Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 281 of 438
Found at i:88017755 original size:40 final size:40
Alignment explanation
Indices: 88017710--88017876 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
88017700 CGGAATATAA
88017710 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
88017750 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
88017790 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
88017830 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
88017869 CCGGATAT
1 CCGGATAT
88017877 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:88017860 original size:80 final size:79
Alignment explanation
Indices: 88017710--88017876 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
88017700 CGGAATATAA
* *
88017710 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
88017775 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
88017790 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
88017852 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
88017869 CCGGATAT
1 CCGGATAT
88017877 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:88018722 original size:17 final size:19
Alignment explanation
Indices: 88018699--88018744 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
88018689 AAGAAGCATG
88018699 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
88018717 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
88018735 AATCATGCTC
1 AATCATGCTC
88018745 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:88025751 original size:40 final size:40
Alignment explanation
Indices: 88025706--88025872 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
88025696 CGGAATATAA
88025706 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
88025746 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
88025786 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
88025826 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
88025865 CCGGATAT
1 CCGGATAT
88025873 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:88025856 original size:80 final size:79
Alignment explanation
Indices: 88025706--88025872 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
88025696 CGGAATATAA
* *
88025706 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
88025771 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
88025786 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
88025848 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
88025865 CCGGATAT
1 CCGGATAT
88025873 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:88026720 original size:17 final size:19
Alignment explanation
Indices: 88026697--88026742 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
88026687 AAGAAGCATG
88026697 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
88026715 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
88026733 AATCATGCTC
1 AATCATGCTC
88026743 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:88028153 original size:39 final size:39
Alignment explanation
Indices: 88028128--88028253 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
88028118 GGACTTTAGC
* * * *
88028128 CCGGACATATTTCCAGTACATAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
88028167 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
** *
88028206 CCGGATATAATTCCAGCACATAGCCTGTAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
88028245 CCGGATATA
1 CCGGATATA
88028254 CATCACTGAA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:88030895 original size:14 final size:14
Alignment explanation
Indices: 88030876--88030908 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
88030866 GTGTATATAA
88030876 GCCATTTTCGCATG
1 GCCATTTTCGCATG
88030890 GCCATTTTCGCATG
1 GCCATTTTCGCATG
88030904 GCCAT
1 GCCAT
88030909 CCAAATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.30, G:0.21, T:0.33
Consensus pattern (14 bp):
GCCATTTTCGCATG
Found at i:88031480 original size:40 final size:40
Alignment explanation
Indices: 88031436--88031591 Score: 226
Period size: 40 Copynumber: 3.9 Consensus size: 40
88031426 AGATATAGCT
* *
88031436 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
88031476 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
88031516 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
88031556 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
88031592 CATCCGAATA
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
40 100 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:88031569 original size:80 final size:80
Alignment explanation
Indices: 88031436--88031586 Score: 250
Period size: 80 Copynumber: 1.9 Consensus size: 80
88031426 AGATATAGCT
* * *
88031436 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
88031501 AGCCCGGATTTGGTA
66 AGCCCGGATTTGGTA
*
88031516 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACT
88031580 TAGCCCG
65 TAGCCCG
88031587 ATTATCATCC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
79 1 0.02
80 65 0.98
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATTTGGTA
Found at i:88037364 original size:31 final size:31
Alignment explanation
Indices: 88037323--88037386 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
88037313 CCTTTTCATA
*
88037323 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
88037354 TTTCAAATTTCATATGACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
88037385 TT
1 TT
88037387 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:88037632 original size:24 final size:24
Alignment explanation
Indices: 88037599--88037863 Score: 367
Period size: 24 Copynumber: 11.2 Consensus size: 24
88037589 GGCCTTGCCT
* *
88037599 CTTTTAATAACTAGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
88037623 CTTTTTATAACTGGGCCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
88037647 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
88037670 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
88037694 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
88037718 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
88037742 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
88037765 CTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
88037789 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
88037813 C-TTTAATAACTGGGGCTTAAGCA
1 CTTTTAATAACTGGGGCATAAGCC
*
88037836 C-TTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
88037859 CTTTT
1 CTTTT
88037864 TCACTTCCTT
Statistics
Matches: 217, Mismatches: 21, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
23 81 0.37
24 136 0.63
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:88037697 original size:71 final size:71
Alignment explanation
Indices: 88037601--88037863 Score: 388
Period size: 71 Copynumber: 3.7 Consensus size: 71
88037591 CCTTGCCTCT
* * * * *
88037601 TTTAATAACTAGGGCAAAAGCCCTTTTTATAACT-GGGCCATAAGCCC-TTTAATAACTGGGGCG
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGG-CATAAGCCCTTTTGATAACTGGGGCA
88037664 TAAGCCC
65 TAAGCCC
* *
88037671 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCA
88037736 TAAGCCC
65 TAAGCCC
*
88037743 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCAT
88037808 AAGCCC
66 AAGCCC
* * *
88037814 TTTAATAACTGGGGCTTAAGCAC-TTTAATAACTAGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTT
88037864 TCACTTCCTT
Statistics
Matches: 178, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
70 26 0.15
71 128 0.72
72 24 0.13
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (71 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCAT
AAGCCC
Found at i:88037717 original size:95 final size:95
Alignment explanation
Indices: 88037599--88037863 Score: 424
Period size: 95 Copynumber: 2.8 Consensus size: 95
88037589 GGCCTTGCCT
* * * * *
88037599 CTTTTAATAACTAGGGCAAAAGCCCTTTTTATAACTGGGCCATAAGCCCTTTAATAACTGGGGCG
1 CTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCG
*
88037664 TAAGCCCTTTTGATAACTGGGGCATAAGCC
66 TAAGCCCTTTTGATAACTAGGGCATAAGCC
*
88037694 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCG
1 CTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCG
88037759 TAAGCCCTTTTGATAACTAGGGCATAAGCC
66 TAAGCCCTTTTGATAACTAGGGCATAAGCC
* * * *
88037789 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCTTAAGCACTTTAATAACTAGGGCA
1 CTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCG
88037853 TAAGCCCTTTT
66 TAAGCCCTTTT
88037864 TCACTTCCTT
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 45 0.28
95 114 0.72
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (95 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCG
TAAGCCCTTTTGATAACTAGGGCATAAGCC
Found at i:88037944 original size:11 final size:11
Alignment explanation
Indices: 88037913--88037968 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
88037903 TTATGAATAC
88037913 ATCATGTGCAT
1 ATCATGTGCAT
*
88037924 ATCA--TACAT
1 ATCATGTGCAT
88037933 ATCATGTGCAT
1 ATCATGTGCAT
*
88037944 ATCA--TACAT
1 ATCATGTGCAT
*
88037953 GTCATGTGCAT
1 ATCATGTGCAT
88037964 ATCAT
1 ATCAT
88037969 ACCTACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:88037979 original size:20 final size:20
Alignment explanation
Indices: 88037913--88037970 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
88037903 TTATGAATAC
88037913 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
88037933 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
88037953 GTCATGTGCATATCATAC
1 ATCATGTGCATATCATAC
88037971 CTACCATGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:88045026 original size:31 final size:31
Alignment explanation
Indices: 88044985--88045048 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
88044975 CTTTTTCATA
*
88044985 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
** *
88045016 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
88045047 TT
1 TT
88045049 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCT
Found at i:88045345 original size:24 final size:24
Alignment explanation
Indices: 88045242--88045406 Score: 239
Period size: 23 Copynumber: 7.0 Consensus size: 24
88045232 GCTTTATCAT
*
88045242 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
88045267 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
88045290 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
88045313 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
88045337 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
88045361 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
88045384 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
88045407 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
22 3 0.02
23 58 0.45
24 56 0.43
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:88045376 original size:71 final size:70
Alignment explanation
Indices: 88045242--88045406 Score: 260
Period size: 71 Copynumber: 2.3 Consensus size: 70
88045232 GCTTTATCAT
*
88045242 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
88045306 CCCTTTA
64 CCCTTTA
* * *
88045313 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTT-ATAACTGGGGCATAAGC
88045378 CCTTTA
65 CCTTTA
88045384 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
88045407 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
70 31 0.35
71 57 0.65
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAGCC
CTTTA
Found at i:88045480 original size:20 final size:20
Alignment explanation
Indices: 88045455--88045521 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
88045445 TTATGAATAC
88045455 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
88045475 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
88045495 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
88045515 ACCATGT
1 ATCATGT
88045522 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:88045486 original size:11 final size:11
Alignment explanation
Indices: 88045455--88045510 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
88045445 TTATGAATAC
88045455 ATCATGTGCAT
1 ATCATGTGCAT
*
88045466 ATCA--TACAT
1 ATCATGTGCAT
88045475 ATCATGTGCAT
1 ATCATGTGCAT
*
88045486 ATCA--TACAT
1 ATCATGTGCAT
*
88045495 GTCATGTGCAT
1 ATCATGTGCAT
88045506 ATCAT
1 ATCAT
88045511 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:88045590 original size:25 final size:25
Alignment explanation
Indices: 88045558--88045605 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
88045548 ATACATAAAC
* * *
88045558 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
88045583 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
88045606 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:88048618 original size:39 final size:39
Alignment explanation
Indices: 88048575--88048700 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
88048565 GGACTTTAGC
* * ** ** *
88048575 CCGGACATATTTCCAGCATGTAGCCTGCAAACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
88048614 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
88048653 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
88048692 CCGGATATA
1 CCGGATATA
88048701 CATCACTGAA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:88048630 original size:78 final size:78
Alignment explanation
Indices: 88048537--88048700 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 78
88048527 GAATTTAAAC
* * * * **
88048537 CCGG-TATAATACCAGCCCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCATGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGC
*
88048599 CTGCAAACCTTAAGT
64 CTGCAAACCCTAAGT
* * *
88048614 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
**
88048679 GCGGACCCTAAGT
66 GCAAACCCTAAGT
88048692 CCGGATATA
1 CCGGATATA
88048701 CATCACTGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
77 8 0.11
78 64 0.89
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
GCAAACCCTAAGT
Found at i:88052407 original size:51 final size:49
Alignment explanation
Indices: 88052287--88052530 Score: 240
Period size: 49 Copynumber: 4.9 Consensus size: 49
88052277 TCTATTGTGA
* * ** **
88052287 GGTCACATGTGTAGTACTAAGTGTAGGCTACTACATGTACTGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * *
88052336 AGT-AGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCA-CGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* ** * *
88052386 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGAT-GTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
88052435 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * *
88052485 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
88052531 GCATTGGCTA
Statistics
Matches: 160, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 119 0.74
50 4 0.03
51 35 0.22
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:88052467 original size:100 final size:97
Alignment explanation
Indices: 88052289--88052517 Score: 293
