Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 292 of 438
Found at i:91514985 original size:16 final size:16
Alignment explanation
Indices: 91514964--91515011 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
91514954 TTTTAAAGAA
91514964 AATATATACATAAAAT
1 AATATATACATAAAAT
*
91514980 AATATA-ACAT-CAAT
1 AATATATACATAAAAT
*
91514994 AATATATACATAGAAT
1 AATATATACATAAAAT
91515010 AA
1 AA
91515012 GAAAATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 9 0.32
15 8 0.29
16 11 0.39
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.29
Consensus pattern (16 bp):
AATATATACATAAAAT
Found at i:91514994 original size:14 final size:15
Alignment explanation
Indices: 91514964--91515004 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
91514954 TTTTAAAGAA
*
91514964 AATATATACATAAAAT
1 AATATATACAT-CAAT
91514980 AATATA-ACATCAAT
1 AATATATACATCAAT
91514994 AATATATACAT
1 AATATATACAT
91515005 AGAATAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 9 0.39
15 8 0.35
16 6 0.26
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.32
Consensus pattern (15 bp):
AATATATACATCAAT
Found at i:91516672 original size:15 final size:15
Alignment explanation
Indices: 91516652--91516681 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91516642 TTCACTATTA
*
91516652 TATCTTTTGTATTTT
1 TATCTTTTATATTTT
91516667 TATCTTTTATATTTT
1 TATCTTTTATATTTT
91516682 GCATGCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (15 bp):
TATCTTTTATATTTT
Found at i:91521964 original size:40 final size:40
Alignment explanation
Indices: 91521905--91522110 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
91521895 CATTGGAATG
* * *
91521905 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
*
91521945 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
91521984 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* *
91522024 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCA-T
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
91522063 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
91522103 ATATCCGG
1 ATATCCGG
91522111 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
39 66 0.47
40 73 0.53
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:91522109 original size:79 final size:79
Alignment explanation
Indices: 91521909--91522114 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
91521899 GGAATGATAT
* * *
91521909 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGCATTCG
** *
91521974 TGCGAGTGTTATAT
66 TGCGAGTCATATAA
* * ** *
91521988 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGC-ATTC
91522052 GTGCGAGTCATATAA
65 GTGCGAGTCATATAA
** * * *
91522067 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATTATATCC-GGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAA
91522115 ATTCCGAAGG
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
78 6 0.06
79 97 0.92
80 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGCATTCG
TGCGAGTCATATAA
Found at i:91529948 original size:40 final size:40
Alignment explanation
Indices: 91529889--91530096 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
91529879 CATTGGAATG
* * *
91529889 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
91529929 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * * **
91529969 ATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
91530009 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
91530049 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
91530089 ATATCCGG
1 ATATCCGG
91530097 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 133 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:91537286 original size:47 final size:46
Alignment explanation
Indices: 91537131--91537481 Score: 161
Period size: 47 Copynumber: 7.5 Consensus size: 46
91537121 AGAGCCAATA
* * * *
91537131 TAAGACCATGTATGGGACATGGCATCGACATTGAGACGAGGGCTAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGACATAGAG-TGAGTGCTAGTG
* * * **
91537179 TAAG-GCGTGTCTGGGACATGCATCAGCCACAT-CA-TGA-TAGCCCGTG
1 TAAGACCATGTCTGGGACATGCATC-G--ACATAGAGTGAGT-GCTAGTG
**
91537225 TAAGACCACATCTGGGACATGGCATCGACATAGAGGTGAGTGCTAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGACATAGA-GTGAGTGCTAGTG
* * *
91537273 TAAGA-CATGTCTGGGACATGCATC-AGCCTCGA-TGAAGTTAGCCAGTG
1 TAAGACCATGTCTGGGACATGCATCGA-CATAGAGTG-AG-T-GCTAGTG
* * * **
91537320 TAAGA-CGTGTCTGAGACATGCATCGGC-TA-AGTTTCGTGCTAGTG
1 TAAGACCATGTCTGGGACATGCATCGACATAGAG-TGAGTGCTAGTG
* * * * **
91537364 TAAGA-CATGTCTGGGACATACATTAGCACGTATACA-CGAAAGCTAGTG
1 TAAGACCATGTCTGGGACATGCA-TCG-AC--ATAGAGTGAGTGCTAGTG
* * *
91537412 TAAGACCATGTCTGGGACATGGCATCGACCTCGA-TGGAGATAGCTAGCG
1 TAAGACCATGTCTGGGACAT-GCATCGACATAGAGT-GAG-T-GCTAGTG
*
91537461 CAAGACCATGTCTGGGACATG
1 TAAGACCATGTCTGGGACATG
91537482 GCAGCGGCAA
Statistics
Matches: 228, Mismatches: 47, Indels: 56
0.69 0.14 0.17
Matches are distributed among these distances:
44 27 0.12
45 11 0.05
46 32 0.14
47 69 0.30
48 38 0.17
49 48 0.21
50 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
TAAGACCATGTCTGGGACATGCATCGACATAGAGTGAGTGCTAGTG
Found at i:91537292 original size:94 final size:95
Alignment explanation
Indices: 91537131--91537481 Score: 338
Period size: 94 Copynumber: 3.7 Consensus size: 95
91537121 AGAGCCAATA
* * ** * * *
91537131 TAAGACCATGTATGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGGCGTGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGACATAGAGGTGAGTGCTAGTGTAAGACATGTCTGGGAC
* *
91537196 ATGCATCAGCCAC-ATCATGATAGCCCGTG
66 ATGCATCAGCCACGATCAAGATAGCCAGTG
**
91537225 TAAGACCACATCTGGGACATGGCATCGACATAGAGGTGAGTGCTAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGACATAGAGGTGAGTGCTAGTGTAAGACATGTCTGGGAC
* * *
91537290 ATGCATCAGCCTCGATGAAGTTAGCCAGTG
66 ATGCATCAGCCACGATCAAGATAGCCAGTG
* * * * **
91537320 TAAGA-CGTGTCTGAGACAT-GCATCGGC-TA-AGTTTCGTGCTAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGACATAGAGGTGAGTGCTAGTGTAAGACATGTCTGGGAC
* * * * *
91537381 ATACATTAG-CACGTATACACGAAAGCTAGTG
66 ATGCATCAGCCACG-AT-CAAGATAGCCAGTG
* * * * *
91537412 TAAGACCATGTCTGGGACATGGCATCGACCTCGATG-GAGATAGCTAGCGCAAGACCATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATCGACATAGAGGTGAG-T-GCTAGTGTAAGA-CATGTCTGG
91537476 GACATG
63 GACATG
91537482 GCAGCGGCAA
Statistics
Matches: 206, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
90 3 0.01
91 38 0.18
92 16 0.08
93 19 0.09
94 85 0.41
95 19 0.09
96 2 0.01
97 10 0.05
98 14 0.07
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (95 bp):
TAAGACCATGTCTGGGACATGGCATCGACATAGAGGTGAGTGCTAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCACGATCAAGATAGCCAGTG
Found at i:91545777 original size:53 final size:53
Alignment explanation
Indices: 91545696--91545846 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
91545686 CTTACACGGT
* *
91545696 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
91545751 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
91545804 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
91545847 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:91553293 original size:53 final size:53
Alignment explanation
Indices: 91553212--91553362 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
91553202 CTTACACGGT
* *
91553212 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
91553267 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
91553320 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
91553363 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:91563832 original size:71 final size:71
Alignment explanation
Indices: 91563711--91563844 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
91563701 GTTTTCCAAG
* * *
91563711 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
91563776 GTTTCA
66 GTTTCA
* * *
91563782 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
91563845 CTACTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:91563884 original size:160 final size:160
Alignment explanation
Indices: 91563620--91564159 Score: 994
Period size: 160 Copynumber: 3.4 Consensus size: 160
91563610 TTGTTTTTTC
91563620 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
91563685 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
91563750 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
*
91563780 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
91563845 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
91563910 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
*
91563940 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* * *
91564005 CTGCTTTTTAGTTCATG-TTTCCAAG-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
91564068 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
* * *
91564098 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAA
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
91564160 CTCCTATTAA
Statistics
Matches: 372, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
158 125 0.34
159 8 0.02
160 239 0.64
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (160 bp):
CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:91563992 original size:71 final size:71
Alignment explanation
Indices: 91563871--91564004 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
91563861 GTTTTCCAAG
* * *
91563871 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
91563936 GTTTCA
66 GTTTCA
* * *
91563942 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
91564005 CTGCTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:91564089 original size:87 final size:85
Alignment explanation
Indices: 91563934--91564091 Score: 253
Period size: 87 Copynumber: 1.8 Consensus size: 85
