Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 293 of 438
Found at i:91838222 original size:21 final size:21
Alignment explanation
Indices: 91838167--91838228 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
91838157 TAACACCCAT
* *
91838167 AACCA-AATCCCTTACCGGAGG
1 AACCATAATCCC-TGCCGAAGG
91838188 AACCATAATCCCTGCCGAAGG
1 AACCATAATCCCTGCCGAAGG
91838209 AACCATAATCCCTGCCGAAG
1 AACCATAATCCCTGCCGAAG
91838229 CAATCACAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 32 0.84
22 6 0.16
ACGTcount: A:0.34, C:0.34, G:0.18, T:0.15
Consensus pattern (21 bp):
AACCATAATCCCTGCCGAAGG
Found at i:91840537 original size:3 final size:3
Alignment explanation
Indices: 91840529--91840566 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
91840519 AGATATATAA
*
91840529 ATT ATT ATT ATT GTT ATT ATT AATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT A
91840567 AATTAAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:91840539 original size:22 final size:22
Alignment explanation
Indices: 91840514--91840561 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
91840504 TCTAAGATTT
91840514 TTATAAGATA-TATAAATTATTA
1 TTAT-AGATATTATAAATTATTA
* * *
91840536 TTATTGTTATTATTAATTATTA
1 TTATAGATATTATAAATTATTA
91840558 TTAT
1 TTAT
91840562 TATTAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (22 bp):
TTATAGATATTATAAATTATTA
Found at i:91840948 original size:19 final size:17
Alignment explanation
Indices: 91840924--91840960 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
91840914 TAGTTAAATG
91840924 ATAAAATAATACAAAGAAA
1 ATAAAAT-ATA-AAAGAAA
91840943 ATAAAATATAAAAGAAA
1 ATAAAATATAAAAGAAA
91840960 A
1 A
91840961 CAAAGAAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 3 0.17
19 7 0.39
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (17 bp):
ATAAAATATAAAAGAAA
Found at i:91844473 original size:126 final size:125
Alignment explanation
Indices: 91844085--91844586 Score: 727
Period size: 126 Copynumber: 4.0 Consensus size: 125
91844075 GCCAAATAGG
91844085 AACTACTGTAGAAAAAGAGCATCCACGTGAGAGC-TTTTTCAGTACTTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTACTTTTGCTGACAGTGCAT-C
* *
91844149 TACTTGAAGCATTTTTGACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTTAGA
65 TACTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * *
91844210 AACTACTGTAGAAAAAGAGCGTCCACATGAGAGCTTTTTTCAGTACTTTTGCTGACAGTTCATCT
1 AACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCT
* * * *
91844275 GCTTAAAGCATTTTTGACACTATTTGTTTAGAAATATCTTCTCAAAATTATTTTTTCAGA
66 ACTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * *
91844335 AACTACTGTAGAAAAAGAGCATCCCCGTGGGAGCTTTTTTCAATACTTTTGCTGACAGTGCATCT
1 AACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATC-
* * * * *
91844400 TACTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTTAAGATTATTTTTTCAAA
65 TACTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * * * * * * *
91844461 AACTATTATAGAAAAAAAACATCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCT
* *
91844526 AGCTTGAAGCATTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATCATTTTTTCAGA
66 A-CTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
91844587 TACGTCTTCT
Statistics
Matches: 334, Mismatches: 40, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
125 147 0.44
126 187 0.56
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (125 bp):
AACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCT
ACTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
Found at i:91844616 original size:27 final size:28
Alignment explanation
Indices: 91844576--91844641 Score: 125
Period size: 27 Copynumber: 2.4 Consensus size: 28
91844566 TCTCAAAATC
91844576 ATTTTTTCAGATACGTCTTCTCTAATTT
1 ATTTTTTCAGATACGTCTTCTCTAATTT
91844604 ATTTTTT-AGATACGTCTTCTCTAATTT
1 ATTTTTTCAGATACGTCTTCTCTAATTT
91844631 ATTTTTTCAGA
1 ATTTTTTCAGA
91844642 AACTACTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 27 0.73
28 10 0.27
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.55
Consensus pattern (28 bp):
ATTTTTTCAGATACGTCTTCTCTAATTT
Found at i:91865628 original size:127 final size:126
Alignment explanation
Indices: 91865291--91865748 Score: 632
Period size: 126 Copynumber: 3.6 Consensus size: 126
91865281 TAAGGCCAAG
* * * * *
91865291 CAGGAACTATTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTCTTCAGTAATTTTGCTGACAATGA
1 CAGGAACTATTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * *
91865356 ATCCTGTTTAAAGCGTTTTTGACACTATTTTTTCAGAA-TCGTCTTCTCAAAAGTATTTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACT-GTCTTCTCAAAATTATTTTTT
* * *
91865417 CAGGAACTATTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTAAAAGTCC
1 CAGGAACTATTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * *
91865482 ATCCTGCTTGAAGCATTTTTTACATTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTT
* * *
91865543 CAGGAACTACTGTAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCTAGTAATTTTGTTGACAGTG
1 CAGGAACTATTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTC-AGTAATTTTGCTGACAGTG
* ** *
91865608 CATCCTACTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATTTTCTCAAAATTATTTTTT
65 CATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTT
* * * * * *
91865670 -AGGAACTATTGTAGAAAAAGAGCGTTCATATGTGAGCTTTTTTTAGTAATTTTGCTGATAGTAC
1 CAGGAACTATTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
*
91865734 ATCTTGCTTGAAGCG
66 ATCCTGCTTGAAGCG
