Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 280 of 438
Found at i:87599155 original size:78 final size:80
Alignment explanation
Indices: 87599064--87599217 Score: 206
Period size: 78 Copynumber: 1.9 Consensus size: 80
87599054 AGCCCGGTTA
* * * *
87599064 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACCATGCCTTCG
1 TAGTAACTCGCACAAATACCTTC-GGATCTTAACCCGGATTTAATAACTTAGCACAAAGCCTTCG
87599127 GG-CTTAGCCCGAAAT
65 GGACTTAGCCCGAAAT
** * *
87599142 TAGTAACTCGCACAAATACCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATACCTTCGGATCTTAACCCGGATTTAATAACTTAGCACAAAGCCTTCGG
87599207 GACTTAGCCCG
66 GACTTAGCCCG
87599218 GACATCATTC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
77 3 0.05
78 38 0.58
79 15 0.23
80 9 0.14
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATACCTTCGGATCTTAACCCGGATTTAATAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGAAAT
Found at i:87603259 original size:40 final size:40
Alignment explanation
Indices: 87603210--87603302 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
87603200 CTCAATATTA
* *
87603210 CACACTTAGTGCCACATATAGCCGAAGCTATTCCAATTCG
1 CACACTTAGTGCCACATATAGCCAAAGCTATTCCAAATCG
* ** *
87603250 CACACTTAGTGCTATTTATAGCCAAAGCTATTTCAAATCG
1 CACACTTAGTGCCACATATAGCCAAAGCTATTCCAAATCG
*
87603290 CACACTTATTGCC
1 CACACTTAGTGCC
87603303 GCACATAGTC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (40 bp):
CACACTTAGTGCCACATATAGCCAAAGCTATTCCAAATCG
Found at i:87605298 original size:32 final size:32
Alignment explanation
Indices: 87605261--87605327 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
87605251 TTATGTGTTG
87605261 AATAAAAAAGAGTCTGAATTGAAAATTGAATT
1 AATAAAAAAGAGTCTGAATTGAAAATTGAATT
87605293 AATAAAAAAGAGTCTGAATTGAAAATTGAATT
1 AATAAAAAAGAGTCTGAATTGAAAATTGAATT
87605325 AAT
1 AAT
87605328 GCCTGTTGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.54, C:0.03, G:0.15, T:0.28
Consensus pattern (32 bp):
AATAAAAAAGAGTCTGAATTGAAAATTGAATT
Found at i:87620397 original size:40 final size:40
Alignment explanation
Indices: 87620312--87620462 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
87620302 AATTGAATGA
* * *
87620312 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
87620352 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
87620393 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
87620432 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
87620463 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:87620476 original size:40 final size:40
Alignment explanation
Indices: 87620348--87620478 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
87620338 TATGCTGGAA
* * *
87620348 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
87620388 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
87620428 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
87620468 ATTATATCCGG
1 ATTATATCCGG
87620479 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:87628400 original size:40 final size:40
Alignment explanation
Indices: 87628315--87628465 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
87628305 AATTGAATGA
* * *
87628315 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
87628355 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
87628396 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
87628435 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
87628466 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:87628479 original size:40 final size:40
Alignment explanation
Indices: 87628351--87628481 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
87628341 TATGCTGGAA
* * *
87628351 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
87628391 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
87628431 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
87628471 ATTATATCCGG
1 ATTATATCCGG
87628482 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:87636089 original size:28 final size:28
Alignment explanation
Indices: 87636043--87636111 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
87636033 TTTAAAACCC
*
87636043 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
87636070 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
87636098 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
87636112 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:87637759 original size:20 final size:20
Alignment explanation
Indices: 87637736--87637773 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87637726 CACATCCAAA
*
87637736 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
87637756 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
87637774 ACGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:87642395 original size:48 final size:48
Alignment explanation
Indices: 87642335--87642477 Score: 277
Period size: 48 Copynumber: 3.0 Consensus size: 48
87642325 TATATGTGTT
*
87642335 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
87642383 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
87642431 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
87642478 ATGTGAAATA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 94 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
Found at i:87642473 original size:11 final size:11
Alignment explanation
Indices: 87642457--87642503 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
87642447 CTAATGTGAA
87642457 ATATGTATGAG
1 ATATGTATGAG
87642468 ATATGTAT---
1 ATATGTATGAG
*
87642476 ATATG--TGAA
1 ATATGTATGAG
87642485 ATATGTATGAG
1 ATATGTATGAG
87642496 ATATGTAT
1 ATATGTAT
87642504 ATGTGGTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
6 1 0.03
8 5 0.17
9 5 0.17
11 19 0.63
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (11 bp):
ATATGTATGAG
Found at i:87642483 original size:28 final size:28
Alignment explanation
Indices: 87642450--87642505 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
87642440 CGAATGGCTA
87642450 ATGTGAAATATGTATGAGATATGTATAT
1 ATGTGAAATATGTATGAGATATGTATAT
87642478 ATGTGAAATATGTATGAGATATGTATAT
1 ATGTGAAATATGTATGAGATATGTATAT
87642506 GTGGTAAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (28 bp):
ATGTGAAATATGTATGAGATATGTATAT
Found at i:87642500 original size:76 final size:76
Alignment explanation
Indices: 87642402--87642553 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
87642392 CGAATGGCTA
87642402 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
87642467 GATATGTATAT
66 GATATGTATAT
87642478 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
87642543 GATATGTATAT
66 GATATGTATAT
87642554 GTGGTAAAGC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.34
Consensus pattern (76 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
GATATGTATAT
Found at i:87642505 original size:17 final size:17
Alignment explanation
Indices: 87642457--87642507 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
87642447 CTAATGTGAA
87642457 ATATGTATGAGATATGT
1 ATATGTATGAGATATGT
*
87642474 ATA--TATGTGA-A---
1 ATATGTATGAGATATGT
87642485 ATATGTATGAGATATGT
1 ATATGTATGAGATATGT
87642502 ATATGT
1 ATATGT
87642508 GGTAAAGCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
11 3 0.12
13 6 0.23
14 2 0.08
15 6 0.23
17 9 0.35
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (17 bp):
ATATGTATGAGATATGT
Found at i:87642533 original size:48 final size:48
Alignment explanation
Indices: 87642478--87642689 Score: 370
Period size: 48 Copynumber: 4.4 Consensus size: 48
87642468 ATATGTATAT
87642478 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
87642526 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATCGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
87642574 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
87642622 GTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGTCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
87642670 GTGTGAAATATGTAGGAGAT
1 ATGTGAAATATGTATGAGAT
87642690 GTGTGTATAT
Statistics
Matches: 157, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 157 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
Found at i:87642575 original size:124 final size:124
Alignment explanation
Indices: 87642355--87642601 Score: 476
Period size: 124 Copynumber: 2.0 Consensus size: 124
87642345 GAATGGCTAG
87642355 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
87642420 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATA
66 ATATGTATATGTGGTAAAGCCGAATCGCTAATGTGAAATATATATGAGATATGTATATA
87642479 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
87642544 ATATGTATATGTGGTAAAGCCGAATCGCTAATGTGAAATATATATGAGATATGTATAT
66 ATATGTATATGTGGTAAAGCCGAATCGCTAATGTGAAATATATATGAGATATGTATAT
87642602 GTGGTAAAGC
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 121 1.00
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.33
Consensus pattern (124 bp):
TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
ATATGTATATGTGGTAAAGCCGAATCGCTAATGTGAAATATATATGAGATATGTATATA
Found at i:87642621 original size:172 final size:172
Alignment explanation
Indices: 87642335--87642649 Score: 594
Period size: 172 Copynumber: 1.8 Consensus size: 172
87642325 TATATGTGTT
* *
87642335 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATCGC
*
87642400 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
66 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
87642465 GAGATATGTATATATGTGAAATATGTATGAGATATGTATATG