91563924 ATTTCAATTT
* * *
91563934 ATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
1 ATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
91563999 CAATTTCTGCTTTTTAGTTC
66 CAATTTCTGCTTTTTAGTTC
* *
91564019 ATGTTTCCAAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAAT
1 ATGTTT-CAA-AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAAT
91564084 TTCAATTT
64 TTCAATTT
91564092 ATGTTTCAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
85 6 0.09
86 3 0.05
87 57 0.86
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (85 bp):
ATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
CAATTTCTGCTTTTTAGTTC
Found at i:91564150 original size:71 final size:70
Alignment explanation
Indices: 91564030--91564281 Score: 254
Period size: 74 Copynumber: 3.5 Consensus size: 70
91564020 TGTTTCCAAG
* * * *
91564030 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATTTAT-
91564095 TTTCAA
65 TTTCAA
* * * *
91564101 AAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAACTCCTA
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAA-T-TTA
* *
91564166 TTAAATCTA
64 TT--TTCAA
* * * * *
91564175 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGCGGCATGCTAAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTC-AATT-TA
91564240 TTTTCAA
64 TTTTCAA
* * * *
91564247 AAGTTAATTCATATTGCGA-AAGGCGAGTTGAGCCT
1 AAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCT
91564282 TTAATTTTCG
Statistics
Matches: 150, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
71 54 0.36
72 33 0.22
73 3 0.02
74 58 0.39
75 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATTTATT
TTCAA
Found at i:91564433 original size:13 final size:13
Alignment explanation
Indices: 91564415--91564440 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91564405 TGAGTTGAGC
91564415 CTTTTAATTTCTA
1 CTTTTAATTTCTA
91564428 CTTTTAATTTCTA
1 CTTTTAATTTCTA
91564441 TGTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (13 bp):
CTTTTAATTTCTA
Found at i:91564449 original size:68 final size:68
Alignment explanation
Indices: 91564230--91564424 Score: 263
Period size: 67 Copynumber: 2.9 Consensus size: 68
91564220 TAAGGTATTT
* * * *
91564230 TCAAATTCTA-TTTTCAAA--AGTTAATTCATATTGCGAAAGGCGAGTTGAGCCTTTAATTTTCG
1 TCAAAATCTACTTTTCAAATTA-TTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
*
91564292 TTTT
65 TTTC
* * *
91564296 TCAAAATCTACTTTTTAAA-GATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGT
1 TCAAAATCTACTTTTCAAATTATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGT
91564360 TTC
66 TTC
*
91564363 TCAAAATCTACTTTTCAAATTATTAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTTAATTT
1 TCAAAATCTACTTTTCAAATTATTAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTT
91564425 CTACTTTTAA
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
66 9 0.08
67 66 0.58
68 31 0.27
69 8 0.07
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.41
Consensus pattern (68 bp):
TCAAAATCTACTTTTCAAATTATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGT
TTC
Found at i:91568215 original size:16 final size:17
Alignment explanation
Indices: 91568194--91568226 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
91568184 TTTTAAAAAA
91568194 ATTT-AATATATCAAAT
1 ATTTAAATATATCAAAT
91568210 ATTTAAATATATCAAAT
1 ATTTAAATATATCAAAT
91568227 GAATTAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTTAAATATATCAAAT
Found at i:91569729 original size:123 final size:124
Alignment explanation
Indices: 91569489--91569736 Score: 489
Period size: 123 Copynumber: 2.0 Consensus size: 124
91569479 TTTCATGAAA
91569489 GGAATTTGATATTGGCTTTGGAAATATCTGGAAAGAGTTGTAAAGTTGATAATATAAAAAAAAGA
1 GGAATTTGATATTGGCTTTGGAAATATCTGGAAAGAGTTGTAAAGTTGATAATATAAAAAAAAGA
91569554 CCAAATCATAAATTTTGAAAAATATTGATTATTGCGTATTATTTAACATGAAACAAATT
66 CCAAATCATAAATTTTGAAAAATATTGATTATTGCGTATTATTTAACATGAAACAAATT
91569613 GGAATTTGATATTGGCTTTGGAAATATCTGGAAAGAGTTGTAAAGTTGATAATAT-AAAAAAAGA
1 GGAATTTGATATTGGCTTTGGAAATATCTGGAAAGAGTTGTAAAGTTGATAATATAAAAAAAAGA
91569677 CCAAATCATAAATTTTGAAAAATATTGATTATTGCGTATTATTTAACATGAAACAAATT
66 CCAAATCATAAATTTTGAAAAATATTGATTATTGCGTATTATTTAACATGAAACAAATT
91569736 G
1 G
91569737 AAATGTGTTT
Statistics
Matches: 124, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
123 69 0.56
124 55 0.44
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (124 bp):
GGAATTTGATATTGGCTTTGGAAATATCTGGAAAGAGTTGTAAAGTTGATAATATAAAAAAAAGA
CCAAATCATAAATTTTGAAAAATATTGATTATTGCGTATTATTTAACATGAAACAAATT
Found at i:91576449 original size:19 final size:19
Alignment explanation
Indices: 91576425--91576463 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91576415 TTTATTTATG
91576425 TTAATTAAGT-TAGGTTAAT
1 TTAATTAA-TCTAGGTTAAT
91576444 TTAATTAATCTAGGTTAAT
1 TTAATTAATCTAGGTTAAT
91576463 T
1 T
91576464 AAAGATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.49
Consensus pattern (19 bp):
TTAATTAATCTAGGTTAAT
Found at i:91579054 original size:18 final size:18
Alignment explanation
Indices: 91579028--91579068 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
91579018 AAAACATCAT
91579028 TGTTCAAGGGGA-ATCTAC
1 TGTTCAAGGGGAGA-CTAC
*
91579046 TGTTTAAGGGGAGACTAC
1 TGTTCAAGGGGAGACTAC
91579064 TGTTC
1 TGTTC
91579069 CAGAAAGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (18 bp):
TGTTCAAGGGGAGACTAC
Found at i:91588615 original size:14 final size:14
Alignment explanation
Indices: 91588572--91588623 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
91588562 TAATTTGTTT
* *
91588572 TATATTATATTAGA
1 TATATTAAATTATA
*
91588586 TATATATATATATATA
1 TATAT-TAAAT-TATA
91588602 TATATTAAATTATA
1 TATATTAAATTATA
*
91588616 CATATTAA
1 TATATTAA
91588624 TCATTAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 16 0.48
15 9 0.27
16 8 0.24
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (14 bp):
TATATTAAATTATA
Found at i:91589211 original size:20 final size:20
Alignment explanation
Indices: 91589178--91589216 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
91589168 AATATATAAC
* *
91589178 ATATTTAATTAAAATAAATA
1 ATATTTAATAAAAAAAAATA
*
91589198 ATATTTCATAAAAAAAAAT
1 ATATTTAATAAAAAAAAAT
91589217 TGAAAACACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATTTAATAAAAAAAAATA
Found at i:91590935 original size:103 final size:103
Alignment explanation
Indices: 91590756--91590960 Score: 374
Period size: 103 Copynumber: 2.0 Consensus size: 103
91590746 TGATTGAGGT
** *
91590756 TATACTTATTATTGGTAATCAGTATGTCACCAAATATAGAACCTTACTCCCACTAAACTTATGGT
1 TATACTTATTATTGACAATCAGTATGGCACCAAATATAGAACCTTACTCCCACTAAACTTATGGT
91590821 ATATACGATTATCAATAAAATTTATCTCTAAACCAAAC
66 ATATACGATTATCAATAAAATTTATCTCTAAACCAAAC
91590859 TATACTTATTATTGACAATCAGTATGGCACCAAATATAGAACCTTACTCCCACTAAACTTATGGT
1 TATACTTATTATTGACAATCAGTATGGCACCAAATATAGAACCTTACTCCCACTAAACTTATGGT
*
91590924 ATATACTATTATCAATAAAATTTATCTCTAAACCAAA
66 ATATACGATTATCAATAAAATTTATCTCTAAACCAAA
91590961 TGAGATAATC
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 98 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.34
Consensus pattern (103 bp):
TATACTTATTATTGACAATCAGTATGGCACCAAATATAGAACCTTACTCCCACTAAACTTATGGT
ATATACGATTATCAATAAAATTTATCTCTAAACCAAAC
Found at i:91594313 original size:17 final size:16
Alignment explanation
Indices: 91594292--91594326 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
91594282 TTGCATATAA
91594292 TATATATACACAC-AT
1 TATATATACACACAAT
91594307 TATATATACACACAAT
1 TATATATACACACAAT
91594323 TATA
1 TATA
91594327 ATAATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (16 bp):
TATATATACACACAAT
Found at i:91594951 original size:4 final size:4
Alignment explanation
Indices: 91594942--91594966 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
91594932 TCAATTGATT
91594942 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
91594967 CCTTCATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:91595889 original size:3 final size:3
Alignment explanation
Indices: 91595881--91596042 Score: 87
Period size: 3 Copynumber: 52.7 Consensus size: 3
91595871 TCTCTCTCAT
* ** * ** *
91595881 AAG AAG AAG AAG AAG AAG AAG GAG AA- AGAG GGG GAG GTG GAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG
* * *
91595926 GAG AAG GAG AAG GAG AAGG AAG AAG AAG AAG AAAG AAG AAAG AAG AAAG
1 AAG AAG AAG AAG AAG AA-G AAG AAG AAG AAG -AAG AAG -AAG AAG -AAG
* * * * * * *
91595975 AAG AAAG AA- AA- AAG AAG AAAG GAG GAG GAG GAG GAG GAG GAG AAG
1 AAG -AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG AAG
91596020 AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AA
91596043 ACATAAAATT
Statistics
Matches: 134, Mismatches: 16, Indels: 18
0.80 0.10 0.11
Matches are distributed among these distances:
2 5 0.04
3 111 0.83
4 18 0.13
ACGTcount: A:0.58, C:0.00, G:0.41, T:0.01
Consensus pattern (3 bp):
AAG
Found at i:91595961 original size:7 final size:7
Alignment explanation
Indices: 91595939--91595995 Score: 89
Period size: 7 Copynumber: 8.3 Consensus size: 7
91595929 AAGGAGAAGG
*
91595939 AGAAGGA
1 AGAAGAA
91595946 AGAAG-A
1 AGAAGAA
91595952 AGAAGAA
1 AGAAGAA
91595959 AGAAGAA
1 AGAAGAA
91595966 AGAAGAA
1 AGAAGAA
91595973 AGAAGAA
1 AGAAGAA
*
91595980 AGAAAAA
1 AGAAGAA
91595987 AGAAGAA
1 AGAAGAA
91595994 AG
1 AG
91595996 GAGGAGGAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
6 6 0.13
7 41 0.87
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (7 bp):
AGAAGAA
Found at i:91596590 original size:2 final size:2
Alignment explanation
Indices: 91596583--91596621 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
91596573 CTTATGCTTT
