Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 291 of 438
Found at i:91211390 original size:20 final size:20
Alignment explanation
Indices: 91211365--91211425 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
91211355 TTATGATTAC
91211365 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
91211385 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
91211405 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
91211425 A
1 A
91211426 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:91211512 original size:25 final size:25
Alignment explanation
Indices: 91211468--91211515 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91211458 ATACATAAAC
* * *
91211468 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACGATCATTTTTA
91211493 CCTAGGGGTAAAACGATCATTTT
1 CCTAGGGGTAAAACGATCATTTT
91211516 ATATTATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACGATCATTTTTA
Found at i:91212768 original size:27 final size:27
Alignment explanation
Indices: 91212747--91213088 Score: 359
Period size: 27 Copynumber: 12.7 Consensus size: 27
91212737 AAGGGTATTT
* *
91212747 TAGTAATTTTGTAAATCGAGGGCAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
91212774 TAGTAATTCTGTAAATC-AGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
91212800 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
91212827 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
91212854 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
91212881 T-GATAATTATGTAAATCG-GGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** * * *
91212907 CGGTAATTATGTAAATTGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
91212934 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
91212961 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
91212988 CGGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
91213015 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
91213042 CAATAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
91213069 CGGTAATTCTGTAAATCGAG
1 TAGTAATTCTGTAAATCGAG
91213089 AGTACTTTGG
Statistics
Matches: 280, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
26 47 0.17
27 232 0.83
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:91212861 original size:107 final size:106
Alignment explanation
Indices: 91212749--91213088 Score: 457
Period size: 107 Copynumber: 3.2 Consensus size: 106
91212739 GGGTATTTTA
* * *
91212749 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATCAGGGTAAAACAGTAATTCTATAA
1 GTAATTCTGTAAATCGAGGGTAAAAT-GTAATTCTGTAAATCAGGGTAAAACAGTAATTCTGTAA
*
91212814 ATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
65 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
91212856 GTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCGGGGTAAAACGGTAATTATGTAA
1 GTAATTCTGTAAATCGAGGGTAAAATG-TAATTCTGTAAATCAGGGTAAAACAGTAATTCTGTAA
* *
91212921 ATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
65 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * *
91212963 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAA-TGTAATTCTGTAAATC-AGGGTAAAACAGTAATTCTGTA
* ** *
91213028 AATCAAGGGTAAAACAATAATTCTATAAA-CTGAGGGTAAAACG
64 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
91213071 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
91213089 AGTACTTTGG
Statistics
Matches: 201, Mismatches: 28, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
106 1 0.00
107 130 0.65
108 70 0.35
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (106 bp):
GTAATTCTGTAAATCGAGGGTAAAATGTAATTCTGTAAATCAGGGTAAAACAGTAATTCTGTAAA
TCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:91213103 original size:81 final size:81
Alignment explanation
Indices: 91212749--91213088 Score: 461
Period size: 81 Copynumber: 4.2 Consensus size: 81
91212739 GGGTATTTTA
* * ** *
91212749 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATA
*
91212813 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
** * *
91212829 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATA
91212894 AATCG-GGGTAAAACG
66 AATCGAGGGTAAAACG
* * * ** * *
91212909 GTAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATA
91212974 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * *
91212990 GTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATA
91213055 AA-CTGAGGGTAAAACG
66 AATC-GAGGGTAAAACG
91213071 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
91213089 AGTACTTTGG
Statistics
Matches: 226, Mismatches: 31, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
80 110 0.49
81 116 0.51
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATA
AATCGAGGGTAAAACG
Found at i:91213117 original size:54 final size:54
Alignment explanation
Indices: 91212749--91213088 Score: 443
Period size: 54 Copynumber: 6.3 Consensus size: 54
91212739 GGGTATTTTA
* * ** *
91212749 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
91212802 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
91212856 GTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
91212909 GTAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * * *
91212963 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** *
91213017 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
91213071 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
91213089 AGTACTTTGG
Statistics
Matches: 253, Mismatches: 31, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
53 86 0.34
54 167 0.66
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:91215913 original size:31 final size:31
Alignment explanation
Indices: 91215872--91215935 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
91215862 CCTTTTCATA
*
91215872 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
91215903 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
91215934 TT
1 TT
91215936 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:91216192 original size:24 final size:24
Alignment explanation
Indices: 91216128--91216269 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
91216118 GCTTTATCAT
*
91216128 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
91216153 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
91216176 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
91216199 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
91216223 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
91216247 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
91216270 TCACTTCCTC
Statistics
Matches: 113, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
23 41 0.36
24 64 0.57
25 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:91216243 original size:71 final size:71
Alignment explanation
Indices: 91216127--91216269 Score: 227
Period size: 71 Copynumber: 2.0 Consensus size: 71
91216117 TGCTTTATCA
*
91216127 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAG
91216192 CCCTTT
66 CCCTTT
* *
91216198 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATA
91216261 AGCCCTTT
64 AGCCCTTT
91216269 T
1 T
91216270 TCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
70 21 0.31
71 46 0.69
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTT
Found at i:91216344 original size:20 final size:20
Alignment explanation
Indices: 91216319--91216379 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
91216309 TTATGATTAC
91216319 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
91216339 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
91216359 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
91216379 A
1 A
91216380 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:91216453 original size:25 final size:25
Alignment explanation
Indices: 91216421--91216468 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
91216411 ATACATAAAC
* *
91216421 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACGGTCATTTTTA
91216446 CCTAGGGGTAAAACGGTCATTTT
1 CCTAGGGGTAAAACGGTCATTTT
91216469 ATATTATAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACGGTCATTTTTA
Found at i:91217725 original size:27 final size:27
Alignment explanation
Indices: 91217704--91218047 Score: 361
Period size: 27 Copynumber: 12.7 Consensus size: 27
91217694 AAGGGTATTT
* *
91217704 TAGTAATTTTGTAAATCGAGGGCAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
91217731 TAGTAATTCTGTAAATC-AGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
* *
91217758 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
91217785 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
91217812 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
91217839 T-GATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** * * *
91217866 CGGTAATTATGTAAATTGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
91217893 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
91217920 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
91217947 CGGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
91217974 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
91218001 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
91218028 CGGTAATTCTGTAAATCGAG
1 TAGTAATTCTGTAAATCGAG
91218048 AGTACTTTGG
Statistics
Matches: 283, Mismatches: 28, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
26 3 0.01
27 277 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:91217804 original size:81 final size:81
Alignment explanation
Indices: 91217706--91218047 Score: 447
Period size: 81 Copynumber: 4.2 Consensus size: 81
91217696 GGGTATTTTA
* * *
91217706 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGGTAAAACAGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA-GGGTAAAACAGTAATTCTAT
*
91217770 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAACG
* * * *
91217787 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TGATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTAT
*
91217851 AAATCGGGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * * * * * *
91217868 GTAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
91217933 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * *
91217949 GTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
91218014 AA-CTGAGGGTAAAACG
66 AATC-GAGGGTAAAACG
91218030 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
91218048 AGTACTTTGG
Statistics
Matches: 226, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 222 0.98
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:91218076 original size:54 final size:54
Alignment explanation
Indices: 91217706--91218047 Score: 445
Period size: 54 Copynumber: 6.3 Consensus size: 54