131 GAGATATGTATATATGTGAAATATGTATGAGATATGTATATG
87642507 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATCGC
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATCGC
*
87642572 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAT
66 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
87642637 GAGATATGTATAT
131 GAGATATGTATAT
87642650 GTGGTAAAGC
Statistics
Matches: 139, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
172 139 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (172 bp):
TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATCGC
TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
GAGATATGTATATATGTGAAATATGTATGAGATATGTATATG
Found at i:87642880 original size:37 final size:37
Alignment explanation
Indices: 87642830--87642969 Score: 262
Period size: 37 Copynumber: 3.8 Consensus size: 37
87642820 GGAAAAATAT
87642830 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
87642867 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
87642904 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
87642941 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
87642970 GGACTATTCG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:87645265 original size:48 final size:48
Alignment explanation
Indices: 87645203--87645579 Score: 673
Period size: 48 Copynumber: 7.9 Consensus size: 48
87645193 TATATATGTG
* *
87645203 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
87645251 TGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
87645299 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
87645347 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
87645395 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
87645443 TGTGGTAAAGCCGAATCGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
87645491 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
87645539 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
87645580 GTGTGTATAT
Statistics
Matches: 319, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 319 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:87645770 original size:37 final size:37
Alignment explanation
Indices: 87645720--87645859 Score: 262
Period size: 37 Copynumber: 3.8 Consensus size: 37
87645710 GGAAAAATAT
87645720 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
87645757 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
87645794 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
87645831 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
87645860 GGACTATTCG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:87646927 original size:43 final size:42
Alignment explanation
Indices: 87646879--87647011 Score: 128
Period size: 43 Copynumber: 3.1 Consensus size: 42
87646869 TTTGGTACGT
*
87646879 TGGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACA-
1 TGGCATCGATATGTGATT-CGTGTAAGACCATGTCTGGGACAG
* * * *
87646921 TCGGCATCG-TATTTGATTCGTGTATGACCCTGTTTGGGACAG
1 T-GGCATCGATATGTGATTCGTGTAAGACCATGTCTGGGACAG
* * * *
87646963 TGGCATTGATATGTAATTGCATGTAAGACCACGTCTGGGAC-G
1 TGGCATCGATATGTGATT-CGTGTAAGACCATGTCTGGGACAG
87647005 TTGGCAT
1 -TGGCAT
87647012 TGTATGATAT
Statistics
Matches: 73, Mismatches: 13, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
41 25 0.34
42 18 0.25
43 30 0.41
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (42 bp):
TGGCATCGATATGTGATTCGTGTAAGACCATGTCTGGGACAG
Found at i:87646961 original size:41 final size:43
Alignment explanation
Indices: 87646880--87647003 Score: 119
Period size: 41 Copynumber: 2.9 Consensus size: 43
87646870 TTGGTACGTT
87646880 GGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACATC
1 GGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACATC
* * * * *
87646923 GGCATCG-TATTTGATT-CGTGTATGACCCTGTTTGGGACAGT-
1 GGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACA-TC
* * * * * *
87646964 GGCATTGATATGTAATTGCATGTAAGACCACGTCTGGGAC
1 GGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGAC
87647004 GTTGGCATTG
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
41 25 0.38
42 16 0.25
43 24 0.37
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
GGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACATC
Found at i:87653712 original size:48 final size:48
Alignment explanation
Indices: 87653655--87654018 Score: 283
Period size: 48 Copynumber: 7.6 Consensus size: 48
87653645 TGTGCACTAA
* *
87653655 TGTAAGACCATGTCTTGGACATGGCGTCGGATACGATATGAGAGCCAA
1 TGTAAGACCATGTCTTGGACATGGCATCGGATACGATATGAGAGCCAG
* * * * * *
87653703 TGTAAGACCATGT-TTGGAACATGGCATCGAAAATGTTGTGAGAGCTAG
1 TGTAAGACCATGTCTTGG-ACATGGCATCGGATACGATATGAGAGCCAG
* * ** *
87653751 TGTAAGACCATGTCTCGGACATGGCGTCGGCCACGATATGAGAGCAAG
1 TGTAAGACCATGTCTTGGACATGGCATCGGATACGATATGAGAGCCAG
* * * * * * *
87653799 TGTAAGACCATGT-TTGGAACATGGCATCGAAAATGTTGTGAGAACTAG
1 TGTAAGACCATGTCTTGG-ACATGGCATCGGATACGATATGAGAGCCAG
* * * * * * * ***
87653847 TGTAAGACCATGTATGGGATATGGCATTGGCAT-TGATATGTGCGATTG
1 TGTAAGACCATGTCTTGGACATGGCATCGG-ATACGATATGAGAGCCAG
*
87653895 TGTAAGACCATGTCTGGGACATGGCATCGG-TCAC-ATTATGAGAGCCAG
1 TGTAAGACCATGTCTTGGACATGGCATCGGAT-ACGA-TATGAGAGCCAG
** * * * *
87653943 TGTAAGGTCATGTCTTGGACATGGCATTGGCCT-CGACATGTGAGCCAG
1 TGTAAGACCATGTCTTGGACATGGCATCGG-ATACGATATGAGAGCCAG
87653991 TGTAAGACCATGT-TTGGAACATGGCATC
1 TGTAAGACCATGTCTTGG-ACATGGCATC
87654019 AAAAATTCAC
Statistics
Matches: 247, Mismatches: 57, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
46 1 0.00
47 12 0.05
48 225 0.91
49 8 0.03
50 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTTGGACATGGCATCGGATACGATATGAGAGCCAG
Found at i:87653819 original size:96 final size:96
Alignment explanation
Indices: 87653655--87654024 Score: 413
Period size: 96 Copynumber: 3.9 Consensus size: 96
87653645 TGTGCACTAA
* **
87653655 TGTAAGACCATGTCTTGGACATGGCGTCGGATACGATATGAGAGCCAA-TGTAAGACCATGTTTG
1 TGTAAGACCATGTCTTGGACATGGCATCGGCCACGATATGAGAG-CAAGTGTAAGACCATGTTTG
87653719 GAACATGGCATCGAAAATGTTGTGAGAGCTAG
65 GAACATGGCATCGAAAATGTTGTGAGAGCTAG
* *
87653751 TGTAAGACCATGTCTCGGACATGGCGTCGGCCACGATATGAGAGCAAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTTGGACATGGCATCGGCCACGATATGAGAGCAAGTGTAAGACCATGTTTGG
*
87653816 AACATGGCATCGAAAATGTTGTGAGAACTAG
66 AACATGGCATCGAAAATGTTGTGAGAGCTAG
* * * * * * * * *
87653847 TGTAAGACCATGTATGGGATATGGCATTGG-CATTGATATGTGCG-ATTGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTTGGACATGGCATCGGCCA-CGATATGAGAGCA-AGTGTAAGACCATGTTT
* *** ** * *
87653910 GGGACATGGCATCGGTCACATTATGAGAGCCAG
64 GGAACATGGCATCGAAAATGTTGTGAGAGCTAG
** * * * * *
87653943 TGTAAGGTCATGTCTTGGACATGGCATTGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTTGGACATGGCATCGGCCACGATATGAGAGCAAGTGTAAGACCATGTTTGG
*
87654008 AACATGGCATCAAAAAT
66 AACATGGCATCGAAAAT
87654025 TCACCCTCTT
Statistics
Matches: 228, Mismatches: 41, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
95 6 0.03
96 221 0.97
97 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (96 bp):
TGTAAGACCATGTCTTGGACATGGCATCGGCCACGATATGAGAGCAAGTGTAAGACCATGTTTGG
AACATGGCATCGAAAATGTTGTGAGAGCTAG
Found at i:87653993 original size:144 final size:143
Alignment explanation
Indices: 87653655--87654017 Score: 335
Period size: 144 Copynumber: 2.5 Consensus size: 143
87653645 TGTGCACTAA
* * * * * * *
87653655 TGTAAGACCATGTCTTGG-ACATGGCGTCGGATACGATATGAGAGCCAATGTAAGACCATGTTTG
1 TGTAAGACCATGT-TTGGAACATGGCATCGAAAATGATGTGAGA-CCAGTGTAAGACCATGTATG
* ** * * * *
87653719 GAACATGGCATCGAAAATG-T-TGTGAGAGCTAGTGTAAGACCATGTCTCGGACATGGCGTCGGC
64 GAACATGGCATTGGCATTGATATGTGCGA--TTGTGTAAGACCATGTCTCGGACATGGCATCGGC
87653782 CACGATATGAGAGCAAG
127 CACGATATGAGAGCAAG
* *
87653799 TGTAAGACCATGTTTGGAACATGGCATCGAAAATGTTGTGAGAACTAGTGTAAGACCATGTATGG
1 TGTAAGACCATGTTTGGAACATGGCATCGAAAATGATGTGAG-ACCAGTGTAAGACCATGTATGG
* * * *
87653864 GATATGGCATTGGCATTGATATGTGCGATTGTGTAAGACCATGTCTGGGACATGGCATCGGTCAC
65 AACATGGCATTGGCATTGATATGTGCGATTGTGTAAGACCATGTCTCGGACATGGCATCGGCCAC
*
87653929 -ATTATGAGAGCCAG
130 GA-TATGAGAGCAAG
** * *** *
87653943 TGTAAGGTCATGTCTTGG-ACATGGCATTG-GCCTCGACATGTGAG-CCAGTGTAAGACCATGTT
1 TGTAAGACCATGT-TTGGAACATGGCATCGAAAAT-G--ATGTGAGACCAGTGTAAGACCATGTA
87654005 TGGAACATGGCAT
62 TGGAACATGGCAT
87654018 CAAAAATTCA
Statistics
Matches: 178, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
143 6 0.03
144 154 0.87
145 6 0.03
146 12 0.07
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (143 bp):
TGTAAGACCATGTTTGGAACATGGCATCGAAAATGATGTGAGACCAGTGTAAGACCATGTATGGA
ACATGGCATTGGCATTGATATGTGCGATTGTGTAAGACCATGTCTCGGACATGGCATCGGCCACG
ATATGAGAGCAAG
Found at i:87661379 original size:48 final size:48
Alignment explanation
Indices: 87661273--87661733 Score: 393
Period size: 48 Copynumber: 9.6 Consensus size: 48
87661263 TATGTGTGCT
* *
87661273 AGTGTAAGACCATGTGTAGGACATGGCATCGGC-ACGATATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGATATGAGAGCC
* * * * * *
87661320 AGTGTAAGACCATATTTAGAACATGGCATCGGTAATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGATATGAGAGCC
* * * *
87661368 AGTGTAAGACCATGTCT-GCGACATGGCATCGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTAG-GACATGGCATCGGCAATGATATGAGAGCC
* * *
87661416 AGTGTAAGACCATGTCTCA-GACATGGCGTCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCT-AGGACATGGCATCGGCAATGATATGAGAGCC
* * * * *
87661464 AGTGTAATACCATGT-TTGGAACATGGCATCGACAAT-ATTGTGAGAACC
1 AGTGTAAGACCATGTCTAGG-ACATGGCATCGGCAATGA-TATGAGAGCC
* * * * *