91865749 GAACTGTCTT
Statistics
Matches: 292, Mismatches: 38, Indels: 5
0.87 0.11 0.01
Matches are distributed among these distances:
125 30 0.10
126 191 0.65
127 71 0.24
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (126 bp):
CAGGAACTATTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTT
Found at i:91865919 original size:34 final size:34
Alignment explanation
Indices: 91865876--91866005 Score: 110
Period size: 34 Copynumber: 3.9 Consensus size: 34
91865866 CTAAACACAA
*
91865876 AATTATTTTAAAAAAACTAAACCCTAATTTAATT
1 AATTTTTTTAAAAAAACTAAACCCTAATTTAATT
** *
91865910 AATTTTTTTAAAAACTCTGAAA-ACTAATTTAATT
1 AATTTTTTTAAAAAAACT-AAACCCTAATTTAATT
* *** *
91865944 AATTTGTTTAAAACTCCTAAAACCTAA--T--TT
1 AATTTTTTTAAAAAAACTAAACCCTAATTTAATT
91865974 -ATTTTTTTAAAAAAATTCTAAACCCTAATTTA
1 AATTTTTTTAAAAAAA--CTAAACCCTAATTTA
91866006 TTTTTTAAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
29 11 0.15
30 2 0.03
31 10 0.13
32 1 0.01
33 4 0.05
34 44 0.59
35 3 0.04
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.42
Consensus pattern (34 bp):
AATTTTTTTAAAAAAACTAAACCCTAATTTAATT
Found at i:91868994 original size:19 final size:20
Alignment explanation
Indices: 91868954--91868997 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
91868944 GAAAACTTTC
91868954 TTTAAAGTTTTGTTAAAAGTT
1 TTTAAAGTTTTGTT-AAAGTT
*
91868975 TTTAAGGTTTTGTT-AAGTT
1 TTTAAAGTTTTGTTAAAGTT
91868994 TTTA
1 TTTA
91868998 TGAAAAATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
21 13 0.59
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (20 bp):
TTTAAAGTTTTGTTAAAGTT
Found at i:91871509 original size:27 final size:28
Alignment explanation
Indices: 91871425--91871494 Score: 79
Period size: 31 Copynumber: 2.4 Consensus size: 28
91871415 GATTGAATCA
* *
91871425 AAATTAAAATTTCATGTATAT-ATTAGAACC
1 AAATCAAAGTTTCATGTATATAATT-G--CC
91871455 ACAATCAAAGTTTCATGTATATAATTGCC
1 A-AATCAAAGTTTCATGTATATAATTGCC
91871484 AAATCAAAGTT
1 AAATCAAAGTT
91871495 CTTGTATCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
28 10 0.28
29 3 0.08
30 1 0.03
31 19 0.53
32 3 0.08
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.34
Consensus pattern (28 bp):
AAATCAAAGTTTCATGTATATAATTGCC
Found at i:91877777 original size:78 final size:77
Alignment explanation
Indices: 91877508--91877777 Score: 346
Period size: 79 Copynumber: 3.5 Consensus size: 77
91877498 AATTGTATTC
* * * ** *
91877508 TGTTTCAAACAGAAATTCAATTGAACAATCCTGTTTCAGGA-TTTATTCTTGTTGTTTAATAGGA
1 TGTTTCAAATAGAAA-TCAATTGAACAATTCTGTTTCAGGATTTTATTCCTGTCATTTAACAGGA
*
91877572 TTTGTTTAATTTT
65 TTTGTTTGATTTT
* * *
91877585 TGTTTCAAACAAAAAATCAATTGAACAATTCTGTTTTAGGATTTTATTCCTGTCAATTTAACAGG
1 TGTTTCAAA-TAGAAATCAATTGAACAATTCTGTTTCAGGATTTTATTCCTGTC-ATTTAACAGG
* *
91877650 ATTTATTAGATTTT
64 ATTTGTTTGATTTT
*
91877664 TGTTTTAAATAGAAAATCAATTGAACAAATT-TGTTTCAGGATTTTATTCCTGTCATTTAACAGG
1 TGTTTCAAATAG-AAATCAATTGAAC-AATTCTGTTTCAGGATTTTATTCCTGTCATTTAACAGG
91877728 ATTTGTTTGATTTTT
64 ATTTGTTTGA-TTTT
*
91877743 TGTTTCAAATAGAAATCAATTGAATAATTCTGTTT
1 TGTTTCAAATAGAAATCAATTGAACAATTCTGTTT
91877778 AAGAATTCTT
Statistics
Matches: 167, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
77 36 0.22
78 50 0.30
79 77 0.46
80 4 0.02
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.45
Consensus pattern (77 bp):
TGTTTCAAATAGAAATCAATTGAACAATTCTGTTTCAGGATTTTATTCCTGTCATTTAACAGGAT
TTGTTTGATTTT
Found at i:91877815 original size:78 final size:78
Alignment explanation
Indices: 91877508--91877818 Score: 281
Period size: 78 Copynumber: 4.0 Consensus size: 78
91877498 AATTGTATTC
* * * * * *** *
91877508 TGTTTCAAACAGAAATTCAATTGAACAATCCTGTTTCAGGA-TTTATTCTTGTTGTTTAATAGGA
1 TGTTTCAAATAGAAA-TCAATTGAAAAATTCTGTTTAAGGATTTTATTCCTGCCATTTAACAGGA
* *
91877572 TTTGTTT-AATTTT
65 TTTATTTGATTTTT
* * * * *
91877585 TGTTTCAAACAAAAAATCAATTGAACAATTCTGTTTTAGGATTTTATTCCTGTCAATTTAACAGG
1 TGTTTCAAA-TAGAAATCAATTGAAAAATTCTGTTTAAGGATTTTATTCCTG-CCATTTAACAGG
*
91877650 ATTTATTAGA-TTTT
64 ATTTATTTGATTTTT
* * *
91877664 TGTTTTAAATAGAAAATCAATTGAACAAATT-TGTTTCAGGATTTTATTCCTGTCATTTAACAGG
1 TGTTTCAAATAG-AAATCAATTGAA-AAATTCTGTTTAAGGATTTTATTCCTGCCATTTAACAGG
*
91877728 ATTTGTTTGATTTTT
64 ATTTATTTGATTTTT
* * * * * **
91877743 TGTTTCAAATAGAAATCAATTGAATAATTCTGTTTAAGAATTCTT-TTTCTGCCGTTCAACAAAA
1 TGTTTCAAATAGAAATCAATTGAAAAATTCTGTTTAAGGATT-TTATTCCTGCCATTTAACAGGA
91877807 TTTATTTGATTT
65 TTTATTTGATTT
91877819 CTGTTGTTAC
Statistics
Matches: 194, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
77 36 0.19
78 78 0.40
79 75 0.39
80 5 0.03
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (78 bp):
TGTTTCAAATAGAAATCAATTGAAAAATTCTGTTTAAGGATTTTATTCCTGCCATTTAACAGGAT
TTATTTGATTTTT
Found at i:91879660 original size:22 final size:22
Alignment explanation
Indices: 91879631--91879697 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
91879621 GGCACTAATG
91879631 AACAGAGAGCACTAAGGTGCTA
1 AACAGAGAGCACTAAGGTGCTA
* * **
91879653 TACAGAGAGCACAAATATGCTA
1 AACAGAGAGCACTAAGGTGCTA
** *
91879675 AATGGAAAGCACTAAGGTGCTA
1 AACAGAGAGCACTAAGGTGCTA
91879697 A
1 A
91879698 TATTCAGAGA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAGGTGCTA
Found at i:91888943 original size:15 final size:16
Alignment explanation
Indices: 91888911--91888943 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
91888901 GATTCAAAAT
91888911 TTTATTTTACATTAATG
1 TTTATTTTACA-TAATG
91888928 TTTATTTTAC-TAATG
1 TTTATTTTACATAATG