91217696 GGGTATTTTA
* * ** *
91217706 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAACG
* *
91217760 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
91217814 GTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
91217868 GTAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * * *
91217922 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* **
91217976 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
91218030 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
91218048 AGTACTTTGG
Statistics
Matches: 252, Mismatches: 34, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.00
54 250 0.99
55 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:91220776 original size:46 final size:47
Alignment explanation
Indices: 91220682--91220854 Score: 149
Period size: 47 Copynumber: 3.7 Consensus size: 47
91220672 ATAATCTCAC
*
91220682 CCATAATGAACTCGGAA-AGCAACTCAATGAGCTCAGG-TG-TTCGAAT
1 CCATAATGAACTCGGAACA-CAACTCAATGAGTTC-GGATGCTTCGAAT
* *
91220728 CCATAATGAATTCGGAACACAACTCAATGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACACAACTCAATGAGTTCGGATGCTTCGAAT
* * * * * *
91220774 CCATAGGTGAACTCGAAACGCAACTCAAGGAGTTCGGATGCCTCATAAT
1 CCATA-ATGAACTCGGAACACAACTCAATGAGTTCGGATGCTTC-GAAT
* * * * *
91220823 TC-TCACGAACTCGGACCACAACTCAAGGAGTT
1 CCATAATGAACTCGGAACACAACTCAATGAGTT
91220855 TTGATCTCAA
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.02
46 40 0.39
47 57 0.55
48 1 0.01
49 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACACAACTCAATGAGTTCGGATGCTTCGAAT
Found at i:91220807 original size:47 final size:47
Alignment explanation
Indices: 91220682--91220814 Score: 148
Period size: 46 Copynumber: 2.9 Consensus size: 47
91220672 ATAATCTCAC
*
91220682 CCATAATGAACTCGGAAA-GCAACTCAATGAGCTCAGG-TG-TTCGAAT
1 CCATAATGAACTC-GAAACGCAACTCAATGAGTTC-GGATGCTTCGAAT
* * * *
91220728 CCATAATGAATTCGGAACACAACTCAATGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGAAACGCAACTCAATGAGTTCGGATGCTTCGAAT
* *
91220774 CCATAGGTGAACTCGAAACGCAACTCAAGGAGTTCGGATGC
1 CCATA-ATGAACTCGAAACGCAACTCAATGAGTTCGGATGC
91220815 CTCATAATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
45 5 0.07
46 36 0.49
47 32 0.44
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGAAACGCAACTCAATGAGTTCGGATGCTTCGAAT
Found at i:91222885 original size:8 final size:10
Alignment explanation
Indices: 91222862--91222886 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
91222852 GGGATAAATA
91222862 TATATACTAT
1 TATATACTAT
91222872 TATATACTAT
1 TATATACTAT
91222882 TATAT
1 TATAT
91222887 TTTAATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATACTAT
Found at i:91230321 original size:12 final size:12
Alignment explanation
Indices: 91230294--91230328 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
91230284 AATAGAAGAA
*
91230294 AGAAAAATAAAG
1 AGAAAAAAAAAG
91230306 -GAAAAAAAAAG
1 AGAAAAAAAAAG
91230317 AGAAAAAAAAAG
1 AGAAAAAAAAAG
91230329 CTCTCATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (12 bp):
AGAAAAAAAAAG
Found at i:91231932 original size:40 final size:40
Alignment explanation
Indices: 91231805--91231934 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
91231795 TTGCTGGAAA
* * * *
91231805 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGA
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
91231845 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
91231885 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
91231925 TTATATCCGG
1 TTATATCCGG
91231935 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:91238555 original size:40 final size:40
Alignment explanation
Indices: 91238467--91238556 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
91238457 TTGCTGGAAA
*
91238467 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGG
* * *
91238507 CTACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GCGG
91238547 TTATATCCGG
1 TTATATCCGG
91238557 TTGTATTCCG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 4 0.10
40 38 0.90
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGG
Found at i:91247061 original size:79 final size:81
Alignment explanation
Indices: 91246925--91247107 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
91246915 TCGAATGATG
* *
91246925 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
91246989 TGTGCGAGTTTCTA-A
66 TGTGCGAGTTACTATA
* * **
91247004 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
91247066 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
91247084 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
91247108 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:91247123 original size:40 final size:40
Alignment explanation
Indices: 91246926--91247109 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
91246916 CGAATGATGT
* * *
91246926 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
91246966 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTTCTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
91247006 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91247044 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91247085 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91247110 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:91247131 original size:79 final size:79
Alignment explanation
Indices: 91246926--91247132 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
91246916 CGAATGATGT
* *
91246926 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
* *
91246989 TGTGCGAGTTTCTAATT
63 TGTGCGAGTTACTAATA
* *
91247006 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
91247068 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
91247085 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
91247133 ATTCTGAAGG
Statistics
Matches: 108, Mismatches: 11, Indels: 17
0.79 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 62 0.57
80 43 0.40
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:91256386 original size:57 final size:57
Alignment explanation
Indices: 91256319--91256432 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
91256309 TTTGAGTTAG
* *
91256319 TTTTGAATTTTGAAGTAATCGACAAAGAGTTACATGGCCAGGCGACACGGTCGTGTA
1 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCGTGTA
91256376 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCGTGTA
1 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCGTGTA
91256433 ACCCACACGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (57 bp):
TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCGTGTA
Found at i:91258907 original size:6 final size:6
Alignment explanation
Indices: 91258893--91258929 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
91258883 ATGAGTCCAC
* *
91258893 TTATCT TTATGT TTATTT TTATTT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT T
91258930 GTCTTTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:91265673 original size:21 final size:20
Alignment explanation
Indices: 91265649--91265690 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
91265639 TGAAATGCAA
91265649 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
91265670 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
91265690 T
1 T
91265691 AACTATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:91266698 original size:39 final size:39
Alignment explanation
Indices: 91266644--91266723 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
91266634 AAAAGTGTGT
*
91266644 ATATTTTTGTGTTTCCAACTGATATCTTTTAGGTTGGGC
1 ATATTTTTGTGTTTCCAACTGATATATTTTAGGTTGGGC
91266683 ATATTTTTGTGTTTCCAACTGATATATTTTAGGTTGGGC
1 ATATTTTTGTGTTTCCAACTGATATATTTTAGGTTGGGC
91266722 AT
1 AT
91266724 TAACTATCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.49
Consensus pattern (39 bp):
ATATTTTTGTGTTTCCAACTGATATATTTTAGGTTGGGC
Found at i:91272233 original size:47 final size:47
Alignment explanation
Indices: 91272180--91272371 Score: 303
Period size: 47 Copynumber: 4.1 Consensus size: 47
91272170 TTAGGATTTT
* *
91272180 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
91272227 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
91272274 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
91272321 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
91272368 AATG
1 AATG
91272372 CGAAATGTGT
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:91272481 original size:46 final size:46
Alignment explanation
Indices: 91272345--91272481 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
91272335 GAACATGTAT
* *
91272345 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
91272391 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
91272437 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
91272482 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:91272491 original size:2 final size:2
Alignment explanation
Indices: 91272484--91272508 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
91272474 ATGAGATGTG
91272484 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
91272509 TGTGGCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91278260 original size:46 final size:46
Alignment explanation
Indices: 91278197--91278463 Score: 374
Period size: 46 Copynumber: 5.8 Consensus size: 46
91278187 TTCGACATGA
* * * * *
91278197 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
* ** **
91278243 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATGTCACGT
91278290 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
* *
91278336 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
* * *
91278382 TGCCATGGTATATTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
91278428 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
91278464 TCTATCAGAG
Statistics
Matches: 203, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 3 0.01
46 161 0.79
47 39 0.19
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
Found at i:91280623 original size:11 final size:11
Alignment explanation
Indices: 91280607--91280658 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
91280597 TATACTAAAT
91280607 AAATAATAATA
1 AAATAATAATA
*
91280618 AAATAAT-ATT
1 AAATAATAATA
* *
91280628 AAATATCTCATA
1 AAATA-ATAATA
*
91280640 AAATATTAATA
1 AAATAATAATA
91280651 AAATAATA
1 AAATAATA
91280659 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:91281330 original size:63 final size:63
Alignment explanation
Indices: 91281231--91281357 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
91281221 CAAATGTGAC
91281231 ATCCTACATTCAGATTTGTCGTCAGAGTCAAGTACATGGTGTCACATCTCTACATGAGGAGTT
