40 final size:40
Alignment explanation
Indices: 7190653--7190735 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
7190643 GGCAAATAGT
* *
7190653 AAAACCAGCGTTGCCAAAAGGTCATT-ATCAAAATATTGCC
1 AAAACCAGCATTGCCAAAAGGTCATTGA-CAAAACATTGCC
* * *
7190693 AAAACCAGCATTGCTAGAGGGTCATTGACAAAACATTGCC
1 AAAACCAGCATTGCCAAAAGGTCATTGACAAAACATTGCC
7190733 AAA
1 AAA
7190736 GTGCCATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (40 bp):
AAAACCAGCATTGCCAAAAGGTCATTGACAAAACATTGCC
Found at i:7207934 original size:18 final size:18
Alignment explanation
Indices: 7207895--7207928 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
7207885 TTAAATTTAA
7207895 ATTTGGAATTGTTATTTT
1 ATTTGGAATTGTTATTTT
7207913 ATTT-GAATT-TTATTTT
1 ATTTGGAATTGTTATTTT
7207929 TGATTTCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 5 0.31
18 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65
Consensus pattern (18 bp):
ATTTGGAATTGTTATTTT
Found at i:7210212 original size:42 final size:42
Alignment explanation
Indices: 7210162--7210243 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
7210152 AAGATATGCC
7210162 CATTGTGTCTCAAGACCTCAAGCTCCAATGGTCATATTTGCT
1 CATTGTGTCTCAAGACCTCAAGCTCCAATGGTCATATTTGCT
*
7210204 CATTGTGTCTCGAGACCTCAAGCTCCAATGGTCATATTTG
1 CATTGTGTCTCAAGACCTCAAGCTCCAATGGTCATATTTG
7210244 TTCTTCCTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (42 bp):
CATTGTGTCTCAAGACCTCAAGCTCCAATGGTCATATTTGCT
Done.