91888943 T
1 T
91888944 GGATGCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (16 bp):
TTTATTTTACATAATG
Found at i:91891408 original size:116 final size:116
Alignment explanation
Indices: 91891209--91891420 Score: 300
Period size: 116 Copynumber: 1.8 Consensus size: 116
91891199 TGTCGAATGT
* * * * * *
91891209 AACTTGTGCCAAGCGATGAGACAGAGAGGGTATCTGTATGCCTAGGAAGAGACCGAAATGGTGGC
1 AACTTGTGCCAAGCGATGAGACAAAAAGGGTATCTATATGCCTAAGAAGACACCGAAAGGGTGGC
* * **
91891274 TTAGGTGGTATTTTTTAGTGAAGATGAGACCGAGGGTATCCTGTCGAACAC
66 TTACGTGGTAATCCTTAGTGAAGATGAGACCGAGGGTATCCTGTCGAACAC
*
91891325 AACTTGTGCCAAGCGATGAGACAAAAAGGGTAT-TCATATGCCTAAGAAGACACCGAGAGGGTGG
1 AACTTGTGCCAAGCGATGAGACAAAAAGGGTATCT-ATATGCCTAAGAAGACACCGAAAGGGTGG
*
91891389 CTTACGTGGTAATCCTTAGTGAATATGAGACC
65 CTTACGTGGTAATCCTTAGTGAAGATGAGACC
91891421 AAGATGGTAT
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
115 1 0.01
116 82 0.99
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.23
Consensus pattern (116 bp):
AACTTGTGCCAAGCGATGAGACAAAAAGGGTATCTATATGCCTAAGAAGACACCGAAAGGGTGGC
TTACGTGGTAATCCTTAGTGAAGATGAGACCGAGGGTATCCTGTCGAACAC
Found at i:91895969 original size:21 final size:20
Alignment explanation
Indices: 91895932--91895972 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
91895922 TATAAGGTTG
91895932 AATTGTATATGTGTGTGTTT
1 AATTGTATATGTGTGTGTTT
91895952 AATTGTAGTATGCT-TGTGTTT
1 AATTGTA-TATG-TGTGTGTTT
91895973 GAACGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 11 0.58
22 1 0.05
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.54
Consensus pattern (20 bp):
AATTGTATATGTGTGTGTTT
Found at i:91901259 original size:13 final size:13
Alignment explanation
Indices: 91901241--91901265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91901231 GTATTACAAA
91901241 TTTAAAACCCAAG
1 TTTAAAACCCAAG
91901254 TTTAAAACCCAA
1 TTTAAAACCCAA
91901266 TACACAGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (13 bp):
TTTAAAACCCAAG
Found at i:91904248 original size:29 final size:28
Alignment explanation
Indices: 91904204--91904264 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
91904194 CTATAACTGT
91904204 ATATATATTATATATAATAAAACCCACAC
1 ATATATATTATATATAATAAAA-CCACAC
* * *
91904233 ATATATATTATGTATATTAGAACCACAC
1 ATATATATTATATATAATAAAACCACAC
91904261 ATAT
1 ATAT
91904265 TTATGTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 10 0.34
29 19 0.66
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.34
Consensus pattern (28 bp):
ATATATATTATATATAATAAAACCACAC
Found at i:91912708 original size:28 final size:29
Alignment explanation
Indices: 91912581--91912810 Score: 214
Period size: 29 Copynumber: 8.0 Consensus size: 29
91912571 CATTACTGGC
* ** *
91912581 GATCTCTGTTAAATGGAATTCTTTGTGGT
1 GATCTCTATTAAATGGAAGCCTTTGTGGA
* * * * *
91912610 TATCTATATTAAATGAAAGCGTTAGTGGCA
1 GATCTCTATTAAATGGAAGCCTTTGTGG-A
* * * * *
91912640 -ATCTTTGTTAAATGGAAGCCTTTATAGT
1 GATCTCTATTAAATGGAAGCCTTTGTGGA
**
91912668 GATCTCTATTAAATAAAAGCC-TTGTGGA
1 GATCTCTATTAAATGGAAGCCTTTGTGGA
*
91912696 GATCTCTATTAAATGGAAGCCTTCT-TAGA
1 GATCTCTATTAAATGGAAGCCTT-TGTGGA
*
91912725 CATCTCTATTAAATGGAAGCCTTTGTGGA
1 GATCTCTATTAAATGGAAGCCTTTGTGGA
* * *
91912754 GGTCTCTATTAAATGGAAGCCTTTATGGT
1 GATCTCTATTAAATGGAAGCCTTTGTGGA
* *
91912783 GATCTCTATTAAATGGATGCCCTTGTGG
1 GATCTCTATTAAATGGAAGCCTTTGTGG
91912811 CTATCTTAAC
Statistics
Matches: 159, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
28 24 0.15
29 134 0.84
30 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (29 bp):
GATCTCTATTAAATGGAAGCCTTTGTGGA
Found at i:91912799 original size:58 final size:58
Alignment explanation
Indices: 91912581--91912797 Score: 242
Period size: 58 Copynumber: 3.8 Consensus size: 58
91912571 CATTACTGGC
* ** * * * * * *
91912581 GATCTCTGTTAAATGGAATTCTTTGTGGTTATCTATATTAAATGAAAGCGTTAGTGGCA
1 GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATGAAAGCCTTTGTGG-A
* * *
91912640 -ATCTTTGTTAAATGGAAGCCTTTATAGTGATCTCTATTAAATAAAAGCC-TTGTGGA
1 GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATGAAAGCCTTTGTGGA
** *
91912696 GATCTCTATTAAATGGAAGCCTTCT-TAGACATCTCTATTAAATGGAAGCCTTTGTGGA
1 GATCTCTATTAAATGGAAGCCTT-TATAGTGATCTCTATTAAATGAAAGCCTTTGTGGA
* *
91912754 GGTCTCTATTAAATGGAAGCCTTTATGGTGATCTCTATTAAATG
1 GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATG
91912798 GATGCCCTTG
Statistics
Matches: 134, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
56 1 0.01
57 47 0.35
58 86 0.64
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.37
Consensus pattern (58 bp):
GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATGAAAGCCTTTGTGGA
Found at i:91916603 original size:29 final size:30
Alignment explanation
Indices: 91916546--91916647 Score: 124
Period size: 29 Copynumber: 3.5 Consensus size: 30
91916536 TACCTGTATC
* *
91916546 TGGCCCATTAAGCCC-AATCATATTC-ATA
1 TGGCCCATTAGGCCCAAATCACATTCGATA
* *
91916574 TGGCCCATTAGGCTCTAATCAC-TT-GTATA
1 TGGCCCATTAGGCCCAAATCACATTCG-ATA
91916603 TGGCCCATTAGGCCCAAATCACATTCG-TA
1 TGGCCCATTAGGCCCAAATCACATTCGATA
91916632 TGGCCCATTAGGCCCA
1 TGGCCCATTAGGCCCA
91916648 GTAACATTCA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
28 15 0.23
29 46 0.72
30 2 0.03
31 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (30 bp):
TGGCCCATTAGGCCCAAATCACATTCGATA
Found at i:91924646 original size:131 final size:131
Alignment explanation
Indices: 91924225--91924805 Score: 477