1 ATCCTACATTCAGATTTGTCGTCAGAGTCAAGTACATGGTGTCACATCTCTACATGAGGAGTT
91281294 ATCCTACATTCAGATTTGTCGTCAGAGTCAAGTACATGGTGTCACATCTCTACATGAGGAGTT
1 ATCCTACATTCAGATTTGTCGTCAGAGTCAAGTACATGGTGTCACATCTCTACATGAGGAGTT
91281357 A
1 A
91281358 AAGCATATGG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (63 bp):
ATCCTACATTCAGATTTGTCGTCAGAGTCAAGTACATGGTGTCACATCTCTACATGAGGAGTT
Found at i:91282326 original size:2 final size:2
Alignment explanation
Indices: 91282319--91282343 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
91282309 GTAGTTTTTA
91282319 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
91282344 ATTTAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91282767 original size:10 final size:10
Alignment explanation
Indices: 91282738--91282767 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
91282728 CAAATGGTGC
91282738 CTTTTTTTTT
1 CTTTTTTTTT
*
91282748 CTTTTCTTTT
1 CTTTTTTTTT
91282758 CTTTTTTTTT
1 CTTTTTTTTT
91282768 TATTATCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:91288479 original size:15 final size:15
Alignment explanation
Indices: 91288429--91288479 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
91288419 GAATTTGAAA
91288429 ATAAAATA-TTTAAT
1 ATAAAATATTTTAAT
* *
91288443 TTCAAAATATAATTTAAA
1 AT-AAAATAT--TTTAAT
91288461 ATAAAATATTTTAAT
1 ATAAAATATTTTAAT
91288476 ATAA
1 ATAA
91288480 TTAATATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
14 1 0.03
15 15 0.52
17 7 0.24
18 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAAAATATTTTAAT
Found at i:91288494 original size:15 final size:15
Alignment explanation
Indices: 91288476--91288512 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
91288466 ATATTTTAAT
91288476 ATAATTA-ATATAAAA
1 ATAATTATAT-TAAAA
91288491 ATAATTATATTAAAA
1 ATAATTATATTAAAA
91288506 AT-ATTAT
1 ATAATTAT
91288513 TAAATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.24
15 14 0.67
16 2 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATTATATTAAAA
Found at i:91288595 original size:15 final size:15
Alignment explanation
Indices: 91288575--91288606 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
91288565 TTAAAATATG
91288575 ATTAAATTATTTTTT
1 ATTAAATTATTTTTT
91288590 ATTAAATTATTTTTT
1 ATTAAATTATTTTTT
91288605 AT
1 AT
91288607 AATAATCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTAAATTATTTTTT
Found at i:91288812 original size:16 final size:16
Alignment explanation
Indices: 91288788--91288843 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
91288778 TGAATTACTG
* *
91288788 ATTACAACTCTATTAT
1 ATTATAACTCTATTCT
*
91288804 ATTATAACTCTATTCC
1 ATTATAACTCTATTCT
91288820 ATTATAACTCTATTCT
1 ATTATAACTCTATTCT
91288836 ATTATAAC
1 ATTATAAC
91288844 GAACCAAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTATAACTCTATTCT
Found at i:91289060 original size:19 final size:19
Alignment explanation
Indices: 91289038--91289075 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
91289028 ATTGATATAT
91289038 CTTATAAAAATAATAAAAA
1 CTTATAAAAATAATAAAAA
* *
91289057 CTTATAAATATTATAAAAA
1 CTTATAAAAATAATAAAAA
91289076 TAAAAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
CTTATAAAAATAATAAAAA
Found at i:91289071 original size:28 final size:28
Alignment explanation
Indices: 91288999--91289078 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
91288989 AATACAAAAC
*
91288999 AAAAATTAAAAATATT-TAAAAATAACT
1 AAAAATTATAAATATTATAAAAATAACT
* *
91289026 --AAATTGATATATCTTATAAAAATAA-T
1 AAAAATT-ATAAATATTATAAAAATAACT
91289052 AAAAACTTATAAATATTATAAAAATAA
1 AAAAA-TTATAAATATTATAAAAATAA
91289079 AAATATAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
25 5 0.12
26 7 0.16
27 9 0.21
28 20 0.47
29 2 0.05
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (28 bp):
AAAAATTATAAATATTATAAAAATAACT
Found at i:91289104 original size:34 final size:34
Alignment explanation
Indices: 91289041--91289109 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 34
91289031 GATATATCTT
*
91289041 ATAAAAATAATAAAAACTTATAAATATTATAAAA
1 ATAAAAATAATAAAAACTTATAAAAATTATAAAA
*
91289075 ATAAAAAT-ATAATAAA-TTCTAACAAATTATAAAA
1 ATAAAAATAATAA-AAACTTATAA-AAATTATAAAA
91289109 A
1 A
91289110 ATTTTAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 9 0.29
34 22 0.71
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (34 bp):
ATAAAAATAATAAAAACTTATAAAAATTATAAAA
Found at i:91289270 original size:30 final size:30
Alignment explanation
Indices: 91289213--91289287 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
91289203 TATTTAATAT
* * *
91289213 TAAAAA-TATT-AAAATTCATATAAACTTA
1 TAAAAATTATTAAAAAATCACAAAAACTTA
91289241 TAAAAATTATTAAAAAATCACAAAAACTTA
1 TAAAAATTATTAAAAAATCACAAAAACTTA
*
91289271 TAAATATTA-TAAAAAAT
1 TAAAAATTATTAAAAAAT
91289288 TCTAATAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
28 6 0.15
29 12 0.29
30 23 0.56
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (30 bp):
TAAAAATTATTAAAAAATCACAAAAACTTA
Found at i:91289335 original size:11 final size:11
Alignment explanation
Indices: 91289320--91289355 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
91289310 ATGAAATTAT
*
91289320 TAAAATATTTT
1 TAAAATATTTA
91289331 TAAAAT-TTTA
1 TAAAATATTTA
91289341 TAAAATATTTA
1 TAAAATATTTA
91289352 TAAA
1 TAAA
91289356 CATTCATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAAAATATTTA
Found at i:91289364 original size:21 final size:21
Alignment explanation
Indices: 91289320--91289374 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
91289310 ATGAAATTAT
* *
91289320 TAAAATATTTTTAAAATTTTA
1 TAAAATATTTATAAAATTTCA
91289341 TAAAATATTTATAAACA-TTCA
1 TAAAATATTTATAAA-ATTTCA
*
91289362 TAAAA-ACTTATAA
1 TAAAATATTTATAA
91289375 TAAATAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 22 0.73
22 1 0.03
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAAATATTTATAAAATTTCA
Found at i:91289374 original size:10 final size:9
Alignment explanation
Indices: 91289039--91289385 Score: 83
Period size: 10 Copynumber: 36.8 Consensus size: 9
91289029 TTGATATATC
91289039 TTATAAAAA
1 TTATAAAAA
*
91289048 TAATAAAAA
1 TTATAAAAA
*
91289057 CTTATAAATA
1 -TTATAAAAA
91289067 TTAT-AAAA
1 TTATAAAAA
91289075 --ATAAAAA
1 TTATAAAAA
91289082 -TATAATAAA
1 TTATAA-AAA
*
91289091 TTCTAACAAA
1 TTATAA-AAA
91289101 TTATAAAAAA
1 TTAT-AAAAA
*
91289111 TT-TTAAAA
1 TTATAAAAA
91289119 TTAATAAACATA
1 TT-ATAAA-A-A
*
91289131 TT-T-AAAT
1 TTATAAAAA
* *
91289138 TTTTAAAAGT
1 TTATAAAA-A
91289148 TTATAAAAA
1 TTATAAAAA
* *
91289157 CGTAAAAAAAA
1 --TTATAAAAA
*
91289168 TCT-TAAAAC
1 T-TATAAAAA
91289177 TTATAAAAA
1 TTATAAAAA
*
91289186 -AAT-AAAA
1 TTATAAAAA
*
91289193 TCATAAAAA
1 TTATAAAAA
* **
91289202 ATAT-TTAA
1 TTATAAAAA
91289210 -TATTAAAAA
1 TTA-TAAAAA
*
91289219 -TATTAAAA
1 TTATAAAAA
*
91289227 TTCATATAAAC
1 TT-ATA-AAAA
91289238 TTATAAAAA
1 TTATAAAAA
91289247 TTATTAAAAAA
1 TTA-T-AAAAA
* *
91289258 TCACAAAAA
1 TTATAAAAA
*
91289267 CTTATAAATA
1 -TTATAAAAA
91289277 TTATAAAAAA
1 TTAT-AAAAA
*
91289287 TTCTAATAAA
1 TTATAA-AAA
*
91289297 TTATTAAAAC
1 TTA-TAAAAA
*
91289307 TT-TATGAAA
1 TTATA-AAAA
91289316 TTATTAAAATA
1 TTA-TAAAA-A
* *
91289327 TTTTTAAAATT
1 -TTATAAAA-A
91289338 TTATAAAATA
1 TTATAAAA-A
*
91289348 TTTATAAACA
1 -TTATAAAAA
91289358 TTCATAAAAA
1 TT-ATAAAAA
91289368 CTTATAATAAA
1 -TTATAA-AAA
*
91289379 TAATAAA
1 TTATAAA
91289386 TAATAAAAAA
Statistics
Matches: 250, Mismatches: 49, Indels: 78
0.66 0.13 0.21
Matches are distributed among these distances:
6 2 0.01
7 12 0.05
8 30 0.12
9 67 0.27
10 88 0.35
11 46 0.18
12 5 0.02
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:91290064 original size:11 final size:10
Alignment explanation
Indices: 91289989--91290064 Score: 64
Period size: 10 Copynumber: 7.5 Consensus size: 10
91289979 TTTTATGATT
91289989 TTTTTTATAA
1 TTTTTTATAA
91289999 TTTTTTATAA
1 TTTTTTATAA
* ***
91290009 GTTTATGGCAA
1 -TTTTTTATAA
*
91290020 -TTTTAATAA
1 TTTTTTATAA
91290029 TTTTTTTATAA
1 -TTTTTTATAA
*
91290040 TTTTTTATGA
1 TTTTTTATAA
91290050 TTTTTTATAA
1 TTTTTTATAA
*
91290060 GTTTT
1 TTTTT
91290065 AGGAATTTTA
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
9 5 0.10
10 32 0.63
11 14 0.27
ACGTcount: A:0.28, C:0.01, G:0.07, T:0.64
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:91290065 original size:41 final size:43
Alignment explanation
Indices: 91289975--91290073 Score: 100
Period size: 41 Copynumber: 2.4 Consensus size: 43
91289965 TGGTTCAATT
* *
91289975 TAAGTTTT-ATGATTTTTTTTATAATTTTTTATAAGTTTATGG
1 TAAGTTTTAATGAATTTTTTTATAATTTTTTATAAGTTTATGA
* * * *
91290017 CAA-TTTTAAT-AATTTTTTTATAATTTTTTATGA-TTTTTTA
1 TAAGTTTTAATGAATTTTTTTATAATTTTTTATAAGTTTATGA
*
91290057 TAAGTTTT-AGGAATTTT
1 TAAGTTTTAATGAATTTT
91290074 AATATGTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
40 7 0.15
41 35 0.76
42 4 0.09
ACGTcount: A:0.28, C:0.01, G:0.09, T:0.62
Consensus pattern (43 bp):
TAAGTTTTAATGAATTTTTTTATAATTTTTTATAAGTTTATGA
Found at i:91290072 original size:20 final size:20
Alignment explanation
Indices: 91290030--91290083 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
91290020 TTTTAATAAT
* *
91290030 TTTTTTATAATTTTTTATGA
1 TTTTTTATAATGTTTTAGGA
91290050 TTTTTTATAA-GTTTTAGGA
1 TTTTTTATAATGTTTTAGGA
* *
91290069 ATTTTAAT-ATGTTTT
1 TTTTTTATAATGTTTT
91290084 GATAAAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 1 0.03
19 18 0.62
20 10 0.34
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (20 bp):
TTTTTTATAATGTTTTAGGA
Found at i:91290398 original size:26 final size:26
Alignment explanation
Indices: 91290369--91290425 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
91290359 CACGAAACAG
*
91290369 ATCATCAGCA-CTCTGCTTGCTTTTTT
1 ATCATC-GCATCTCTACTTGCTTTTTT
* *
91290395 ATCAATCTCATTTCTACTTGCTTTTTT
1 ATC-ATCGCATCTCTACTTGCTTTTTT
91290422 ATCA
1 ATCA
91290426 CAGTAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.19, C:0.25, G:0.07, T:0.49
Consensus pattern (26 bp):
ATCATCGCATCTCTACTTGCTTTTTT
Found at i:91294430 original size:40 final size:40
Alignment explanation
Indices: 91294371--91294508 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
91294361 AAACCAAGTA
* * *
91294371 CCTTCGGGATTTAG-TCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
91294410 CCTGCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
91294450 CCTTCGGGATTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
91294490 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91294509 TTGCCATCCG
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 14 0.16
40 73 0.84
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91302622 original size:40 final size:40