91596583 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91596622 TCTAGATAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91603025 original size:29 final size:29
Alignment explanation
Indices: 91602983--91603044 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
91602973 TGGAATTGGT
* ** *
91602983 GAACGAAAGTGAGAGGGGTATAAGTAGGA
1 GAACCAAAGTGAGAAAGGTATAAGTAAGA
91603012 GAACCAAAGTGAGAAAGGTATAAGTAAGA
1 GAACCAAAGTGAGAAAGGTATAAGTAAGA
91603041 GAAC
1 GAAC
91603045 TGAAGATGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.47, C:0.06, G:0.34, T:0.13
Consensus pattern (29 bp):
GAACCAAAGTGAGAAAGGTATAAGTAAGA
Found at i:91614363 original size:15 final size:14
Alignment explanation
Indices: 91614343--91614382 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
91614333 AATAAAATAA
*
91614343 TATATTTAAACAATT
1 TATATTTAAA-AAAT
91614358 TATATTTAAAAAAT
1 TATATTTAAAAAAT
*
91614372 TATTTTTAAAA
1 TATATTTAAAA
91614383 GAATATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
TATATTTAAAAAAT
Found at i:91620377 original size:21 final size:20
Alignment explanation
Indices: 91620321--91620382 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
91620311 TTGCTAAAGT
*
91620321 TTTAATGTCAAACTTCAATGA
1 TTTAAT-TCAAATTTCAATGA
***
91620342 TTTAAGTTGTTATTTCAATGCA
1 TTTAA-TTCAAATTTCAATG-A
91620364 TTTAATTCAAATTTACAAT
1 TTTAATTCAAATTT-CAAT
91620383 TTTTTAATGC
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.45
Consensus pattern (20 bp):
TTTAATTCAAATTTCAATGA
Found at i:91620388 original size:21 final size:21
Alignment explanation
Indices: 91620364--91620407 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
91620354 TTTCAATGCA
*
91620364 TTTAATTC-AAATTTACAATTT
1 TTTAATGCTAAATTTA-AATTT
*
91620385 TTTAATGCTACATTTAAATTT
1 TTTAATGCTAAATTTAAATTT
91620406 TT
1 TT
91620408 GCTTAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTAATGCTAAATTTAAATTT
Found at i:91622953 original size:29 final size:29
Alignment explanation
Indices: 91622911--91622968 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
91622901 ACACGATCGA
* * *
91622911 TCACATGGCTTGTCATACGCCCGTGTGGC
1 TCACACGGCCTGTCACACGCCCGTGTGGC
91622940 TCACACGGCCTGTCACACGCCCGTGTGGC
1 TCACACGGCCTGTCACACGCCCGTGTGGC
91622969 AAACCCGCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.14, C:0.36, G:0.28, T:0.22
Consensus pattern (29 bp):
TCACACGGCCTGTCACACGCCCGTGTGGC
Found at i:91639426 original size:15 final size:15
Alignment explanation
Indices: 91639406--91639435 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91639396 TATTTTATTT
*
91639406 ATATTAGGATAATTA
1 ATATTAAGATAATTA
91639421 ATATTAAGATAATTA
1 ATATTAAGATAATTA
91639436 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:91639463 original size:27 final size:26
Alignment explanation
Indices: 91639402--91639464 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
91639392 ACTCTATTTT
91639402 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
91639429 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
91639457 ATTTTATT
1 ATTTTATT
91639465 TTAATTATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:91639489 original size:20 final size:20
Alignment explanation
Indices: 91639460--91639506 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
91639450 TTTTAGGATT
* *
91639460 TTAT-TTTAATTATATTTAA
1 TTATCTTTAATTAAATGTAA
*
91639479 TTATCTTTAATTAAATGTAT
1 TTATCTTTAATTAAATGTAA
91639499 TTATCTTT
1 TTATCTTT
91639507 TTAGAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (20 bp):
TTATCTTTAATTAAATGTAA
Found at i:91647526 original size:15 final size:15
Alignment explanation
Indices: 91647465--91647544 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
91647455 CAAAGATAAC
*
91647465 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
91647479 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * * *
91647494 GAGAAACCCGGAAGA
1 AAGAAATCCAGAATA
91647509 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
91647524 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
91647539 AAGAAA
1 AAGAAA
91647545 CCCAAGATAC
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
14 9 0.18
15 41 0.80
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.20, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:91647553 original size:15 final size:15
Alignment explanation
Indices: 91647476--91647553 Score: 63
Period size: 15 Copynumber: 5.2 Consensus size: 15
91647466 AGAAAACCGA
91647476 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
91647491 ATAGAGAAACCCGGAAG
1 ATAAAGAAATCC--AAG
91647508 --AAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
91647520 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
91647536 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
91647551 ATA
1 ATA
91647554 CGATACTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
12 2 0.04
15 42 0.88
16 1 0.02
17 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.19, T:0.10
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:91650639 original size:46 final size:46
Alignment explanation
Indices: 91650476--91650639 Score: 168
Period size: 46 Copynumber: 3.5 Consensus size: 46
91650466 ATAAGCGAAA
* * * * *
91650476 TCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAAC
1 TCGGACTCAACTCAACGAGCTCGGACATTCGTATCCATAAATGAAC
* * * * * ***
91650522 TCGGACTCAAGTCAACGAGCTCGGATACCTAGT-TACATCTCTCGAAC
1 TCGGACTCAACTCAACGAGCTCGGACA-TTCGTATCCATAAAT-GAAC
*
91650569 TCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAATGAAC
1 TCGGACTCAACTCAACGAGCTCGGACATTCGTATCCATAAATGAAC
*
91650615 TCGGACTCAACTCAACGAGTTCGGA
1 TCGGACTCAACTCAACGAGCTCGGA
91650640 TGCCCAAATA
Statistics
Matches: 94, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 59 0.63
47 35 0.37
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TCGGACTCAACTCAACGAGCTCGGACATTCGTATCCATAAATGAAC
Found at i:91650639 original size:93 final size:93
Alignment explanation
Indices: 91650471--91650640 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
91650461 CGCCCATAAG
* * * * *
91650471 CGAAATCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAGTCA
1 CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
91650536 ACGAGCTCGGATACCTAGTTACATCTCT
66 ACGAGCTCGGATACCTAGTTACATCTCT
* * *
91650564 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAATGAACTCGGACTCAACTCA
1 CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
91650629 ACGAGTTCGGAT
66 ACGAGCTCGGAT
91650641 GCCCAAATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATACCTAGTTACATCTCT
Found at i:91656284 original size:48 final size:48
Alignment explanation
Indices: 91656155--91656292 Score: 170
Period size: 48 Copynumber: 2.9 Consensus size: 48
91656145 ACATACTGAG
* * * * *
91656155 GCCGACGCCATATCCCAGATATGGTCTTACACTAGC-ACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATATCAAT
*
91656203 GCCGATGCCATGTCCCATACATGGTCTTACACTGGCTATCATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAAT
* * * *
91656251 GCTGTTGCCATGTCCCAGACATGGTTTTACACTGGCTCTCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT
91656293 TAATCGTGAT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 77 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAAT
Found at i:91661697 original size:41 final size:41
Alignment explanation
Indices: 91661644--91661793 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
91661634 CGCTGACTCA
* *
91661644 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
91661685 GAAGGCCCTTCGAAACTAGGTTC-GATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
91661725 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
91661766 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
91661794 TAAACCCCGA
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:91667522 original size:28 final size:28
Alignment explanation
Indices: 91667490--91667559 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
91667480 ATAGTAAGTC
91667490 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
91667518 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
91667546 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91667560 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:91675311 original size:28 final size:28
Alignment explanation
Indices: 91675279--91675348 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
91675269 ATAGTAAGTC
91675279 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
91675307 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
91675335 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91675349 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:91680635 original size:81 final size:81
Alignment explanation
Indices: 91680543--91680732 Score: 265
Period size: 81 Copynumber: 2.3 Consensus size: 81
91680533 CGCTGACTTA
* * * * * * *
91680543 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTTG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTT-GAAACCAAGCTCG
91680608 G-TTATGACACTGGCTC
65 GATTATGACACTGGCTC
* *
91680624 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTCAAAAGCCCTTGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTGAAACCAAGCTCGG
91680689 ATTATGACACTGGCTC
66 ATTATGACACTGGCTC
* *
91680705 AAAAGCTCTTCGAGACCAAGCTCAGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
91680733 TAAACCCCGA
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 9 0.09
81 88 0.91
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTGAAACCAAGCTCGG
ATTATGACACTGGCTC
Found at i:91680658 original size:41 final size:41
Alignment explanation
Indices: 91680543--91680732 Score: 267
Period size: 40 Copynumber: 4.7 Consensus size: 41
91680533 CGCTGACTTA
* *
91680543 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