Period size: 131 Copynumber: 4.5 Consensus size: 131
91924215 AGATCGTAGG
* * * * *
91924225 CTAAGTTTATTCGATTTAATATCATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTGCT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * * * * * * * * *
91924290 CTACA-AACTCGCTGATTTAAGATCGCAGCTGATATCGTTAAGGCTCGCTGATTTAATATCGCAA
66 CCAAACAACTTGTTGATTTAAGATCGCAACAGATATCATTAAGACTCGCTGATTTAAAATCACAA
91924354 C
131 C
* ** * * * * * * *
91924355 CTAAATTCATTTGACTTAATATCATGAACAATTTTCCTTGAGATAGTTGATTCAATATAGCTACC
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * * * * * * * * * * *
91924420 CCAAATAGCTCGCTAATTTAAGATCACAGTA-AAAAAT-GTTAAGGCTCGCTAATTT--AGT---
66 CCAAACAACTTGTTGATTTAAGATCGCA--ACAGATATCATTAAGACTCGCTGATTTAAAATCAC
91924478 ---
129 AAC
* * * * *
91924478 CTAAGTTCATTCGATTTAATATTATGAACAATTTTCTTTGAGATAGCTCATTTAATATTGCTGCT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * * * * * * *
91924543 CCAAACAACTTGTTGATTTAGGATCGTAGA-TGATATCGTTAA-AGTTTGCTGATTTAAGATCGC
66 CCAAACAACTTGTTGATTTAAGATCGCA-ACAGATATCATTAAGA-CTCGCTGATTTAAAATCAC
*
91924606 AGC
129 AAC
*
91924609 CTAAGTTCATTCAATTTAATATCATGAGCAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * * *
91924674 CCAAACAACTTGTTGATTTAATATTGCAACAGATATCATTAAGACTCGTTGATTTAAAATTACAA
66 CCAAACAACTTGTTGATTTAAGATCGCAACAGATATCATTAAGACTCGCTGATTTAAAATCACAA
91924739 C
131 C
* * * * * *
91924740 CTAAGTTCATTAAATTTAATATCATGAACAATTTTCTTAGAGTTAGTTGATTCAATATCGCTACT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
91924805 C
66 C
91924806 TAAATAGCTC
Statistics
Matches: 356, Mismatches: 80, Indels: 29
0.77 0.17 0.06
Matches are distributed among these distances:
122 4 0.01
123 87 0.24
125 1 0.00
129 1 0.00
130 56 0.16
131 203 0.57
132 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (131 bp):
CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
CCAAACAACTTGTTGATTTAAGATCGCAACAGATATCATTAAGACTCGCTGATTTAAAATCACAA
C
Found at i:91924937 original size:95 final size:95
Alignment explanation
Indices: 91924735--91924957 Score: 277
Period size: 95 Copynumber: 2.3 Consensus size: 95
91924725 ATTTAAAATT
* * * *
91924735 ACAACCTAAGTTCATTAAATTTAATATCATGAACAATTTTCTTAGAGTTAGTTGATTCAATATCG
1 ACAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTAGAGTTAGCTGATTCAATATCA
* * *
91924800 CTACTCTAAATAGCTCAATGATTTAATATC
66 CTACTCTAAATAGCTCAATAATATAAGATC
* ** *
91924830 GCAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTTAGTTAGCTGATTTAATATCA
1 ACAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTAGAGTTAGCTGATTCAATATCA
**
91924895 CTACTCTAAATAGCTCGCTAATATAAGATC
66 CTACTCTAAATAGCTCAATAATATAAGATC
* * * *
91924925 AC-AGCTTTAGTTCATTCGATTTAACATCATGAA
1 ACAATC-TAAGTTCATTCAATTTAATATCATGAA
91924958 TGATCTCATT
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
94 2 0.02
95 107 0.98
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (95 bp):
ACAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTAGAGTTAGCTGATTCAATATCA
CTACTCTAAATAGCTCAATAATATAAGATC
Found at i:91926330 original size:54 final size:54
Alignment explanation
Indices: 91926267--91926374 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
91926257 TCTTCGCTAC
91926267 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTATTTG
1 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTATTTG
*
91926321 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTGTTTCTTTCTACTATTTG
1 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTATTTG
91926375 CACTTCTTTC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (54 bp):
TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTATTTG
Found at i:91928840 original size:38 final size:35
Alignment explanation
Indices: 91928794--91928881 Score: 112
Period size: 31 Copynumber: 2.5 Consensus size: 35
91928784 GGGCCGTAGC
91928794 CCTTTTCATATTTCATATTTCATAATACTGGGCCGAAA
1 CCTTTTCATATTTCATATTT-AT--TACTGGGCCGAAA
*
91928832 CCTTTTCATATTTC--A--TATTACTGGGCCGAAG
1 CCTTTTCATATTTCATATTTATTACTGGGCCGAAA
91928863 CCTTTTCATATTTCATATT
1 CCTTTTCATATTTCATATT
91928882 ACTGGGCCGA
Statistics
Matches: 45, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
31 26 0.58
33 3 0.07
34 1 0.02
36 1 0.02
38 14 0.31
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (35 bp):
CCTTTTCATATTTCATATTTATTACTGGGCCGAAA
Found at i:91928842 original size:31 final size:31
Alignment explanation
Indices: 91928804--91928898 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
91928794 CCTTTTCATA
* *
91928804 TTTCATATTTCATAATACTGGGCCGAAACCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91928835 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91928866 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91928897 TT
1 TT
91928899 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:91929141 original size:24 final size:24
Alignment explanation
Indices: 91929090--91929256 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
91929080 GCTTTATCAT
* *
91929090 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
91929115 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
91929139 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
91929162 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
91929186 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
91929210 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
91929234 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
91929257 TCATTTCCTC