Period size: 100 Copynumber: 2.3 Consensus size: 97
88052279 TATTGTGAGG
* *
88052289 TCACATGTGTAGTACTAAGTGTAGGCTACTACATGTACTGGATAATTAGTAGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAATTAGTAG-ATGTGTAGTACT
* *
88052354 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
65 AAGTGCAGGCTACTACGCGTACCGGATAA-TT-GA
* *
88052389 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-TCAGAT-GTTAGGTCATG-TGTGTAGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACT-AGATAATTA-GT-A-GATGTGTAGT
* *
88052451 ACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
62 ACTAAGTGCAGGCTACTACGCGTACCGGATAATTGA
*
88052487 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
88052518 TGCGTACTAG
Statistics
Matches: 115, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
98 30 0.26
99 6 0.05
100 77 0.67
101 1 0.01
102 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (97 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAATTAGTAGATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:88057041 original size:40 final size:40
Alignment explanation
Indices: 88056996--88057125 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
88056986 CGGAATACAA
88056996 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
88057036 CCGGATAGAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * * *
88057076 CCGAATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
88057116 CCGGATATAA
1 CCGGATATAA
88057126 TTTCCAGCAA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:88064913 original size:12 final size:12
Alignment explanation
Indices: 88064896--88064920 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
88064886 TAGTTAAACA
88064896 TAACACCAATTG
1 TAACACCAATTG
88064908 TAACACCAATTG
1 TAACACCAATTG
88064920 T
1 T
88064921 GTTTGGATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (12 bp):
TAACACCAATTG
Found at i:88066691 original size:37 final size:37
Alignment explanation
Indices: 88066608--88066698 Score: 139
Period size: 37 Copynumber: 2.4 Consensus size: 37
88066598 TTATTACGAA
88066608 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
*
88066645 GT-TGTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCT-TACCCGGACATAATCTCCACACATAGTCATCGG
*
88066682 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
88066699 TTTCCAAGTT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
36 1 0.02
37 42 0.86
38 6 0.12
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
Found at i:88066815 original size:49 final size:49
Alignment explanation
Indices: 88066747--88067655 Score: 1377
Period size: 49 Copynumber: 18.7 Consensus size: 49
88066737 ATTCACATTA
* * * * *
88066747 GCCATTCGGCTTTACCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
88066796 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
88066845 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88066894 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
88066943 ACCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
88066992 GCCATTAGGCCTCATCACATATATATACA--TT----TT---CACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * * *
88067032 GCCATTAGGCCTCATCTCATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88067081 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACGTCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88067130 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACGTCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88067179 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACGTCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
88067228 GCCATTAGGCCTTATCACATATACATACAGTTTCACATTCACCACGTCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
88067277 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
88067326 GCCATTAGGCCTCATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * * *
88067375 GCCATTAGGCCTCATCTCATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88067424 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
88067473 GCCATTAGGCCTCATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * * *
88067522 GCCATTAGGCCTCATCTCATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88067571 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
88067620 GCCATTGGGCCTTATCACATATACATATACTTTCAC
1 GCCATTAGGCCTTATCACATATACATACACTTTCAC
88067656 GAATCTTGAT
Statistics
Matches: 808, Mismatches: 43, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
40 35 0.04
42 2 0.00
43 2 0.00
46 2 0.00
47 2 0.00
49 765 0.95
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:88076030 original size:20 final size:20
Alignment explanation
Indices: 88076005--88076050 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
88075995 GATAATACAA
88076005 GTGTGGCTTGGGAAACGCCC
1 GTGTGGCTTGGGAAACGCCC
*
88076025 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGAAACGCCC
88076045 GTGTGG
1 GTGTGG
88076051 GCCGACCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.11, C:0.24, G:0.43, T:0.22
Consensus pattern (20 bp):
GTGTGGCTTGGGAAACGCCC
Found at i:88077769 original size:50 final size:48
Alignment explanation
Indices: 88077651--88077789 Score: 138
Period size: 50 Copynumber: 2.8 Consensus size: 48
88077641 TCTCATATCG
* * * *
88077651 ATGCCATGTCCCAGATGTGGTCTTACAC--GAAATCATATATGGATGCCA
1 ATGCCATGT-CCAGATATGGTCTTACACGGGACA-CATATATCGATACCA
* *
88077699 ATGTCATATTCCAGATATGGTCTTACACGGGACCACATATATCGATACCA
1 ATGCCAT-GTCCAGATATGGTCTTACACGGGA-CACATATATCGATACCA
* *
88077749 ATGCCATGTCCTAGAAATGGTCTTACATGGGATCACATATA
1 ATGCCATGTCC-AGATATGGTCTTACACGGGA-CACATATA
88077790 ACCCTAATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
48 23 0.31
49 4 0.05
50 47 0.63
51 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCAGATATGGTCTTACACGGGACACATATATCGATACCA
Found at i:88086655 original size:28 final size:28
Alignment explanation
Indices: 88086590--88086690 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
88086580 ATAGTGAATC
*
88086590 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
88086619 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
88086647 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
88086677 CGCACACTTAGTGC
1 CGCACACTTAGTGC
88086691 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:88094426 original size:28 final size:28
Alignment explanation
Indices: 88094361--88094461 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
88094351 ATAGTGAATC
*
88094361 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
88094390 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
88094418 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
88094448 CGCACACTTAGTGC
1 CGCACACTTAGTGC
88094462 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:88103487 original size:48 final size:48
Alignment explanation
Indices: 88103416--88103849 Score: 510
Period size: 48 Copynumber: 9.4 Consensus size: 48
88103406 TCTCATATCG
**
88103416 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
88103464 ATGCCATATCTCAGATATGGTCTTACATGGGTTCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
88103512 ATGCCATGTCCTAGACATGGTC-TAGCATGGGAT--CA-A---ATGCCA
1 ATGCCATGTCCCAGACATGGTCTTA-CATGGGATCACATATCGATGCCA
88103554 ATGCCATGTCCCAGACATGGTCTTACACT-GGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGGATCACATATCGATGCCA
* *
88103602 ATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATTCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * *
88103650 ATGCCATGTCCCAGACATGATCTTACACGGGATCACATATGGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * *
88103698 ATGCCACGTCCCAGACATAGTCTAACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
88103746 ACGCCATGTCCCAGACATGGTCTTACAT--G-TCA-TTA-CGATG---
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* ** *
88103786 --G-CATGTCCCAGACATGGTCTTACACGAAATCATATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
88103831 ATGCCATATCCCAGGACAT
1 ATGCCATGTCCCA-GACAT
88103850 ATCGATGCCA
Statistics
Matches: 330, Mismatches: 34, Indels: 43
0.81 0.08 0.11
Matches are distributed among these distances:
37 23 0.07
38 1 0.00
40 3 0.01
41 2 0.01
42 38 0.12
43 8 0.02
44 4 0.01
45 5 0.02
46 3 0.01
47 4 0.01
48 234 0.71
49 5 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:88103623 original size:138 final size:140
Alignment explanation
Indices: 88103416--88108024 Score: 1434
Period size: 144 Copynumber: 33.5 Consensus size: 140
88103406 TCTCATATCG
* * *
88103416 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGCCATATCTCAGATA
1 ATGCCATGTCCCAGACATGGTCTTACATG-GATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * *
88103481 TGGTCTTACATGGGTTCACATATCGATGCCAATGCCATGTCCTAGACATGGTC-TAGCATGGGAT
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTA-CACGGGAT
88103545 -CA-A-ATGCCA
129 ACATAGATGCCA
88103554 ATGCCATGTCCCAGACATGGTCTTACACTGGATCACATATCGATGCCAATGCCATGTCCCAGATA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
*
88103619 TGGTCTTACATGGGATCACATATCGATTCCAATGCCATGTCCCAGACATGATCTTACACGGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
88103684 ACATATGGATGCCA
129 ACATA--GATGCCA
* * * * *
88103698 ATGCCACGTCCCAGACATAGTCTAACATGGGATCACATATCGATGCCAACGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * **
88103763 TGGTCTTACAT--G-TCA-TTA-CGATG-----G-CATGTCCCAGACATGGTCTTACACGAAATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
*
88103817 ATATATCGATGCCA
129 ACATA--GATGCCA
* * * * * *
88103831 ATGCCATATCCCAGGACAT-ATC---GAT-G--C-CA-ATGCCATTTCCCAA--ACATTGT--CA
1 ATGCCATGTCCCA-GACATGGTCTTACATGGATCACATAT-CGA--TGCCAATGCCA-TGTCCCA
* ** * * * * * * * *
88103883 TACT-TGGGATCAAAT---ATCA-ATGTCAATGCC-ATGTCC-TAGACACGGTTTTACACAGGAT
61 GA-TATGGTCTTACATGGGATCACATATCGATGCCAATG-CCAT-GTC-C-----CAGACATGAT
*
88103941 C--ACA---AAT-C--A-ATGCCA
117 CTTACACGGGATACATAGATGCCA
* * * * *
88103956 ATGCAATGACCCAGATATGGTCTTACATAGAATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * *
88104021 TGATCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACAT-ATTCTTACATGGGAT
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGA-TCTTACACGGGAT
88104085 CACATATCGATGCCA
129 -ACATA--GATGCCA
* * **
88104100 ATGCCATGTCCTAGACATGGTCTTACAT-G-TCA-TTA-CGAT----A--CCATGTCCCAGGCAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGATCACATATCGATGCCAATGCCATGTCCCAGATAT
**** * * * * *
88104155 GGTCTTACACAAAATCATATATCGATGCC-A---CATATCCCA-AGCAT-ATCGATGC-C--AAT
66 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGA-CATGATC-TTACACGGGA-
* * *
88104211 TCCAT--TTCCCA
128 TACATAGATGCCA
* ** * * * ** * * * * * **
88104222 A--ACAT-TTTCATACTTGGGAACACATATCGATGC-CA-ATGCCATGTCCCA-GACATGGTCTT
1 ATGCCATGTCCCAGACAT-GG-TCTTACATGGAT-CACATAT-CGATG-CCAATGCCAT-GTCCC
* * ** * ** * * * * ** ***
88104281 ACAT-GGGATCACAAAT-CAATGC-CA-ATTCCATGTCCCAA-ACAAGGT--CTTACATG-GGAT
60 AGATATGG-TCTTACATGGGAT-CACATA-TCGATG--CCAATGCCATGTCCCAGACATGATCTT
* *
88104338 -CAC---A-A-ATTGATTCCA
120 ACACGGGATACATAGATGCCA
* * * * * * * *
88104353 ATGCCATGTCCCAGGCATGGACCTACACGGAATCACATATTGATGCTAATGCCATGTCGCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGG-ATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * *
88104418 TGGTCTAACATGGGATCACATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
88104483 ACATAACGATGCCA
129 ACAT-A-GATGCCA
* * * * *
88104497 ATACCATGTCCCAGACATAGTCTTATACGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * *
88104562 TGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACAAGGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
88104627 ACATATCGATGCCA
129 ACATA--GATGCCA
** *
88104641 ATGCCATGTCCTGGACATGGTCTTACAT-G-T--CAT-T--ATG---ATGCCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGATCACATATCGATGCCAATGCCATGTCCCAGATAT
* * ** * * * *
88104696 TGTCTTACACGAAATAACATATCAATGCTAATGCCATAT--C--ACA-G-----A-AC---AT--
66 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGATAC
*
88104745 ATCGATGCCA
131 ATAGATGCCA
* * * * * * * * *
88104755 CTACCATTTCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * * * * * *
88104820 TGGTCTTACATGGGATCACAAATCGATTCAAATGCCATCTCCTAGACATGGTCTTTCATGGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
*
88104885 ACATATCGATGCTA
129 ACATA--GATGCCA
* ** * * * *
88104899 ATGCCATATCCTTGACATGGTCTTACAAGGGATAACATATCGATGCCAATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTAC-ATGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * **
88104964 TGGTCTTACAT--G-T--CAT-T--ATG---TTGCCATGTCCCA-AGCATGGTCTTACACGAAAT
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGA-CATGATCTTACACGGGAT
88105017 -CATGTAATGATGCCA
129 ACA--T-A-GATGCCA
* * * * * * *
88105032 ATGTCATATCCTAGAGCAT-ATC--A-AT-G--C-CA-ATGCCATTTCCCAA--ACATTGT--CA
1 ATGCCATGTCCCAGA-CATGGTCTTACATGGATCACATAT-CGA--TGCCAATGCCA-TGTCCCA
* **** ** * * * ** *
88105084 TACT-TGGGAACACATATTGATGC-CA-ATCCCATGTCCCA-GACATGGT--CTTACATGGA--A
61 GA-TATGGTCTTACAT-GGGAT-CACATAT-CGATG-CCAATGCCAT-GTCCCAGACAT-GATCT
*
88105141 T-CAC---A-A-ATCA-ATGGCA
119 TACACGGGATACAT-AGATGCCA
* * * * * * * *
88105157 ATTCCATGCCCCAAACACGGTGTTACATGGGATCACAAATTGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
** * * * * * * **
88105222 TGGTCTTACACCGAATCACATATTGATGCCAATGCCATGTCACAGACATGGTCTAATATAGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
88105287 ACATATCGATGCCA
129 ACATA--GATGCCA
* * * * *
88105301 ATGCCATGTCCCACATATGGTCTTACACAGGATCACATAACGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * * *
88105366 TGGTCTTACACGGGATCACATATCGATGTCAATGCCATGTCCTAGACATGGTCTTACATGGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
88105431 ACATATCGATGCCA
129 ACATA--GATGCCA
* * * *
88105445 ATTCCATGTCCCAGACATGGTCTTACAAAGGATCACATTTCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTAC-ATGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * ** * * * *
88105510 TGGCCTTACACGAAATAACATATCGATGCTAATGCCATAT-TCAGAACAT-A---T---C--GAT
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAG-ACATGATCTTACACGGGAT
* * *
88105565 GC-CA-CTGCCA
129 ACATAGATGCCA
* * * * * * * * * *
88105575 TTTCCCA-G----ACA-AGGTTTTACA-AGGGATCACATATCGATGCCAATGCCATATCTCAGAT
1 -ATGCCATGTCCCAGACATGGTCT-TACATGGATCACATATCGATGCCAATGCCATGTCCCAGAT
* * * * * * *
88105633 ATGATCTTACATGGGATCACAAATCGATTCGAATGCCATGTCCCAGATATGGTCTTACATGGGAT
64 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT
*
88105698 CACAAATCGAT-CCTA
129 -AC--ATAGATGCC-A
* ** * * * * *
88105713 ATGCCATATCCTTGACATGGTCTTACAGGGGATAACATATAGATGCCAATACCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * * * * * *
88105778 TGGTCTTACATGAGATGACATATCGATGCTAATGCCATGTACTAGACATGGTCTAACATGGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
**
88105843 ACATATCGATGATA
129 ACATA--GATGCCA
* * * * *
88105857 ATGCCATGTCTCAGACATGGTCTTATACGGGAACACATATCGATGCCAATGCCATGTCCCAGAAA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * *
88105922 TGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACAT-AGTCTTACATGGGAT
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGA-TCTTACACGGGAT
88105986 CACATATCGATGCCA
129 -ACATA--GATGCCA
* * *
88106001 ATGTCATGTCCCAGACATGGTCTTACATGCGAT----TA-C---G---ATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATG-GATCACATATCGATGCCAATGCCATGTCCCAGATA
* ** * * * * * ***
88106055 TGGTCTTACACGAAATCATATATCGATGCCAATGTCATTTCCCAAACATTG-TCATAGTTGGGAA
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA-TGATCTTACACGGG-A
*
88106119 CACATATCGATGCCA
128 TACATA--GATGCCA
* * * * * * * * *
88106134 ACGCCATGTCCCAAACATGGTCTTACACAGAATCACATATTGATGCAAAAGCCATGTCGCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * *
88106199 TGGTCTAACATGGGATCACATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
88106264 ACATAACAAAGCCAATGCAATGAAGCCA
129 ACAT----------A-G--AT---GCCA
* *
88106292 ATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * ***
88106357 TGGTCTTACAT--G-T--CAT-T--A---CGATGCCATGTCCCAGACATGGTCTTACACAAAATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
*
88106411 ATATATCGATGCCA
129 ACATA--GATGCCA
* * * * * * * * * *
88106425 ATGCCATTTCCCAAACATTGTCATACTTGGGATCATATATCAATGTCAATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
* ** * * * * * ** *
88106490 TGGTTTTACACAGGATCACAAATCAATGCCAATGCAATGTCCCAGATATGGTCTTACATAGAATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
*
88106555 ACATATCAATGCCA
129 ACATA--GATGCCA
* * * * *
88106569 ATGCCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATGCCGTGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * * *
88106634 TAGTCTTACATGGGATCACATATCGATTCCAATGCCATGTCCTAGACATGGTCTTACA--TG-T-
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGATA
* *
88106695 CAT---T-ACG
130 CATAGATGCCA
* * * * * * * **
88106702 ATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCGATACTAATGCCATATCTTA-A-A
1 ATGCCATGTCCCAGACATGGTCTTACATG-GATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * * ** * * *** * ***
88106765 ---AC--ATAT-CGATGC-CACTA-CCATTTTCTA-GACATGGT--TTTACTTG-GGAT-CAC--
65 TGGTCTTACATGGGAT-CACA-TATCGA-TGCCAATGCCAT-GTCCCAGACATGATCTTACACGG
* *
88106815 -AT--ATCGCTGCCA
126 GATACATAGATGCCA
* * * * * *
88106827 ATGCCATGTCTCAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * *** *
88106892 TGGTCTTTCATGGGATCACATATCGATGCTAATGCCATATCATTGACATGATCTTACAGGGGATA
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
88106957 ACATATCGATGCCA
129 ACATA--GATGCCA
* *
88106971 ATGCCATGTCCCAGACATGGTCTTACAT-G-T--CAT-T--A---CGATGCCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGATCACATATCGATGCCAATGCCATGTCCCAGATAT
* * ** ** * * * ** *
88107026 TGTCTTACACGAAATCATGTATCGATG-CAATGCCATTTCCCAAACATTG-TCATACTTGGGAAC
66 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA-TGATCTTACACGGG-AT
88107089 ACATATAGATGCCA
129 AC--ATAGATGCCA
* ** * * *
88107103 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATC-ATTGCCAATTTCATGCCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGA-TGCCAATGCCATGTCCCAGAT
* * * * *
88107167 ACGGTCTTACATGGGATCACAAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACA-GGGAA
64 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGG-A
88107231 TCACATATTGATGCCA
128 T-ACATA--GATGCCA
* * * *
88107247 ATGCCATGTCGCAGACATGGTATAACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
** * *
88107312 TGGTCTTACACAGGATCACATAACGATGCCAAT-CCTATGTCCCAGACATGGTCTTACACGGGAT
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCC-ATGTCCCAGACATGATCTTACACGGGAT
*
88107376 CACATATTGATGCTA
129 -ACATA--GATGCCA
* *
88107391 ATGCCATGTCCCAGACATGGTCTTAGATGGGATCACATATCGATGCCAAAT-CCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCC-AATGCCATGTCCCAGAT
* * * * * **
88107455 ATTGTCTTATAAGGGATCACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACACGAAAT
64 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT
* *
88107520 AACATATCAATGCTA
129 -ACATA--GATGCCA
* * * * * * *****
88107535 ATGCCATATCCCAGAACAT-ATC---GATGCCACTGC-CAT-T---TCCCAA--ACATG-GATTT
1 ATGCCATGTCCCAG-ACATGGTCTTACATG-GA-T-CACATATCGATGCCAATGCCATGTCCCAG
* ** * ** * * * ** ***
88107588 ACATGGGATCACATATCGATTC-CA-ATGCCATGTCTC-A-GACATG-GCCTTACATG-GGAT-C
62 ATATGGTCTTACAT-GGGA-TCACATAT-CGATG-C-CAATGCCATGTCCCAGACATGATCTTAC
* *
88107646 AC---A-A-ATCGATGCGA
122 ACGGGATACATAGATGCCA
* * * * * ** *
88107660 ATGCCATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATGCTAATGTCATATCCTTGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * * * *
88107725 TGGTTTTACAGGGGATAACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTATACGGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
*
88107790 ACATATCGATGCTA
129 ACATA--GATGCCA
* * * *
88107804 ATGCCATGTACTAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGATA
* * * * * * *
88107869 TGGTCTTATATGGGAACACATATCGATGCCATTGCCATGTCCTAGACATGGTCTTATATGGGATC
65 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGAT-
*
88107934 ACATATCAATGCCA
129 ACATA--GATGCCA
* * * * * *
88107948 ATGCCATGTCCGAGACA-GATTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCTAAAC
1 ATGCCATGTCCCAGACATG-GTCTTACAT-GGATCACATATCGATGCCAATGCCATGTCCCAGAT
*
88108012 ATTGTCTTACATG
64 ATGGTCTTACATG
88108025 TCATTACGAT
Statistics
Matches: 3347, Mismatches: 734, Indels: 774
0.69 0.15 0.16
Matches are distributed among these distances:
114 29 0.01
116 3 0.00
117 1 0.00
119 10 0.00
120 6 0.00
121 6 0.00
122 13 0.00
123 4 0.00
124 109 0.03
125 184 0.05
126 29 0.01
127 22 0.01
128 19 0.01
129 26 0.01
130 19 0.01
131 51 0.02
132 130 0.04
133 541 0.16
134 99 0.03
135 33 0.01
136 44 0.01
137 33 0.01
138 141 0.04
139 37 0.01
140 10 0.00
141 23 0.01
142 25 0.01
143 57 0.02
144 1509 0.45
145 17 0.01
147 35 0.01
150 1 0.00
152 1 0.00
153 4 0.00
154 1 0.00
155 3 0.00
156 1 0.00
158 71 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (140 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGATCACATATCGATGCCAATGCCATGTCCCAGATAT
GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGATAC
ATAGATGCCA
Found at i:88103683 original size:96 final size:96
Alignment explanation
Indices: 88103416--88108022 Score: 1359
Period size: 96 Copynumber: 49.8 Consensus size: 96
88103406 TCTCATATCG
** * * *
88103416 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGCCATATCTCAGATA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88103481 TGGTCTTACATGGGTTCACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
*
88103512 ATGCCATGTCCTAGACATGGTC-TAGCATGGGAT--CA-A---ATGCCAATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTA-CATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
*
88103570 ATGGTCTTACACTGGATCACATATCGATGCCA
65 ATGGTCTTACACGGGATCACATATCGATGCCA
* *
88103602 ATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATTCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88103667 TGATCTTACACGGGATCACATATGGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * *
88103698 ATGCCACGTCCCAGACATAGTCTAACATGGGATCACATATCGATGCCAACGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88103763 TGGTCTTACA--TG-TCA-TTA-CGATG---
66 TGGTCTTACACGGGATCACATATCGATGCCA
* ** * *
88103786 --G-CATGTCCCAGACATGGTCTTACACGAAATCATATATCGATGCCAATGCCATATCCCAGGAC
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA-GAC
* * * * *
88103848 AT-ATCGATGC-C--AATGC-CAT-T---TCCCA
65 ATGGTC-TTACACGGGAT-CACATATCGATGCCA
* * * ** * * * * *
88103873 A--ACATTGT--CATACTTGGGATCAAAT---ATCA-ATGTCAATGCC------ATGTCCTAGAC
1 ATGCCA-TGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
* * * * *
88103924 ACGGTTTTACACAGGATCACAAATCAATGCCA
65 ATGGTCTTACACGGGATCACATATCGATGCCA
* * * * *
88103956 ATGCAATGACCCAGATATGGTCTTACATAGAATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
*
88104021 TGATCTTACACGGGATCACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* ** *
88104052 ATGCCATGTCCCAAACATATTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88104117 TGGTCTTACA--TG-TCA-TTA-CGAT----
66 TGGTCTTACACGGGATCACATATCGATGCCA
* **** * *
88104139 A--CCATGTCCCAGGCATGGTCTTACACAAAATCATATATCGATGCC-A---CATATCCCAAGCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCC-AG-A
* * * *** * * *
88104198 TATCGATGCCAATTCCATTTCCCAAACATTTTCATACTTGGGA-ACACA
64 CAT-G--GTC--TTACA---CGGGATCA----CATA--T-CGATGC-CA
* * * * * *
88104246 TAT-CGATG-CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCAATGCCAATTC
1 -ATGCCATGTCCCA-GACAT-----------GGTCTTACATGGGATCACATATCGATGCCAATGC
* * * * * *
88104309 CATGTCCCAAACAAGGTCTTACATGGGATCACAAATTGATTCCA
53 CATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCA
* * * * * * * *
88104353 ATGCCATGTCCCAGGCATGGACCTACACGGAATCACATATTGATGCTAATGCCATGTCGCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88104418 TGGTCTAACATGGGATCACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* ** * *
88104449 ATGCCATGCCCCAGACATGGTCTTACACAGGATCACATAACGATGCCAATACCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88104514 TAGTCTTATACGGGATCACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* *
88104545 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
*
88104610 TGGTCTTACAAGGGATCACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
**
88104641 ATGCCATGTCCTGGACATGGTCTTACAT--G-T--CAT-T--ATG---ATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* ** * * *
88104695 TTGTCTTACACGAAATAACATATCAATGCTA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * * * * * * * ***
88104726 ATGCCATATCACAGAACAT-ATC---GAT--G-CCAC-TA-CCATTTCCCA-GACATGGT--TTT
1 ATGCCATGTCCCAG-ACATGGTCTTACATGGGATCACATATCGA-TGCCAATGCCAT-GTCCCAG
** * ****
88104779 ACATGGGATCACATATCAATGC-CA-AT-GACATGTCTCA
63 ACATGGTCTTACA-CGGGAT-CACATATCG--ATG-C-CA
* ** ** * * * * * *
88104816 A--ACATGGT--CTTACATGGGATCACAAAT-CGATTCA-A-ATGCCATCTCCTA-GACATGGT-
1 ATGCCAT-GTCCCAGACAT-GG-TCTTACATGGGA-TCACATAT-CGAT-GCCAATGCCAT-GTC
*** ** * *** * * *
88104872 -CTTTCATGGGATCACATATCGATGCTA-AT-GCCATATCC-
59 CCAGACATGGTCTTACA-CGGGAT-C-ACATATCGAT-GCCA
* * ** * ** * *
88104910 TTGACATGGT--CTTACAAGGGATAACAT---A-------TCGATGCCAATGCCATGTCCTAGAC
1 ATGCCAT-GTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
*
88104963 ATGGTCTTACA--TG-T--CAT-T--ATG---
65 ATGGTCTTACACGGGATCACATATCGATGCCA
* * ** ** * * *
88104984 TTGCCATGTCCCA-AGCATGGTCTTACACGAAATCATGTAAT-GATGCCAATGTCATATCCTAGA
1 ATGCCATGTCCCAGA-CATGGTCTTACATGGGATCACAT-ATCGATGCCAATGCCATGTCCCAGA
* * ** *
88105047 GCAT-ATC--A-ATGCCAATGC-CAT-T---TCCCA
64 -CATGGTCTTACACG-GGAT-CACATATCGATGCCA
* * * **** ** * * *
88105074 A--ACATTGT--CATACTTGGGAACACATATTGATGC-CA-ATCCCATGTCCCA-GACATGGT--
1 ATGCCA-TGTCCCAGACATGGTCTTACAT-GGGAT-CACATAT-CGATG-CCAATGCCAT-GTCC
** ** ** ** * *
88105130 CTTACATGG-AAT-CAC-AAATCA-ATGGCAATTCC-
60 CAGACATGGTCTTACACGGGATCACATATCGATGCCA
* * * * * *
88105162 ATGCCC-----CAAACACGGTGTTACATGGGATCACAAATTGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* * *
88105222 TGGTCTTACACCGAATCACATATTGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * * * *
88105253 ATGCCATGTCACAGACATGGTCTAATATAGGATCACATATCGATGCCAATGCCATGTCCCACATA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88105318 TGGTCTTACACAGGATCACATAACGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * *
88105349 ATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGTCAATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
*
88105414 TGGTCTTACATGGGATCACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* ** *
88105445 ATTCCATGTCCCAGACATGGTCTTACAAAGGATCACATTTCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* ** * *
88105510 TGGCCTTACACGAAATAACATATCGATGCTA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * * ** * * * ***
88105541 ATGCCATAT-TCAGAACAT-ATC---GATGCCACTGC-CAT-T---T-CCCA-GACAAGGTTTTA
1 ATGCCATGTCCCAG-ACATGGTCTTACATGGGA-T-CACATATCGATGCCAATG-CCATGTCCCA
* * * * ** *
88105594 CA-AGGGATC--ACA---TATC-GATGCCAATGCCA
62 GACATGG-TCTTACACGGGATCACATATCGATGCCA
* ** ** ** * * * * * **
88105623 TAT-CTCAGATATGATCTTACATGGGATCACAAAT-CGATTCGA-AT-GCCATGTCCCA-GATAT
1 -ATGC-C--ATGT-CCCAGACAT-GG-TCTTACATGGGA-TC-ACATATCGATG-CCAATGCCAT
** ** * *** * *
88105683 GGT--CTTACATGGGATCACAAATCGATC-C-TAATGCCATATCC-
56 -GTCCCAGACATGGTCTTAC-ACGGGATCACAT-AT-CGAT-GCCA
* * ** * ** * *
88105724 TTGACATGGT--CTTACAGGGGATAACAT---A-----TA--GATGCCAATACCATGTCCCAGAC
1 ATGCCAT-GTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
* * * *
88105777 ATGGTCTTACATGAGATGACATATCGATGCTA
65 ATGGTCTTACACGGGATCACATATCGATGCCA
* * * ** *
88105809 ATGCCATGTACTAGACATGGTCTAACATGGGATCACATATCGATGATAATGCCATGTCTCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88105874 TGGTCTTATACGGGAACACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * *
88105905 ATGCCATGTCCCAGAAATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88105970 TAGTCTTACATGGGATCACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * *
88106001 ATGTCATGTCCCAGACATGGTCTTACATGCGAT----TA-C---G---ATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
** *
88106055 TGGTCTTACACGAAATCATATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * * * ** * * *
88106086 ATGTCATTTCCCAAACATTGTCATAGTTGGGAACACATATCGATGCCAACGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* * * *
88106151 TGGTCTTACACAGAATCACATATTGATGCAA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * *
88106182 AAGCCATGTCGCAGACATGGTCTAACATGGGATCACATATCGATGCCAATGCCATGCCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88106247 TGGTCTTACACAGGATCACATAACAAAGCCAATGCAATGAAGCCA
66 TGGTCTTACACGGGATCACAT----------AT-C---GATGCCA
*
88106292 ATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88106357 TGGTCTTACA--TG-T--CAT-T--A---CG
66 TGGTCTTACACGGGATCACATATCGATGCCA
**** * * *
88106377 ATGCCATGTCCCAGACATGGTCTTACACAAAATCATATATCGATGCCAATGCCATTTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* * ** * * *
88106442 TTGTCATACTTGGGATCATATATCAATGTCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * ** * * * *
88106473 ATGCCATGTCCTAGACATGGTTTTACACAGGATCACAAATCAATGCCAATGCAATGTCCCAGATA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
** * *
88106538 TGGTCTTACATAGAATCACATATCAATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * *
88106569 ATGCCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATGCCGTGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* * *
88106634 TAGTCTTACATGGGATCACATATCGATTCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * *
88106665 ATGCCATGTCCTAGACATGGTCTTACAT--G-T--CAT-T--A---CGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
** * * *
88106719 TGGTCTTACACGAAATAACATATCGATACTA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* ** * * * * * ** * * ***
88106750 ATGCCATATCTTAAAACAT-ATC---GAT--G-CCAC-TA-CCATTTTCTA-GACATGGT--TTT
1 ATGCCATGTC-CCAGACATGGTCTTACATGGGATCACATATCGA-TGCCAATGCCAT-GTCCCAG