87661512 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGATATGAGAGCC
*
87661560 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT--TATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CA-ATGATATGAGAGCC
* * * * * * * *
87661608 AGTGTAAGACAATGTCTGGGGCATGGCATCAGCATTGAGA-CAGGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGATATGA-GAGCC
* * * * * *
87661656 AGCGTAAGACCATGTTTGGGACATGGCATCGGC-CTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAAT-GATATGAGAGCC
* *
87661704 AGTTTAAGACCATGT-TTGGAACATGGCATC
1 AGTGTAAGACCATGTCTAGG-ACATGGCATC
87661734 ATCAATTCAC
Statistics
Matches: 332, Mismatches: 65, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
46 1 0.00
47 40 0.12
48 284 0.86
49 6 0.02
50 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGATATGAGAGCC
Found at i:87661663 original size:144 final size:140
Alignment explanation
Indices: 87661260--87661733 Score: 565
Period size: 144 Copynumber: 3.3 Consensus size: 140
87661250 GACATTTGGG
* *
87661260 TGATATGTGTGCTAGTGTAAGACCATGTGTAGGACATGGCATCGG-CACGATATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* * * *
87661324 TAAGACCATATTTAGAACATGGCATCGGTAATGTTGTGAGAGCCAGTGTAAGACCATGTCTGCGA
66 TAAGACCATGTTTGGAACATGGCATC-G-CA--TTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
87661389 CATGGCATCGGCAT
127 CATGGCATCGGCAT
* ** *
87661403 TGATATGTGCGCTAGTGTAAGACCATGTCTCAGACATGGCGTCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* *
87661468 TAATACCATGTTTGGAACATGGCATCGACAATATTGTGAGAACCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTTTGGAACATGGCATCG-C---ATTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
87661533 CATGGCATCGGCAT
127 CATGGCATCGGCAT
87661547 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCCAGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGT
* * ** * * * *
87661611 GTAAGACAATGTCTGGGGCATGGCATCAGCATTGAGACAGGAGCTAGCGTAAGACCATGTTTGGG
65 GTAAGACCATGTTTGGAACATGGCATC-GCATTGTG--A-GAGCCAGTGTAAGACCATGTCTGGG
*
87661676 ACATGGCATCGGCCT
126 ACATGGCATCGGCAT
* * * * * * *
87661691 CGACATGTGAGCCAGTTTAAGACCATGTTTGGAACATGGCATC
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC
87661734 ATCAATTCAC
Statistics
Matches: 288, Mismatches: 34, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
141 5 0.02
143 43 0.15
144 238 0.83
145 1 0.00
146 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (140 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
TAAGACCATGTTTGGAACATGGCATCGCATTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATG
GCATCGGCAT
Found at i:87665255 original size:15 final size:15
Alignment explanation
Indices: 87665235--87665265 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
87665225 AATTATGAAA
87665235 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
87665250 GATATGTTTTGTATT
1 GATATGTTTTGGATT
87665265 G
1 G
87665266 GTGTTTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:87665855 original size:45 final size:43
Alignment explanation
Indices: 87665805--87665901 Score: 101
Period size: 41 Copynumber: 2.3 Consensus size: 43
87665795 GTGTTCTCGT
* *
87665805 GCATCGATATATGTGGATGT-GTGTAAGATCATGTCTAGGACATTA
1 GCATCGATATAT-T-GAT-TCGTGTAAGACCATGTCTAGGACAGTA
* * *
87665850 GCATCG-TAT-TTGATTCGTGTAAGACCCTGTCTGGGACAGTG
1 GCATCGATATATTGATTCGTGTAAGACCATGTCTAGGACAGTA
87665891 GCATCGATATA
1 GCATCGATATA
87665902 AGATAGTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
40 1 0.02
41 29 0.66
42 4 0.09
43 1 0.02
44 3 0.07
45 6 0.14
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (43 bp):
GCATCGATATATTGATTCGTGTAAGACCATGTCTAGGACAGTA
Found at i:87670517 original size:48 final size:48
Alignment explanation
Indices: 87670458--87670964 Score: 770
Period size: 48 Copynumber: 10.8 Consensus size: 48
87670448 ATATATGTGT
*
87670458 GATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* * *
87670506 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* *
87670554 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
87670602 GATATGTATATGTGGTAAAGCCGAATGGCTAA--TG-----TG-A--A
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
87670640 -ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* * * * *
87670687 GATATGTATATGCGGTAAAGTCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
87670735 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
87670783 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG-A
*
87670830 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 -GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* *
87670879 GATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
*
87670927 GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
87670965 TGTTGTAACA
Statistics
Matches: 420, Mismatches: 24, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
37 31 0.07
38 1 0.00
39 2 0.00
40 1 0.00
41 1 0.00
44 2 0.00
45 1 0.00
46 6 0.01
47 2 0.00
48 368 0.88
49 1 0.00
50 4 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
Found at i:87670653 original size:37 final size:37
Alignment explanation
Indices: 87670603--87670684 Score: 164
Period size: 37 Copynumber: 2.2 Consensus size: 37
87670593 TATATATAAG
87670603 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
87670640 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
87670677 ATATGTAT
1 ATATGTAT
87670685 GAGATATGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (37 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:87671048 original size:37 final size:37
Alignment explanation
Indices: 87670998--87671131 Score: 250
Period size: 37 Copynumber: 3.6 Consensus size: 37
87670988 ACATGAAACT
87670998 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
87671035 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
87671072 TGGAGATTATATCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
87671109 TGGAGATTATGTCCAGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
87671132 TTCGTAATAA
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:87676787 original size:40 final size:41
Alignment explanation
Indices: 87676719--87676812 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 41
87676709 AGTGTAAGGT
* * *
87676719 TTGAGATAGCTTCGGCTATATAAAGCACTTAGCGTGCGA-A
1 TTGAAATAGCTTCGGCTATATAAAGCACTAAGCGTGCAATA
* *** *
87676759 TTGGAATAGCTTCGGCTATATGTGGCACTAAGTGTGCAATA
1 TTGAAATAGCTTCGGCTATATAAAGCACTAAGCGTGCAATA
87676800 TTGAAATAGCTTC
1 TTGAAATAGCTTC
87676813 TGTTTAATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 31 0.70
41 13 0.30
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (41 bp):
TTGAAATAGCTTCGGCTATATAAAGCACTAAGCGTGCAATA
Found at i:87706134 original size:30 final size:30
Alignment explanation
Indices: 87706098--87706228 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
87706088 GACAAGATTG
* * * * *
87706098 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
87706128 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
87706156 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
87706186 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
87706215 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
87706229 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:87706189 original size:58 final size:58
Alignment explanation
Indices: 87706098--87706228 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
87706088 GACAAGATTG
* * * * * *
87706098 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
87706156 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
87706215 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
87706229 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:87714140 original size:25 final size:25
Alignment explanation
Indices: 87714116--87714197 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
87714106 ATACATGTAT
* *
87714116 GCTCATACGAGCTATGAATTGGTAT
1 GCTCATACGAGCTATAAATTGGTAA
* *
87714141 GCTC-TCACAAGCTGTAAATTGGTAA
1 GCTCAT-ACGAGCTATAAATTGGTAA
* * *
87714166 GCTCATATGAGCTACAAATAGGTAA
1 GCTCATACGAGCTATAAATTGGTAA
87714191 GCTCATA
1 GCTCATA
87714198 TGAACTATGG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.02
25 44 0.96
26 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (25 bp):
GCTCATACGAGCTATAAATTGGTAA
Found at i:87721527 original size:24 final size:24
Alignment explanation
Indices: 87721495--87721544 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
87721485 AAGAATTTCC
87721495 TTGTATCCATTTAGTTTCCAAGTG
1 TTGTATCCATTTAGTTTCCAAGTG
87721519 TTGTATCCATTTAGTTTCCAAGTG
1 TTGTATCCATTTAGTTTCCAAGTG
87721543 TT
1 TT
87721545 CAAGTATGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (24 bp):
TTGTATCCATTTAGTTTCCAAGTG
Found at i:87726923 original size:37 final size:37
Alignment explanation
Indices: 87726861--87726963 Score: 134
Period size: 37 Copynumber: 2.8 Consensus size: 37
87726851 CGAATAGTCC
* * **
87726861 CCACACATAGTTATCGGGTCTTACCCGTTCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
87726898 CTACACGTGGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87726935 CCACATGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
87726964 ATATATTTCC
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:87727162 original size:48 final size:48
Alignment explanation
Indices: 87727104--87727340 Score: 411
Period size: 48 Copynumber: 4.9 Consensus size: 48
87727094 ATATACACAC
* * *
87727104 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