Alignment explanation
Indices: 91302539--91302695 Score: 221
Period size: 39 Copynumber: 4.0 Consensus size: 40
91302529 ATTTAGTTGG
* * *
91302539 ATATAGCT-ACTCGCTCAAATGCCTGC-GGACTTAGCCCGG
1 ATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
91302578 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
91302618 ATATAGTAACTCGCACAAATGCCTTCGGGATTTAGCCCGA
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
* * *
91302658 AT-TAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCG
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
91302696 GTTGCCATCC
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 54 0.50
40 53 0.49
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
Found at i:91302673 original size:79 final size:79
Alignment explanation
Indices: 91302539--91302695 Score: 219
Period size: 79 Copynumber: 2.0 Consensus size: 79
91302529 ATTTAGTTGG
* * *
91302539 ATATAGCTACTCGCTCAAATGCCTGCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
1 ATATAGCTACTCGCACAAATGCCTGCGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTC
91302604 GGGACTTAGCCCGA
66 GGGACTTAGCCCGA
* * *
91302618 ATATAG-TAACTCGCACAAATGCCTTCGGGATTTAGCCCGAAT-TAGTCACTAGCACAAATGCCT
1 ATATAGCT-ACTCGCACAAATGCCTGC-GGACTTAGCCCGAATATAGTAACTAGCACAAATGCCT
*
91302681 TTGGGACTTAGCCCG
64 TCGGGACTTAGCCCG
91302696 GTTGCCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 55 0.80
80 13 0.19
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
ATATAGCTACTCGCACAAATGCCTGCGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTC
GGGACTTAGCCCGA
Found at i:91305475 original size:19 final size:19
Alignment explanation
Indices: 91305451--91305489 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
91305441 TAGGAGCCCT
91305451 ATGCCATCATTCTCCACTC
1 ATGCCATCATTCTCCACTC
91305470 ATGCCATCATTCTCCACTC
1 ATGCCATCATTCTCCACTC
91305489 A
1 A
91305490 AGGCTATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.41, G:0.05, T:0.31
Consensus pattern (19 bp):
ATGCCATCATTCTCCACTC
Found at i:91305502 original size:19 final size:19
Alignment explanation
Indices: 91305453--91305503 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
91305443 GGAGCCCTAT
*
91305453 GCCATCATTCTCCACTCAT
1 GCCATCATTCTCCACTCAG
91305472 GCCATCATTCTCCACTCAAG
1 GCCATCATTCTCCACTC-AG
*
91305492 GCTATCA-TCTCC
1 GCCATCATTCTCC
91305504 CTCCTTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 22 0.76
20 7 0.24
ACGTcount: A:0.22, C:0.41, G:0.08, T:0.29
Consensus pattern (19 bp):
GCCATCATTCTCCACTCAG
Found at i:91308432 original size:107 final size:108
Alignment explanation
Indices: 91308259--91308474 Score: 398
Period size: 107 Copynumber: 2.0 Consensus size: 108
91308249 AAAAAATACG
*
91308259 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTGTTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
91308324 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
91308367 TCAAAAATTTTAT-AGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
* *
91308431 AAAACTTATTCTAACTTAATATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
91308474 T
1 T
91308475 TTTTTGTTTA
Statistics
Matches: 105, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 92 0.88
108 13 0.12
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (108 bp):
TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
Found at i:91310137 original size:3 final size:3
Alignment explanation
Indices: 91310129--91310160 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
91310119 GGTTGATATA
*
91310129 AGT AGT AGT AGT AGT AGT GGT AGT AGT AGT AG
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AG
91310161 GTGTTTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (3 bp):
AGT
Found at i:91316639 original size:46 final size:44
Alignment explanation
Indices: 91316535--91316642 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
91316525 TGTCTTTGAC
** * * *
91316535 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
91316579 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
91316625 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
91316643 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:91322777 original size:46 final size:44
Alignment explanation
Indices: 91322673--91322780 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
91322663 TGTCTTTGAC
** * * *
91322673 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
91322717 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
91322763 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
91322781 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:91335754 original size:19 final size:19
Alignment explanation
Indices: 91335730--91335767 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
91335720 TGTCTAATTA
91335730 GGTTTATGAAATTTGATTT
1 GGTTTATGAAATTTGATTT
*
91335749 GGTTTATGAATTTTGATTT
1 GGTTTATGAAATTTGATTT
91335768 AGGATTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (19 bp):
GGTTTATGAAATTTGATTT
Found at i:91336230 original size:18 final size:19
Alignment explanation
Indices: 91336186--91336235 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
91336176 TATTTTAAAG
*
91336186 GTATTTGTTAATTTTTGTTA
1 GTATTT-TTAATGTTTGTTA
*
91336206 TTA-TTTTAATGTTT-TTA
1 GTATTTTTAATGTTTGTTA
91336223 GTATTTTTAATGT
1 GTATTTTTAATGT
91336236 ATTATATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 17 0.65
19 2 0.08
20 2 0.08
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (19 bp):
GTATTTTTAATGTTTGTTA
Found at i:91337639 original size:23 final size:23
Alignment explanation
Indices: 91337600--91337649 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 23
91337590 AAATTGTAAA
91337600 TATTTTTAAGCAATTAATATT-AAT
1 TATTTTTAA-CAATTAAT-TTGAAT
91337624 TATTTTTAA-AACTTAATTTGAAT
1 TATTTTTAACAA-TTAATTTGAAT
91337647 TAT
1 TAT
91337650 AATTTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.17
23 11 0.46
24 9 0.38
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (23 bp):
TATTTTTAACAATTAATTTGAAT
Found at i:91340324 original size:26 final size:26
Alignment explanation
Indices: 91340267--91340318 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
91340257 GAGCCATATT
* *
91340267 AGCTCACAAAGAGCCTTTAATCGAGA
1 AGCTCACAAAGAGCCTATAATCAAGA
91340293 AGCTCACAAAGAGCC-ATATATCAAGA
1 AGCTCACAAAGAGCCTATA-ATCAAGA
91340319 CACTCATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.17
Consensus pattern (26 bp):
AGCTCACAAAGAGCCTATAATCAAGA
Found at i:91349779 original size:49 final size:49
Alignment explanation
Indices: 91349725--91350106 Score: 485
Period size: 49 Copynumber: 7.7 Consensus size: 49
91349715 CTGGTATGCA
* * *
91349725 TAGTAGTCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
91349774 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
91349824 TAGTAGCCTGCACTTAGTATTACACACGTGACCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AA-TTATCCGGTACACG
* * *
91349875 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
91349924 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
91349974 TAGTAGCCTGCATTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
* *
91350025 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
91350074 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
91350107 TCACAATAGA
Statistics
Matches: 282, Mismatches: 46, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
49 113 0.40
50 94 0.33
51 75 0.27
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:91349950 original size:150 final size:150
Alignment explanation
Indices: 91349707--91350107 Score: 721
Period size: 150 Copynumber: 2.7 Consensus size: 150
91349697 ACTTGTAGCA
* * * *
91349707 AAAGCTATCTGGTATGCATAGTAGTCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 AAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
91349772 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
66 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
*
91349837 TTAGTATTACACACGTGACC
131 TTAGTACTACACACGTGACC
* *
91349857 GAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACA
1 AAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
*
91349922 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAT
66 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
*
91349987 TTAGTACTACACACGTGATC
131 TTAGTACTACACACGTGACC
91350007 AAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 AAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
91350072 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
66 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
91350108 CACAATAGAT
Statistics
Matches: 240, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 240 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (150 bp):
AAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGACC
Found at i:91352979 original size:20 final size:20
Alignment explanation
Indices: 91352954--91353043 Score: 171
Period size: 20 Copynumber: 4.5 Consensus size: 20
91352944 CATGGCCTGC
91352954 CCACACGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
*
91352974 CCACACAGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
91352994 CCACACGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
91353014 CCACACGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
91353034 CCACACGGGC
1 CCACACGGGC
91353044 ATGTAACCCC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 68 1.00
ACGTcount: A:0.26, C:0.41, G:0.24, T:0.09
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAA
Found at i:91356280 original size:48 final size:48
Alignment explanation
Indices: 91356175--91356299 Score: 207
Period size: 48 Copynumber: 2.6 Consensus size: 48
91356165 CATGCTTAAC
91356175 CGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAAT
1 CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAAT
* * * *
91356222 CGTGGCATATCAACTTAGCACCACGTTACATGTATCAATATGTGTAAT
1 CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAAT
91356270 CGTGGTATATCCACTTAGCACCACGTTACA
1 CGTGGTATATCCACTTAGCACCACGTTACA
91356300 CATATAACCG
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 26 0.37
48 45 0.63
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (48 bp):
CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAAT
Found at i:91356322 original size:133 final size:130
Alignment explanation
Indices: 91356084--91356330 Score: 327
Period size: 133 Copynumber: 1.9 Consensus size: 130
91356074 TTGGGCTAAC
* * * *
91356084 ATGTAATCGTGGCATATGCACTTAGCGCCACTTTTCAAATTAACATGTATAACCGTGGCATATCC