91680584 GAAGGCCCTTCGAAACTAGGTTTGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
91680624 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
91680665 AAAAGCCCTT-GAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* *
91680705 AAAAGCTCTTCGAGACCAAGCTCAGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
91680733 TAAACCCCGA
Statistics
Matches: 129, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 70 0.54
41 59 0.46
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:91683825 original size:40 final size:40
Alignment explanation
Indices: 91683765--91683846 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
91683755 AAGTTTAAAG
*
91683765 TATGTCAAAATCACTCAATTTAGCTTAACATAAAGCTACT
1 TATGCCAAAATCACTCAATTTAGCTTAACATAAAGCTACT
91683805 TATGCCAAAATCACTCAATTTAGCTTAACATAAAGCTACT
1 TATGCCAAAATCACTCAATTTAGCTTAACATAAAGCTACT
91683845 TA
1 TA
91683847 AGACATCAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (40 bp):
TATGCCAAAATCACTCAATTTAGCTTAACATAAAGCTACT
Found at i:91685096 original size:42 final size:41
Alignment explanation
Indices: 91685027--91685138 Score: 161
Period size: 42 Copynumber: 2.7 Consensus size: 41
91685017 GTGCAGTTTT
* *
91685027 CACACGGCTAAGACATACGCCCGTGTCTTAGGCCGCGTAGCA
1 CACACGGCTAAGACACACG-CCTTGTCTTAGGCCGCGTAGCA
* *
91685069 CACACGGCTAAGACACACGCTCTTGTCTTAGGCCGTGTAGTA
1 CACACGGCTAAGACACACGC-CTTGTCTTAGGCCGCGTAGCA
91685111 CACACGGCTAAGACACACGCCTGTGTCT
1 CACACGGCTAAGACACACGCCT-TGTCT
91685139 CTGCTAGTGT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
41 3 0.05
42 61 0.95
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (41 bp):
CACACGGCTAAGACACACGCCTTGTCTTAGGCCGCGTAGCA
Found at i:91686711 original size:14 final size:14
Alignment explanation
Indices: 91686692--91686732 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
91686682 CCGTGAGTTG
*
91686692 AAGAAAAGAAAACA
1 AAGAAAAGAAAAAA
91686706 AAG-AAAGAAAAAAA
1 AAGAAAAG-AAAAAA
91686720 AAGAAAA-AAAAAA
1 AAGAAAAGAAAAAA
91686733 GTGTCCATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 10 0.42
14 11 0.46
15 3 0.12
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.00
Consensus pattern (14 bp):
AAGAAAAGAAAAAA
Found at i:91687984 original size:40 final size:39
Alignment explanation
Indices: 91687922--91688167 Score: 252
Period size: 40 Copynumber: 6.2 Consensus size: 39
91687912 CGGATGATAA
* *
91687922 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTATA-T
* * *
91687962 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTATAT
**
91688002 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTATAT
*
91688042 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA-TAT
* * *
91688080 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTATAT
* *
91688121 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTATAT
91688160 CC-GGCTAA
1 CCGGGCTAA
91688168 ACTCCAAAGG
Statistics
Matches: 181, Mismatches: 16, Indels: 20
0.83 0.07 0.09
Matches are distributed among these distances:
37 2 0.01
38 9 0.05
39 35 0.19
40 127 0.70
41 6 0.03
42 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTATAT
Found at i:91688126 original size:79 final size:80
Alignment explanation
Indices: 91687963--91688145 Score: 287
Period size: 79 Copynumber: 2.3 Consensus size: 80
91687953 TGGCTAATTT
*
91687963 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* * **
91688028 GCGAGCTATTATATT
66 GCAAGCTACTATAAC
* *
91688043 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
91688107 GCAAGTTACTATAAC
66 GCAAGCTACTATAAC
91688122 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
91688146 AGCTAGTGGC
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 60 0.63
80 35 0.37
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAAC
Found at i:91691310 original size:49 final size:48
Alignment explanation
Indices: 91691246--91691551 Score: 235
Period size: 46 Copynumber: 6.5 Consensus size: 48
91691236 AATTCTATGT
*
91691246 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCGATG
* * * * *
91691294 CCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTGTCG-GTGTCGATG
1 -CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG-GCCGATG
* * * * * *
91691343 CCATGTCCTAGACAGGTCTTACACTGA--CACACA-A-C-AAGCTGACG
1 -CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCGATG
*
91691387 CCATGTCCCAGACAGGTCTTATACT-AGCTCGT-ATA-ACTCGAGGCCGATG
1 -CATGTCCCAGACAGGTCTTACACTGA-CTC-TCATATA-TCGAGGCCGATG
* * * * *
91691436 CATGTCCCAGACATGTCTTACACT-AGCTCTC--GTCTCAATGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGAGGCCGATG
* * * *
91691482 CATGTCCCAGACATGTCCTACACTGGCTCTCATA-AT-GTGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCGATG
*
91691528 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
91691552 AGCACACATA
Statistics
Matches: 205, Mismatches: 38, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 1 0.00
46 72 0.35
47 5 0.02
48 29 0.14
49 70 0.34
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCGATG
Found at i:91697138 original size:2 final size:2
Alignment explanation
Indices: 91697124--91697161 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
91697114 TACAATTAAC
*
91697124 AT AT AT -T AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91697162 ATTCCCTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:91700184 original size:20 final size:20
Alignment explanation
Indices: 91700159--91700196 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
91700149 AAACCGAGAC
91700159 TAATTTT-TATTCTTTACAAT
1 TAATTTTATATT-TTTACAAT
91700179 TAATTTTATATTTTTACA
1 TAATTTTATATTTTTACA
91700197 CAAATTTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (20 bp):
TAATTTTATATTTTTACAAT
Found at i:91701060 original size:43 final size:43
Alignment explanation
Indices: 91701012--91701100 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
91701002 CTGAACTGTA
91701012 TGATAAATACTAGATTTGTTCTTAATTATGTGTTCTTAATGCT
1 TGATAAATACTAGATTTGTTCTTAATTATGTGTTCTTAATGCT
91701055 TGATAAATACTAGATTTGTTCTTAATTATGTGTTCTTAATGCT
1 TGATAAATACTAGATTTGTTCTTAATTATGTGTTCTTAATGCT
91701098 TGA
1 TGA
91701101 GTTAATATTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (43 bp):
TGATAAATACTAGATTTGTTCTTAATTATGTGTTCTTAATGCT
Found at i:91705299 original size:37 final size:37
Alignment explanation
Indices: 91705249--91705354 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
91705239 GCTCGAATAG
** *
91705249 TCTCCACTTGTAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
91705286 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
91705323 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
91705355 ATATATTTCC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:91705553 original size:48 final size:48
Alignment explanation
Indices: 91705495--91705928 Score: 706
Period size: 48 Copynumber: 9.0 Consensus size: 48
91705485 ATATACACAC
* * *
91705495 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91705543 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91705591 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
91705639 ATCTCATATATATTTCACATTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91705687 ATCTCATACATATTTCCCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91705735 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACAACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91705783 ATCTCATACATATTTCACACTAGCCATTCGGCTTCACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
91705831 ATCTCATATATATTTCACACTAGCCATACAGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
91705879 ATCTTATACATATTTCACACTAGCCATTCGGCTTTGCCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91705927 AT
1 AT
91705929 ATTTGTCTTG
Statistics
Matches: 359, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 359 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:91709601 original size:40 final size:40
Alignment explanation
Indices: 91709543--91709868 Score: 510
Period size: 40 Copynumber: 8.2 Consensus size: 40
91709533 CCGAATACAC
* * * *
91709543 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
91709583 AACACTAGCACGAATGCTCTTCGGGACTTAACTCTGG-TAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGC-CCGGATAT
* * * *
91709623 AACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGGTAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
91709663 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
91709703 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
91709743 ATCACTAGCATGAATGCTCTTCGGGAATTAGCCCGAATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
91709783 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
91709823 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
91709863 ATCACT
1 ATCACT
91709869 CTCAATTCTC
Statistics
Matches: 263, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
39 3 0.01
40 257 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:91711201 original size:37 final size:37
Alignment explanation
Indices: 91711146--91711248 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
91711136 TCGAATAGTC
* *
91711146 CCACTCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
91711183 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
91711220 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
91711249 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:91711452 original size:48 final size:48
Alignment explanation
Indices: 91711389--91711820 Score: 715
Period size: 48 Copynumber: 9.0 Consensus size: 48
91711379 ATATACACAC
* * *
91711389 ATCTC-TACATATTTCACATTAGCCATTCAGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