87727152 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87727200 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87727248 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
87727296 ATCTCATATATATTTCACATTAGCCATTCGGCTTTAACACATATA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
87727341 TACACTTCCA
Statistics
Matches: 181, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 181 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:87727384 original size:47 final size:47
Alignment explanation
Indices: 87727310--87727644 Score: 501
Period size: 47 Copynumber: 7.1 Consensus size: 47
87727300 CATATATATT
* * * * * *
87727310 TCACATTAGCCATTCGGCTTTAACACATATATACACT-TCCACCTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCA
* *
87727357 TCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
87727404 TCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
87727451 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
87727498 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
87727545 TCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
** **
87727592 TCACATTGGCCATTCGGCCTTATCACATATATATACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87727639 TCACAT
1 TCACAT
87727645 AAAATCCTAA
Statistics
Matches: 265, Mismatches: 22, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 264 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:87732833 original size:22 final size:23
Alignment explanation
Indices: 87732808--87732856 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
87732798 ATGTTTTTAC
87732808 TTTTATTCTAT-TTTAAGAC-TATT
1 TTTTATT-TATCTTTAAG-CTTATT
*
87732831 TTTTATTTTTCTTTAAGCTTATT
1 TTTTATTTATCTTTAAGCTTATT
87732854 TTT
1 TTT
87732857 ATTAGGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.20, C:0.08, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTATTTATCTTTAAGCTTATT
Found at i:87735669 original size:14 final size:14
Alignment explanation
Indices: 87735650--87735681 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
87735640 TTGTCTTAAT
87735650 CAAAAGAATTTTCC
1 CAAAAGAATTTTCC
*
87735664 CAAAAGTATTTTCC
1 CAAAAGAATTTTCC
87735678 CAAA
1 CAAA
87735682 TTATCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (14 bp):
CAAAAGAATTTTCC
Found at i:87739025 original size:25 final size:25
Alignment explanation
Indices: 87738993--87739040 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
87738983 TTACAACATG
* *
87738993 AAAATGACCGTTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
87739018 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
87739041 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:87739124 original size:11 final size:11
Alignment explanation
Indices: 87739088--87739143 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
87739078 CATGGTATGT
87739088 ATGATATGCAC
1 ATGATATGCAC
* *
87739099 ATGACATG--T
1 ATGATATGCAC
87739108 ATGATATGCAC
1 ATGATATGCAC
*
87739119 ATGATATG--T
1 ATGATATGCAC
87739128 ATGATATGCAC
1 ATGATATGCAC
87739139 ATGAT
1 ATGAT
87739144 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:87739143 original size:20 final size:20
Alignment explanation
Indices: 87739077--87739143 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
87739067 ATTTTGATAA
*
87739077 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
87739097 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
87739117 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
87739137 ACATGAT
1 ACATGAT
87739144 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:87739219 original size:24 final size:24
Alignment explanation
Indices: 87739193--87739335 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
87739183 GAGGAAGTGC
*
87739193 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
87739217 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
**
87739241 AAAAGACCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
87739265 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
87739288 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
87739312 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87739336 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
23 22 0.20
24 75 0.69
25 11 0.10
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:87739303 original size:47 final size:48
Alignment explanation
Indices: 87739193--87739335 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 48
87739183 GAGGAAGTGC
*
87739193 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
**
87739241 AAAAGACCTTATGCCCCAGTTATTAAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* *
87739288 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
87739336 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
47 39 0.46
48 38 0.45
49 8 0.09
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:87740959 original size:2 final size:2
Alignment explanation
Indices: 87740952--87741003 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
87740942 GCAAATCTTT
87740952 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
87740994 TC TC TT TC TC
1 TC TC TC TC TC
87741004 ATTCTTTTAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:87745695 original size:21 final size:21
Alignment explanation
Indices: 87745648--87745686 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
87745638 AGTATCTTGT
*
87745648 TGTTTAATGATAGATTATGAA
1 TGTTTGATGATAGATTATGAA
87745669 TGTTTGATGATAG-TTATG
1 TGTTTGATGATAGATTATG
87745687 CAAGTTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (21 bp):
TGTTTGATGATAGATTATGAA
Found at i:87751176 original size:40 final size:40
Alignment explanation
Indices: 87751091--87751274 Score: 300
Period size: 40 Copynumber: 4.6 Consensus size: 40
87751081 GCTACTCACT
* *
87751091 CAAATGCCTTCGGGACATAG-CCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
87751130 CCAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
87751170 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
87751210 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
87751250 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
87751275 TTATCATCGA
Statistics
Matches: 137, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 18 0.13
40 117 0.85
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:87756281 original size:40 final size:40
Alignment explanation
Indices: 87756237--87756392 Score: 217
Period size: 40 Copynumber: 3.9 Consensus size: 40
87756227 GGATATAGCT
* * *
87756237 ACTCGCTCAAATGCCTTCGGGACATAGGCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
87756277 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
87756317 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
87756357 ACTCGCACAAATGCCTTCGGAACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
87756393 CATCCGAATA
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:87759481 original size:19 final size:18
Alignment explanation
Indices: 87759453--87759491 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
87759443 AAGTATTGTT
*
87759453 ATCATGGCCCGAAGCCAA
1 ATCATGGCCCAAAGCCAA
*
87759471 ATCAGTGGCCCAAAGCTAA
1 ATCA-TGGCCCAAAGCCAA
87759490 AT
1 AT
87759492 TGGTATAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.15
Consensus pattern (18 bp):
ATCATGGCCCAAAGCCAA
Found at i:87760641 original size:27 final size:27
Alignment explanation
Indices: 87760608--87760702 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 27
87760598 CTTTAGGGGC
87760608 ATTTCGGTAATTTTACAAGTCGAGGGT
1 ATTTCGGTAATTTTACAAGTCGAGGGT
* *
87760635 ATTTCGGTAATTGTACAGGTCGAGGGT
1 ATTTCGGTAATTTTACAAGTCGAGGGT
* * *
87760662 ATTTCGGTAATTTCACAAAT-TAGGGGT
1 ATTTCGGTAATTTTACAAGTCGA-GGGT
*
87760689 ATTTTGGTAATTTT
1 ATTTCGGTAATTTT
87760703 CCTTTATTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.40
Consensus pattern (27 bp):
ATTTCGGTAATTTTACAAGTCGAGGGT
Found at i:87761063 original size:29 final size:28
Alignment explanation
Indices: 87760997--87761087 Score: 121
Period size: 29 Copynumber: 3.2 Consensus size: 28
87760987 AAGTCAACAT
* *
87760997 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
87761025 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
*
87761054 ACATTCATATGGCCCATTTGGCCCGAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
87761083 A-ATTC
1 ACATTC
87761088 CAAGCCATGT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.45
29 31 0.55
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:87763772 original size:37 final size:37
Alignment explanation
Indices: 87763717--87763853 Score: 229
Period size: 37 Copynumber: 3.7 Consensus size: 37
87763707 CGAATAGTCC
* * * *
87763717 CCACTCGTAGTTATCGGGTCTTACCTGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
87763754 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
87763791 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCA
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
87763828 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
87763854 AGAATATATT
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:87764055 original size:48 final size:48
Alignment explanation
Indices: 87763997--87764382 Score: 628
Period size: 48 Copynumber: 8.0 Consensus size: 48
87763987 ATATACACAC
* * * *
87763997 ATCTCCTACATATTTCGCATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87764045 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
87764093 ATCTCATATATATTTCACATTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87764141 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * ** * *