1 ATGTAATCGTGGCATATGCACTTAGCACCACGTTACAAATCAACATGTATAACCGTGGCATATCC
* *
91356149 ACTTAGCACCAGGTTACATGCTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATA
66 ACTTAGCACCACGTTACA-GCTTAACCGTGGTATACCCACTTAGCACCACGTTAATGAATCAATA
91356214 T
130 T
* * * * *
91356215 ATGTAATCGTGGCATAT-CAACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATA
1 ATGTAATCGTGGCATATGC-ACTTAGCACCACGTTACA--AATCAACATGTATAACCGTGGCATA
91356279 TCCACTTAGCACCACGTTACA-CATATAACCGTGGTATACCCACTTAGCACCA
63 TCCACTTAGCACCACGTTACAGC-T-TAACCGTGGTATACCCACTTAGCACCA
91356331 TGTTTTTCCA
Statistics
Matches: 100, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
130 1 0.01
131 33 0.33
132 1 0.01
133 65 0.65
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (130 bp):
ATGTAATCGTGGCATATGCACTTAGCACCACGTTACAAATCAACATGTATAACCGTGGCATATCC
ACTTAGCACCACGTTACAGCTTAACCGTGGTATACCCACTTAGCACCACGTTAATGAATCAATAT
Found at i:91359683 original size:25 final size:24
Alignment explanation
Indices: 91359655--91359761 Score: 74
Period size: 25 Copynumber: 4.4 Consensus size: 24
91359645 AGCTCTTTCA
91359655 AGCCATATAACAGGAAGCTCATGTG
1 AGCCATATAAC-GGAAGCTCATGTG
* * **
91359680 AGCCATGTAACGAGAAGCTTATCCG
1 AGCCATATAACG-GAAGCTCATGTG
* ** * **
91359705 GGCTGTATAACAAGAAGCTCATAAG
1 AGCCATATAAC-GGAAGCTCATGTG
*
91359730 AGCCATAT-TCGGAAGCTCATGTG
1 AGCCATATAACGGAAGCTCATGTG
91359753 AGCCA-ATAA
1 AGCCATATAA
91359762 TGGGTAGCTC
Statistics
Matches: 59, Mismatches: 20, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
22 2 0.03
23 15 0.25
24 2 0.03
25 40 0.68
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (24 bp):
AGCCATATAACGGAAGCTCATGTG
Found at i:91359779 original size:24 final size:25
Alignment explanation
Indices: 91359752--91359800 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
91359742 AAGCTCATGT
* *
91359752 GAGCCAATAAT-GGGTAGCTCCGAA
1 GAGCCAATAATCAGGAAGCTCCGAA
*
91359776 GAGCCATTAATCAGGAAGCTCCGAA
1 GAGCCAATAATCAGGAAGCTCCGAA
91359801 TAGCTATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.16
Consensus pattern (25 bp):
GAGCCAATAATCAGGAAGCTCCGAA
Found at i:91360376 original size:21 final size:21
Alignment explanation
Indices: 91360352--91360393 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
91360342 TAAATTTAAC
*
91360352 TCAATTTAATACAATTCATAT
1 TCAATTAAATACAATTCATAT
*
91360373 TCAATTAAATTCAATTCATAT
1 TCAATTAAATACAATTCATAT
91360394 CTTAGGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (21 bp):
TCAATTAAATACAATTCATAT
Found at i:91364635 original size:40 final size:40
Alignment explanation
Indices: 91364568--91364719 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
91364558 AAATTGAATG
* * *
91364568 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCAAAGGCAATTGTGCTGGAAATT
* * * * ***
91364608 ATATCCGGGTTAAGACCCGAAGGCAATTGGGCTAGAGGCT
1 ATATCCGGGCTAAGACCCAAAGGCAATTGTGCTGGAAATT
**
91364648 ATATCCGGGCTAAGACCCAAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCAAAGGCAATT-GTGCTG-GAAATT
* * *
91364688 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCAAAGGCAATTGTGC
91364720 ACATGATTAT
Statistics
Matches: 88, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
39 3 0.03
40 83 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCAAAGGCAATTGTGCTGGAAATT
Found at i:91364733 original size:40 final size:40
Alignment explanation
Indices: 91364605--91364735 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 40
91364595 TATGCTGGAA
* * * *
91364605 ATTATATCCGGGTTAAGACCCGAAGGCAATTGGGCTAGA-G
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATG
** * * * *
91364645 GCTATATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATG
*
91364685 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATG
91364725 ATTATATCCGG
1 ATTATATCCGG
91364736 TTATATTCTG
Statistics
Matches: 71, Mismatches: 18, Indels: 4
0.76 0.19 0.04
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATG
Found at i:91368784 original size:23 final size:25
Alignment explanation
Indices: 91368758--91368804 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
91368748 TATCATTCAT
*
91368758 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
91368781 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
91368805 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:91369126 original size:46 final size:46
Alignment explanation
Indices: 91369065--91369413 Score: 446
Period size: 46 Copynumber: 8.0 Consensus size: 46
91369055 TTTGACGTGA
* * * * *
91369065 TGCCAT-GTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
91369110 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
91369156 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91369202 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91369248 TGCCATGGTATCTTTCAACCATGGTCTT----A---CATA-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91369286 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91369332 TGCCATGGTATCTTTCAACCATGGTCTTACAC----C----CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
91369370 TGCTATGGTATCTTTCAACCATGGTATTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
91369414 AGAGCAAACT
Statistics
Matches: 272, Mismatches: 14, Indels: 35
0.85 0.04 0.11
Matches are distributed among these distances:
38 68 0.25
39 4 0.01
42 4 0.01
45 14 0.05
46 182 0.67
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:91369180 original size:92 final size:88
Alignment explanation
Indices: 91369065--91369413 Score: 455
Period size: 84 Copynumber: 4.0 Consensus size: 88
91369055 TTTGACGTGA
* * *
91369065 TGCCAT-GTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CA--TTCT-TCAGGTTGCCATGGTATCTTTCAAC
** * * *
91369129 CATGGTCTTATTCTTTTCATGTCACGT
62 CATGGTCTTACACATTTCATATCAGGT
91369156 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CAT-TC-T-TCAGGTTGCCATGGTATCTTTCAAC
91369221 CATGGTCTTACACATTTCATATCAGGT
62 CATGGTCTTACACATTTCATATCAGGT
*
91369248 TGCCATGGTATCTTTCAACCATGGTCTTA-CA---TACAGGTTGCCATGGTATCTTTCAACCATG
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTTCAGGTTGCCATGGTATCTTTCAACCATG
91369309 GTCTTACACATTTCATATCAGGT
66 GTCTTACACATTTCATATCAGGT
* *
91369332 TGCCATGGTATCTTTCAACCATGGTCTTA-CA--C-CCAGGTTGCTATGGTATCTTTCAACCATG
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTTCAGGTTGCCATGGTATCTTTCAACCATG
*
91369393 GTATTACACATTTCATATCAG
66 GTCTTACACATTTCATATCAG
91369414 AGAGCAAACT
Statistics
Matches: 240, Mismatches: 14, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
84 129 0.54
85 1 0.00
90 3 0.01
91 8 0.03
92 99 0.41
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (88 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTTCAGGTTGCCATGGTATCTTTCAACCATG
GTCTTACACATTTCATATCAGGT
Found at i:91369294 original size:38 final size:39
Alignment explanation
Indices: 91369238--91369400 Score: 213
Period size: 38 Copynumber: 4.1 Consensus size: 39
91369228 TTACACATTT
91369238 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
91369277 CATA-CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT----A
91369319 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 ---CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * *
91369361 CA-CCCAGGTTGCTATGGTATCTTTCAACCATGGTATTA
1 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
91369399 CA
1 CA
91369401 CATTTCATAT
Statistics
Matches: 112, Mismatches: 4, Indels: 17
0.84 0.03 0.13
Matches are distributed among these distances:
38 67 0.60
39 6 0.05
42 2 0.02
45 4 0.04
46 33 0.29
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (39 bp):
CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
Found at i:91379936 original size:47 final size:47
Alignment explanation
Indices: 91379885--91380125 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
91379875 TTAGGATTTT
91379885 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
91379932 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91379979 ATGTGGTGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
91380026 ATATGATGAATGTGAGCATCCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
91380073 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
91380120 ATGTGA
1 ATGTGA
91380126 AATATATATA
Statistics
Matches: 174, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:91379987 original size:25 final size:25
Alignment explanation
Indices: 91379912--91379987 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
91379902 ATGCATATAT
91379912 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
91379937 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
91379959 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
91379984 GTGA
1 GTGA
91379988 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:91379989 original size:94 final size:94
Alignment explanation
Indices: 91379885--91380125 Score: 419
Period size: 94 Copynumber: 2.6 Consensus size: 94
91379875 TTAGGATTTT
*
91379885 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
91379950 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TCCATATGTGTGATAAGGCCGAATGGCCA
*
91379979 ATGTGGTGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATATGATGAATGTGAGCA
1 ATGTGGTGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
91380044 TCCATATGTGTGATAAGGCCGAATGGCCA
66 TCCATATGTGTGATAAGGCCGAATGGCCA
* * * *
91380073 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCAATGTGA
1 ATGTGGTGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
91380126 AATATATATA
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 139 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGGTGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TCCATATGTGTGATAAGGCCGAATGGCCA
Found at i:91380378 original size:37 final size:37
Alignment explanation
Indices: 91380327--91380509 Score: 262
Period size: 37 Copynumber: 5.0 Consensus size: 37
91380317 AACTTGGAAA
91380327 TATGTTCCGGGTAAGACCCGATGACTACGTGTGGAGAG
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAG
*
91380365 TATGTCCGGGTAAGAACCGATGACTACGTGTGGAGA-
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAG
*
91380401 T-TGTCCGTGTAAGACCCGATGACTACGTGTGGAGAG
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAG
* *
91380437 TATGCCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAG
* * * * *
91380474 TTTGTCCGGGTAAGACCTGATAATTTCGTGTGGAGA
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGA
91380510 TTTCGTCTGA
Statistics
Matches: 131, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
35 32 0.24
36 2 0.02
37 93 0.71
38 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAG
Found at i:91380457 original size:72 final size:73
Alignment explanation