* ** * *** * *
88106803 ACTTGGGATCACATATCGCTGC-CA-ATGCCATGTCTC-
63 ACATGGTCTTACA-CGGGAT-CACATAT-CGATG-C-CA
* ** ** * * * *
88106839 A-GACATGGT--CTTACATGGGATCACA---AATC-GAT-TCGAATGCC-AT-----GTCCTAGA
1 ATGCCAT-GTCCCAGACATGGTCTTACATGGGATCACATATCG-ATGCCAATGCCATGTCCCAGA
* * *
88106890 CATGGTCTTTCATGGGATCACATATCGATGCTA
64 CATGGTCTTACACGGGATCACATATCGATGCCA
* *** * * *
88106923 ATGCCATATCATTGACATGATCTTACAGGGGATAACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88106988 TGGTCTTACA--TG-T--CAT-T--A---CG
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * ** ** * *
88107008 ATGCCATGTCCCAGACATTGTCTTACACGAAATCATGTATCGATG-CAATGCCATTTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* * ** * *
88107072 TTGTCATACTTGGGAACACATATAGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* ** * *
88107103 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATC-ATTGCCAATTTCATGCCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA-TGCCAATGCCATGTCCCAGAC
* * * *
88107167 ACGGTCTTACATGGGATCACAAATTGATGCCA
65 ATGGTCTTACACGGGATCACATATCGATGCCA
* * *
88107199 ATGCCATGTCCCAGACATGGTGTTACA-GGGAATCACATATTGATGCCAATGCCATGTCGCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACATGGG-ATCACATATCGATGCCAATGCCATGTCCCAGAC
* * *
88107263 ATGGTATAACATGGGATCACATATCGATGCCA
65 ATGGTCTTACACGGGATCACATATCGATGCCA
** *
88107295 ATGCCATGTCCCAGACATGGTCTTACACAGGATCACATAACGATGCCAAT-CCTATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCC-ATGTCCCAGAC
* *
88107359 ATGGTCTTACACGGGATCACATATTGATGCTA
65 ATGGTCTTACACGGGATCACATATCGATGCCA
*
88107391 ATGCCATGTCCCAGACATGGTCTTAGATGGGATCACATATCGATGCCAAAT-CCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCC-AATGCCATGTCCCAGAC
* * *
88107455 ATTGTCTTATAAGGGATCACATATCGATGCCA
65 ATGGTCTTACACGGGATCACATATCGATGCCA
* * ** * * * *
88107487 ATGCCATGTCCTAGACATGGTCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGAAC
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAG-AC
* ** * *
88107552 AT-ATCGATGCCAC-TG--C-CAT-T---TCCCA
65 ATGGTC--TTACACGGGATCACATATCGATGCCA
* ***** ** * ** * * *
88107577 A--ACATG-GATTTACATGGGATCACATATCGATTC-CA-ATGCCATGTCTC-A-GACATG-GCC
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGGA-TCACATAT-CGATG-C-CAATGCCATGTCCC
** * * *
88107634 TTACATGG-----G-----ATCACAAATCGATGCGA
61 AGACATGGTCTTACACGGGATCACATATCGATGCCA
* * * * * **
88107660 ATGCCATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATGCTAATGTCATATCCTTGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* * *
88107725 TGGTTTTACAGGGGATAACATATCGATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * * * *
88107756 ATGCCATGTCCCAAACATGGTCTTATACGGGATCACATATCGATGCTAATGCCATGTACTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
88107821 TGGTCTTACATGGGATCACATATCGATGCTA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * *
88107852 ATGCCATGTCCCAGACATGGTCTTATATGGGAACACATATCGATGCCATTGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
* * *
88107917 TGGTCTTATATGGGATCACATATCAATGCCA
66 TGGTCTTACACGGGATCACATATCGATGCCA
* * * * *
88107948 ATGCCATGTCCGAGACA-GATTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCTAAAC
1 ATGCCATGTCCCAGACATG-GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
*
88108012 ATTGTCTTACA
65 ATGGTCTTACA
88108023 TGTCATTACG
Statistics
Matches: 3334, Mismatches: 794, Indels: 766
0.68 0.16 0.16
Matches are distributed among these distances:
73 2 0.00
74 7 0.00
75 9 0.00
76 6 0.00
77 10 0.00
78 3 0.00
79 8 0.00
80 2 0.00
81 6 0.00
82 19 0.01
83 30 0.01
84 64 0.02
85 451 0.14
86 158 0.05
87 71 0.02
88 89 0.03
89 52 0.02
90 120 0.04
91 37 0.01
92 18 0.01
93 19 0.01
94 26 0.01
95 66 0.02
96 1867 0.56
97 15 0.00
98 4 0.00
99 4 0.00
100 5 0.00
101 3 0.00
102 2 0.00
103 2 0.00
105 3 0.00
106 4 0.00
107 13 0.00
108 10 0.00
109 8 0.00
110 78 0.02
114 3 0.00
117 4 0.00
119 2 0.00
120 22 0.01
121 2 0.00
122 2 0.00
123 1 0.00
124 7 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
TGGTCTTACACGGGATCACATATCGATGCCA
Found at i:88104127 original size:48 final size:48
Alignment explanation
Indices: 88103846--88104128 Score: 332
Period size: 48 Copynumber: 5.9 Consensus size: 48
88103836 ATATCCCAGG
* * * * *
88103846 ACATATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * * **
88103894 AAATATCAATGTCAATGCCATGTCCTAGACACGGTTTTACACAGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * * *
88103942 ACAAATCAATGCCAATGCAATGACCCAGATATGGTCTTACATAGAATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
88103990 ACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* **
88104038 ACATATCGATGCCAATGCCATGTCCCAAACATATTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
*
88104086 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
88104129 TCATTACGAT
Statistics
Matches: 194, Mismatches: 41, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 194 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:88104269 original size:48 final size:48
Alignment explanation
Indices: 88104196--88104669 Score: 606
Period size: 48 Copynumber: 9.9 Consensus size: 48
88104186 ATATCCCAAG
* * * ** * * *
88104196 CATATCGATGCCAATTCCATTTCCCAAACATTTTCATACTTGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
88104244 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * *
88104292 CAAATCAATGCCAATTCCATGTCCCAAACAAGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * * * *
88104340 CAAATTGATTCCAATGCCATGTCCCAGGCATGGACCTACACGGAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * *
88104388 CATATTGATGCTAATGCCATGTCGCAGACATGGTCTAACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* **
88104436 CATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * *
88104484 CATAACGATGCCAATACCATGTCCCAGACATAGTCTTATACGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
88104532 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88104580 CATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACAAGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
**
88104628 CATATCGATGCCAATGCCATGTCCTGGACATGGTCTTACATG
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
88104670 TCATTATGAT
Statistics
Matches: 366, Mismatches: 60, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 366 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
Found at i:88104821 original size:48 final size:48
Alignment explanation
Indices: 88104741--88104975 Score: 292
Period size: 48 Copynumber: 4.9 Consensus size: 48
88104731 ATATCACAGA
* * * * *
88104741 ACATATCGATGCCACTACCATTTCCCAGACATGGTTTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC
* * *
88104789 ACATATCAATGCCAATGACATGT-CTCAAACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCT-AGACATGGTCTTACATGGGATC
* * * * *
88104837 ACAAATCGATTCAAATGCCATCTCCTAGACATGGTCTTTCATGGGATC
1 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC
* * * * *
88104885 ACATATCGATGCTAATGCCATATCCTTGACATGGTCTTACAAGGGATA
1 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC
88104933 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATG
88104976 TCATTATGTT
Statistics
Matches: 157, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 154 0.98
49 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC
Found at i:88105107 original size:48 final size:48
Alignment explanation
Indices: 88105048--88108024 Score: 1693
Period size: 48 Copynumber: 63.9 Consensus size: 48
88105038 TATCCTAGAG
* * * * * * *
88105048 CATATCAATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88105096 CATATTGATGCCAATCCCATGTCCCAGACATGGTCTTACATGGAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * * * *
88105144 CAAATCAATGGCAATTCCATGCCCCAAACACGGTGTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * ** *
88105192 CAAATTGATGCCAATGCCATGTCCCAGACATGGTCTTACACCGAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * *
88105240 CATATTGATGCCAATGCCATGTCACAGACATGGTCTAATATAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * **
88105288 CATATCGATGCCAATGCCATGTCCCACATATGGTCTTACACAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* *
88105336 CATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* *
88105384 CATATCGATGTCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* **
88105432 CATATCGATGCCAATTCCATGTCCCAGACATGGTCTTACAAAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * ** *
88105480 CATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * **
88105528 CATATCGATGCTAATGCCATAT-TCAGAACAT-ATC---GATGCCACTGC-
1 CATATCGATGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGA-T-CA
* * * ** * * * ** ** * **
88105573 CATTTCCCA-GACAA-G-GTTTTACAAGGGAT-CACATATCGATGCCAATGC-
1 CATAT-CGATGCCAATGCCATGTCCCAGACATGGTCTTA-C-ATG-GGAT-CA
** ** * *
88105621 CATATC--T--CAGAT---ATGAT--CTTACATGGGATCACA---AATC-
1 CATATCGATGCCA-ATGCCATG-TCCCAGACATGGTCTTACATGGGATCA
* *
88105658 GAT-TCGAATGCC-AT-----GTCCCAGATATGGTCTTACATGGGATCA
1 CATATCG-ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * ** * *
88105700 CAAATCGAT-CCTAATGCCATATCCTTGACATGGTCTTACAGGGGATAA
1 CATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * *
88105748 CATATAGATGCCAATACCATGTCCCAGACATGGTCTTACATGAGATGA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * *
88105796 CATATCGATGCTAATGCCATGTACTAGACATGGTCTAACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
** * * * *
88105844 CATATCGATGATAATGCCATGTCTCAGACATGGTCTTATACGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88105892 CATATCGATGCCAATGCCATGTCCCAGAAATGGTCTTACACGAGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
*
88105940 CATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* *
88105988 CATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACATGCGAT--
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * **
88106034 --TA-C---G---ATGCCATGTCCTAGACATGGTCTTACACGAAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * * ** *
88106073 TATATCGATGCCAATGTCATTTCCCAAACATTGTCATAGTTGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * ** *
88106121 CATATCGATGCCAACGCCATGTCCCAAACATGGTCTTACACAGAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * *
88106169 CATATTGATGCAAAAGCCATGTCGCAGACATGGTCTAACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* **
88106217 CATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88106265 CATAACAAAGCCAATG-CAATGAAGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCA
1 CATATC---G---ATGCCAAT---GCC-ATG---TC--CCAGACATGGTCTTACATGGGATCA
88106327 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT--G-T--
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* ****
88106370 CAT-T--A---CGATGCCATGTCCCAGACATGGTCTTACACAAAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * *
88106412 TATATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * **
88106460 TATATCAATGTCAATGCCATGTCCTAGACATGGTTTTACACAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * *
88106508 CAAATCAATGCCAATGCAATGTCCCAGATATGGTCTTACATAGAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88106556 CATATCAATGCCAATGCCATGTCCCAGACATGATCTTACACGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88106604 CATATCGATGCCAATGCCGTGTCCCAAACATAGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* *
88106652 CATATCGATTCCAATGCCATGTCCTAGACATGGTCTTACAT--G-T--
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * ** *
88106695 CAT-T--A---CGATGCCATGTCCCAAACATGGTCTTACACGAAATAA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * ** * * * *
88106737 CATATCGATACTAATGCCATATCTTAAAACAT-ATC---GAT--G-CCA
1 CATATCGATGCCAATGCCATGTC-CCAGACATGGTCTTACATGGGATCA
* ** * * *** * ** * ** *
88106779 C-TA-CCATTTTCTA-GACATGGT--TTTACTTGGGATCACATATCGCTGC-
1 CATATCGA-TGCCAATGCCAT-GTCCCAGACATGGTCTTACAT-GGGAT-CA
* * ** ** * *
88106825 CA-ATGCCATGTCTC-A-GACATGGT--CTTACATGGGATCACAAAT-CGATTCGA
1 CATAT-CGATG-C-CAATGCCAT-GTCCCAGACAT-GG-TCTTACATGGGA-TC-A
* * * *
88106875 -AT-GCCATG----TC-C---T---AGACATGGTCTTTCATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *** * * *
88106910 CATATCGATGCTAATGCCATATCATTGACATGATCTTACAGGGGATAA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
88106958 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT--G-T--
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * **
88107001 CAT-T--A---CGATGCCATGTCCCAGACATTGTCTTACACGAAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
** * * * * * *
88107043 TGTATCGATG-CAATGCCATTTCCCAAACATTGTCATACTTGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
*
88107090 CATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* ** * * *
88107138 CAAATC-ATTGCCAATTTCATGCCCCAAACACGGTCTTACATGGGATCA
1 CATATCGA-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107186 CAAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACA-GGGAATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ATCA
* * * *
88107234 CATATTGATGCCAATGCCATGTCGCAGACATGGTATAACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
**
88107282 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* *
88107330 CATAACGATGCCAAT-CCTATGTCCCAGACATGGTCTTACACGGGATCA
1 CATATCGATGCCAATGCC-ATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107378 CATATTGATGCTAATGCCATGTCCCAGACATGGTCTTAGATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107426 CATATCGATGCCAAAT-CCATGTCCCAGACATTGTCTTATAAGGGATCA
1 CATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * ** *
88107474 CATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACACGAAATAA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * * **
88107522 CATATCAATGCTAATGCCATATCCCAGAACAT-ATC---GATGCCACTGC-
1 CATATCGATGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGA-T-CA
* * ***** ** * **
88107568 CAT-T---TCCCAA--ACATG-GATTTACATGGGATCACATATCGATTC-
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGA-TCA
* * * ** *
88107610 CA-ATGCCATGTCTC-A-GACATG-GCCTTACATGG---G-------ATCA
1 CATAT-CGATG-C-CAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107647 CAAATCGATGCGAATGCCATGTCCCAGATATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * * * ** * * *
88107695 CATTTCGATGCTAATGTCATATCCTTGACATGGTTTTACAGGGGATAA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107743 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTATACGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107791 CATATCGATGCTAATGCCATGTACTAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107839 CATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107887 CATATCGATGCCATTGCCATGTCCTAGACATGGTCTTATATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
88107935 CATATCAATGCCAATGCCATGTCCGAGACA-GATTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATG-GTCTTACATGGGATCA
* * * *
88107983 CATATCGATGCCAATGTCATGTCCTAAACATTGTCTTACATG
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
88108025 TCATTACGAT
Statistics
Matches: 2272, Mismatches: 482, Indels: 350