91711436 ATCTCAGGCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91711484 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
91711532 ATCTCATACATATTTCACATTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
91711580 ATCTCATACATATTTCGCACTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91711628 ATCTCATACATATTTCACACTAGCCATTCGGCTTTA-CACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91711675 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
91711723 ATCTCATATATATTTCACACTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
91711771 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91711819 AT
1 AT
91711821 ATTTGTCTTG
Statistics
Matches: 360, Mismatches: 23, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
47 52 0.14
48 308 0.86
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:91711738 original size:191 final size:192
Alignment explanation
Indices: 91711389--91711820 Score: 751
Period size: 191 Copynumber: 2.3 Consensus size: 192
91711379 ATATACACAC
* * * *
91711389 ATCTC-TACATATTTCACATTAGCCATTCAGCTTTACCAAATATACATATCTCAGGCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAGACATATTTCA
91711453 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
*
91711518 TACCACATATACATATCTCATACATATTTCACATTAGCCATACGGCTTTACCACATATATAT
131 TACCACATATACATATCTCATACATATTTCACACTAGCCATACGGCTTTACCACATATATAT
* * *
91711580 ATCTCATACATATTTCGCACTAGCCATTCGGATTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAGACATATTTCA
91711645 CACTAGCCATTCGGCTTTA-CACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
*
91711709 TACCACATATACATATCTCATATATATTTCACACTAGCCATACGGCTTTACCACATATATAT
131 TACCACATATACATATCTCATACATATTTCACACTAGCCATACGGCTTTACCACATATATAT
* *
91711771 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
91711821 ATTTGTCTTG
Statistics
Matches: 227, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
191 156 0.69
192 71 0.31
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (192 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAGACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
TACCACATATACATATCTCATACATATTTCACACTAGCCATACGGCTTTACCACATATATAT
Found at i:91716811 original size:5 final size:5
Alignment explanation
Indices: 91716793--91716877 Score: 70
Period size: 5 Copynumber: 16.6 Consensus size: 5
91716783 TGACTCCTTA
*
91716793 TTTA- TTTA- TTTAT TTTATT TTTAT TTTAT TTTATT TTTAT TTTCT TTTGATT
1 TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTA-T TTTAT TTTAT TTT-A-T
*
91716845 TTTATT TTTAT TTCAAT TTTA- -TTAT TTTAT TTT
1 TTTA-T TTTAT TT-TAT TTTAT TTTAT TTTAT TTT
91716878 GAAAGACATA
Statistics
Matches: 69, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
3 3 0.04
4 8 0.12
5 33 0.48
6 21 0.30
7 4 0.06
ACGTcount: A:0.19, C:0.02, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:91716816 original size:6 final size:6
Alignment explanation
Indices: 91716801--91716857 Score: 68
Period size: 6 Copynumber: 10.2 Consensus size: 6
91716791 TATTTATTTA
* *
91716801 TTTA-T TTTATT TTTA-T TTTA-T TTTATT TTTA-T TTTCTT TTGATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
91716845 TTTATT TTTATT T
1 TTTATT TTTATT T
91716858 CAATTTTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
5 18 0.40
6 27 0.60
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:91716817 original size:11 final size:11
Alignment explanation
Indices: 91716797--91716877 Score: 69
Period size: 11 Copynumber: 7.2 Consensus size: 11
91716787 TCCTTATTTA
91716797 TTTA-TTTA-T
1 TTTATTTTATT
91716806 TTTATTTT-TAT
1 TTTATTTTAT-T
91716817 TTTATTTTATT
1 TTTATTTTATT
*
91716828 TTTATTTTCTT
1 TTTATTTTATT
*
91716839 TTGATTTTTATT
1 TTTA-TTTTATT
*
91716851 TTTATTTCAATTT
1 TTTATTT-TA-TT
91716864 TATTATTTTATT
1 T-TTATTTTATT
91716876 TT
1 TT
91716878 GAAAGACATA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
9 4 0.07
10 3 0.05
11 27 0.47
12 14 0.24
13 4 0.07
14 6 0.10
ACGTcount: A:0.19, C:0.02, G:0.01, T:0.78
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:91720739 original size:40 final size:42
Alignment explanation
Indices: 91720669--91720911 Score: 174
Period size: 40 Copynumber: 6.0 Consensus size: 42
91720659 CGGAATTTAA
* * * *
91720669 CCGGATATAGCAACTCGCTCG-ATTGTCTTCGGGACATT-GC
1 CCGGATTTAGTAACTCGCACGAATTGCCTTCGGGACATTAGC
* * *
91720709 CCTG-TTATAGTGATTCGCAC-AATTGCCTTCGGGA-ATTAGC
1 CCGGATT-TAGTAACTCGCACGAATTGCCTTCGGGACATTAGC
*
91720749 CCGGATTTAGTAACTCGCACGAA-TGCCTTCGGGAC-TTAAC
1 CCGGATTTAGTAACTCGCACGAATTGCCTTCGGGACATTAGC
* * * * *
91720789 TCGGTTTTGGTAACTCGCAC-AAATGCCTTCGGGAC-TTAAC
1 CCGGATTTAGTAACTCGCACGAATTGCCTTCGGGACATTAGC
* *
91720829 CC-GATTTTGGTAACTCGCAC-AAATGCCTTCGGGA-ATT-GAC
1 CCGGA-TTTAGTAACTCGCACGAATTGCCTTCGGGACATTAG-C
* * **
91720869 CCGGATTTAGTCACTTAGCAC-AAAAGCCTTCGGGAC-TTAGC
1 CCGGATTTAGTAAC-TCGCACGAATTGCCTTCGGGACATTAGC
91720910 CC
1 CC
91720912 AGACACCATT
Statistics
Matches: 168, Mismatches: 21, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
39 7 0.04
40 131 0.78
41 29 0.17
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (42 bp):
CCGGATTTAGTAACTCGCACGAATTGCCTTCGGGACATTAGC
Found at i:91723610 original size:9 final size:9
Alignment explanation
Indices: 91723592--91723634 Score: 68
Period size: 9 Copynumber: 4.6 Consensus size: 9
91723582 CCCTTTCTTC
91723592 TTTCTCTTTT
1 TTTCT-TTTT
91723602 TTTCTTTTTT
1 TTTC-TTTTT
91723612 TTTCTTTTT
1 TTTCTTTTT
91723621 TTTCTTTTT
1 TTTCTTTTT
91723630 TTTCT
1 TTTCT
91723635 ATCTGTTTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
9 19 0.59
10 12 0.38
11 1 0.03
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:91723611 original size:10 final size:10
Alignment explanation
Indices: 91723592--91723632 Score: 66
Period size: 10 Copynumber: 4.2 Consensus size: 10
91723582 CCCTTTCTTC
*
91723592 TTTCTCTTTT
1 TTTCTTTTTT
91723602 TTTCTTTTTT
1 TTTCTTTTTT
91723612 TTTC-TTTTT
1 TTTCTTTTTT
91723621 TTTCTTTTTT
1 TTTCTTTTTT
91723631 TT
1 TT
91723633 CTATCTGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 9 0.31
10 20 0.69
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:91723634 original size:18 final size:20
Alignment explanation
Indices: 91723592--91723632 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
91723582 CCCTTTCTTC
91723592 TTTCTCTTTTTTTCTTTTTT
1 TTTCTCTTTTTTTCTTTTTT
91723612 TTTCT-TTTTTTTCTTTTTT
1 TTTCTCTTTTTTTCTTTTTT
91723631 TT
1 TT
91723633 CTATCTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (20 bp):
TTTCTCTTTTTTTCTTTTTT
Found at i:91723643 original size:19 final size:19
Alignment explanation
Indices: 91723602--91723643 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
91723592 TTTCTCTTTT
* *
91723602 TTTCTTTTTTTTTCTTTTT
1 TTTCTTTTTTTTTCTTCTG
91723621 TTTC-TTTTTTTTCTATCTG
1 TTTCTTTTTTTTTCT-TCTG
91723640 TTTC
1 TTTC
91723644 GTAAGGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTCTTTTTTTTTCTTCTG
Found at i:91729786 original size:17 final size:17
Alignment explanation
Indices: 91729764--91729797 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91729754 CCATAATTAA
91729764 ATTATTAAATATAATTT
1 ATTATTAAATATAATTT
* *
91729781 ATTATTATATTTAATTT
1 ATTATTAAATATAATTT
91729798 CAATTAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTATTAAATATAATTT
Found at i:91731119 original size:28 final size:28
Alignment explanation
Indices: 91731062--91731140 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 28
91731052 AAATAAAAAT
91731062 AAAAT-TTATAAAATGATTAAATTTTAATAA
1 AAAATATTATAAAAT--TTAAATTTTAAT-A
91731092 AAAATATT-TAAAAATTTAAATTTT-ATA
1 AAAATATTAT-AAAATTTAAATTTTAATA
91731119 AAAATATTATAAAATTATAAAT
1 AAAATATTATAAAATT-TAAAT
91731141 ATATAGAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
27 15 0.33
28 8 0.18
29 9 0.20
30 6 0.13
31 7 0.16
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (28 bp):
AAAATATTATAAAATTTAAATTTTAATA
Found at i:91731138 original size:19 final size:19
Alignment explanation
Indices: 91731114--91731238 Score: 59
Period size: 19 Copynumber: 6.5 Consensus size: 19
91731104 AATTTAAATT
91731114 TTATAAAAATATTATAAAA
1 TTATAAAAATATTATAAAA
91731133 TTAT--AAATA-TATAGAAA
1 TTATAAAAATATTATA-AAA
*
91731150 TATAGAAAAAGT-TTATAAAA
1 T-TATAAAAA-TATTATAAAA
* * *
91731170 TTTTATAAAGT-TGTAAGAAAA
1 TTATA-AAAATAT-T-ATAAAA
91731191 TTATACAAAATA-TA-AATAA
1 TTATA-AAAATATTATAA-AA
* *
91731210 ATAT-AAAATATGTAAAAAA
1 TTATAAAAATAT-TATAAAA
91731229 TTATAAAAAT
1 TTATAAAAAT
91731239 GATTGTACTA
Statistics
Matches: 81, Mismatches: 10, Indels: 29
0.68 0.08 0.24
Matches are distributed among these distances:
16 4 0.05
17 15 0.19
18 4 0.05
19 21 0.26
20 19 0.23
21 18 0.22
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (19 bp):
TTATAAAAATATTATAAAA
Found at i:91731145 original size:27 final size:27
Alignment explanation
Indices: 91731091--91731152 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
91731081 AATTTTAATA
*
91731091 AAAAATATTTAAAAATTTAAATTTTAT
1 AAAAATATTTAAAAATTTAAATTATAT
91731118 AAAAATA-TTATAAAATTATAAA-TATAT
1 AAAAATATTTA-AAAATT-TAAATTATAT
*
91731145 AGAAATAT
1 AAAAATAT
91731153 AGAAAAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
26 3 0.10
27 23 0.77
28 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (27 bp):
AAAAATATTTAAAAATTTAAATTATAT
Found at i:91731297 original size:18 final size:18
Alignment explanation
Indices: 91731256--91731299 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
91731246 CTAAAAGAAG
91731256 CATTTTATAATTTTTCTAT
1 CATTTT-TAATTTTTCTAT
* * *
91731275 AATTTTTATTTTTTTTAT
1 CATTTTTAATTTTTCTAT
91731293 CATTTTT
1 CATTTTT
91731300 TGCCACAAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (18 bp):
CATTTTTAATTTTTCTAT
Found at i:91731441 original size:17 final size:18