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:91929190 original size:71 final size:71
Alignment explanation
Indices: 91929089--91929256 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
91929079 TGCTTTATCA
*
91929089 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
91929153 AGCCCTTT
64 AGCCCTTT
* * **
91929161 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
91929226 CCCTTT
66 CCCTTT
*
91929232 TGATAATTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
91929257 TCATTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 53 0.60
72 35 0.40
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:91929332 original size:20 final size:20
Alignment explanation
Indices: 91929307--91929366 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
91929297 TATGATTACC
91929307 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
91929327 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
91929347 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
91929367 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:91930676 original size:27 final size:27
Alignment explanation
Indices: 91930614--91930678 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
91930604 GGGCATATTC
91930614 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
91930641 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
91930668 GTCTTTTTACC
1 GTCATTTTACC
91930679 TTTTAGGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:91930761 original size:27 final size:26
Alignment explanation
Indices: 91930731--91930786 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
91930721 GTAAATCAAC
*
91930731 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
91930758 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
91930784 AAA
1 AAA
91930787 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:91930878 original size:27 final size:27
Alignment explanation
Indices: 91930739--91931435 Score: 257
Period size: 27 Copynumber: 25.8 Consensus size: 27
91930729 ACAAACCAAA
* * * * *
91930739 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTATAAATCGAG
* ** * *
91930766 GGTACTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCGGTAA-TTTTATAAA-TCGAG
* * *
91930795 GGTATTTCTGTAACTTTGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
91930822 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*
91930849 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * * *
91930876 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * *
91930903 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
91930930 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
91930957 GGTAAAACGGTAATTCTGTAAGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
91930984 GGTAAAACGATAATTATGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** * * *
91931011 GGTAAAACGGTAATTATGTAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** *
91931038 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * * *
91931065 GGTAAAAT-AGTAATTCTGTAAA-CTGAG
1 GGT-ATTTCGGTAATTTTATAAATC-GAG
*** *
91931092 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
91931119 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
91931146 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
91931173 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTATAAATCGAG
** * **
91931200 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * * *
91931227 GGTATTTCAGTAATTTCACAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
91931254 GGTATTTTGGTAATTTTACAAA-CTAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * *
91931280 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * * *
91931307 GGTATTTTGATAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
91931334 GGTATTTTGGTAATTTTACAAA-CCAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
91931361 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * *
91931388 GGTATTTTAGTAATTTTACAAAGC-AG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
91931414 GGTATTTTGGTAATTTTGTAAA
1 GGTATTTCGGTAATTTTATAAA
91931436 CCAAAGTATT
Statistics
Matches: 575, Mismatches: 78, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
26 57 0.10
27 483 0.84
28 21 0.04
29 14 0.02
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATCGAG
Found at i:91930889 original size:54 final size:54
Alignment explanation
Indices: 91930856--91931176 Score: 432
Period size: 54 Copynumber: 5.9 Consensus size: 54
91930846 GAGGGTATTT
* * *
91930856 CGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * *
91930910 CAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * * * *
91930964 CGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA-GGGTAAAA
* *
91931018 CGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
** *
91931072 TAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
**
91931126 CGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
91931177 CTTTGGTAAT
Statistics
Matches: 234, Mismatches: 27, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
53 2 0.01
54 229 0.98
55 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (54 bp):
CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
Found at i:91931187 original size:81 final size:81
Alignment explanation
Indices: 91930856--91931176 Score: 423
Period size: 81 Copynumber: 4.0 Consensus size: 81
91930846 GAGGGTATTT
* * * * * *
91930856 CGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTA
1 CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