0.73 0.16 0.11
Matches are distributed among these distances:
35 1 0.00
36 15 0.01
37 133 0.06
38 33 0.01
39 4 0.00
40 16 0.01
41 14 0.01
42 29 0.01
43 30 0.01
44 12 0.01
45 24 0.01
46 12 0.01
47 54 0.02
48 1805 0.79
49 28 0.01
50 5 0.00
51 1 0.00
53 7 0.00
54 6 0.00
56 6 0.00
57 7 0.00
59 1 0.00
62 29 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
Found at i:88105610 original size:76 final size:77
Alignment explanation
Indices: 88105479--88105631 Score: 200
Period size: 76 Copynumber: 2.0 Consensus size: 77
88105469 ACAAAGGATC
* * * *
88105479 ACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACAAGGCCTTACAAGAAATAACATATCGATGCCAATG
88105544 CCATAT-TCAGA
66 CCATATCTCAGA
* * ** ** *
88105555 ACATATCGATGCCACTGCCATTTCCCAGACAAGGTTTTACAAGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACAAGGCCTTACAAGAAATAACATATCGATGCCAATG
88105620 CCATATCTCAGA
66 CCATATCTCAGA
88105632 TATGATCTTA
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
76 60 0.92
77 5 0.08
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (77 bp):
ACATATCGATGCCAATGCCATGTCCCAGACAAGGCCTTACAAGAAATAACATATCGATGCCAATG
CCATATCTCAGA
Found at i:88105659 original size:124 final size:124
Alignment explanation
Indices: 88105431--88105671 Score: 311
Period size: 124 Copynumber: 1.9 Consensus size: 124
88105421 ACATGGGATC
* * *
88105431 ACATATCGATGCCAATTCCATGTCCCAGACATGGTCTTACAAAGGATCACATTTCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAAGGATCACATATCGATGCCAATG
* * * *
88105496 CCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCTAATGCCATATTCAGA
66 CCATATCCCAGACATGACCTTACACGAAATAACAAATCGATGCGAATGCCATATTCAGA
* * * *
88105555 ACATATCGATGCCACTGCCATTTCCCAGACAAGGTTTTACAAGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAAGGATCACATATCGATGCCAATG
* * * * ** * *
88105620 CCATATCTCAGATATGATCTTACATGGGATCACAAATCGATTCGAATGCCAT
66 CCATATCCCAGACATGACCTTACACGAAATAACAAATCGATGCGAATGCCAT
88105672 GTCCCAGATA
Statistics
Matches: 98, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
124 98 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (124 bp):
ACATATCGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAAGGATCACATATCGATGCCAATG
CCATATCCCAGACATGACCTTACACGAAATAACAAATCGATGCGAATGCCATATTCAGA
Found at i:88105670 original size:172 final size:172
Alignment explanation
Indices: 88105383--88105721 Score: 444
Period size: 172 Copynumber: 2.0 Consensus size: 172
88105373 ACACGGGATC
* * * * *
88105383 ACATATCGATGTCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATT
1 ACATATCGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGATGCCAATG
* * **
88105448 CCATGTCCCAGACATGGTCTTACAAAGGATCACATTTCGATGCCAATGCCATGTCCCAGACATGG
66 CCATATCCCAGACATGATCTTACAAAGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
* *
88105513 CCTTACACGAAATAACATATCGATGCTAATGCCATATTCAGA
131 CCTTACACGAAATAACAAATCGATCCTAATGCCATATTCAGA
* * *
88105555 ACATATCGATGCCACTGCCATTTCCCAGACAAGGTTTTACAAGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGATGCCAATG
* * ** * * *
88105620 CCATATCTCAGATATGATCTTACATGGGATCACAAATCGATTCGAATGCCATGTCCCAGATATGG
66 CCATATCCCAGACATGATCTTACAAAGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
* * ** *
88105685 TCTTACATGGGATCACAAATCGATCCTAATGCCATAT
131 CCTTACACGAAATAACAAATCGATCCTAATGCCATAT
88105722 CCTTGACATG
Statistics
Matches: 141, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
172 141 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (172 bp):
ACATATCGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGATGCCAATG
CCATATCCCAGACATGATCTTACAAAGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
CCTTACACGAAATAACAAATCGATCCTAATGCCATATTCAGA
Found at i:88105732 original size:220 final size:220
Alignment explanation
Indices: 88105335--88106201 Score: 601
Period size: 220 Copynumber: 3.8 Consensus size: 220
88105325 ACACAGGATC
* * *
88105335 ACATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGTCAATG
1 ACATAACGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGATGCCAATG
* * * *
88105400 CCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAGACATGG
66 CCATATCCTAGACATGATCTTACATGGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
** *
88105465 TCTTACAAAGGATCACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACA
131 TCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACACGAAATAACA
* * *
88105530 TATCGATGCTAATGCCATATTCAGA
196 TATAGATGCCAATACCATATTCAGA
* * * *
88105555 ACATATCGATGCCACTGCCATTTCCCAGACAAGGTTTTACAAGGGATCACATATCGATGCCAATG
1 ACATAACGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGATGCCAATG
* * * *
88105620 CCATAT-CTCAGATATGATCTTACATGGGATCACAAATCGATTCGAATGCCATGTCCCAGATATG
66 CCATATCCT-AGACATGATCTTACATGGGATCACAAATCGATGCCAATGCCATGTCCCAGACATG
** ** * * **
88105684 GTCTTACATGGGATCACAAATCGAT-CCTAATGCCATATCCTTGACATGGTCTTACAGGGGATAA
130 GTCTTACAAAGGATCACAAATCGATGCC-AATGCCATATCCCAGACATGGCCTTACACGAAATAA
88105748 CATATAGATGCCAATACCATGTCCCAGACATGGTCTTACATGAGA
194 CATATAGATGCCAATACCA--T-------A-----TT-C---AGA
* * * * * * * **
88105793 TGACATATCGATGCTAATGCCATGTACTAGACATGGTCTAACATGGGATCACATATCGATGATAA
1 --ACATAACGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGATGCCAA
* * * * * * *
88105858 TGCCATGT-CTCAGACATGGTCTTATACGGGAACACATATCGATGCCAATGCCATGTCCCAGAAA
64 TGCCATATCCT-AGACATGATCTTACATGGGATCACAAATCGATGCCAATGCCATGTCCCAGACA
* * * * * * **
88105922 TGGTCTTAC-ACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGAT
128 TGGTCTTACAAAG-GATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACACGAAAT
* * ** * *
88105986 CACATATCGATGCCAATGTCATGTCCCAGA
192 AACATATAGATGCCAATACCATAT-TCAGA
* ** * * * * ** *
88106016 CATGGTCTTACATGCGATTACGATGCCATGTCCTAGACATGGTCTTACACGAAATCATATATCGA
1 -A----CATA-A--CGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGA
* * * * * ** * * *
88106081 TGCCAATGTCATTTCCCAAACATTG-TCATAGTTGGGAACACATATCGATGCCAACGCCATGTCC
58 TGCCAATGCCATATCCTAGACA-TGATCTTACATGGGATCACAAATCGATGCCAATGCCATGTCC
* * * * * * * * *
88106145 CAAACATGGTCTTACACAGAATCACATATTGATGCAAAAGCCATGTCGCAGACATGG
122 CAGACATGGTCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGG
88106202 TCTAACATGG
Statistics
Matches: 514, Mismatches: 98, Indels: 61
0.76 0.15 0.09
Matches are distributed among these distances:
219 4 0.01
220 177 0.34
222 2 0.00
223 3 0.01
226 5 0.01
229 135 0.26
230 4 0.01
234 2 0.00
235 1 0.00
238 4 0.01
239 1 0.00
240 174 0.34
241 2 0.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (220 bp):
ACATAACGATGCCAATGCCATGTCCCAGACAAGGTCTTACAAGGGATCACATATCGATGCCAATG
CCATATCCTAGACATGATCTTACATGGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
TCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACACGAAATAACA
TATAGATGCCAATACCATATTCAGA
Found at i:88106117 original size:133 final size:133
Alignment explanation
Indices: 88105905--88106160 Score: 377
Period size: 133 Copynumber: 1.9 Consensus size: 133
88105895 ATCGATGCCA
* *
88105905 ATGCCATGTCCCAGAAATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGAAATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCCAAACA
* * * * *
88105970 TAGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACATGCGATT
66 TAGTCATACATGGGAACACATATCGATGCCAACGCCATGTCCCAAACATGGTCTTACATGCGATT
88106035 ACG
131 ACG
* * * * *
88106038 ATGCCATGTCCTAGACATGGTCTTACACGAAATCATATATCGATGCCAATGTCATTTCCCAAACA
1 ATGCCATGTCCCAGAAATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCCAAACA
* **
88106103 TTGTCATAGTTGGGAACACATATCGATGCCAACGCCATGTCCCAAACATGGTCTTACA
66 TAGTCATACATGGGAACACATATCGATGCCAACGCCATGTCCCAAACATGGTCTTACA
88106161 CAGAATCACA
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 108 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (133 bp):
ATGCCATGTCCCAGAAATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCCAAACA
TAGTCATACATGGGAACACATATCGATGCCAACGCCATGTCCCAAACATGGTCTTACATGCGATT
ACG
Found at i:88106171 original size:181 final size:181
Alignment explanation
Indices: 88105857--88106210 Score: 444
Period size: 181 Copynumber: 2.0 Consensus size: 181
88105847 ATCGATGATA
* *
88105857 ATGCCATGTCTCAGACATGGTCTTATACGGGAACACATATCGATGCCAATGCCATGTCCCAGAAA
1 ATGCCATGTCTCAGACATGGTCTTACACGGAAACACATATCGATGCCAATGCCATGTCCCAGAAA
* * * * ** *
88105922 TGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGATC
66 TGGTCATACACGAGAACACATATCGATGCCAACGCCATGTCCCAAACATAGTCTTACACAGAATC
* * * *
88105987 ACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACATGCGATTACG
131 ACATATCGATGCAAAAGCCATGTCCCAGACATGGTCTAACATGCGATTACG
* * *
88106038 ATGCCATGTC-CTAGACATGGTCTTACAC-GAAATCATATATCGATGCCAATGTCATTTCCCA-A
1 ATGCCATGTCTC-AGACATGGTCTTACACGGAAA-CACATATCGATGCCAATGCCATGTCCCAGA
* *** * *
88106100 ACATTGTCATAGTTGGGAACACATATCGATGCCAACGCCATGTCCCAAACATGGTCTTACACAGA
64 A-ATGGTCATACACGAGAACACATATCGATGCCAACGCCATGTCCCAAACATAGTCTTACACAGA
* *
88106165 ATCACATATTGATGCAAAAGCCATGTCGCAGACATGGTCTAACATG
128 ATCACATATCGATGCAAAAGCCATGTCCCAGACATGGTCTAACATG
88106211 GGATCACATA
Statistics
Matches: 146, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
180 6 0.04
181 140 0.96
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (181 bp):
ATGCCATGTCTCAGACATGGTCTTACACGGAAACACATATCGATGCCAATGCCATGTCCCAGAAA
TGGTCATACACGAGAACACATATCGATGCCAACGCCATGTCCCAAACATAGTCTTACACAGAATC
ACATATCGATGCAAAAGCCATGTCCCAGACATGGTCTAACATGCGATTACG
Found at i:88107568 original size:29 final size:28
Alignment explanation
Indices: 88107520--88107581 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
88107510 TACACGAAAT
*
88107520 AACATATCAATGCTAATGCCATATCCCA
1 AACATATCAATGCCAATGCCATATCCCA
* * *
88107548 GAACATATCGATGCCACTGCCATTTCCCA
1 -AACATATCAATGCCAATGCCATATCCCA
88107577 AACAT
1 AACAT
88107582 GGATTTACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.35, C:0.31, G:0.10, T:0.24
Consensus pattern (28 bp):
AACATATCAATGCCAATGCCATATCCCA
Found at i:88107602 original size:77 final size:77
Alignment explanation
Indices: 88107473--88107618 Score: 177
Period size: 77 Copynumber: 1.9 Consensus size: 77
88107463 ATAAGGGATC
* * *
88107473 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACACGAAATAACATATCAATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
88107538 CCATATCCCAGA
66 CCATATCCCAGA
* * * ** * * *
88107550 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATTCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACACGAAATAACATATCAATGCCAAT
88107614 GCCAT
65 GCCAT
88107619 GTCTCAGACA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
77 56 0.98
78 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (77 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
CCATATCCCAGA
Found at i:88107708 original size:173 final size:173
Alignment explanation
Indices: 88107377--88107718 Score: 445
Period size: 173 Copynumber: 2.0 Consensus size: 173
88107367 ACACGGGATC
* * * *
88107377 ACATATTGATGCTAATGCCATGTCCCAGACATGGTCTTAGATGGGATCACATATCGATGCCAAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
* * * * *
88107442 CCATGTCCCAGACATTGTCTTATAAGGGATCACATATCGATGCCAATGCCATGTCCTAGACATGG
66 CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
88107507 TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
131 TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
* * *
88107550 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATTCC-AA
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATATCGATGCCAAA
* * * *
88107613 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGATGCGAATGCCATGTCCCAGATAT
65 T-CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCCATGTCCCAGACAT
* ** * * * *
88107678 GGTCTTACATGGGATCACATTTCGATGCTAATGTCATATCC
129 GGTCTTACACGAAATAACATATCAATGCTAATGCCATATCC
88107719 TTGACATGGT
Statistics
Matches: 144, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
172 3 0.02
173 140 0.97
174 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (173 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
Found at i:88107727 original size:221 final size:220
Alignment explanation
Indices: 88107329--88108013 Score: 601
Period size: 221 Copynumber: 3.0 Consensus size: 220
88107319 ACACAGGATC
* * *
88107329 ACATAACGATGCCAATCCTATGTCCCAGACATGGTCTTACACGGGATCACATATTGATGCTAATG
1 ACATAACGATGCCAATCCTATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGCCAATG
* * * *
88107394 CCATGTCCCAGACATGGTCTTAGATGGGATCACATATCGATGCCAAATCCATGTCCCAGACATTG
66 CCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAATCCATGTCCCAGACATGG
* *
88107459 TCTTATAAGGGATCACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACACGAAATAACA
131 TCTTACAAGGGATCACATATCGATGCCAATGCCATATCCTAGACATGGTCTTACACGAAATAACA
*
88107524 TATCAATGCTAATGCCATATCCCAGA
196 TATCAATGCCAATGCCATATCCCA-A
* * * * *
88107550 ACATATCGATGCCACTGCC-ATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATTCCAA
1 ACATAACGATGCCAAT-CCTATGTCCCAAACATGG-TCTTACACGGGATCACATATCGATGCCAA
* * *
88107613 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGATG-CGAATGCCATGTCCCAGATA
64 TGCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAAT-CCATGTCCCAGACA
* * * * * * * **
88107677 TGGTCTTACATGGGATCACATTTCGATGCTAATGTCATATCCTTGACATGGTTTTACAGGGGATA
128 TGGTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCTAGACATGGTCTTACACGAAATA
* *
88107742 ACATATCGATGCCAATGCCATGTCCCAA
193 ACATATCAATGCCAATGCCATATCCCAA
* *
88107770 ACATGGTCTTATACGGGAT-CACATATCGATGCTAATG-CCATGTACTAGACATGGTCTTACATG
1 ACA------TA-AC--GATGC-CA-ATC----CT-ATGTCC-----C-AAACATGGTCTTACACG
* * * * *
88107833 GGATCACATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAACACATATCGATGC
44 GGATCACATATCGATGCCAATGCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGC
* * * * * * *
88107898 C-ATTGCCATGTCCTAGACATGGTCTTATATGGGATCACATATCAATGCCAATGCCATGTCCGAG
109 CAAAT-CCATGTCCCAGACATGGTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCTAG
* * ** * * * * *
88107962 ACA-GATTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCTAA
173 ACATG-GTCTTACACGAAATAACATATCAATGCCAATGCCATATCCCAA
88108010 ACAT
1 ACAT
88108014 TGTCTTACAT
Statistics
Matches: 378, Mismatches: 57, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
220 8 0.02
221 180 0.48
222 3 0.01
226 2 0.01
227 1 0.00
228 1 0.00
229 6 0.02
230 1 0.00
233 1 0.00
234 3 0.01
235 2 0.01
239 3 0.01
240 166 0.44
241 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (220 bp):
ACATAACGATGCCAATCCTATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGCCAATG
CCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAATCCATGTCCCAGACATGG
TCTTACAAGGGATCACATATCGATGCCAATGCCATATCCTAGACATGGTCTTACACGAAATAACA
TATCAATGCCAATGCCATATCCCAA
Found at i:88109669 original size:10 final size:10
Alignment explanation
Indices: 88109656--88109689 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
88109646 AATCAAATAT
88109656 CAATATAAGC
1 CAATATAAGC