87764189 ATCTCATATATATTTCACATTAGCCATAAGGATTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87764237 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
87764285 ATCTCATACATATTTCACACTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87764333 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87764381 AT
1 AT
87764383 ATTTGTCTTG
Statistics
Matches: 310, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 310 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:87771475 original size:55 final size:55
Alignment explanation
Indices: 87771391--87771501 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
87771381 TCATGGCCTG
*
87771391 AAGCCAAATCCATGTATCCTCTAATGACATGTCACTAGTATCCTAAACTATTCCT
1 AAGCCAAATCCATGTATCCCCTAATGACATGTCACTAGTATCCTAAACTATTCCT
* *
87771446 AAGCCAGATCCATGTATCCCCTAATGACATGTCACTAGTATCTTAAACTATTCCT
1 AAGCCAAATCCATGTATCCCCTAATGACATGTCACTAGTATCCTAAACTATTCCT
87771501 A
1 A
87771502 GGGTTCAACT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (55 bp):
AAGCCAAATCCATGTATCCCCTAATGACATGTCACTAGTATCCTAAACTATTCCT
Found at i:87790200 original size:42 final size:44
Alignment explanation
Indices: 87790032--87790201 Score: 129
Period size: 42 Copynumber: 4.0 Consensus size: 44
87790022 ATAGGATTTT
* **
87790032 GATATGTGA--TATCGTGTAAGACCATGTCTGGGATGTTGGCATC
1 GATATGTGAGTTA-CGTGTAAGACCACGTCTGGGACATTGGCATC
* * * * * *
87790075 GATTTGTGATTTACTTGTAAGACCATGTCTGGGACATCGACATC
1 GATATGTGAGTTACGTGTAAGACCACGTCTGGGACATTGGCATC
* * * * * *
87790119 G-TATATGAGTT-TGTGTAAGACC-CTATCTAGGATAGTGGCAT-
1 GATATGTGAGTTACGTGTAAGACCAC-GTCTGGGACATTGGCATC
*
87790160 GATATGTGA-TTACATGTAAGACCACGTCTGGGACATTGGCAT
1 GATATGTGAGTTACGTGTAAGACCACGTCTGGGACATTGGCAT
87790202 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 25, Indels: 13
0.72 0.19 0.10
Matches are distributed among these distances:
41 3 0.03
42 48 0.50
43 16 0.17
44 27 0.28
45 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (44 bp):
GATATGTGAGTTACGTGTAAGACCACGTCTGGGACATTGGCATC
Found at i:87797894 original size:43 final size:44
Alignment explanation
Indices: 87797734--87797903 Score: 147
Period size: 43 Copynumber: 4.0 Consensus size: 44
87797724 CATAAGATTC
* *
87797734 CGATATGTGA-TTTCATGTAAGACCACATCTGAGAC-GTTGGCAT
1 CGATATGTGAGTTACATGTAAGACCACATCTGGGACAG-TGGCAT
* * ** ** *
87797777 CGATTTGTGATTTATGTGTAAGACCATGTCTGGGACA-TAGACAT
1 CGATATGTGAGTTACATGTAAGACCACATCTGGGACAGT-GGCAT
* *
87797821 CG-TATATGAGTT-CGTGTAAGACC-CTATCTGGGACAGTGGCAT
1 CGATATGTGAGTTACATGTAAGACCAC-ATCTGGGACAGTGGCAT
* *
87797863 CGATATGTGA-TTACATGTAAGACCACGTCTGGGACATTGGC
1 CGATATGTGAGTTACATGTAAGACCACATCTGGGACAGTGGC
87797904 GTTGTACGAG
Statistics
Matches: 100, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 27 0.27
43 47 0.47
44 26 0.26
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (44 bp):
CGATATGTGAGTTACATGTAAGACCACATCTGGGACAGTGGCAT
Found at i:87800242 original size:40 final size:40
Alignment explanation
Indices: 87800184--87800346 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
87800174 TCATCGGGAT
*
87800184 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
87800223 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * * *
87800263 TTAGCCCGGATATAATC-ACTAGCATAAAGGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * * *
87800303 ATAGCCCAGATATAGCAACTCGCACAAGTGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
87800343 TTAG
1 TTAG
87800347 TCTGGTTATC
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:87803494 original size:26 final size:26
Alignment explanation
Indices: 87803457--87803509 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
87803447 TAGAAATTAG
*
87803457 ATACTCACAAGTCTCGTACAATAAGT
1 ATACTCACAAGTCTCATACAATAAGT
*
87803483 ATACTC-CTAAGTCTCATACGATAAGT
1 ATACTCAC-AAGTCTCATACAATAAGT
87803509 A
1 A
87803510 CCTATACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (26 bp):
ATACTCACAAGTCTCATACAATAAGT
Found at i:87810247 original size:40 final size:40
Alignment explanation
Indices: 87810162--87810312 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
87810152 AATTGAATGA
* * * *
87810162 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
87810202 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
87810243 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
87810282 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
87810313 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:87810296 original size:80 final size:80
Alignment explanation
Indices: 87810163--87810312 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
87810153 ATTGAATGAT
* *
87810163 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
87810228 TGTGCTAGTGGCTAC
66 TGTGCTAGTGGCTAC
* * * *
87810243 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
87810306 TTTGTGC
64 ATTGTGC
87810313 ACATGGTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 4 0.07
80 57 0.93
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:87810326 original size:40 final size:40
Alignment explanation
Indices: 87810161--87810328 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
87810151 AAATTGAATG
* * *
87810161 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAA--ATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCGAATGGTT
* * * * *
87810201 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTT
* * **
87810241 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTT
*
87810281 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTT
87810321 ATATCCGG
1 ATATCCGG
87810329 TTATATCCGA
Statistics
Matches: 99, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
37 2 0.02
38 3 0.03
39 4 0.04
40 90 0.91
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTT
Found at i:87810327 original size:80 final size:80
Alignment explanation
Indices: 87810161--87810328 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
87810151 AAATTGAATG
* *
87810161 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
87810226 ATTGTGCTAGTGGCT
66 ATTGTGCTAATGGCT
* * * * *
87810241 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
87810304 CATTTGTGC-ACATGGTT
64 CAATTGTGCTA-ATGGCT
87810321 ATATCCGG
1 ATATCCGG
87810329 TTATATCCGA
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAATGGCT
Found at i:87817188 original size:40 final size:40
Alignment explanation
Indices: 87817103--87817253 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
87817093 AATTGAATGA
* * *
87817103 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
87817143 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
87817184 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
87817223 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
87817254 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:87817267 original size:40 final size:40
Alignment explanation
Indices: 87817140--87817269 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
87817130 ATGCTGGAAA
* * * *
87817140 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
87817180 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
87817220 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
87817260 TTATATCCGG
1 TTATATCCGG
87817270 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:87821430 original size:40 final size:40
Alignment explanation
Indices: 87821345--87821495 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
87821335 AATTGAATGA
* * * *
87821345 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
87821385 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
87821426 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
87821465 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
87821496 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:87821479 original size:80 final size:80
Alignment explanation
Indices: 87821346--87821495 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
87821336 ATTGAATGAT
* *
87821346 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
87821411 TGTGCTAGTGGCTAC
66 TGTGCTAGTGGCTAC
* * * *
87821426 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
87821489 TTTGTGC
64 ATTGTGC
87821496 ACATGGTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 4 0.07
80 57 0.93
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:87821509 original size:40 final size:40
Alignment explanation
Indices: 87821344--87821511 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
87821334 AAATTGAATG
* * *
87821344 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAA--ATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCGAATGGTT
* * * * *
87821384 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTT
* * **
87821424 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTT
*
87821464 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTT
87821504 ATATCCGG
1 ATATCCGG
87821512 TTATATTCCG
Statistics
Matches: 99, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
37 2 0.02
38 3 0.03
39 4 0.04
40 90 0.91
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTT
Found at i:87821510 original size:80 final size:80
Alignment explanation
Indices: 87821344--87821511 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
87821334 AAATTGAATG
* *
87821344 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
87821409 ATTGTGCTAGTGGCT
66 ATTGTGCTAATGGCT
* * * * *