91930921 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
91930937 CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
1 CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
91931002 TAAATC-AGGGGTAAAA
66 TAAATCGA-GGGTAAAA
* * * **
91931018 CGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCT
1 CGGTAATTCTATAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCT
*
91931082 GTAAA-CTGAGGGTAAAA
65 ATAAATC-GAGGGTAAAA
* *
91931099 CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTA
1 CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
91931164 TAAATCGAGGGTA
66 TAAATCGAGGGTA
91931177 CTTTGGTAAT
Statistics
Matches: 208, Mismatches: 26, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
80 3 0.01
81 202 0.97
82 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (81 bp):
CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:91931322 original size:107 final size:108
Alignment explanation
Indices: 91931171--91931430 Score: 305
Period size: 107 Copynumber: 2.4 Consensus size: 108
91931161 CTATAAATCG
* * * ** **
91931171 AGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCGA-GGGTATTT
1 AGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACA-AACGAGGGGTATTT
** *
91931234 CAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAA-CT
64 CAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
* **
91931278 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACGAGGGGTATTTCA
* *
91931343 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
66 GTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
* *
91931386 AGGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGATAATTTT
91931431 GTAAACCAAA
Statistics
Matches: 132, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
106 2 0.02
107 100 0.76
108 29 0.22
109 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (108 bp):
AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACGAGGGGTATTTCA
GTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
Found at i:91932742 original size:45 final size:45
Alignment explanation
Indices: 91932678--91932764 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
91932668 CCAAAACATG
**
91932678 TGTCACATATATCATGAACTCAGTCCACAACTCAATGAGTTCGGA
1 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTCGGA
* *
91932723 TGTCACATATATCATGAACTCAAACCACTACTGAATGAGTTC
1 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTC
91932765 TAATTACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTCGGA
Found at i:91937813 original size:15 final size:15
Alignment explanation
Indices: 91937793--91937823 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
91937783 ATTTTTACTG
91937793 TTATTTTGATTTTAA
1 TTATTTTGATTTTAA
*
91937808 TTATTTTTATTTTAA
1 TTATTTTGATTTTAA
91937823 T
1 T
91937824 AAGATTTCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTATTTTGATTTTAA
Found at i:91938618 original size:16 final size:18
Alignment explanation
Indices: 91938592--91938624 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
91938582 AAAACCTTGA
91938592 AAATAAACCA-TTCAAAT
1 AAATAAACCATTTCAAAT
91938609 AAAT-AACCATTTCAAA
1 AAATAAACCATTTCAAA
91938625 ATTTCAGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATAAACCATTTCAAAT
Found at i:91945950 original size:6 final size:6
Alignment explanation
Indices: 91945939--91945965 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
91945929 TCTGATTGTA
91945939 TTACTG TTACTG TTACTG TTACTG TTA
1 TTACTG TTACTG TTACTG TTACTG TTA
91945966 TCGTATTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.52
Consensus pattern (6 bp):
TTACTG
Found at i:91950402 original size:40 final size:40
Alignment explanation
Indices: 91950345--91950508 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
91950335 TGAATGATAC
* * * *
91950345 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
91950385 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
91950425 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
91950465 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
91950505 CCGG
1 CCGG
91950509 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:91958337 original size:63 final size:63
Alignment explanation
Indices: 91958259--91958389 Score: 244
Period size: 63 Copynumber: 2.1 Consensus size: 63
91958249 TGTTTCTTGC
91958259 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
1 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
*
91958322 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTTTATTAAAAATTCA
1 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
*
91958385 ATCTT
1 TTCTT
91958390 TTATCTTTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.19, C:0.20, G:0.09, T:0.52
Consensus pattern (63 bp):
TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
Found at i:91960480 original size:22 final size:22
Alignment explanation
Indices: 91960452--91960493 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
91960442 TCTTCATGGA
*
91960452 ATAGTATACGAAGCGCCATAGC
1 ATAGTATACGAAGCACCATAGC
91960474 ATAGTATACGAAGCACCATA
1 ATAGTATACGAAGCACCATA
91960494 CTCCTATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19
Consensus pattern (22 bp):
ATAGTATACGAAGCACCATAGC
Found at i:91966574 original size:23 final size:23
Alignment explanation
Indices: 91966543--91966611 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
91966533 CCTCTAGGGA
* *
91966543 ATTATAGAATATGCCACAAAGGT