Alignment explanation
Indices: 91731401--91731472 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
91731391 TTTTCGATGC
91731401 ATTTTATAATTTTTATAAA
1 ATTTTAT-ATTTTTATAAA
*
91731420 ATTTTATATTTTTA-AAT
1 ATTTTATATTTTTATAAA
* *
91731437 TTTTTATATTTCTATTAAA
1 ATTTTATATTTTTA-TAAA
* *
91731456 ATTTAATAATTTTATAA
1 ATTTTATATTTTTATAA
91731473 CTTTTATTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
17 14 0.33
18 10 0.23
19 19 0.44
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTATATTTTTATAAA
Found at i:91731478 original size:36 final size:36
Alignment explanation
Indices: 91731402--91731479 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 36
91731392 TTTCGATGCA
* * * *
91731402 TTTTATAATTTTTATAAAATTTTATATTTTTAAATT
1 TTTTATAATTTCTATAAAATTTAATAATTTTAAATC
91731438 TTTTAT-ATTTCTATTAAAATTTAATAATTTTATAA-C
1 TTTTATAATTTCTA-TAAAATTTAATAATTTTA-AATC
91731474 TTTTAT
1 TTTTAT
91731480 TGTTTTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 6 0.17
36 28 0.78
37 2 0.06
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (36 bp):
TTTTATAATTTCTATAAAATTTAATAATTTTAAATC
Found at i:91737120 original size:41 final size:41
Alignment explanation
Indices: 91737063--91737241 Score: 182
Period size: 41 Copynumber: 4.3 Consensus size: 41
91737053 TTACAAGCTA
*
91737063 TGTATCAGCAAAGCTCCCCTCGTAAGCTTATG-GATAAGTTG
1 TGTATCAGCGAAGCT-CCCTCGTAAGCTTATGTGATAAGTTG
* * *
91737104 TGTATCAGCGAAGCTCCCCCATGAGCTTATGTGATAAGTTG
1 TGTATCAGCGAAGCTCCCTCGTAAGCTTATGTGATAAGTTG
* * * * * *
91737145 TGTGATCAGCAAAGCTCCCTTGTGAGATTAT-AGATAAGCTG
1 TGT-ATCAGCGAAGCTCCCTCGTAAGCTTATGTGATAAGTTG
* * * *
91737186 TGTATCAACGAAGCTCCCTACGTAAGCTTAAGTGACAAATTG
1 TGTATCAGCGAAGCTCCCT-CGTAAGCTTATGTGATAAGTTG
*
91737228 TGTATCAGTGAAGC
1 TGTATCAGCGAAGC
91737242 ACAAGTTAGT
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
40 27 0.24
41 44 0.40
42 40 0.36
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (41 bp):
TGTATCAGCGAAGCTCCCTCGTAAGCTTATGTGATAAGTTG
Found at i:91737235 original size:82 final size:82
Alignment explanation
Indices: 91737063--91737235 Score: 213
Period size: 82 Copynumber: 2.1 Consensus size: 82
91737053 TTACAAGCTA
* * * * * *
91737063 TGTATCAGCAAAGCTCCCCTCGTAAGCTTATGGATAAGTTGTGTATCAGCGAAGCTCCCCCATGA
1 TGTATCAGCAAAGCTCCCCTCGTAAGATTATAGATAAGCTGTGTATCAACGAAGCTCCCACATAA
* * *
91737128 GCTTATGTGATAAGTTG
66 GCTTAAGTGACAAATTG
* * *
91737145 TGTGATCAGCAAAGCT-CCCTTGTGAGATTATAGATAAGCTGTGTATCAACGAAGCTCCCTACGT
1 TGT-ATCAGCAAAGCTCCCCTCGTAAGATTATAGATAAGCTGTGTATCAACGAAGCTCCC-ACAT
91737209 AAGCTTAAGTGACAAATTG
64 AAGCTTAAGTGACAAATTG
91737228 TGTATCAG
1 TGTATCAG
91737236 TGAAGCACAA
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
82 45 0.58
83 32 0.42
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (82 bp):
TGTATCAGCAAAGCTCCCCTCGTAAGATTATAGATAAGCTGTGTATCAACGAAGCTCCCACATAA
GCTTAAGTGACAAATTG
Found at i:91739561 original size:71 final size:71
Alignment explanation
Indices: 91739441--91739587 Score: 242
Period size: 71 Copynumber: 2.1 Consensus size: 71
91739431 GGAAATTTTG
* * *
91739441 AAAA-TGTTAATAGGAAGTCATATTCATCAAATTGGATGTTGTAATGAAATTGAGACTGATAAAT
1 AAAATTGTTAATAGGAAGTCATATGCATCAAATTGGATGTTGTAATGAAATTAAGACTAATAAAT
*
91739505 TGAAAT
66 TAAAAT
*
91739511 AAAATTGTTAATAGGAAGTCATATGCCTCAAATTGGATGTTGTAATGAAATTAAGACTAATAAAT
1 AAAATTGTTAATAGGAAGTCATATGCATCAAATTGGATGTTGTAATGAAATTAAGACTAATAAAT
91739576 TAAAAT
66 TAAAAT
91739582 AAAATT
1 AAAATT
91739588 ACTGCATAGA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
70 4 0.06
71 67 0.94
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (71 bp):
AAAATTGTTAATAGGAAGTCATATGCATCAAATTGGATGTTGTAATGAAATTAAGACTAATAAAT
TAAAAT
Found at i:91745110 original size:13 final size:13
Alignment explanation
Indices: 91745092--91745118 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91745082 ATTACTTATC
91745092 ATTTCTGATCGAG
1 ATTTCTGATCGAG
91745105 ATTTCTGATCGAG
1 ATTTCTGATCGAG
91745118 A
1 A
91745119 CCTGAGATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (13 bp):
ATTTCTGATCGAG
Found at i:91747425 original size:46 final size:46
Alignment explanation
Indices: 91747372--91747547 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
91747362 TATTTGGGCA
*
91747372 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
91747418 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * * **
91747465 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
91747511 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91747548 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 63 0.61
47 29 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:91747521 original size:93 final size:93
Alignment explanation
Indices: 91747368--91747540 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
91747358 GGGATATTTG
* * *
91747368 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
91747433 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
91747461 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
*
91747526 TTGAGTCCGAGTTCG
66 TTGAGTCCAAGTTCG
91747541 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:91751390 original size:43 final size:42
Alignment explanation
Indices: 91751285--91751393 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
91751275 GATTTGTGAC
* * *
91751285 TTACGTGTAAGACCAAGTCTGGGATATTGGCATCGTATATGA
1 TTACGTGTAAGACCAAGTCTGGGATAATGGCACCGAATATGA
* * *
91751327 TTTCGTGTAAGATCC-TGTCTGGGATAATGGCACCGAAATTTGA
1 TTACGTGTAAGA-CCAAGTCTGGGATAATGGCACCG-AATATGA
* *
91751370 TTACATGTAAGACCACGTCTGGGA
1 TTACGTGTAAGACCAAGTCTGGGA
91751394 CATTGGCATT
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.55
43 25 0.45
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (42 bp):
TTACGTGTAAGACCAAGTCTGGGATAATGGCACCGAATATGA
Found at i:91751401 original size:43 final size:42
Alignment explanation
Indices: 91751235--91751402 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 42
91751225 GGATTCCAAT
* * *
91751235 ATTTG-TTATCGTGTAAGACCACGTCTAGGACGTTGGCATTGA
1 ATTTGATTA-CGTGTAAGACCACGTCTGGGACATTGGCATCGA
* * * *
91751277 TTTGTGACTTACGTGTAAGACCAAGTCTGGGATATTGGCATCGT
1 ATT-TGA-TTACGTGTAAGACCACGTCTGGGACATTGGCATCGA
* * * * * *
91751321 ATATGATTTCGTGTAAGATCC-TGTCTGGGATAATGGCACCGAA
1 ATTTGATTACGTGTAAGA-CCACGTCTGGGACATTGGCATCG-A
*
91751364 ATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 ATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
91751403 TGTACAAGCT
Statistics
Matches: 99, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
42 32 0.32
43 36 0.36
44 28 0.28
45 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
ATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGA
Found at i:91760110 original size:41 final size:40
Alignment explanation
Indices: 91760048--91760295 Score: 212
Period size: 41 Copynumber: 6.1 Consensus size: 40
91760038 AGAATATTGT
* * *
91760048 TGAATTGCACATACATCCCTCTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCC-CTGTTTGTACTTCGGTACCCC
* **
91760089 TGAATTGCACCTACGTGCCTCTGTTTGTACTTCGGTACCAT
1 TGAATTGCACATACGTGCC-CTGTTTGTACTTCGGTACCCC
* **
91760130 TGAATTG--CATACGTGCCCCTATTTGTACTTTAGTACCCC
1 TGAATTGCACATACGTG-CCCTGTTTGTACTTCGGTACCCC
* ** * * *
91760169 TTAATAACTCATATGTGCCCTTGTTTGTACTTCGGTACCCT
1 TGAATTGCACATACGTGCCC-TGTTTGTACTTCGGTACCCC
* * * * * *
91760210 TGAATTGTACGTACATGACCCTATTTGTACTTCAGTACCCT
1 TGAATTGCACATACGTG-CCCTGTTTGTACTTCGGTACCCC
* * *
91760251 TGAATTGCACATATGTGCCCCTGTTTGGACTTCGGTGCCCC
1 TGAATTGCACATACGTG-CCCTGTTTGTACTTCGGTACCCC
91760292 TGAA
1 TGAA
91760296 AGCACTTGTG
Statistics
Matches: 162, Mismatches: 40, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
39 27 0.17
40 5 0.03
41 127 0.78
42 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (40 bp):
TGAATTGCACATACGTGCCCTGTTTGTACTTCGGTACCCC
Found at i:91760159 original size:80 final size:80
Alignment explanation
Indices: 91760047--91760286 Score: 268
Period size: 80 Copynumber: 3.0 Consensus size: 80
91760037 AAGAATATTG
* * * * *
91760047 TTGAATTGCACATACAT-CCCTCTGTTTGTACTTTGGTACCCCTGAATTGCACCTACGTGCCTCT
1 TTGAATTG-ACATACATGACC-CTATTTGTACTTTAGTACCCCTGAATTGCACATATGTGCC-CT
91760111 GTTTGTACTTCGGTACCA
63 GTTTGTACTTCGGTACCA
* * * ** *
91760129 TTGAATTG-CATACGTGCCCCTATTTGTACTTTAGTACCCCTTAATAACTCATATGTGCCCTTGT
1 TTGAATTGACATACATGACCCTATTTGTACTTTAGTACCCCTGAATTGCACATATGTGCCC-TGT
*
91760193 TTGTACTTCGGTACCC
65 TTGTACTTCGGTACCA
* * *
91760209 TTGAATTGTACGTACATGACCCTATTTGTACTTCAGTACCCTTGAATTGCACATATGTGCCCCTG
1 TTGAATTG-ACATACATGACCCTATTTGTACTTTAGTACCCCTGAATTGCACATATGTG-CCCTG
*
91760274 TTTGGACTTCGGT
64 TTTGTACTTCGGT
91760287 GCCCCTGAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 64 0.48
81 3 0.02
82 62 0.47
83 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.38
Consensus pattern (80 bp):
TTGAATTGACATACATGACCCTATTTGTACTTTAGTACCCCTGAATTGCACATATGTGCCCTGTT
TGTACTTCGGTACCA
Found at i:91760219 original size:21 final size:20
Alignment explanation
Indices: 91760193--91760257 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
91760183 GTGCCCTTGT
91760193 TTGTACTTCGGTACCCTTGAA
1 TTGTACTTC-GTACCCTTGAA
* * *
91760214 TTGTACGTACATGACCC-T-AT
1 TTGTAC-TTCGT-ACCCTTGAA
91760234 TTGTACTTCAGTACCCTTGAA
1 TTGTACTTC-GTACCCTTGAA
91760255 TTG
1 TTG
91760258 CACATATGTG
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
19 6 0.18
20 9 0.27
21 12 0.36
22 6 0.18
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (20 bp):
TTGTACTTCGTACCCTTGAA
Found at i:91760267 original size:82 final size:80
Alignment explanation
Indices: 91760071--91760295 Score: 256
Period size: 82 Copynumber: 2.8 Consensus size: 80
91760061 CATCCCTCTG
* * * * *