88109666 CAATATAAGC
1 CAATATAAGC
88109676 CAATATAAGC
1 CAATATAAGC
88109686 CAAT
1 CAAT
88109690 TTATATGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (10 bp):
CAATATAAGC
Found at i:88111692 original size:68 final size:66
Alignment explanation
Indices: 88111620--88111766 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 66
88111610 CATCATGTGT
* * * *
88111620 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGCAGGACACCA
88111683 TGTAG
62 TGTAG
** * *
88111688 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGCAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGCAGGACACCATGT
88111753 AG
65 AG
88111755 ACAAGAGAGCTA
1 ACAAGAGAGCTA
88111767 TGAGATAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 24 0.35
65 3 0.04
66 4 0.06
67 24 0.35
68 13 0.19
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGCAGGACACCATGTA
G
Found at i:88111725 original size:64 final size:66
Alignment explanation
Indices: 88111644--88111766 Score: 169
Period size: 64 Copynumber: 1.9 Consensus size: 66
88111634 AGACATTATG
* * * *
88111644 ATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGCGTGATACCAGTGCAGGACACCATGTAGACAAGAGAGCTACGGGATA
88111707 T
66 T
* *
88111708 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGCAGGACACCATGTAGACAAGAGAGCTA
1 ATGTAGCTAGGTCGCATGCGTGATACCA-GTGCAGGACACCATGTAGACAAGAGAGCTA
88111767 TGAGATAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
64 24 0.48
66 2 0.04
67 24 0.48
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGCGTGATACCAGTGCAGGACACCATGTAGACAAGAGAGCTACGGGATA
T
Found at i:88116080 original size:68 final size:66
Alignment explanation
Indices: 88116008--88116179 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
88115998 CATCATGTGT
* * * *
88116008 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
88116071 TGTAG
62 TGTAG
** * *
88116076 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
88116141 AG
65 AG
* * * *
88116143 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
88116180 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:88116113 original size:64 final size:64
Alignment explanation
Indices: 88116032--88116215 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
88116022 AGACATTATG
* * *
88116032 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
88116096 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
88116161 AA
63 AA
* * *
88116163 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
88116216 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:88117297 original size:2 final size:2
Alignment explanation
Indices: 88117290--88117320 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
88117280 TCATGACATG
88117290 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
88117321 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:88123430 original size:31 final size:31
Alignment explanation
Indices: 88123389--88123452 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
88123379 CCTTTTCATA
*
88123389 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
88123420 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
88123451 TT
1 TT
88123453 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:88123698 original size:24 final size:24
Alignment explanation
Indices: 88123665--88123811 Score: 208
Period size: 24 Copynumber: 6.2 Consensus size: 24
88123655 GGCCTTGCCT
*
88123665 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
88123689 CTTTTTATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
**
88123713 C-TTTAATAACTGGGGTGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
88123736 TTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
88123760 CTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
88123784 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
88123807 CTTTT
1 CTTTT
88123812 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
23 40 0.37
24 68 0.63
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:88123722 original size:47 final size:47
Alignment explanation
Indices: 88123667--88123810 Score: 202
Period size: 47 Copynumber: 3.1 Consensus size: 47
88123657 CCTTGCCTCT
*
88123667 TTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
**
88123714 TTTAATAACTGGGGTGTAAG-CCTTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTT-ATAACTGGGGCATAAGCCC
* * *
88123761 TTTTGATAACTAGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
88123808 TTT
1 TTT
88123811 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
46 10 0.12
47 55 0.64
48 19 0.22
49 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
Found at i:88123751 original size:71 final size:71
Alignment explanation
Indices: 88123661--88123812 Score: 232
Period size: 71 Copynumber: 2.1 Consensus size: 71
88123651 TGGAGGCCTT
* *
88123661 GCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTGG
1 GCCT-TTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGG
**
88123726 GGTGTAA
65 GGCATAA
* *
88123733 GCCTTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGG
1 GCCTTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGG
88123798 GCATAA
66 GCATAA
88123804 GCCCTTTTT
1 G-CCTTTTT
88123813 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
71 62 0.85
72 11 0.15
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (71 bp):
GCCTTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGG
GCATAA
Found at i:88123886 original size:20 final size:20
Alignment explanation
Indices: 88123861--88123927 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
88123851 TTATTAATAC
88123861 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
88123881 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
88123901 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
88123921 ACCATGT
1 ATCATGT
88123928 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:88123892 original size:11 final size:11
Alignment explanation
Indices: 88123861--88123916 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
88123851 TTATTAATAC
88123861 ATCATGTGCAT
1 ATCATGTGCAT
*
88123872 ATCA--TACAT
1 ATCATGTGCAT
88123881 ATCATGTGCAT
1 ATCATGTGCAT
*
88123892 ATCA--TACAT
1 ATCATGTGCAT
*
88123901 GTCATGTGCAT
1 ATCATGTGCAT
88123912 ATCAT
1 ATCAT
88123917 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:88123996 original size:25 final size:25
Alignment explanation
Indices: 88123964--88124011 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
88123954 ATACATAAAC
* * *
88123964 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
88123989 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
88124012 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:88127969 original size:40 final size:40
Alignment explanation
Indices: 88127924--88128090 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
88127914 CGGAATATAA
88127924 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
88127964 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
88128004 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
88128044 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
88128083 CCGGATAT
1 CCGGATAT
88128091 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:88128074 original size:80 final size:79
Alignment explanation
Indices: 88127924--88128090 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
88127914 CGGAATATAA
* *
88127924 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
88127989 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
88128004 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
88128066 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
88128083 CCGGATAT
1 CCGGATAT
88128091 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:88128939 original size:17 final size:19
Alignment explanation
Indices: 88128916--88128961 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
88128906 AAGAAGCATG
88128916 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
88128934 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
88128952 AATCATGCTC
1 AATCATGCTC
88128962 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:88131365 original size:37 final size:37
Alignment explanation
Indices: 88131312--88131433 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
88131302 TATAAAAGAA
*
88131312 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
88131349 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
88131386 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
88131423 GTCTCACCCGG
1 GTCTTACCCGG
88131434 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:88131590 original size:49 final size:49
Alignment explanation
Indices: 88131535--88131798 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
88131525 TTTTACATTA
*
88131535 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
88131584 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
88131633 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
88131682 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * * *
88131731 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
88131780 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
88131799 CATATATGTA
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 208 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:88135133 original size:29 final size:29
Alignment explanation
Indices: 88135096--88135433 Score: 631
Period size: 29 Copynumber: 11.7 Consensus size: 29
88135086 TGTTGAAAAA
* * *
88135096 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135125 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135154 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
88135183 CTCGCACACATGGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
88135212 CTCGCACACATGGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135241 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135270 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135299 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135328 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135357 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135386 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
88135415 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
88135434 AATCATTCGC
Statistics
Matches: 304, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 304 1.00
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:88137578 original size:37 final size:37
Alignment explanation
Indices: 88137525--88137646 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
88137515 TATAAAAGAA
*
88137525 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
88137562 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
88137599 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
88137636 GTCTCACCCGG
1 GTCTTACCCGG
88137647 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:88137802 original size:49 final size:49
Alignment explanation
Indices: 88137747--88138009 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
88137737 TTTTACATTA
88137747 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
88137796 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88137845 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
88137894 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
88137943 GCCATTAGGCC-TATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
88137991 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
88138010 CATATATGTA
Statistics
Matches: 207, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 44 0.21
49 163 0.79
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:88141789 original size:40 final size:40
Alignment explanation
Indices: 88141734--88141943 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
88141724 AACATTGGAA
88141734 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
88141774 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
88141814 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
88141854 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
88141893 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
88141934 CTATATCCGG
1 ATATATCCGG
88141944 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:88149934 original size:40 final size:40
Alignment explanation
Indices: 88149879--88150088 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
88149869 AACATTGGAA
88149879 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
88149919 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
88149959 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
88149999 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
88150038 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
88150079 CTATATCCGG
1 ATATATCCGG
88150089 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:88154168 original size:33 final size:33
Alignment explanation
Indices: 88154126--88154195 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
88154116 CATAAGAATG
88154126 AGTAGAACCAGGATCAATCAATACAATTACATT
1 AGTAGAACCAGGATCAATCAATACAATTACATT
88154159 AGTAGAACCAGGATCAATCAATACAATTACATT
1 AGTAGAACCAGGATCAATCAATACAATTACATT
88154192 AGTA
1 AGTA
88154196 TCATAAAGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (33 bp):
AGTAGAACCAGGATCAATCAATACAATTACATT
Found at i:88156944 original size:15 final size:15
Alignment explanation
Indices: 88156924--88156961 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
88156914 AGATCGTAAG
*
88156924 CAAACATATTGAAAT
1 CAAACATACTGAAAT
88156939 CAAACATACTGAAAT
1 CAAACATACTGAAAT
88156954 CAAACATA
1 CAAACATA
88156962 AAAACTTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.21
Consensus pattern (15 bp):
CAAACATACTGAAAT
Found at i:88158778 original size:15 final size:15
Alignment explanation
Indices: 88158758--88158792 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
88158748 TGGCTTATTT
*
88158758 TATTTTATTATATAA
1 TATTTTATAATATAA
*
88158773 TATTTTATAATATAT
1 TATTTTATAATATAA
88158788 TATTT
1 TATTT
88158793 CATTTACAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTTTATAATATAA
Found at i:88164787 original size:25 final size:25
Alignment explanation
Indices: 88164758--88164805 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
88164748 TTATACCATG
* * *
88164758 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
88164783 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
88164806 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:88164874 original size:20 final size:20
Alignment explanation
Indices: 88164849--88164907 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
88164839 TAAATATGGT
88164849 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
88164869 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