1 ATTACAGAATATGCCACAAAGGC
* *
91966566 TTTACAGAATATGCCACAAATGC
1 ATTACAGAATATGCCACAAAGGC
* *
91966589 ATTACAAAATATGCCTCAAAGGC
1 ATTACAGAATATGCCACAAAGGC
91966612 TTAGAATAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (23 bp):
ATTACAGAATATGCCACAAAGGC
Found at i:91972195 original size:10 final size:9
Alignment explanation
Indices: 91972182--91972233 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 9
91972172 TGATATATAT
91972182 ACTTATATTA
1 ACTTA-ATTA
91972192 ACTTTAATTA
1 AC-TTAATTA
*
91972202 ATCTTAGTTA
1 A-CTTAATTA
91972212 ACTTAATTAA
1 ACTTAATT-A
91972222 ACTATAATTA
1 ACT-TAATTA
91972232 AC
1 AC
91972234 ATTTCTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
9 6 0.17
10 21 0.58
11 9 0.25
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (9 bp):
ACTTAATTA
Found at i:91972232 original size:20 final size:20
Alignment explanation
Indices: 91972182--91972233 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
91972172 TGATATATAT
91972182 ACTTATATTAACTTTAATTAA
1 ACTTA-ATTAACTTTAATTAA
* *
91972203 TCTTAGTTAAC-TTAATTAA
1 ACTTAATTAACTTTAATTAA
91972222 ACTATAATTAAC
1 ACT-TAATTAAC
91972234 ATTTCTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 10 0.38
20 12 0.46
21 4 0.15
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (20 bp):
ACTTAATTAACTTTAATTAA
Found at i:91974187 original size:6 final size:6
Alignment explanation
Indices: 91974178--91974212 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
91974168 ATTGAAATGT
91974178 CATATG CATATG CATATG CATATG CATATG CATAT
1 CATATG CATATG CATATG CATATG CATATG CATAT
91974213 AATAGAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (6 bp):
CATATG
Found at i:91986648 original size:50 final size:50
Alignment explanation
Indices: 91986583--91986731 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
91986573 AAATTTAATA
*
91986583 AATTTATTATTTTTATAAACTTCATTCATGATCATGTTAATAATATTTTT
1 AATTTATTATTTTTATAAACTTCATTTATGATCATGTTAATAATATTTTT
* * *
91986633 AATTTATTATTTTTATAAGCTTTATTTATGATCTTGTTAATAATATTTTT
1 AATTTATTATTTTTATAAACTTCATTTATGATCATGTTAATAATATTTTT
* * * *
91986683 AATTTGTTATTTTTATAAATTTCATTTATCATCGTGTTAATAATATTTT
1 AATTTATTATTTTTATAAACTTCATTTATGATCATGTTAATAATATTTT
91986732 CAATAAAAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 89 1.00
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (50 bp):
AATTTATTATTTTTATAAACTTCATTTATGATCATGTTAATAATATTTTT
Found at i:91987561 original size:16 final size:16
Alignment explanation
Indices: 91987542--91987592 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
91987532 GAAGTTGACC
91987542 AAAATAGAAATGATCT
1 AAAATAGAAATGATCT
* * * *
91987558 AAAACATAAGTGA-CC
1 AAAATAGAAATGATCT
91987573 AAAATAGAAATGATCT
1 AAAATAGAAATGATCT
91987589 AAAA
1 AAAA
91987593 CGTTAGTGGC
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.59, C:0.10, G:0.12, T:0.20
Consensus pattern (16 bp):
AAAATAGAAATGATCT
Found at i:91987792 original size:17 final size:16
Alignment explanation
Indices: 91987747--91987795 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
91987737 ATTATTTCAA
*
91987747 TTTAATCACTAAATTT
1 TTTAATCACTAAATAT
* *
91987763 TTTAA-AATTAAATAT
1 TTTAATCACTAAATAT
91987778 TTTAATCACTCAAATAT
1 TTTAATCACT-AAATAT
91987795 T
1 T
91987796 AATCGCTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 12 0.46
16 7 0.27
17 7 0.27
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTAATCACTAAATAT
Found at i:91989935 original size:28 final size:28
Alignment explanation
Indices: 91989886--91989947 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
91989876 AATAATCAAT
*
91989886 TACAGTATGGGGCCTGAGCCCATTACAGA
1 TACAGTATGGGCCCTGAGCCCATT-CAGA
* *
91989915 TTCAGTTTGGGCCCTG-GCCCATTCAGA
1 TACAGTATGGGCCCTGAGCCCATTCAGA
91989942 TACAGT
1 TACAGT
91989948 CTCAAATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 9 0.31
28 7 0.24
29 13 0.45
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (28 bp):
TACAGTATGGGCCCTGAGCCCATTCAGA
Found at i:91990741 original size:26 final size:26
Alignment explanation
Indices: 91990704--91990839 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
91990694 TGATACAAAT
* *
91990704 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91990730 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
91990756 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91990782 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91990808 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91990834 TGATAA
1 TGATAA
91990840 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:91993578 original size:33 final size:33
Alignment explanation
Indices: 91993536--91993601 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
91993526 TTTTTCCCTG
91993536 AAACTAGACTCATATGTCCATCTACATATTTTT
1 AAACTAGACTCATATGTCCATCTACATATTTTT
91993569 AAACTAGACTCATATGTCCATCTACATATTTTT
1 AAACTAGACTCATATGTCCATCTACATATTTTT
91993602 TCTTAGAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.39
Consensus pattern (33 bp):
AAACTAGACTCATATGTCCATCTACATATTTTT
Found at i:91994811 original size:37 final size:37
Alignment explanation
Indices: 91994760--91994879 Score: 222
Period size: 37 Copynumber: 3.2 Consensus size: 37
91994750 TTATCACGAA
*
91994760 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
91994797 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
91994834 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
91994871 GTCTCACCC