91760071 TTTGTACTTTGGTACCCCTGAATTGCACCTACGTG-CCTCTGTTTGTACTTCGGTACCATTGAAT
1 TTTGTACTTTAGTACCCTTGAATTGCACATATGTGCCCT-TGTTTGTACTTCGGTACCCTTGAAT
* *
91760135 TGCATACGTGCCCCTA
65 TGCATACATGACCCTA
** *
91760151 TTTGTACTTTAGTACCCCTT-AATAACTCATATGTGCCCTTGTTTGTACTTCGGTACCCTTGAAT
1 TTTGTACTTTAGTA-CCCTTGAATTGCACATATGTGCCCTTGTTTGTACTTCGGTACCCTTGAAT
*
91760215 TGTACGTACATGACCCTA
65 TG--CATACATGACCCTA
* * * * *
91760233 TTTGTACTTCAGTACCCTTGAATTGCACATATGTGCCCCTGTTTGGACTTCGGTGCCCCTGAA
1 TTTGTACTTTAGTACCCTTGAATTGCACATATGTGCCCTTGTTTGTACTTCGGTACCCTTGAA
91760296 AGCACTTGTG
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
80 49 0.40
81 12 0.10
82 60 0.50
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (80 bp):
TTTGTACTTTAGTACCCTTGAATTGCACATATGTGCCCTTGTTTGTACTTCGGTACCCTTGAATT
GCATACATGACCCTA
Found at i:91762329 original size:19 final size:19
Alignment explanation
Indices: 91762234--91762338 Score: 61
Period size: 19 Copynumber: 5.5 Consensus size: 19
91762224 CCATAAGCTT
*
91762234 CCAAAATTTCTAACAAAATG
1 CCAAAATTTCTAAC-AAATA
**
91762254 CCAAAATTTCTAACCGATA
1 CCAAAATTTCTAACAAATA
* ** *
91762273 CC-AAGTTCTCTGTGCAACT-
1 CCAAAATT-TCT-AACAAATA
* * *
91762292 CTAAAGTTTTTAACAAATA
1 CCAAAATTTCTAACAAATA
*
91762311 CCAAAATTTCTAACTAATA
1 CCAAAATTTCTAACAAATA
*
91762330 CCGAAATTT
1 CCAAAATTT
91762339 TTATGAGAAG
Statistics
Matches: 62, Mismatches: 19, Indels: 9
0.69 0.21 0.10
Matches are distributed among these distances:
18 8 0.13
19 33 0.53
20 21 0.34
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (19 bp):
CCAAAATTTCTAACAAATA
Found at i:91764066 original size:20 final size:20
Alignment explanation
Indices: 91764037--91764075 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
91764027 TAGATATAAA
*
91764037 AATTTGTAACCAAATACCAT
1 AATTTCTAACCAAATACCAT
91764057 AATTTCTAACCAAATACCA
1 AATTTCTAACCAAATACCA
91764076 AAATCTCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
AATTTCTAACCAAATACCAT
Found at i:91764084 original size:20 final size:20
Alignment explanation
Indices: 91764043--91764084 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
91764033 TAAAAATTTG
* *
91764043 TAACCAAATACCATAATTTC
1 TAACCAAATACCAAAATCTC
91764063 TAACCAAATACCAAAATCTC
1 TAACCAAATACCAAAATCTC
91764083 TA
1 TA
91764085 TAACAACCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
TAACCAAATACCAAAATCTC
Found at i:91764422 original size:15 final size:15
Alignment explanation
Indices: 91764376--91764423 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
91764366 TGGTTAATTA
*
91764376 TAATTAATTTTTAAT
1 TAATTAAATTTTAAT
* * *
91764391 TAAATAAATTATGAT
1 TAATTAAATTTTAAT
*
91764406 TAATTAAGTTTTAAT
1 TAATTAAATTTTAAT
91764421 TAA
1 TAA
91764424 AAGTATATAA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (15 bp):
TAATTAAATTTTAAT
Found at i:91767005 original size:21 final size:21
Alignment explanation
Indices: 91766972--91767017 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
91766962 TATACCAATG
*
91766972 AATTTGACATCAATTTAATAC
1 AATTTGACATCAATTCAATAC
*
91766993 AATTT-ACATTCAATTCAATCC
1 AATTTGACA-TCAATTCAATAC
91767014 AATT
1 AATT
91767018 CATATTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTGACATCAATTCAATAC
Found at i:91768530 original size:30 final size:30
Alignment explanation
Indices: 91768463--91768532 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
91768453 GTAATCTCGA
* *
91768463 TATAATGCCAACTTGTGTGAGCAAATCTAT
1 TATAATGTCAACTTGTGTGAACAAATCTAT
* * *
91768493 TATAATGTCAACTTTTGTGAACAATTTTAT
1 TATAATGTCAACTTGTGTGAACAAATCTAT
91768523 TATAATGTCA
1 TATAATGTCA
91768533 GCATTCTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (30 bp):
TATAATGTCAACTTGTGTGAACAAATCTAT
Found at i:91768597 original size:79 final size:79
Alignment explanation
Indices: 91768463--91768613 Score: 230
Period size: 79 Copynumber: 1.9 Consensus size: 79
91768453 GTAATCTCGA
* * * *
91768463 TATAATGCCAACTTGTGTGAGCAAATCTATTATAATGTCAACTTTTGTGAACAATTTTATTATAA
1 TATAATGCCAACTTGTGTAAGCAAATCAATTATAATGTCAACTTGTGTGAACAATTCTATTATAA
91768528 TGTCAGCATTCTAT
66 TGTCAGCATTCTAT
* * * *
91768542 TATAATGTCAGCTTGTGTAAGCAAATCAATTATAATGTTAACTTGTGTGAGCAATTCTATTATAA
1 TATAATGCCAACTTGTGTAAGCAAATCAATTATAATGTCAACTTGTGTGAACAATTCTATTATAA
91768607 TGTCAGC
66 TGTCAGC
91768614 TTGTGTGAGA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 64 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (79 bp):
TATAATGCCAACTTGTGTAAGCAAATCAATTATAATGTCAACTTGTGTGAACAATTCTATTATAA
TGTCAGCATTCTAT
Found at i:91768620 original size:30 final size:30
Alignment explanation
Indices: 91768535--91768655 Score: 138
Period size: 30 Copynumber: 4.1 Consensus size: 30
91768525 TAATGTCAGC
*
91768535 ATTCTATTATAATGTCAGCTTGTGTAAGCA
1 ATTCTATTATAATGTCAGCTTGTGTGAGCA
* * * *
91768565 AATCAATTATAATGTTAACTTGTGTGAGCA
1 ATTCTATTATAATGTCAGCTTGTGTGAGCA
91768595 ATTCTATTATAATGTCAGCTTGTGTGAG-A
1 ATTCTATTATAATGTCAGCTTGTGTGAGCA
* * * *
91768624 A-CCTTATCATAAAGTTAGCTTGTGTGAGCA
1 ATTC-TATTATAATGTCAGCTTGTGTGAGCA
91768654 AT
1 AT
91768656 ATAATCACAC
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
28 1 0.01
29 23 0.31
30 51 0.68
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.38
Consensus pattern (30 bp):
ATTCTATTATAATGTCAGCTTGTGTGAGCA
Found at i:91772515 original size:29 final size:29
Alignment explanation
Indices: 91772481--91772612 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
91772471 TACTCGATTT
** * *
91772481 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
91772510 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
91772539 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
91772568 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
91772597 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
91772613 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:91776240 original size:19 final size:19
Alignment explanation
Indices: 91776212--91776279 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
91776202 ACATATTCCA
91776212 TTAGAAATTTAGGTATTCG
1 TTAGAAATTTAGGTATTCG
* * *
91776231 TTAGAGATTTTGGTATTCA
1 TTAGAAATTTAGGTATTCG
91776250 TTAAGAAATTTCA-GTATTCG
1 TT-AGAAATTT-AGGTATTCG
91776270 TTAGGAAATT
1 TTA-GAAATT
91776280 AAAAAATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
19 19 0.47
20 21 0.52
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43
Consensus pattern (19 bp):
TTAGAAATTTAGGTATTCG
Found at i:91777862 original size:2 final size:2
Alignment explanation
Indices: 91777855--91777927 Score: 85
Period size: 2 Copynumber: 36.5 Consensus size: 2
91777845 AATTTACGTG
* * * * *
91777855 TA TA TA TA TA TA TCA -A TT TG TA TG TA TT TA TG TA TA TA TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91777897 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91777928 TTTAAATTGT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
1 1 0.02
2 58 0.97
3 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91778013 original size:9 final size:10
Alignment explanation
Indices: 91777989--91778022 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
91777979 TATTTTAGAA
*
91777989 ATTTTTATAT
1 ATTTTTTTAT
*
91777999 ATTTTTTTTT
1 ATTTTTTTAT
91778009 ATTTTTTTAT
1 ATTTTTTTAT
91778019 ATTT
1 ATTT
91778023 AAAAAATAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:91779780 original size:304 final size:304
Alignment explanation
Indices: 91779218--91780084 Score: 1414
Period size: 304 Copynumber: 2.8 Consensus size: 304
91779208 GGTATTCTAG
* * * * * * *
91779218 ATTATTCTTTCTTTCTACTGATTTCGTGCTGAATTACCTTGCAATCTTCTTTTTTTTTTTGCTGG
1 ATTATTCTTTCTTACTGCTGATTTTGTGTTGAACTACCTTGCAA------TTTTCTTTTTGTTGG
* * *
91779283 TCTTGGGTAAGTTTTGGTTCAAAGCTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATATTTC
60 TTTTGGGTAAATTTTGGTTCAAAACTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATATTTC
*
91779348 TATGTTATTAGTTTTATCTGCTTGGTACTTTGAGACTCTACAGTATAAATTGTATATCTGATGTG
125 TATGTTATTAGTTTTATCTGCTTGGTACTTTGAGACTCTACAGTATTAATTGTATATCTGATGTG
* *
91779413 AGTTTTACATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCGTTTTATTT
190 GGTTTTACATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTATTT
91779478 TTCGCTCTGCATGTTATTGCTGGTGAAAAGGGCCTTCCTTTTTATTCCAC
255 TTCGCTCTGCATGTTATTGCTGGTGAAAAGGGCCTTCCTTTTTATTCCAC
*
91779528 ATTATTCTTTCTTATTGCTGATTTTGTGTTGAACTACCTTGCAATTTTCTTTTTGTTGGTTTTGG
1 ATTATTCTTTCTTACTGCTGATTTTGTGTTGAACTACCTTGCAATTTTCTTTTTGTTGGTTTTGG
91779593 GTAAATTTTGGTTCAAAACTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATATTTCTATGTT
66 GTAAATTTTGGTTCAAAACTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATATTTCTATGTT
91779658 ATTAGTTTTATCTGCTTGGTACTTTGAGACTCTACAGTATTAATTGTATATCTGATGTGGGTTTT
131 ATTAGTTTTATCTGCTTGGTACTTTGAGACTCTACAGTATTAATTGTATATCTGATGTGGGTTTT
*
91779723 ACATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATTATTTTATTTTTCGCT
196 ACATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTATTTTTCGCT
91779788 CTGCATGTTATTGCTGGTGAAAAGGGCCTTCCTTTTTATTCCAC
261 CTGCATGTTATTGCTGGTGAAAAGGGCCTTCCTTTTTATTCCAC
91779832 ATTATTCTTTCTTACTGCTGATTTTGTGTTGAACTACCTTGCAATTTTCTTTTTGTTGGTTTTGG
1 ATTATTCTTTCTTACTGCTGATTTTGTGTTGAACTACCTTGCAATTTTCTTTTTGTTGGTTTTGG
* * * * *
91779897 GTAAATTTTGGTTCAAAACTAATTGGTTTGTAACTTTTGTTTTCTTTAAACTATATCTCTATCTT
66 GTAAATTTTGGTTCAAAACTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATATTTCTATGTT
* * * *
91779962 ATTAG-CTTATCTGCTTGGTACTTGGAGACTCTACA-TGATTAATTGTATTTCAGATGTGGGTTT
131 ATTAGTTTTATCTGCTTGGTACTTTGAGACTCTACAGT-ATTAATTGTATATCTGATGTGGGTTT
* * *
91780025 TGCATAATTTCTGCTAAGAACTTGGTTTTACTCAAATTTGGTTCTAAAATCATTTTATTT
195 TACATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTATTT
91780085 CATTCTAAAA
Statistics
Matches: 527, Mismatches: 29, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
302 1 0.00
303 108 0.20
304 380 0.72
310 38 0.07
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.49
Consensus pattern (304 bp):
ATTATTCTTTCTTACTGCTGATTTTGTGTTGAACTACCTTGCAATTTTCTTTTTGTTGGTTTTGG
GTAAATTTTGGTTCAAAACTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATATTTCTATGTT
ATTAGTTTTATCTGCTTGGTACTTTGAGACTCTACAGTATTAATTGTATATCTGATGTGGGTTTT
ACATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTATTTTTCGCT
CTGCATGTTATTGCTGGTGAAAAGGGCCTTCCTTTTTATTCCAC
Found at i:91780090 original size:21 final size:21
Alignment explanation
Indices: 91780066--91780106 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
91780056 TCAAATTTGG
91780066 TTCTAAAATCATTTTATTTCA
1 TTCTAAAATCATTTTATTTCA
91780087 TTCTAAAATCATTTTATTTC
1 TTCTAAAATCATTTTATTTC
91780107 TTCGCTCTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.54
Consensus pattern (21 bp):
TTCTAAAATCATTTTATTTCA
Found at i:91782477 original size:26 final size:26
Alignment explanation
Indices: 91782440--91782549 Score: 202
Period size: 26 Copynumber: 4.2 Consensus size: 26
91782430 TGATACAAAT
* *
91782440 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91782466 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91782492 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91782518 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91782544 TGATAA
1 TGATAA
91782550 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:91789563 original size:26 final size:26
Alignment explanation
Indices: 91789526--91789609 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
91789516 TGATACAAAT
* *
91789526 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91789552 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91789578 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91789604 TGATAA
1 TGATAA
91789610 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:91793010 original size:40 final size:40
Alignment explanation
Indices: 91792961--91793128 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
91792951 TCTTCGGAAT
* * *
91792961 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
91793000 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
91793040 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
91793080 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
91793120 TTAGCCCGG
1 TTAGCCCGG
91793129 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:91803252 original size:20 final size:22
Alignment explanation
Indices: 91803223--91803264 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
91803213 AACTAAAAAA
91803223 AAAAGAGAGG-GAAGAAAAATT
1 AAAAGAGAGGAGAAGAAAAATT
*
91803244 AAAA-AGAGGAGATGAAAAATT
1 AAAAGAGAGGAGAAGAAAAATT
91803265 TATTCAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.62, C:0.00, G:0.26, T:0.12
Consensus pattern (22 bp):
AAAAGAGAGGAGAAGAAAAATT
Found at i:91804296 original size:13 final size:13
Alignment explanation
Indices: 91804246--91804297 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
91804236 TAAAATTATG
91804246 TAGTGATAATATT
1 TAGTGATAATATT
*
91804259 TTGTGATAATATT
1 TAGTGATAATATT
*
91804272 TA--GA-ATTATT
1 TAGTGATAATATT
91804282 TAGTGATAATATT
1 TAGTGATAATATT
91804295 TAG
1 TAG
91804298 GAAAAATCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
10 7 0.22
11 2 0.06
12 2 0.06
13 21 0.66
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TAGTGATAATATT
Found at i:91805168 original size:20 final size:19
Alignment explanation
Indices: 91805145--91805194 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
91805135 TATCCATTTG
*
91805145 TTTTATTTTCGTAAATTTATT
1 TTTTATTTTCG--AATCTATT
*
91805166 TTTGCATTTTCGAATCTATT
1 TTT-TATTTTCGAATCTATT
91805186 TTTTATTTT
1 TTTTATTTT
91805195 ATTTTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 5 0.20
20 10 0.40
21 3 0.12
22 7 0.28
ACGTcount: A:0.20, C:0.08, G:0.06, T:0.66
Consensus pattern (19 bp):
TTTTATTTTCGAATCTATT
Found at i:91814953 original size:17 final size:17
Alignment explanation
Indices: 91814931--91814963 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
91814921 ATGTTATCTG
*
91814931 CCCGTGTGGCTCACACC
1 CCCGTGTGGCCCACACC
91814948 CCCGTGTGGCCCACAC
1 CCCGTGTGGCCCACAC
91814964 AGCCTGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.48, G:0.24, T:0.15
Consensus pattern (17 bp):
CCCGTGTGGCCCACACC
Found at i:91815166 original size:12 final size:12
Alignment explanation
Indices: 91815145--91815174 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
91815135 GTTATGGCAC
*
91815145 ACGGCGTACCAT
1 ACGGCCTACCAT
91815157 ACGGCCTACCAT
1 ACGGCCTACCAT
91815169 ACGGCC
1 ACGGCC
91815175 ATGTGGCGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.23, T:0.13
Consensus pattern (12 bp):
ACGGCCTACCAT
Found at i:91820114 original size:14 final size:14
Alignment explanation
Indices: 91820097--91820129 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
91820087 ATGTTTTAAA
91820097 GTTAATGATCAAAG
1 GTTAATGATCAAAG
91820111 GTTAATGATCAAAG
1 GTTAATGATCAAAG
91820125 GTTAA
1 GTTAA
91820130 AACCCTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (14 bp):
GTTAATGATCAAAG
Found at i:91820271 original size:10 final size:10
Alignment explanation
Indices: 91820256--91820285 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
91820246 AGGCAACCCA
91820256 TATTTATTTT
1 TATTTATTTT
91820266 TATTTA-TTT
1 TATTTATTTT
91820275 TATTTATTTT
1 TATTTATTTT
91820285 T
1 T
91820286 GAATTCTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
TATTTATTTT
Found at i:91821828 original size:23 final size:23
Alignment explanation
Indices: 91821802--91821846 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
91821792 GTAGTGATAA
*
91821802 TATTTAATGATGATATTAAGAAT
1 TATTTAATGATAATATTAAGAAT
* *
91821825 TATTTAGTGATAATATTTAGAA
1 TATTTAATGATAATATTAAGAA
91821847 AAAATCTAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.44
Consensus pattern (23 bp):
TATTTAATGATAATATTAAGAAT
Found at i:91822595 original size:50 final size:49
Alignment explanation
Indices: 91822536--91822637 Score: 161
Period size: 50 Copynumber: 2.1 Consensus size: 49
91822526 ACCAGGATTG
*
91822536 ACTACATAAGGAAAAGTTGGCGGTC-GGAACGTTCTTGGTCGCTATAACCA
1 ACTACATAAGGAAAAGTTGACGGTCAGG-ACGTTCTTGG-CGCTATAACCA
*
91822586 ACTACATAAGTAAAAGTTGACGGTCAGGACGTTCTTGGCGCTATAACCA
1 ACTACATAAGGAAAAGTTGACGGTCAGGACGTTCTTGGCGCTATAACCA
91822635 ACT
1 ACT
91822638 TATTGCTTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
49 14 0.29
50 33 0.67
51 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (49 bp):
ACTACATAAGGAAAAGTTGACGGTCAGGACGTTCTTGGCGCTATAACCA
Found at i:91825099 original size:50 final size:49
Alignment explanation
Indices: 91825034--91825168 Score: 184
Period size: 47 Copynumber: 2.8 Consensus size: 49
91825024 TACATGATGT
* *
91825034 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGGATACGTCAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAAACGTCAGA
* * * *
91825084 GTCAGTGTAAAACCATGTCTGGGACATGGCAT-TG-ACTAAACGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAACGTCAGA
*
91825131 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
91825169 TATACCCTAT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
47 38 0.51
48 3 0.04
49 3 0.04
50 30 0.41
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAACGTCAGA
Found at i:91830832 original size:64 final size:64
Alignment explanation
Indices: 91830751--91830876 Score: 207
Period size: 64 Copynumber: 2.0 Consensus size: 64
91830741 GTATAATAGA
* * * *
91830751 TACATGACCAATGACCTTTCATACTATATTGATAACATAAATTATTTTCACTCCTTAAAAAGTT
1 TACACGACCAATAACCTTTCATACTACATTGATAACATAAATTATTTCCACTCCTTAAAAAGTT
*
91830815 TACACGACCAATAACCTTTCATACTACATTGATAATATAAATTATTTCCACTCCTTAAAAAG
1 TACACGACCAATAACCTTTCATACTACATTGATAACATAAATTATTTCCACTCCTTAAAAAG
91830877 GATTCCTAAG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.35
Consensus pattern (64 bp):
TACACGACCAATAACCTTTCATACTACATTGATAACATAAATTATTTCCACTCCTTAAAAAGTT
Found at i:91835408 original size:28 final size:30
Alignment explanation
Indices: 91835376--91835432 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
91835366 ATATATTATG
*
91835376 TGTTAAA-AATAATTATAT-TAATTATATA
1 TGTTAAATAATAATGATATATAATTATATA
*
91835404 TGTTAAATAATAATGATATATATTTATAT
1 TGTTAAATAATAATGATATATAATTATAT
91835433 TTATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.28
29 10 0.40
30 8 0.32
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (30 bp):
TGTTAAATAATAATGATATATAATTATATA
Found at i:91837831 original size:30 final size:30
Alignment explanation
Indices: 91837740--91837824 Score: 134
Period size: 30 Copynumber: 2.8 Consensus size: 30
91837730 GACGCGGGCT
*
91837740 CATCAACAGCGTCCACACAATCACCAAGCC
1 CATCAACAGCGCCCACACAATCACCAAGCC
* *
91837770 CATCAACAGCGCTCATACAATCACCAAGCC
1 CATCAACAGCGCCCACACAATCACCAAGCC
*
91837800 CATCAACAGCGCCCACACAGTCACC
1 CATCAACAGCGCCCACACAATCACC
91837825 GGGCCCAACA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.35, C:0.44, G:0.11, T:0.11
Consensus pattern (30 bp):
CATCAACAGCGCCCACACAATCACCAAGCC
Found at i:91837908 original size:18 final size:18
Alignment explanation
Indices: 91837885--91837922 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
91837875 TGCCAGGTGA
*
91837885 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTTTAT
91837903 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTTTAT
91837921 GT
1 GT
91837923 TTTTTTCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.26, G:0.11, T:0.45
Consensus pattern (18 bp):
GTATCCTAACCCTTTTAT
Done.