88164889 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
88164908 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:88164988 original size:23 final size:24
Alignment explanation
Indices: 88164958--88165052 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
88164948 GAGGAAGTGA
88164958 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
88164981 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
88165005 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
88165029 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
88165053 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:88165026 original size:47 final size:49
Alignment explanation
Indices: 88164959--88165052 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
88164949 AGGAAGTGAA
*
88164959 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
88165006 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
88165053 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:88165295 original size:38 final size:38
Alignment explanation
Indices: 88165244--88165406 Score: 241
Period size: 38 Copynumber: 4.4 Consensus size: 38
88165234 CGTTTACAGT
88165244 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
88165282 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
88165313 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
88165351 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
88165389 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
88165407 GCATGATTGA
Statistics
Matches: 113, Mismatches: 4, Indels: 15
0.86 0.03 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 69 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:88165306 original size:31 final size:31
Alignment explanation
Indices: 88165268--88165383 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
88165258 AGTATTATGA
88165268 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
88165299 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
88165335 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
88165368 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
88165384 TATGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:88165320 original size:69 final size:69
Alignment explanation
Indices: 88165244--88165383 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
88165234 CGTTTACAGT
88165244 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
88165309 ATGA
66 ATGA
*
88165313 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
88165378 ATGA
66 ATGA
88165382 AA
1 AA
88165384 TATGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:88172566 original size:28 final size:28
Alignment explanation
Indices: 88172497--88172597 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
88172487 GACAAGATTG
* * * *
88172497 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
88172527 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
88172555 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
88172584 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
88172598 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:88180519 original size:28 final size:28
Alignment explanation
Indices: 88180450--88180550 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
88180440 GACAAGATTG
* * * *
88180450 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
88180480 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
88180508 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
88180537 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
88180551 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:88184351 original size:28 final size:28
Alignment explanation
Indices: 88184282--88184382 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
88184272 GACAAGATTG
* * * *
88184282 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
88184312 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
88184340 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
88184369 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
88184383 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:88188077 original size:25 final size:25
Alignment explanation
Indices: 88188048--88188095 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
88188038 TTATACCATG
* * *
88188048 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
88188073 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
88188096 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:88188196 original size:20 final size:20
Alignment explanation
Indices: 88188138--88188197 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
88188128 ATAAATATGG
*
88188138 TATGTATGATATGCACATAA
1 TATGTATGATATGCACATGA
* *
88188158 AATGTATGATACGCACATGA
1 TATGTATGATATGCACATGA
88188178 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
88188198 GGTAATCATA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:88188278 original size:23 final size:24
Alignment explanation
Indices: 88188248--88188342 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
88188238 GAGGAAGTGA
88188248 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
88188271 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
88188295 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
88188319 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
88188343 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:88188316 original size:47 final size:49
Alignment explanation
Indices: 88188249--88188342 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
88188239 AGGAAGTGAA
*
88188249 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
88188296 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
88188343 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:88188585 original size:38 final size:38
Alignment explanation
Indices: 88188534--88188694 Score: 237
Period size: 38 Copynumber: 4.4 Consensus size: 38
88188524 CATTTACAGT
88188534 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
88188572 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
88188603 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
88188641 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
88188679 AAAGGGCTACGGCCCA
1 AAA-GGCTTCGGCCCA
88188695 ATGCATGATT
Statistics
Matches: 111, Mismatches: 4, Indels: 15
0.85 0.03 0.12
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 69 0.62
39 11 0.10
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:88188596 original size:31 final size:31
Alignment explanation
Indices: 88188558--88188673 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
88188548 AGTATTATGA
88188558 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
88188589 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
88188625 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
88188658 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
88188674 TATGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:88188610 original size:69 final size:69
Alignment explanation
Indices: 88188534--88188673 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
88188524 CATTTACAGT
88188534 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
88188599 ATGA
66 ATGA
*
88188603 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
88188668 ATGA
66 ATGA
88188672 AA
1 AA
88188674 TATGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:88191031 original size:29 final size:29
Alignment explanation
Indices: 88190996--88191095 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
88190986 AATGTGACTA
* *
88190996 GGCCTAACGGCCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
88191025 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
88191054 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
88191082 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
88191096 GATACAAGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:88192872 original size:16 final size:16
Alignment explanation
Indices: 88192851--88192882 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
88192841 GTTGTAACAC
*
88192851 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
88192867 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
88192883 TCTCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:88194244 original size:29 final size:29
Alignment explanation
Indices: 88194209--88194308 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 29
88194199 AATGTGACTA
88194209 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAACGGGCCATATAAATGTGATTTG
* * *
88194238 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATGTGATTTG
* *
88194267 GGCCT-ACTGGGCCATATGAATATGA-TTG
1 GGCCTAAC-GGGCCATATAAATGTGATTTG
* *
88194295 GGCTTAATGGGCCA
1 GGCCTAACGGGCCA
88194309 GATACAAGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
28 14 0.24
29 45 0.76
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (29 bp):
GGCCTAACGGGCCATATAAATGTGATTTG
Found at i:88196049 original size:29 final size:29
Alignment explanation
Indices: 88195992--88196093 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
88195982 TACCTATATC
* * *
88195992 TGGCCCATTAAGCCC-AATCATAT-TCATA
1 TGGCCCGTTAGGCCCAAATCACATGT-ATA
* *
88196020 TGGCCCGTTAGGCTCAAATCACCTGTATA
1 TGGCCCGTTAGGCCCAAATCACATGTATA
*
88196049 TGGCCCGTTAGGCCCAAATCACATTTATA
1 TGGCCCGTTAGGCCCAAATCACATGTATA
*
88196078 AGGCCCGTTAGGCCCA
1 TGGCCCGTTAGGCCCA
88196094 GTCACATTCA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
28 12 0.19
29 50 0.79
30 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (29 bp):
TGGCCCGTTAGGCCCAAATCACATGTATA
Found at i:88197038 original size:33 final size:33
Alignment explanation
Indices: 88196996--88197085 Score: 153
Period size: 33 Copynumber: 2.7 Consensus size: 33
88196986 AAAAGAAAGA
* *
88196996 AAAACAAAAGGGTTTTCGGCTTTTTAGGTCTTG
1 AAAAGAAAAGGGTTTTCGGCTTTTTAGATCTTG
*
88197029 AAAAGAAAAGGGTTTTCAGCTTTTTAGATCTTG
1 AAAAGAAAAGGGTTTTCGGCTTTTTAGATCTTG
88197062 AAAAGAAAAGGGTTTTCGGCTTTT
1 AAAAGAAAAGGGTTTTCGGCTTTT
88197086 AAAGAAAGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (33 bp):
AAAAGAAAAGGGTTTTCGGCTTTTTAGATCTTG
Found at i:88200512 original size:28 final size:28
Alignment explanation
Indices: 88200480--88200565 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 28
88200470 TACCTATATC
* *
88200480 TGGCCCATTAAGCGCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCATATTCATA
* *
88200508 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCATATTCATA
* *
88200537 TGGCCCGTTAGGCCCAGTCATATTCATA
1 TGGCCCATTAGGCCCAATCATATTCATA
88200565 T
1 T
88200566 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 24 0.49
29 25 0.51
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCATATTCATA
Found at i:88200645 original size:17 final size:18
Alignment explanation
Indices: 88200623--88200658 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
88200613 TTGCCTATTA
88200623 TGGGCCCAAT-AGCCCAT
1 TGGGCCCAATCAGCCCAT
*
88200640 TGGGCCCATTCAGCCCAT
1 TGGGCCCAATCAGCCCAT
88200658 T
1 T
88200659 CCGGCCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.36, G:0.22, T:0.22
Consensus pattern (18 bp):
TGGGCCCAATCAGCCCAT
Found at i:88202105 original size:16 final size:16
Alignment explanation
Indices: 88202068--88202101 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
88202058 GCAAAGAAAG
88202068 TTTGGGATTTCGAGAT
1 TTTGGGATTTCGAGAT
*
88202084 TTTGGG-TTTCGGGAT
1 TTTGGGATTTCGAGAT
88202099 TTT
1 TTT
88202102 TGGGGCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.12, C:0.06, G:0.32, T:0.50
Consensus pattern (16 bp):
TTTGGGATTTCGAGAT
Found at i:88206964 original size:42 final size:42
Alignment explanation
Indices: 88206883--88206972 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
88206873 CGTTTACTTG
* **
88206883 ATGCCATTGTCCAACTATGGTCTTACACGAAGTTTCATATCA
1 ATGCCATTGTCCAACTATGGTCTTACACGAAATCACATATCA
* *
88206925 ATGCCA-TGTCCAGGAC-ATGGTCTTACATGAAATCACATATCG
1 ATGCCATTGTCCA--ACTATGGTCTTACACGAAATCACATATCA
88206967 ATGCCA
1 ATGCCA
88206973 ATCTCATATC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 6 0.15
42 33 0.80
43 2 0.05
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATTGTCCAACTATGGTCTTACACGAAATCACATATCA
Found at i:88207012 original size:48 final size:48
Alignment explanation
Indices: 88206923--88207422 Score: 635
Period size: 48 Copynumber: 10.6 Consensus size: 48
88206913 AGTTTCATAT
* **
88206923 CAATGCCATGT-CCAGGACATGGTCTTACATGAAATCACATATCGATGC
1 CAATGCCATGTCCCA-GACATGGTCTTACACGGGATCACATATCGATGC
* * * *
88206971 CAAT-CTCATATCTTC-GATATGGTCTTACATGGGATCACATATCGATGC
1 CAATGC-CATGTC-CCAGACATGGTCTTACACGGGATCACATATCGATGC
* * *
88207019 CAATGCCATGTCCCAGATATGGTCTTACACAGGATCACATATC-AGTGG
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGA-TGC
* * *
88207067 CAATACCATGTCCTAGACATGGTCTT--AC---AT--GATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
* * * * *
88207108 TAGTGCCATGTCCCAGACATGGTCTTACATGGGATTACATATCGATTC
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
* *
88207156 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATTGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
88207204 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
* * * * *
88207252 CAATACTATGTCCCATATATGGTCTTACACGGGATCACATATTGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
*
88207300 CAATGCCATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
* *
88207348 CAATGCCATGTCCTAGACATGATCTTACACGGGATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
88207396 CAATGCCATGTCCCAGACATGGTCTTA
1 CAATGCCATGTCCCAGACATGGTCTTA
88207423 TATGTCATTA
Statistics
Matches: 394, Mismatches: 44, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
41 29 0.07
42 1 0.00
43 3 0.01
46 4 0.01
47 3 0.01
48 352 0.89
49 1 0.00
50 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
Found at i:88209605 original size:49 final size:49
Alignment explanation
Indices: 88209527--88209652 Score: 164
Period size: 49 Copynumber: 2.6 Consensus size: 49
88209517 AGATGCTGAA
* *
88209527 GCCATGTCCTAGACATGGTCTTACACTGGCTTTCATATAACAAG-GTCAAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAAC-AGTGTCAAT
* * * **
88209577 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAACAGTGTCAAT
88209626 GCCATGTCCCAGACAGGTCTTACACTG
1 GCCATGTCCCAGACAGGTCTTACACTG
88209653 ACACACAACA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
48 1 0.01
49 53 0.78
50 14 0.21
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAACAGTGTCAAT
Found at i:88209745 original size:48 final size:46
Alignment explanation
Indices: 88209693--88209840 Score: 163
Period size: 48 Copynumber: 3.1 Consensus size: 46
88209683 TAGGTTTTCT
*
88209693 ACTAGCTTGTATATTGCGAGGCCGATGCATGTCCCAGACATGTCTTAC
1 ACTAGCTT-AATATT-CGAGGCCGATGCATGTCCCAGACATGTCTTAC
* * * *