87821424 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
87821487 CATTTGTGC-ACATGGTT
64 CAATTGTGCTA-ATGGCT
87821504 ATATCCGG
1 ATATCCGG
87821512 TTATATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAATGGCT
Found at i:87823854 original size:43 final size:42
Alignment explanation
Indices: 87823789--87823897 Score: 139
Period size: 43 Copynumber: 2.6 Consensus size: 42
87823779 CGTACAATGG
** *
87823789 CAACGTCCCAGACATGGTCTTACACGCAATCAAATATCGATGT
1 CAACGTCCCAGACATGGTCTTACACAAAATCAAATA-CGATGC
* *
87823832 C-ACTGTCCCAGACAGGGTCTTACACAAAATCAAGTACGATGC
1 CAAC-GTCCCAGACATGGTCTTACACAAAATCAAATACGATGC
*
87823874 CAACGTCCCAGACATGTTCTTACA
1 CAACGTCCCAGACATGGTCTTACA
87823898 TGATCACACA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 26 0.46
43 31 0.54
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (42 bp):
CAACGTCCCAGACATGGTCTTACACAAAATCAAATACGATGC
Found at i:87828061 original size:37 final size:37
Alignment explanation
Indices: 87828011--87828081 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
87828001 CGAAGTCTTA
87828011 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
87828048 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
87828082 TCACCCGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.21
Consensus pattern (37 bp):
CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
Found at i:87828089 original size:37 final size:36
Alignment explanation
Indices: 87828009--87828095 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
87827999 TACGAAGTCT
87828009 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
87828045 GTGCCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
87828082 TCACCCGGAACATA
1 T-ACCCGG-ACATA
87828096 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.87
38 5 0.11
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:87828236 original size:49 final size:49
Alignment explanation
Indices: 87828164--87828476 Score: 540
Period size: 49 Copynumber: 6.4 Consensus size: 49
87828154 TTTACCACAT
*
87828164 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
87828213 ATATATATATATTTTCACATTCATCACATCAGCCATGAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
87828262 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
87828311 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
87828360 ATATATATACACTTTCACATTCATCACATCGGCCATAAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
87828409 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
87828458 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
87828477 AATTTTGATA
Statistics
Matches: 251, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
49 250 1.00
50 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:87831932 original size:40 final size:40
Alignment explanation
Indices: 87831888--87832273 Score: 502
Period size: 40 Copynumber: 9.7 Consensus size: 40
87831878 CCAGCATGAT
* * * ** *
87831888 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *** * * *
87831928 TGCTCTTTGGGGTTTAGCACGGATATTTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
87831968 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * *
87832008 TGCTCTTCGGAACTTATCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * *
87832048 TGCTCTTCGGAATTTATCCCAGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
87832088 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
87832128 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACAAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
87832168 TGCTCTTCGAAACTTAGTCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
** *
87832208 TGCTCTTCGGAACTTATTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
87832248 TGCTCTTCGGAACTTAGTCCGGATAT
1 TGCTCTTCGGAACTTAGCCCGGATAT
87832274 GTGACAGCCC
Statistics
Matches: 313, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 313 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
Found at i:87834006 original size:28 final size:28
Alignment explanation
Indices: 87833937--87834037 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
87833927 GACAAGATTG
* * * *
87833937 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
87833967 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
87833995 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
87834024 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
87834038 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:87840627 original size:18 final size:18
Alignment explanation
Indices: 87840604--87840640 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
87840594 AAGAAACAAC
87840604 CCAAACCATAAAAAAAAA
1 CCAAACCATAAAAAAAAA
*
87840622 CCAAACCATAAACAAAAA
1 CCAAACCATAAAAAAAAA
87840640 C
1 C
87840641 ATATGGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.68, C:0.27, G:0.00, T:0.05
Consensus pattern (18 bp):
CCAAACCATAAAAAAAAA
Found at i:87853760 original size:43 final size:43
Alignment explanation
Indices: 87853711--87853853 Score: 198
Period size: 43 Copynumber: 3.3 Consensus size: 43
87853701 CCAAATATGA
* *
87853711 TCTTACATGTTATCACATATCGATGCCAATGTCCCAGACATGG
1 TCTTACATGTAATCACATATCAATGCCAATGTCCCAGACATGG
* * *
87853754 TCTTACATGAAATCATATAACAATGCCAATGTCCCAGACATGG
1 TCTTACATGTAATCACATATCAATGCCAATGTCCCAGACATGG
* *
87853797 TCTTACACGTAATCACA-ATACAATGACAATGTCCCAGACATGG
1 TCTTACATGTAATCACATAT-CAATGCCAATGTCCCAGACATGG
*
87853840 ACTTACATGTAATC
1 TCTTACATGTAATC
87853854 TCATCTTGGT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 86 0.99
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (43 bp):
TCTTACATGTAATCACATATCAATGCCAATGTCCCAGACATGG
Found at i:87861421 original size:43 final size:42
Alignment explanation
Indices: 87861374--87861472 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 42
87861364 TATCACATAT
* *
87861374 CGATGCCAATGTCCTGTACATGGTCTTACACGAAAT-AATATAA
1 CGATGCCAATGTCCAG-ACATGGTCTTACACGAAATCAAAAT-A
* *
87861417 CGATGCCAATGTCCCAGACATGGTTTTACACGTAATCAAAATA
1 CGATGCCAATGT-CCAGACATGGTCTTACACGAAATCAAAATA
*
87861460 CAATGCCAATGTC
1 CGATGCCAATGTC
87861473 TGAGACTTAG
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
42 1 0.02
43 41 0.84
44 7 0.14
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (42 bp):
CGATGCCAATGTCCAGACATGGTCTTACACGAAATCAAAATA
Found at i:87861489 original size:43 final size:44
Alignment explanation
Indices: 87861376--87861496 Score: 113
Period size: 43 Copynumber: 2.8 Consensus size: 44
87861366 TCACATATCG
* * * * *
87861376 ATGCCAATGT-CCTGTACATGGTCTTACACGAAAT-AATATAACG
1 ATGCCAATGTCCCAG-ACATAGTCTTACACGTAATCAAAATAACA
* *
87861419 ATGCCAATGTCCCAGACATGGTTTTACACGTAATCAAAAT-ACA
1 ATGCCAATGTCCCAGACATAGTCTTACACGTAATCAAAATAACA
** * *
87861462 ATGCCAATGTCTGAGACTTAGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATAGTCTTACACGTAATC
87861497 TCATCTCGGT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 58 0.89
44 7 0.11
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATAGTCTTACACGTAATCAAAATAACA
Found at i:87868830 original size:29 final size:29
Alignment explanation
Indices: 87868769--87868860 Score: 145
Period size: 29 Copynumber: 3.2 Consensus size: 29
87868759 AATGAGATTG
*
87868769 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTACGAGTTTGAATTGTATA
87868797 GCACTAAGTGTACGAGTTTGAATTGTATA
1 GCACTAAGTGTACGAGTTTGAATTGTATA
87868826 GCACTAAGTGTACGAGTTTGAATAT-TA-A
1 GCACTAAGTGTACGAGTTTGAAT-TGTATA
87868854 GCACTAA
1 GCACTAA
87868861 ATGTGCGGAC
Statistics
Matches: 61, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
28 26 0.43
29 34 0.56
30 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTACGAGTTTGAATTGTATA
Found at i:87873990 original size:27 final size:28
Alignment explanation
Indices: 87873960--87874029 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
87873950 ATAATAAGTC
*
87873960 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
87873987 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
87874015 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87874030 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87884450 original size:27 final size:28
Alignment explanation
Indices: 87884393--87884462 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
87884383 AAATTTGTAC
**
87884393 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
87884421 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
87884448 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
87884463 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:87884471 original size:27 final size:27
Alignment explanation
Indices: 87884393--87884474 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
87884383 AAATTTGTAC
* *
87884393 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
87884421 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
87884448 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
87884475 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:87887127 original size:27 final size:28
Alignment explanation
Indices: 87887097--87887166 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
87887087 ATAATAAGTC
*
87887097 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
87887124 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
87887152 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87887167 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87895053 original size:27 final size:28
Alignment explanation