Indices: 91380332--91380509 Score: 277
Period size: 72 Copynumber: 2.4 Consensus size: 73
91380322 GGAAATATGT
*
91380332 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGAACCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGCCCGGGTAAGAACCGATGACTACGTGTG
91380397 GAGA-TTG
66 GAGATTTG
* *
91380404 TCCGTGTAAGACCCGATGACTACGTGTGGAGAGTATGCCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGCCCGGGTAAGAACCGATGACTACGTGTG
91380469 GAGATTTTG
66 GAGA-TTTG
* * * *
91380478 TCCGGGTAAGACCTGATAATTTCGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
91380510 TTTCGTCTGA
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
72 66 0.69
74 30 0.31
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (73 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGCCCGGGTAAGAACCGATGACTACGTGTG
GAGATTTG
Found at i:91386265 original size:32 final size:32
Alignment explanation
Indices: 91386229--91386308 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
91386219 CAATTGAATC
*
91386229 TTCGTACATACATGTACCATATTGTACCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
* *
91386261 TTCGTACATTCCTGTACCATATTGTTCCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
*
91386293 TTCGTAGATACCTGTA
1 TTCGTACATACCTGTA
91386309 TCATCTCGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (32 bp):
TTCGTACATACCTGTACCATATTGTACCAATT
Found at i:91386432 original size:28 final size:28
Alignment explanation
Indices: 91386401--91386527 Score: 119
Period size: 28 Copynumber: 4.5 Consensus size: 28
91386391 CCGATACCTT
* * *
91386401 GCACACTAAGTGTCGTTCTTGATGTTTC
1 GCACACTAAGTGCCATTCTCGATGTTTC
* * **
91386429 GCACACTAAGTGCCATCCTCGTTACTTC
1 GCACACTAAGTGCCATTCTCGATGTTTC
* *
91386457 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTCGATGTTTC
* * **
91386485 GCACACTAAGTGCCATCCCCGATACTTC
1 GCACACTAAGTGCCATTCTCGATGTTTC
**
91386513 GCACGTTAAGTGCCA
1 GCACACTAAGTGCCA
91386528 CATATAATTA
Statistics
Matches: 78, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 78 1.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCGATGTTTC
Found at i:91386443 original size:56 final size:56
Alignment explanation
Indices: 91386366--91386527 Score: 197
Period size: 56 Copynumber: 2.9 Consensus size: 56
91386356 TGAATATTCA
* * *
91386366 ATGTATCGCACACT-AGATGCCATACCCGATACCTT-GCACACTAAGTGTCGTTCTTG
1 ATGTATCGCACACTAAG-TGCCAT-CCCGATACCTTCGCACACTAAGTGCCATTCTGG
* *
91386422 ATGTTTCGCACACTAAGTGCCATCCTCGTTA-CTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCC-CGATACCTTCGCACACTAAGTGCCATTCTGG
**
91386478 ATGTATCGCACACTAAGTGCCATCCCCGATA-CTTCGCACGTTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCAT-CCCGATACCTTCGCACACTAAGTGCCA
91386528 CATATAATTA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
55 5 0.05
56 84 0.90
57 4 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCCGATACCTTCGCACACTAAGTGCCATTCTGG
Found at i:91398102 original size:18 final size:18
Alignment explanation
Indices: 91398068--91398102 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91398058 GTTTATGGCT
* *
91398068 CCAAAAACACTTTTAGCC
1 CCAAAAACACATATAGCC
91398086 CCAAAAACACATATAGC
1 CCAAAAACACATATAGC
91398103 TTTGATTGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.31, G:0.06, T:0.17
Consensus pattern (18 bp):
CCAAAAACACATATAGCC
Found at i:91406885 original size:29 final size:29
Alignment explanation
Indices: 91406853--91406959 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
91406843 ATACCCTCCG
**
91406853 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* * * *
91406882 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* *
91406911 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCGTATTTTTCC
*
91406940 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
91406960 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATTTTTCC
Found at i:91414812 original size:29 final size:29
Alignment explanation
Indices: 91414780--91414886 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
91414770 ATACCCTCCG
**
91414780 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* * * *
91414809 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* *
91414838 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCGTATTTTTCC
*
91414867 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
91414887 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATTTTTCC
Found at i:91418449 original size:31 final size:31
Alignment explanation
Indices: 91418411--91418475 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
91418401 GCTTACACTG
*
91418411 TTTCCTTTATGTGAAACTAGACTCATTAAGC
1 TTTCCTTTAGGTGAAACTAGACTCATTAAGC
91418442 TTTCCTTTAGGTGAAACTAGACTCATTAAGC
1 TTTCCTTTAGGTGAAACTAGACTCATTAAGC
91418473 TTT
1 TTT
91418476 AATTTCATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCCTTTAGGTGAAACTAGACTCATTAAGC
Found at i:91422227 original size:69 final size:69
Alignment explanation
Indices: 91422111--91422252 Score: 239
Period size: 69 Copynumber: 2.1 Consensus size: 69
91422101 AGGGCTCACA
*
91422111 ATCACTTTAAGAAATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAGAAGTAAAGTTA
1 ATCACTTTAAGAAATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAAAAGTAAAGTTA
91422176 TTGG
66 TTGG
* * * *
91422180 ATCATTTTAAGAGATGGATTACTAAATGTAGTAGCTGCTGTACTATTTAAATAAAAGTAGAGTTA
1 ATCACTTTAAGAAATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAAAAGTAAAGTTA
91422245 TTGG
66 TTGG
91422249 ATCA
1 ATCA
91422253 ACATCAACAG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (69 bp):
ATCACTTTAAGAAATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAAAAGTAAAGTTA
TTGG
Found at i:91431987 original size:14 final size:14
Alignment explanation
Indices: 91431957--91431986 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
91431947 TTCATGGATC
91431957 AATAGAAAATAAAA
1 AATAGAAAATAAAA
91431971 AATATGAAAATAAAA
1 AATA-GAAAATAAAA
91431986 A
1 A
91431987 TTTATAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AATAGAAAATAAAA
Found at i:91438658 original size:35 final size:36
Alignment explanation
Indices: 91438609--91438810 Score: 209
Period size: 35 Copynumber: 5.7 Consensus size: 36
91438599 ACGACGTTTA
*
91438609 AAAAAGGTTAGGATAGACCCT-TCTAAGGCAACCTT
1 AAAAAGGTTGGGATAGACCCTGTCTAAGGCAACCTT
* * *
91438644 AAAAACGTTGGGATATACCC-GTCTAAGACAACCTT
1 AAAAAGGTTGGGATAGACCCTGTCTAAGGCAACCTT
* * **
91438679 AAAAATGTTGGGATAGACCTTGTCTAAGGC--TTTT
1 AAAAAGGTTGGGATAGACCCTGTCTAAGGCAACCTT
* *
91438713 AAAAAAGGTTGGGATAGA-GCTGTCTAAGG-AACCCCT
1 -AAAAAGGTTGGGATAGACCCTGTCTAAGGCAA-CCTT
* * *
91438749 AAAAAGGTTGGGACAGACCTTGTCTAAGGCAAACTT
1 AAAAAGGTTGGGATAGACCCTGTCTAAGGCAACCTT
* *
91438785 AAATAGGTTGGGATAGACCTTGTCTA
1 AAAAAGGTTGGGATAGACCCTGTCTA
91438811 TGTCAACACC
Statistics
Matches: 136, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
34 11 0.08
35 79 0.58
36 44 0.32
37 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (36 bp):
AAAAAGGTTGGGATAGACCCTGTCTAAGGCAACCTT
Found at i:91439467 original size:140 final size:139
Alignment explanation
Indices: 91439216--91439508 Score: 383
Period size: 140 Copynumber: 2.1 Consensus size: 139
91439206 TTTTGTGCTG
* * * * *
91439216 GCCCATAAGTGTCAGCATAGTATTGGATAAGCTGACTCTTATTTAAGCGTTGCCTTAGGCATGTA
1 GCCCAAAAGTGTCAGCATAGTATTGGAAAAGCCGACTCTTATTTAAGCGTTGCCTTACGCATGCA
* * *
91439281 TATCCCAATCCTTATACAACGAGTTGGCCAAAGCGTATGTCAGCAAGTCTATCCCAACACTAAGG
66 TATCCCAAGCCTTATACAAAGAGTTGGCCAAAGCGTATATCAGCAAGTCTATCCCAACACTAA-G
**
91439346 AAAA-TGTTG
130 AAAAGTGTCA
* * * * *
91439355 GCCTAAAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGTGTTGCCTTACGTATGC
1 GCCCAAAAGTGTCAGCATAGTATTGGA-AAAGCCGACTCTTATTTAAGCGTTGCCTTACGCATGC
* * *
91439420 ATATCCC-AGCCTTTATACAAAGAGTTGGCCAAAGCGTATATCGGCAAGTCTATCCTAACACTTA
65 ATATCCCAAGCC-TTATACAAAGAGTTGGCCAAAGCGTATATCAGCAAGTCTATCCCAACACTAA
91439484 GAAAAGTGTCA
129 GAAAAGTGTCA
91439495 GCCCAAAAGTGTCA
1 GCCCAAAAGTGTCA
91439509 TCTTAGGACT
Statistics
Matches: 131, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
139 31 0.24
140 100 0.76
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (139 bp):
GCCCAAAAGTGTCAGCATAGTATTGGAAAAGCCGACTCTTATTTAAGCGTTGCCTTACGCATGCA
TATCCCAAGCCTTATACAAAGAGTTGGCCAAAGCGTATATCAGCAAGTCTATCCCAACACTAAGA
AAAGTGTCA
Found at i:91442309 original size:29 final size:27
Alignment explanation
Indices: 91442276--91442338 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
91442266 AATCCTCCAT
91442276 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACACCAGTAT-ATCATAGCCTCCCA
* *
91442303 AACACACCGGTATATCATATCCTCCCA
1 AACACACCAGTATATCATAGCCTCCCA
91442330 AACACACCA
1 AACACACCA
91442339 ATAAGGCATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.40, C:0.37, G:0.06, T:0.17
Consensus pattern (27 bp):
AACACACCAGTATATCATAGCCTCCCA
Found at i:91442877 original size:17 final size:18
Alignment explanation
Indices: 91442847--91442880 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91442837 AATTTTTATT
*
91442847 CAATTTATTCCCTAATTC
1 CAATTTAATCCCTAATTC
91442865 CAATTTAAT-CCTAATT
1 CAATTTAATCCCTAATT
91442881 AACTCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (18 bp):
CAATTTAATCCCTAATTC
Found at i:91443756 original size:3 final size:3
Alignment explanation
Indices: 91443748--91443780 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
91443738 TTTTAAATCA
91443748 AAT AAT AAT AAT AAT AAT AAT AAT AATT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AA
91443781 AATCTAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:91456702 original size:38 final size:38
Alignment explanation
Indices: 91456651--91456966 Score: 479
Period size: 38 Copynumber: 8.3 Consensus size: 38
91456641 ATATTCGATG
*
91456651 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
91456689 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
91456727 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
91456765 TATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
91456803 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
91456841 TATATCCGGGCTTAAAGACCCGCAGCCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
91456881 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
91456919 TATATCTGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
91456957 TATATTCGGG
1 TATATCCGGG
91456967 CCTTCGTGCC
Statistics
Matches: 253, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
38 214 0.85
39 10 0.04
40 29 0.11
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:91456915 original size:116 final size:115
Alignment explanation
Indices: 91456652--91456967 Score: 499