88209741 ACTAGCTCTCAT-CTCAATGCCGATGCATGTCCCAGACATGTCTTAC
1 ACTAGCT-TAATATTCGAGGCCGATGCATGTCCCAGACATGTCTTAC
* * * *
88209787 AATGGCTTAAATATCTCGAGGCCTATGTATGTCCCAGACATGTCTTAC
1 ACTAGCTT-AATAT-TCGAGGCCGATGCATGTCCCAGACATGTCTTAC
88209835 ACTAGC
1 ACTAGC
88209841 ACGCATATCA
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 37 0.45
47 1 0.01
48 42 0.51
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (46 bp):
ACTAGCTTAATATTCGAGGCCGATGCATGTCCCAGACATGTCTTAC
Found at i:88209849 original size:48 final size:48
Alignment explanation
Indices: 88209709--88209849 Score: 169
Period size: 48 Copynumber: 3.0 Consensus size: 48
88209699 TTGTATATTG
*
88209709 CGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC--ATCT
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCT
* * * * * *
88209755 CAATGCCGATGCATGTCCCAGACATGTCTTACAATGGCTTAAATATCT
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCT
* * * *
88209803 CGAGGCCTATGTATGTCCCAGACATGTCTTACACTAGCACGCATATC
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATC
88209850 ACCCATTATC
Statistics
Matches: 76, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
46 35 0.46
48 41 0.54
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
CGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCT
Found at i:88210213 original size:30 final size:29
Alignment explanation
Indices: 88210176--88210250 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 29
88210166 AGATTTTTGA
88210176 AAAAATGACCATTTTGCCCTTAGACAGTC
1 AAAAATGACCATTTTGCCCTTAGACAGTC
**
88210205 ACAAAATGACCATTTTGCCCTTAGACTTTC
1 A-AAAATGACCATTTTGCCCTTAGACAGTC
88210235 AAAACATGACCATTTT
1 AAAA-ATGACCATTTT
88210251 ACCACTAGGC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
29 4 0.10
30 38 0.90
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.31
Consensus pattern (29 bp):
AAAAATGACCATTTTGCCCTTAGACAGTC
Found at i:88215516 original size:37 final size:37
Alignment explanation
Indices: 88215466--88215540 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
88215456 CCAATACCTT
88215466 TGGCTAAATCGTAATGACACATTCACAATTGACTATG
1 TGGCTAAATCGTAATGACACATTCACAATTGACTATG
88215503 TGGCTAAATCGTAATGACACATTCACAATTGACTATG
1 TGGCTAAATCGTAATGACACATTCACAATTGACTATG
88215540 T
1 T
88215541 CCCTATGCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (37 bp):
TGGCTAAATCGTAATGACACATTCACAATTGACTATG
Found at i:88223093 original size:40 final size:40
Alignment explanation
Indices: 88223011--88223095 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
88223001 CATTGGAATG
* *
88223011 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
**
88223051 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
88223091 ATATC
1 ATATC
88223096 AGAGCTACGG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:88229575 original size:40 final size:40
Alignment explanation
Indices: 88229516--88229665 Score: 194
Period size: 40 Copynumber: 3.8 Consensus size: 40
88229506 CATTGGAATG
* * *
88229516 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
88229556 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
88229596 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
88229636 AAATCCGGGTTAAGACCCGAAGGCAATTGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGT
88229666 CACTATAACC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
39 3 0.03
40 91 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:88242433 original size:37 final size:37
Alignment explanation
Indices: 88242354--88242436 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
88242344 AACCTTTAGT
* * *
88242354 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
88242391 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
88242428 TCGGGTCTT
1 TCGGGTCTT
88242437 TAGAGCTCGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:88242610 original size:47 final size:47
Alignment explanation
Indices: 88242541--88243295 Score: 682
Period size: 47 Copynumber: 15.3 Consensus size: 47
88242531 CCCTTCGGGA
* * * *
88242541 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
88242588 CTTATCACATATATCCACTTTCACATTCATCACAGT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACA-TCGGCCATTCGGC
* * *
88242635 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * *
88242682 CTTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
88242729 CTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
**
88242776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-C-CATTCGGC
* ** **
88242825 AC--ATCGGCCAT-TAGGC-CTTGTCACATATATACAGTTTCACATTCATCACA-TCGGC
1 -CTTATC--ACATATATACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CATTCGGC
* *
88242880 CATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGGCCATTAGGC
1 C-TTA-------TCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
88242935 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * *
88242982 CTTGTCACATATATACACCTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * * *
88243028 CTTGTCACTTATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * *
88243075 CTTGTCACTTATATACACGTTCACATTCATCACATCGGCCA-TCAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTC-GGC
* ** *
88243122 CTTATCACATATAATGGC-CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CTTATCACATAT-AT-ACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TC----GG
88243186 C
47 C
*
88243187 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
88243234 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
88243281 CTTATCACATATATA
1 CTTATCACATATATA
88243296 TATCTCATAC
Statistics
Matches: 602, Mismatches: 55, Indels: 102
0.79 0.07 0.13
Matches are distributed among these distances:
46 47 0.08
47 405 0.67
48 12 0.02
49 18 0.03
50 4 0.01
51 4 0.01
52 2 0.00
53 4 0.01
54 9 0.01
55 14 0.02
56 24 0.04
57 6 0.01
58 2 0.00
59 4 0.01
60 2 0.00
61 4 0.01
62 4 0.01
63 12 0.02
64 9 0.01
65 16 0.03
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:88242620 original size:25 final size:25
Alignment explanation
Indices: 88242591--88242669 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
88242581 ACTCGGCCTT
88242591 ATCACATATATCCACTTTCACATTC
1 ATCACATATATCCACTTTCACATTC
* ** * *
88242616 ATCACA-GTGGCCA--TTCGGCCTT-
1 ATCACATATATCCACTTTC-ACATTC
*
88242638 ATCACATATATGCACTTTCACATTC
1 ATCACATATATCCACTTTCACATTC
88242663 ATCACAT
1 ATCACAT
88242670 GGGCCATTAG
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 9 0.24
23 6 0.16
24 7 0.18
25 16 0.42
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (25 bp):
ATCACATATATCCACTTTCACATTC
Found at i:88242820 original size:18 final size:18
Alignment explanation
Indices: 88242797--88242834 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
88242787 TATACACTTT
88242797 CACATTCATCACATCGGC
1 CACATTCATCACATCGGC
88242815 CACATTCATCACATCGGC
1 CACATTCATCACATCGGC
88242833 CA
1 CA
88242835 TTAGGCCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.39, G:0.11, T:0.21
Consensus pattern (18 bp):
CACATTCATCACATCGGC
Found at i:88242829 original size:65 final size:65
Alignment explanation
Indices: 88242750--88242881 Score: 237
Period size: 65 Copynumber: 2.0 Consensus size: 65
88242740 TATGCACTTT
*
88242750 CACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* *
88242815 CACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGGC
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
88242880 CA
1 CA
88242882 TTAGGCCTTG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.29
Consensus pattern (65 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:88242836 original size:112 final size:112
Alignment explanation
Indices: 88242703--88243274 Score: 435
Period size: 112 Copynumber: 5.0 Consensus size: 112
88242693 TATACACTTT
* * *
88242703 CACATTCATCACATCAGCCATTAGGCCTTATCTCATATATGCACTTTCACATTCATCACATCGGC
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
88242768 CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CATTCGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
* *
88242815 CACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGGC
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* * * *
88242880 CATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGGC
66 CATTCGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
* *** * *
88242927 CATTAGGCCTT-ATCACATATATACACCTTCA--CATTCATCACATCGGCCAT-TAGGC-CTTGT
1 C---A--CATTCATCAC--ATCGGC-CATT-AGGCCTT-ATCACAT-----ATATA--CACTT-T
* ** ** * * *
88242987 CACATAT-AT-ACACCTTCACATTCATCAC--ATCGCCAT-TAGGC-CTTGTCAC-TT-ATATAC
48 CACAT-TCATCACATCGGC-CATTCGGC-CTTATC-ACATATATGCACTT-TCACATTCAT-CAC
***
88243044 A-CCTT
107 ATCGGC
* * *
88243049 CACATTCATCACATCGGCCATTAGGCCTTGTCACTTATATACACGTTCACATTCATCACATCGGC
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
***
88243114 CA-TCAGGCCTTATCACATATAATGGC-CTTATCACATAT-AT-ACA-CTTT
66 CATTC-GGCCTTATCACATAT-AT-GCACTT-TCACAT-TCATCACATCGGC
88243161 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* *
88243226 CATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATTGGC
66 CATTCGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
88243273 CA
1 CA
88243275 TTCGGCCTTA
Statistics
Matches: 359, Mismatches: 57, Indels: 88
0.71 0.11 0.17
Matches are distributed among these distances:
108 4 0.01
109 16 0.04
110 23 0.06
111 11 0.03
112 201 0.56
113 2 0.01
114 4 0.01
115 9 0.03
116 11 0.03
117 6 0.02
118 11 0.03
119 10 0.03
120 1 0.00
122 4 0.01
123 9 0.03
124 18 0.05
125 17 0.05
126 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (112 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTCGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
Found at i:88242839 original size:159 final size:157
Alignment explanation
Indices: 88242656--88243274 Score: 746
Period size: 159 Copynumber: 4.0 Consensus size: 157
88242646 TATGCACTTT
* *
88242656 CACATTCATCACATGGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCAGC
1 CACATT-ATCACAT-GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* * *
88242721 CATTAGGCCTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACAT
64 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
88242786 ATATACACTTTCACATTCATCACATCGGC
129 ATATACACTTTCACATTCATCACATCGGC
* *
88242815 CACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGGC
1 CACATT-ATCACAT-GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* *
88242880 CATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
64 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
88242945 ATATACACCTTCACATTCATCACATCGG-
129 ATATACACTTTCACATTCATCACATCGGC
* ** *
88242973 C-CA-T-T---A-GGCC-TT-GTCACATATAT-ACACCT-T-CAC-AT-----TCATCACATC-G
1 CACATTATCACATGGCCATTAGGC-C-T-TATCACATATATACACTTTCACATTCATCACATCGG
* * * * *
88243019 CCATTAGGCCTTGTCACTTATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTGTCACT
63 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
88243084 TATATACACGTTCACATTCATCACATCGGC
128 TATATACACTTTCACATTCATCACATCGGC
*
88243114 CATCAGGCCTTATCACAT----ATAATGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 CA-CA----TTATCACATGGCCATTA-GGCCTTATCACATATATACACTTTCACATTCATCACAT
88243175 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
60 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
* *
88243240 ACATATATGCACTTTCACATTCATCACATTGGC
125 ACATATATACACTTTCACATTCATCACATCGGC
88243273 CA
1 CA
88243275 TTCGGCCTTA
Statistics
Matches: 397, Mismatches: 34, Indels: 58
0.81 0.07 0.12
Matches are distributed among these distances:
140 89 0.22
141 11 0.03
143 2 0.01
146 1 0.00
147 4 0.01
148 5 0.01
149 13 0.03
150 8 0.02
151 3 0.01
152 6 0.02
153 1 0.00
154 1 0.00
156 1 0.00
157 2 0.01
158 11 0.03
159 239 0.60
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.31
Consensus pattern (157 bp):
CACATTATCACATGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
ATACACTTTCACATTCATCACATCGGC
Found at i:88242963 original size:206 final size:206
Alignment explanation
Indices: 88242609--88243227 Score: 756
Period size: 206 Copynumber: 3.0 Consensus size: 206
88242599 TATCCACTTT
* * *
88242609 CACATTCATCACAGTGGCCATTCGGCCTTATCACATATATGCACTTTCACATTCATCACATGGGC
1 CACATTCATCACAGTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
88242674 CATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCTCAT
66 CATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACAT
* * * *
88242739 ATATGCACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTC
131 ATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTC
88242804 ATCACATCGGC
196 ATCACATCGGC
* *
88242815 CACATTCATCACA-TCGGCCATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGG
1 CACATTCATCACAGT-GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
* *
88242879 CCATTAGGCCTTGTCACATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
65 CCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACA
*
88242944 TATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACCTTCACATT
130 TATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATT
88243009 CATCACATC-G-
195 CATCACATCGGC
* *
88243019 C-CA-T--T---A--GGCC-TT--G-----TCACTTATATACACCTTCACATTCATCACATCGGC
1 CACATTCATCACAGTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* *
88243067 CATTAGGCCTTGTCACTTATATACACGTTCACATTCATCACATCGGCCATCAGGCCTTATCACAT
66 CATTAGGCCTTGTCACATATATACACTTTCACATTCAT--CA-----CATCA-G------C-CAT
*
88243132 ATAATGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
116 -T-A-GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
88243197 ATATACACTTTCACATTCATCACATCGGC
178 ATATACACCTTCACATTCATCACATCGGC
88243226 CA
1 CA
88243228 TTAGGCCTTA
Statistics
Matches: 368, Mismatches: 23, Indels: 42
0.85 0.05 0.10
Matches are distributed among these distances:
187 67 0.18
189 2 0.01
192 1 0.00
194 6 0.02
195 5 0.01
197 1 0.00
200 1 0.00
201 1 0.00
202 4 0.01
203 3 0.01
204 2 0.01
205 85 0.23
206 189 0.51
207 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.31
Consensus pattern (206 bp):
CACATTCATCACAGTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACAT
ATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTC
ATCACATCGGC
Found at i:88243164 original size:65 final size:65
Alignment explanation
Indices: 88243072--88243199 Score: 220
Period size: 65 Copynumber: 2.0 Consensus size: 65
88243062 TCGGCCATTA
* *
88243072 GGCCTTGTCACTTATATACACGTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATAAT
1 GGCCTTATCACATATATACACGTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATAAT
* *
88243137 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCTTATCACATATATACACGTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATA
88243200 TACACTTTCA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (65 bp):
GGCCTTATCACATATATACACGTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATAAT
Done.