Indices: 87895023--87895092 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
87895013 ATAATAAGTC
*
87895023 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
87895050 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
87895078 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87895093 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87900802 original size:29 final size:29
Alignment explanation
Indices: 87900741--87900840 Score: 170
Period size: 28 Copynumber: 3.5 Consensus size: 29
87900731 AATGAGATTG
87900741 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
87900769 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
87900798 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
87900826 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
87900841 CTTACTGTAT
Statistics
Matches: 70, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 35 0.50
29 34 0.49
30 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:87905690 original size:40 final size:39
Alignment explanation
Indices: 87905613--87905726 Score: 147
Period size: 40 Copynumber: 2.9 Consensus size: 39
87905603 TACATCTATG
* *
87905613 GCTAATGTTATATCCGGCTAAATTCCGAAGAGCATTCGT
1 GCTAATGATATATCCGGCTAAGTTCCGAAGAGCATTCGT
87905652 GCTAATGATATATCCGGACTAAGTTCCGAAGAGCATTCGT
1 GCTAATGATATATCCGG-CTAAGTTCCGAAGAGCATTCGT
* * * * *
87905692 GCTAGTGATGTATCTGGGCTAGGTCCCGAAGAGCA
1 GCTAATGATATATC-CGGCTAAGTTCCGAAGAGCA
87905727 ATTATGCTGG
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 16 0.24
40 48 0.73
41 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (39 bp):
GCTAATGATATATCCGGCTAAGTTCCGAAGAGCATTCGT
Found at i:87906570 original size:40 final size:41
Alignment explanation
Indices: 87906470--87906575 Score: 101
Period size: 41 Copynumber: 2.6 Consensus size: 41
87906460 TTCGAATGGT
* * ** * *
87906470 ATCCGGACTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
*
87906511 ATCCGGGCTAAT-TCTCGAAGGCAATTGTGCGAA-TCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-A
*
87906552 A-CCGGGCTATGTCCCGAAGACAAT
1 ATCCGGGCTATGTCCCGAAGGCAAT
87906576 CGAGCAAGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.04
40 23 0.43
41 27 0.51
42 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
Found at i:87909428 original size:49 final size:49
Alignment explanation
Indices: 87909370--87909606 Score: 433
Period size: 49 Copynumber: 4.9 Consensus size: 49
87909360 GTATGAGATG
87909370 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
87909419 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
87909466 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
87909515 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
87909564 TGTATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87909607 TTATATGTGT
Statistics
Matches: 182, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 46 0.25
49 136 0.75
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:87909532 original size:96 final size:96
Alignment explanation
Indices: 87909368--87909606 Score: 442
Period size: 96 Copynumber: 2.5 Consensus size: 96
87909358 ATGTATGAGA
87909368 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
87909433 GGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAG
*
87909464 TGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
87909529 GGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAG
*
87909560 TGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAA
1 TGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87909607 TTATATGTGT
Statistics
Matches: 138, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
96 99 0.72
98 39 0.28
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.31
Consensus pattern (96 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:87909748 original size:37 final size:37
Alignment explanation
Indices: 87909702--87909821 Score: 213
Period size: 37 Copynumber: 3.2 Consensus size: 37
87909692 AATATGTTCT
*
87909702 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
87909739 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
87909776 GGGTAAGACCCGATGACTACGTGTGAAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
87909813 GGGTAAGAC
1 GGGTAAGAC
87909822 TTCGTGATAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:87916404 original size:7 final size:7
Alignment explanation
Indices: 87916392--87916417 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
87916382 CCTAGATGAA
87916392 TTGGGCT
1 TTGGGCT
87916399 TTGGGCT
1 TTGGGCT
87916406 TTGGGCT
1 TTGGGCT
87916413 TTGGG
1 TTGGG
87916418 TCTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:87917963 original size:29 final size:28
Alignment explanation
Indices: 87917904--87918014 Score: 96
Period size: 29 Copynumber: 3.9 Consensus size: 28
87917894 GTGAGCATGA
* * * * *
87917904 ATATGAATGTGACTGGCCCTAACGGACC
1 ATATAAATGTGATTGGGCCTAATGGGCC
87917932 ATATAAATGTGATTAGGGCCTAATGGGCC
1 ATATAAATGTGATT-GGGCCTAATGGGCC
* * * *
87917961 ATATATAGGTGATTTGGGTCTAATGGGAC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
87917990 ATATGAATATGATTGGGCTTAATGG
1 ATATAAATGTGATTGGGCCTAATGG
87918015 CCAGATACAT
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
28 23 0.35
29 41 0.62
30 2 0.03
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:87919597 original size:45 final size:45
Alignment explanation
Indices: 87919440--87919613 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 45
87919430 GGTTGAGCAT
* *
87919440 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*** * * * *
87919486 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAACGC
*
87919531 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
*
87919578 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87919614 GCGGTTACAT
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 38 0.35
46 34 0.31
47 36 0.33
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:87922584 original size:30 final size:31
Alignment explanation
Indices: 87922506--87922584 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 31
87922496 CATAGTATCG
* *
87922506 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCCTGGATCTCTC
* *
87922536 TAT-TCTGGATTTCTTTATTCC-GGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCTGGATCTCTC
87922566 TATCTTGGATTTCTTTATT
1 TATCTTGGATTTCTTTATT
87922585 TGGTTTTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
29 1 0.02
30 37 0.88
31 4 0.10
ACGTcount: A:0.11, C:0.18, G:0.15, T:0.56
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCCTGGATCTCTC
Found at i:87922592 original size:14 final size:15
Alignment explanation
Indices: 87922515--87922594 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
87922505 GTATCTTGGG
*
87922515 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
87922530 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
87922545 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
87922560 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
87922575 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
87922589 TTTCTT
1 TTTCTT
87922595 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 11 0.21
15 41 0.77
16 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:87924890 original size:45 final size:44
Alignment explanation
Indices: 87924733--87924906 Score: 188
Period size: 45 Copynumber: 3.8 Consensus size: 44
87924723 GGTTGAGCAT
*
87924733 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * * *
87924778 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAAAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
87924826 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
87924871 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87924907 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.35
46 31 0.29
47 30 0.28
48 1 0.01
49 2 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:87936694 original size:7 final size:7
Alignment explanation
Indices: 87936682--87936706 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
87936672 CCTGGATGAA
87936682 TTGGGCT
1 TTGGGCT
87936689 TTGGGCT
1 TTGGGCT
87936696 TTGGGCT
1 TTGGGCT
87936703 TTGG
1 TTGG
87936707 TTCTCATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.44, T:0.44
Consensus pattern (7 bp):
TTGGGCT
Found at i:87938259 original size:29 final size:28
Alignment explanation
Indices: 87938200--87938314 Score: 95
Period size: 29 Copynumber: 4.0 Consensus size: 28
87938190 GTGAGCATGA
* * * *
87938200 ATATGAATGTGACTGGGCCTAATCGGTC
1 ATATAAATGTGATTGGGCCTAATGGGCC
87938228 ATATAAATGTGATTAGGGCCTAATGGGCC
1 ATATAAATGTGATT-GGGCCTAATGGGCC
* * * ** *
87938257 ATATATAGGAGATTTGGGTATAATAGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
87938286 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
87938314 A
1 A
87938315 GATACAGATA
Statistics
Matches: 67, Mismatches: 18, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
28 26 0.39
29 39 0.58
30 2 0.03
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:87950556 original size:40 final size:40
Alignment explanation
Indices: 87950527--87950678 Score: 232
Period size: 40 Copynumber: 3.8 Consensus size: 40
87950517 TTATAATAAT
* *
87950527 TCGCGCAAATGCCTTCGAGACTTAACCCGGATTTGGTAAC
1 TCGCACAAATGCCTTCGAGACTTAACCCGGATTTAGTAAC
*
87950567 TCGCACAAATGCCTTCGAGAATTAACCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGAGACTTAACCCGGATTTAGTAAC
* *
87950607 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