Period size: 116 Copynumber: 2.7 Consensus size: 115
91456642 TATTCGATGT
*
91456652 ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTC
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTC
* * * *
91456717 GTGCTGGTATTATATCCAGG-TTAAATCCCGCAGGCTTCGTGCTGGTAAT
66 GTGCTGGTATTATATCCGGGCTTAAAACCCGCAGCCTTCGTGCTGGTAAA
* * *
91456766 ATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTC
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTC
91456831 GTGCTGGTATTATATCCGGGCTTAAAGACCCGCAGCCTTCGTGCTGGTAAA
66 GTGCTGGTATTATATCCGGGCTTAAA-ACCCGCAGCCTTCGTGCTGGTAAA
* * * *
91456882 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTGGGATAAATCCCGCAGGCCTA
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTC
*
91456947 GTGCTGGTATTATATTCGGGC
66 GTGCTGGTATTATATCCGGGC
91456968 CTTCGTGCCT
Statistics
Matches: 184, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
114 80 0.43
115 5 0.03
116 99 0.54
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (115 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTC
GTGCTGGTATTATATCCGGGCTTAAAACCCGCAGCCTTCGTGCTGGTAAA
Found at i:91456934 original size:154 final size:152
Alignment explanation
Indices: 91456651--91456966 Score: 499
Period size: 154 Copynumber: 2.1 Consensus size: 152
91456641 ATATTCGATG
* * *
91456651 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAACCCGCAGCCTT
** *
91456716 CGTGCTGGTATTATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGGTTAAAT
66 CGTGCTGGTAAAATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGGATAAAT
*
91456781 CCCGCAGGCTTCA-TGCTGGTAA
131 CCCGCAGGCCT-AGTGCTGGTAA
91456803 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACCCGCAGCC
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG-TTAAA-ACCCGCAGCC
* *
91456868 TTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTGGGATAA
64 TTCGTGCTGGTAAAATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGGATAA
*
91456933 ATCCCGCAGGCCTAGTGCTGGTAT
129 ATCCCGCAGGCCTAGTGCTGGTAA
*
91456957 TATATTCGGG
1 TATATCCGGG
91456967 CCTTCGTGCC
Statistics
Matches: 150, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
152 47 0.31
153 6 0.04
154 97 0.65
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (152 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAACCCGCAGCCTT
CGTGCTGGTAAAATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGGATAAAT
CCCGCAGGCCTAGTGCTGGTAA
Found at i:91457036 original size:43 final size:43
Alignment explanation
Indices: 91456959--91457040 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
91456949 GCTGGTATTA
* * **
91456959 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAAGCGTAATGCCGGTGATGTG
*
91457002 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCAGGCCTTCGTGCCTAGCAAGCGTAATGCCGGTGA
91457041 AATGATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.28
Consensus pattern (43 bp):
TATTCAGGCCTTCGTGCCTAGCAAGCGTAATGCCGGTGATGTG
Found at i:91460653 original size:40 final size:40
Alignment explanation
Indices: 91460603--91460856 Score: 214
Period size: 40 Copynumber: 6.3 Consensus size: 40
91460593 CTCGCACAAG
* *
91460603 GCCTTCGGGTCTTAGCCCGGATATGGTC-ACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAAT
* *
91460643 GCCTTTGGGTCTTAGCCCGGATATAGCAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAAT
* * * * *
91460683 TCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACCAAT
1 GCCTTCGGGTCTTAGCCCGGATA-TAGCAACTAGCACAAAT
* * * * *
91460723 GCCTTCGGGACTTAGCCCAGA-ATTAGTAACTCGCACCAAT
1 GCCTTCGGGTCTTAGCCCGGATA-TAGCAACTAGCACAAAT
* * *
91460763 GCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATA-TAGCAACTAGCACAAAT
* * *
91460803 GCCTTCAGGACTTAGCCCGGA-ATTAATC-ACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATA-T-AGCAACTAGCACAAAT
* *
91460843 GTCTTCGGGACTTA
1 GCCTTCGGGTCTTA
91460857 ACCACGTTAG
Statistics
Matches: 192, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.01
40 189 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAAT
Found at i:91460724 original size:80 final size:80
Alignment explanation
Indices: 91460604--91460856 Score: 307
Period size: 80 Copynumber: 3.2 Consensus size: 80
91460594 TCGCACAAGG
* * * * * * *
91460604 CCTTCGGGTCTTAGCCCGG-ATATGGTCACTAGCATAAATGCCTTTGGGTCTTAGCCCGG-ATAT
1 CCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-T
91460667 AGCAACTCGCACAAATT
64 AGCAACTCGCACAAATT
* *
91460684 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCAGAATTAG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
* * *
91460749 TAACTCGCACCAATG
66 CAACTCGCACAAATT
*
91460764 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAA
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATT-A
* *
91460829 TC-ACTAGCACAAATGT
65 GCAACTCGCACAAAT-T
91460845 -CTTCGGGACTTA
1 CCTTCGGGACTTA
91460857 ACCACGTTAG
Statistics
Matches: 149, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
80 144 0.97
81 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
CAACTCGCACAAATT
Found at i:91460778 original size:120 final size:120
Alignment explanation
Indices: 91460592--91460856 Score: 329
Period size: 120 Copynumber: 2.2 Consensus size: 120
91460582 GAATATAACC
* * * * * * * *
91460592 ACTCGCA-CAAGGCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTTGGGTCTT
1 ACTCGCACCAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTT
* * *
91460656 AGCCCGG-ATATAGCAACTCGCACAAATTCCTTCGGGACTTAGCCCGGAATTAGTA
66 AGCCCGGAAT-TAGCAACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAATA
* *
91460711 ACTCGCACCAATGCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACCAATGCCTTCGGGACT
1 ACTCGCACCAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTAGCACAAATGCCTTCGGGACT
* *
91460775 TAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAATC
65 TAGCCCGGAATTAGCAACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAATA
* * *
91460831 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACCAATGCCTTCGGGACTTA
91460857 ACCACGTTAG
Statistics
Matches: 125, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
119 7 0.06
120 113 0.90
121 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
ACTCGCACCAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTT
AGCCCGGAATTAGCAACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAATA
Found at i:91469020 original size:40 final size:40
Alignment explanation
Indices: 91468962--91469187 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
91468952 CGGATATAAC
* * *
91468962 CACTCGCAC-AAGGCCTTCGGGTCTTAGCCC-GAATATGGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* * *
91469001 CACTAGCATAAATGCCTTCGGGTCTTAGCCCGG-ATATAG-
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
91469040 CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 C-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * * *
91469081 AACTCGCACCAATGCCTTCCGTACTTAGCCCGGAATTAGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
91469121 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAAT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
91469161 CACTAGCACAAATGTCTTCGGGACTTA
1 CACTCGCACAAATGCCTTCGGGACTTA
91469188 ACCCCGTTAG
Statistics
Matches: 164, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 8 0.05
40 153 0.93
41 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
Found at i:91469095 original size:80 final size:80
Alignment explanation
Indices: 91468938--91469187 Score: 310
Period size: 80 Copynumber: 3.1 Consensus size: 80
91468928 ACCCAAGTAT
* * * * * *
91468938 CTTCGGGAATTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCC-GAATATGG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
91469000 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
*
91469016 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
91469081 AACTCGCACCAATGC
66 CACTAGCACAAATGC
* * * *
91469096 CTTCCGTACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
91469160 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
91469176 CTTCGGGACTTA
1 CTTCGGGACTTA
91469188 ACCCCGTTAG
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 11 0.08
79 19 0.13
80 112 0.77
81 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:91480950 original size:2 final size:2
Alignment explanation
Indices: 91480943--91480970 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
91480933 CTTAACCGGT
91480943 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91480971 AATGTATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91486090 original size:29 final size:27
Alignment explanation
Indices: 91486056--91486158 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
91486046 TACTCAATCA
*
91486056 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
91486085 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
91486114 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
91486143 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
91486159 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:91495936 original size:21 final size:21
Alignment explanation
Indices: 91495910--91495965 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
91495900 GAAACATGGC
91495910 ACACGCCCGTGTGGAAGGGCA
1 ACACGCCCGTGTGGAAGGGCA
*
91495931 ATACGCCCGTGTGGAAGGGCA
1 ACACGCCCGTGTGGAAGGGCA
91495952 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
91495966 TCATTATAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.21, C:0.29, G:0.38, T:0.12
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGGCA
Found at i:91497352 original size:48 final size:48
Alignment explanation
Indices: 91497139--91497410 Score: 220
Period size: 48 Copynumber: 5.7 Consensus size: 48
91497129 TAGGGTATGA
* * * *
91497139 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAT-ACG
* * * * * *
91497188 T--TGATGCCATGTCCCAGACATGGTCTTACATTGAC-TATCAAAATTG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATA-CG
* * * * * * * *
91497234 AGACCGACGCCATGTCCCAAATATGGTCTTACACTAGCTCTCA-CATGTCCG
1 TG-CCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATC-TATACG
* *
91497285 TACCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACG
*
91497333 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGACACATC--T-CG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACG
*
91497378 TAGCCGATG-CATGTCCTAGACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
91497411 AGCTCTCATT
Statistics
Matches: 178, Mismatches: 35, Indels: 25
0.75 0.15 0.11
Matches are distributed among these distances:
44 9 0.05
45 17 0.10
46 13 0.07
47 31 0.17
48 45 0.25
49 29 0.16
50 30 0.17
51 3 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACG
Found at i:91497446 original size:92 final size:93
Alignment explanation
Indices: 91497283--91497507 Score: 228
Period size: 92 Copynumber: 2.4 Consensus size: 93
91497273 CTCACATGTC
* * * *
91497283 CGTA-CCGATGCCATGTCCCAGACATGGTCTTACACT-GACACCTC-TAT-ACGTGCCGATGCCA
1 CGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-C-TCTCATTTCA-ATGCCAATGCCA
* *
91497344 TGTCCCAGACATGGTCTTACATTGACACATC-T-
61 TGGCCCAGACATGGTCTTACACTGACAC-TCATA
*
91497376 CGTAGCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATTTCAATGCCAATGCCATGGCC
1 CGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATTTCAATGCCAATGCCATGGCC
* * *
91497441 TAGACATGGTCTTACACTGGCTCTCATAA
66 CAGACATGGTCTTACACTGACACTCAT-A
* * *
91497470 TGTAGCCGATGCATGTCCCAGGCATGTCTTATACTAGC
1 CGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGC
91497508 ACACAATAAC
Statistics
Matches: 111, Mismatches: 14, Indels: 13
0.80 0.10 0.09
Matches are distributed among these distances:
91 5 0.05
92 47 0.42
93 19 0.17
94 40 0.36
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
CGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATTTCAATGCCAATGCCATGGCC
CAGACATGGTCTTACACTGACACTCATA
Found at i:91497480 original size:140 final size:144
Alignment explanation
Indices: 91497138--91497500 Score: 397
Period size: 140 Copynumber: 2.5 Consensus size: 144
91497128 ATAGGGTATG
*
91497138 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT--TGATGCCATGTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AAGTGCCGATGCCATGTC
* *
91497201 CCAGACATGGTCTTACATTGACTATCAAAATTGAGACCGACGCCATGTCCCAAATATGGTCTTAC
63 CCAGACATGGTCTTACATTGACTATCAAAATCGAGACCGACGCCATGTCCCAAACATGGTCTTAC
*
91497266 ACTAGCTCTCACATGTCC
128 ACTAGCTCT-ACATGTCA
* * * * *
91497284 GTACCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGCCGATGCCATGTCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTC-ATAAGTGCCGATGCCATGTCC
** * * *
91497349 CAGACATGGTCTTACATTGAC-A-C-ATCTCGTAG-CCGATG-CATGTCCTAGACAT-GTCTTAC
64 CAGACATGGTCTTACATTGACTATCAAAATCG-AGACCGACGCCATGTCCCAAACATGGTCTTAC
*
91497408 ACTAGCTCT-CATTTCA
128 ACTAGCTCTACATGTCA
* * *
91497424 ATGCCAATGCCATGGCCTAGACATGGTCTTACACTGGCTCTCATAATGTAGCCGATG-CATGTCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-GT-GCCGATGCCATGTCC
*
91497488 CAGGCAT-GTCTTA
64 CAGACATGGTCTTA
91497501 TACTAGCACA
Statistics
Matches: 186, Mismatches: 24, Indels: 22
0.80 0.10 0.09
Matches are distributed among these distances:
138 9 0.05
139 18 0.10
140 44 0.24
142 16 0.09
143 11 0.06
144 8 0.04
145 7 0.04
146 39 0.21
147 34 0.18
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (144 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGTGCCGATGCCATGTCCCA
GACATGGTCTTACATTGACTATCAAAATCGAGACCGACGCCATGTCCCAAACATGGTCTTACACT
AGCTCTACATGTCA
Found at i:91504894 original size:21 final size:20
Alignment explanation
Indices: 91504869--91504922 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
91504859 AATTGAAAAG
91504869 TTTTTATTTAATTAAATTTA
1 TTTTTATTTAATTAAATTTA
* * *
91504889 CTTTTTGTGTAATTTAATTTA
1 -TTTTTATTTAATTAAATTTA
*
91504910 ATTTTATTTAATT
1 TTTTTATTTAATT
91504923 CTTTTAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (20 bp):
TTTTTATTTAATTAAATTTA
Found at i:91506208 original size:21 final size:20
Alignment explanation
Indices: 91506171--91506209 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
91506161 ATACTTCTTA
*
91506171 TAAAATGAGGAAAAGAAACC
1 TAAAATAAGGAAAAGAAACC
*
91506191 TAAAATAATGGAATAGAAA
1 TAAAATAA-GGAAAAGAAA
91506210 AACTGATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.62, C:0.05, G:0.18, T:0.15
Consensus pattern (20 bp):
TAAAATAAGGAAAAGAAACC
Found at i:91508631 original size:18 final size:18
Alignment explanation
Indices: 91508608--91508644 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
91508598 TTATACCAGG
*
91508608 TGTGTATCCTAGCCCTTA
1 TGTGTATCCTAACCCTTA
*
91508626 TGTGTATCTTAACCCTTA
1 TGTGTATCCTAACCCTTA
91508644 T
1 T
91508645 ATGTTTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (18 bp):
TGTGTATCCTAACCCTTA
Found at i:91508801 original size:18 final size:18
Alignment explanation
Indices: 91508778--91508824 Score: 78
Period size: 18 Copynumber: 2.6 Consensus size: 18
91508768 CGTCAGGGAG
91508778 CCCATC-TCATTTCCAATC
1 CCCATCGTC-TTTCCAATC
91508796 CCCATCGTCTTTCCAATC
1 CCCATCGTCTTTCCAATC
91508814 CCCATCGTCTT
1 CCCATCGTCTT
91508825 ACGGGATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.17, C:0.45, G:0.04, T:0.34
Consensus pattern (18 bp):
CCCATCGTCTTTCCAATC
Found at i:91510366 original size:98 final size:98
Alignment explanation
Indices: 91510191--91510399 Score: 229
Period size: 98 Copynumber: 2.1 Consensus size: 98
91510181 TTCTCAAAAT
* ** * * * * *
91510191 TATTTTTTCAGAAATTGTTGTAGAAAAATAGTGTCCAGATAGAAGCTTTTTTTAGTAATTTTGCT
1 TATTTTTTCAGAAACTACTGTAGAAAAAGAGTATCCAGATAGAAGCATCTTTCAGTAATTTTGCT
* * ** *
91510256 AACAATACATCCTGTTTGAAGTGTTTTTGACCC
66 AACAATACATCCTGCTTAAAGCATTTTTGACAC
* * * *
91510289 TATTTTTTCAGAAACTACTGTAGAAAAAGAGTATCCAGTTGGGAGCATCTTTCAGTACTTTTGCT
1 TATTTTTTCAGAAACTACTGTAGAAAAAGAGTATCCAGATAGAAGCATCTTTCAGTAATTTTGCT
* * **
91510354 GACAGTGTATCCTGCTTAAAGCATTTTTGACAC
66 AACAATACATCCTGCTTAAAGCATTTTTGACAC
91510387 TATTTTTTCAGAA
1 TATTTTTTCAGAA
91510400 CCATCTTTTT
Statistics
Matches: 90, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (98 bp):
TATTTTTTCAGAAACTACTGTAGAAAAAGAGTATCCAGATAGAAGCATCTTTCAGTAATTTTGCT
AACAATACATCCTGCTTAAAGCATTTTTGACAC
Found at i:91510434 original size:15 final size:15
Alignment explanation
Indices: 91510385--91510434 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
91510375 CATTTTTGAC
91510385 ACTATTTTTTCAG-A
1 ACTATTTTTTCAGAA
*
91510399 ACCATCTTTTTCA-AA
1 ACTAT-TTTTTCAGAA
*
91510414 ATTATTTTTTCAGAA
1 ACTATTTTTTCAGAA
91510429 ACTATT
1 ACTATT
91510435 GTAGAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (15 bp):
ACTATTTTTTCAGAA
Found at i:91510515 original size:224 final size:224
Alignment explanation
Indices: 91510080--91510710 Score: 730
Period size: 224 Copynumber: 2.8 Consensus size: 224
91510070 AAGTAGGATG
* *
91510080 TACTGTAGAAAAAGAGCGTCCAGGTGGGAGCATTTTTCAGTACTTTTGCTGACAGTGCATCTTGC
1 TACTGTAGAAAAAGAGCATCCAGATGGGAGCATTTTTCAGTACTTTTGCTGACAGTGCATCTTGC
* * * *
91510145 TTGAAGCGTTTTTGACCCTATTTTTTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAATTGTT
66 TTGAAGCATTTTTGACACTATTTTTTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACTATT
* * * * * ***
91510210 GTAGAAAAATAGTGTCCAGAT-AGAAGCTTTTTTTAGTAATTTTGCTAACAATACATCCTGTTTG
131 GTAGAAAAATAGCGTTCAGATGAG-GGCTTTTTTTAGTACTTTTACTAACAATACATCCCACTTG
*
91510274 AAGTGTTTTTGACCCTATT-TTTTCAGAAAC
195 AAGTGTTTTTGACCCTATTATTGT-AGAAAC
* * * * *
91510304 TACTGTAGAAAAAGAGTATCCAGTTGGGAGCATCTTTCAGTACTTTTGCTGACAGTGTATCCTGC
1 TACTGTAGAAAAAGAGCATCCAGATGGGAGCATTTTTCAGTACTTTTGCTGACAGTGCATCTTGC
* * *
91510369 TTAAAGCATTTTTGACACTATTTTTTCAGAACCATCTTTTTCAAAATTATTTTTTCAGAAACTAT
66 TTGAAGCATTTTTGACACTATTTTTTCAAAACCATC-TTCTCAAAATTATTTTTTCAGAAACTAT
* * * *
91510434 TGTAGAAAAATAGCGTTTAGATGAGGGCTTTTTTTAGTACTTTTACTGACAGTGCATCCCACTTG
130 TGTAGAAAAATAGCGTTCAGATGAGGGCTTTTTTTAGTACTTTTACTAACAATACATCCCACTTG
*
91510499 AAGT-TTTTTTACCCTATTATTGTAGAAAC
195 AAGTGTTTTTGACCCTATTATTGTAGAAAC
* * ** * *
91510528 TACTGTAAAAAAAATAAAAAAGAACATTTAGATGGGAGCATTTTTTAGTATTTTTGCTGACAGTG
1 TACTGT-------A-GAAAAAGAGCATCCAGATGGGAGCATTTTTCAGTACTTTTGCTGACAGTG
* * *
91510593 CATCTTGCTTGAAGCATTTTTTACATTATTTTTTTTCATAACCATCTTCTCAAAATTATTTTTTC
58 CATCTTGCTTGAAGCATTTTTGACACTA--TTTTTTCAAAACCATCTTCTCAAAATTATTTTTTC
* * * * *
91510658 AAAAACTACTGTAGAAAAAGAACGTTCAGATG-GGAGCTTTTTTCAGTACTTTT
121 AGAAACTATTGTAGAAAAATAGCGTTCAGATGAGG-GCTTTTTTTAGTACTTTT
91510711 GTTGAAAGTG
Statistics
Matches: 344, Mismatches: 49, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
224 116 0.34
225 82 0.24
226 2 0.01
231 1 0.00
232 66 0.19
233 62 0.18
234 15 0.04
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (224 bp):
TACTGTAGAAAAAGAGCATCCAGATGGGAGCATTTTTCAGTACTTTTGCTGACAGTGCATCTTGC
TTGAAGCATTTTTGACACTATTTTTTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACTATT
GTAGAAAAATAGCGTTCAGATGAGGGCTTTTTTTAGTACTTTTACTAACAATACATCCCACTTGA
AGTGTTTTTGACCCTATTATTGTAGAAAC
Found at i:91510691 original size:128 final size:126
Alignment explanation
Indices: 91510544--91510964 Score: 475
Period size: 126 Copynumber: 3.4 Consensus size: 126
91510534 AAAAAAAATA
* * *
91510544 AAAAAGAACATTTAGATGGGAGCATTTTTT-AGTATTTTTGCTGACAGTGCATCTTGCTTGAAGC
1 AAAAAGAACGTTCAGATGGGAGC-TTTTTTCAGTACTTTTGCTGACAGTGCATCTTGCTTGAAGC
* * *
91510608 ATTTTTTACATTATTTTTTTTCATAACCATCTTCTCAAAATTATTTTTTCAAAAACTACTGTAG
65 ATTTTTTAC-CTA-TTTTTTTCATAACCATCTTCTCAAAATTATTTTTTTAGAAACTACTGTAG
* * *
91510672 AAAAAGAACGTTCAGATGGGAGCTTTTTTCAGTACTTTTGTTGAAAGTGCATACTT-TTTGAAGC
1 AAAAAGAACGTTCAGATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCAT-CTTGCTTGAAGC
* * * * * *
91510736 ATTTTTTACCCAATATTTTT-AGAACTATCTTTTCAAAATTATTTTTTTAGAAACTACTATAG
65 ATTTTTTA-CCTATTTTTTTCATAACCATCTTCTCAAAATTATTTTTTTAGAAACTACTGTAG
* * * * * *
91510798 AAAAAGAGCG-TCTAGGTGGGAGTTTTTTTCAATACTTTTGCTGACAGTGCATCCTGCTTGAAAC
1 AAAAAGAACGTTC-AGATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCTTGCTTGAAGC
*
91510862 A-TTTTTACCCTA-TTTTTTCATAATCATCTTCTCAAAATTATTTTTTTAGAAACTACTGTAG
65 ATTTTTTA-CCTATTTTTTTCATAACCATCTTCTCAAAATTATTTTTTTAGAAACTACTGTAG
* * *
91510923 AAAAA-AA-GTCCA-ACTAGGAG-TTTTTTCAGTACTTTTTCTGAC
1 AAAAAGAACGTTCAGA-TGGGAGCTTTTTTCAGTACTTTTGCTGAC
91510965 TAAACAAAAA
Statistics
Matches: 248, Mismatches: 37, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
122 20 0.08
123 7 0.03
124 7 0.03
125 56 0.23
126 86 0.35
127 12 0.05
128 56 0.23
129 4 0.02
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (126 bp):
AAAAAGAACGTTCAGATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCTTGCTTGAAGCA
TTTTTTACCTATTTTTTTCATAACCATCTTCTCAAAATTATTTTTTTAGAAACTACTGTAG
Found at i:91511111 original size:28 final size:28
Alignment explanation
Indices: 91511080--91511158 Score: 72
Period size: 33 Copynumber: 2.6 Consensus size: 28
91511070 TAAAAATCTT
91511080 TAAACCTTAATTTATTTTTTAAAAAT-AA
1 TAAACCTTAATTTATTTTTT-AAAATCAA
*
91511108 TAAACCGTTATTAAATTTATTTTTTAAAATCCA
1 TAAACC----TT-AATTTATTTTTTAAAATCAA
91511141 TAAACAC-TAATTTATTTT
1 TAAAC-CTTAATTTATTTT
91511159 AACAAAAACC
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
28 16 0.37
29 1 0.02
32 7 0.16
33 18 0.42
34 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.47
Consensus pattern (28 bp):
TAAACCTTAATTTATTTTTTAAAATCAA
Done.