1 TCGCACAAATGCCTTCGAGACTTAACCCGGATTTAGTAAC
* * *
87950647 TCGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 TCGCACAAATGCCTTCGAGACTTAACCCGGAT
87950679 ACCATTTGAA
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGAGACTTAACCCGGATTTAGTAAC
Found at i:87959363 original size:29 final size:28
Alignment explanation
Indices: 87959329--87959431 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
87959319 TACTCAATCA
*
87959329 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
87959358 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
87959387 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
87959416 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
87959432 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:87971063 original size:29 final size:29
Alignment explanation
Indices: 87971002--87971074 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
87970992 TACTCAATCA
* *
87971002 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATATGATCCAAACC
* *
87971031 CGCACACATAGTGCCATAT-AGTCCAAACT
1 CGCACACTTAGTGCCATATGA-TCCAAACC
*
87971060 CGCACCCTTAGTGCC
1 CGCACACTTAGTGCC
87971075 GTAAATTACA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.27, C:0.34, G:0.16, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATGATCCAAACC
Found at i:87973457 original size:40 final size:40
Alignment explanation
Indices: 87973400--87973539 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
87973390 GCTCGATTGT
* * * * *
87973400 CTTCGGGACATAGCCCGG-TTATAATAATTCGCGCAAATGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
*
87973440 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
87973480 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
87973520 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
87973540 ACCATTTGAA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 86 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:87975804 original size:30 final size:30
Alignment explanation
Indices: 87975770--87975830 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
87975760 TCCTTAACTC
87975770 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
87975800 AAACTTTTGCATATTTATACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
87975830 A
1 A
87975831 GGCTCGGGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:87986634 original size:14 final size:14
Alignment explanation
Indices: 87986615--87986641 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
87986605 TATCAAGACA
87986615 ATAATTAAGAATAC
1 ATAATTAAGAATAC
87986629 ATAATTAAGAATA
1 ATAATTAAGAATA
87986642 AGCCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (14 bp):
ATAATTAAGAATAC
Found at i:87988783 original size:40 final size:40
Alignment explanation
Indices: 87988728--87988935 Score: 260
Period size: 40 Copynumber: 5.2 Consensus size: 40
87988718 TGAATGATAC
* *
87988728 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* *
87988768 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
*
87988808 CCGGGTTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATAT
* * * *
87988848 CCTGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
87988888 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
87988928 CC-GGCTAA
1 CCGGGCTAA
87988936 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 5 0.03
40 137 0.95
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:87988861 original size:80 final size:79
Alignment explanation
Indices: 87988724--87988935 Score: 293
Period size: 80 Copynumber: 2.7 Consensus size: 79
87988714 CATTTGAATG
* * *
87988724 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCC-GGCTAAGACCCGAAGGC
*
87988788 ATTTGTACGAGTTGTT
64 ATTTGTACGAGTTGCT
*
87988804 ATATCCGGGTTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATATCCTGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATATCC-GGCTAAGACCCGAAGGC
*
87988868 ATTTGTGCGAGTTGCT
64 ATTTGTACGAGTTGCT
* * *
87988884 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGCTAA
87988936 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 7 0.06
80 108 0.92
81 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (79 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGCTAAGACCCGAAGGCAT
TTGTACGAGTTGCT
Found at i:87990935 original size:27 final size:27
Alignment explanation
Indices: 87990887--87990938 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
87990877 GCGAGGCTGC
*
87990887 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* *
87990914 CAGATATTGTGGCTAAGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
87990939 ATATATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:87990946 original size:2 final size:2
Alignment explanation
Indices: 87990939--87990980 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
87990929 AGCCACCAGA
87990939 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87990981 GTGGCGAAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87998148 original size:25 final size:24
Alignment explanation
Indices: 87998081--87998148 Score: 57
Period size: 25 Copynumber: 2.7 Consensus size: 24
87998071 TTCTCCTAAA
* *
87998081 TTTTAATTTTATTTAATTATTTAAT
1 TTTTAA-TTAATTAAATTATTTAAT
* *
87998106 TTTTCAATTTATTGAATTATTATAA-
1 TTTT-AATTAATTAAATTATT-TAAT
87998131 TTTTATATTAATTAAATT
1 TTTTA-ATTAATTAAATT
87998149 TTTGAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
24 1 0.03
25 31 0.84
26 5 0.14
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (24 bp):
TTTTAATTAATTAAATTATTTAAT
Found at i:87999884 original size:37 final size:37
Alignment explanation
Indices: 87999843--87999918 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
87999833 AAATTATTAT
87999843 GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
1 GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
87999880 GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
1 GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
87999917 GT
1 GT
87999919 ATGCAAATCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.41
Consensus pattern (37 bp):
GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
Found at i:88000992 original size:18 final size:18
Alignment explanation
Indices: 88000969--88001008 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
88000959 AGAATTCGGT
88000969 TTAATTCTTATAAAAAAA
1 TTAATTCTTATAAAAAAA
* *
88000987 TTAATTTTTATAAAATAA
1 TTAATTCTTATAAAAAAA
88001005 TTAA
1 TTAA
88001009 AGTGCACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAATTCTTATAAAAAAA
Found at i:88002822 original size:40 final size:40
Alignment explanation
Indices: 88002777--88002943 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
88002767 CGGAATATAA
88002777 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
88002817 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
88002857 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
88002897 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
88002936 CCGGATAT
1 CCGGATAT
88002944 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:88002927 original size:80 final size:79
Alignment explanation
Indices: 88002777--88002943 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
88002767 CGGAATATAA
* *
88002777 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
88002842 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
88002857 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
88002919 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
88002936 CCGGATAT
1 CCGGATAT
88002944 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:88003788 original size:17 final size:19
Alignment explanation
Indices: 88003765--88003810 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
88003755 AAGAAGCATG
88003765 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
88003783 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
88003801 AATCATGCTC
1 AATCATGCTC
88003811 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:88010821 original size:40 final size:40
Alignment explanation
Indices: 88010776--88010942 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
88010766 CGGAATATAA
88010776 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
88010816 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
88010856 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
88010896 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
88010935 CCGGATAT
1 CCGGATAT
88010943 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:88010926 original size:80 final size:79
Alignment explanation
Indices: 88010776--88010942 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
88010766 CGGAATATAA
* *
88010776 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
88010841 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
88010856 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
88010918 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
88010935 CCGGATAT
1 CCGGATAT
88010943 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:88011789 original size:17 final size:19
Alignment explanation
Indices: 88011766--88011811 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
88011756 AAGAAGCATG
88011766 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
88011784 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
88011802 AATCATGCTC
1 AATCATGCTC
88011812 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Done.