1 GTCTTACCC
91994880 AGAACATATT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:91995036 original size:49 final size:49
Alignment explanation
Indices: 91994973--91995549 Score: 1085
Period size: 49 Copynumber: 11.9 Consensus size: 49
91994963 CACACATATA
* *
91994973 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995022 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995071 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995118 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995167 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995216 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995263 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
91995312 TTTCACATTCATCACATCGACCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995359 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995408 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995457 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
91995506 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
91995550 CATCTCATAC
Statistics
Matches: 518, Mismatches: 4, Indels: 12
0.97 0.01 0.02
Matches are distributed among these distances:
47 140 0.27
49 378 0.73
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:91995152 original size:96 final size:97
Alignment explanation
Indices: 91994973--91995549 Score: 1047
Period size: 96 Copynumber: 5.9 Consensus size: 97
91994963 CACACATATA
* *
91994973 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
91995038 TCGGCCATTAGGCCTTATCACATATATATACAC
65 TCGGCCATTAGGCCTTATCACATATATATACAC
91995071 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT
91995135 CGGCCATTAGGCCTTATCACATATATATACAC
66 CGGCCATTAGGCCTTATCACATATATATACAC
91995167 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
91995232 TCGGCCATTAGGCCTTATCAC--ATATATACAC
65 TCGGCCATTAGGCCTTATCACATATATATACAC
91995263 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
*
91995328 TCGACCATTAGGCCTTATCAC--ATATATACAC
65 TCGGCCATTAGGCCTTATCACATATATATACAC
91995359 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
91995424 TCGGCCATTAGGCCTTATCACATATATATACAC
65 TCGGCCATTAGGCCTTATCACATATATATACAC
91995457 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
91995522 TCGGCCATTAGGCCTTATCACATATATA
65 TCGGCCATTAGGCCTTATCACATATATA
91995550 CATCTCATAC
Statistics
Matches: 471, Mismatches: 4, Indels: 8
0.98 0.01 0.02
Matches are distributed among these distances:
96 285 0.61
98 186 0.39
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (97 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATATACAC
Found at i:91995190 original size:145 final size:145
Alignment explanation
Indices: 91994973--91995551 Score: 1099
Period size: 145 Copynumber: 4.0 Consensus size: 145
91994963 CACACATATA
* *
91994973 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
91995038 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
91995103 ATCACATATATACAC
131 ATCACATATATACAC
91995118 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
91995183 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
91995248 ATCACATATATACAC
131 ATCACATATATACAC
91995263 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
91995328 TCGACCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
91995391 ATCACATATATATACAC
131 ATCAC--ATATATACAC
91995408 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
91995473 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
91995538 ATCACATATATACA
131 ATCACATATATACA
91995552 TCTCATACAT
Statistics
Matches: 426, Mismatches: 4, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
143 47 0.11
145 332 0.78
147 47 0.11
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (145 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATACAC
Found at i:91999235 original size:40 final size:40
Alignment explanation
Indices: 91999164--91999281 Score: 139
Period size: 40 Copynumber: 2.9 Consensus size: 40
91999154 AGGCACGGAG
* *
91999164 GCCCGGATACACGTCACCAGCAT-AATTGCTCTTCGGGACCTA
1 GCCCGGATACA--TCACTAGCATGAA-TGCTCTTCGGAACCTA
*
91999206 GCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTA
1 GCCCGGATACATCACTAGCATGAATGCTCTTCGGAACCTA
* * * *
91999246 GTCCGGATATATCATTAGCACGAATGCTCTTCGGAA
1 GCCCGGATACATCACTAGCATGAATGCTCTTCGGAA
91999282 TTTAGCCGGA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
40 55 0.81
41 2 0.03
42 11 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCCCGGATACATCACTAGCATGAATGCTCTTCGGAACCTA
Found at i:91999391 original size:40 final size:40
Alignment explanation
Indices: 91999190--91999410 Score: 193
Period size: 40 Copynumber: 5.5 Consensus size: 40
91999180 CCAGCATAAT
* * **
91999190 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
* * * *
91999230 TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
* * * * *
91999270 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCACAAT
1 TGCTCTTCGGGACTTAGCCCGGATAT-ATCACTAGCACAAA
* * *
91999310 TGC-CTTCGGGTCTTAACCC-GAGTATAGCAACTCA-CACAAA
1 TGCTCTTCGGGACTTAGCCCGGA-TATATC-ACT-AGCACAAA
* *
91999350 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACAAA
91999390 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGGACTTAGCCCGG
91999411 GTATCATTCA
Statistics
Matches: 150, Mismatches: 23, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
39 22 0.15
40 124 0.83
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
Found at i:92001430 original size:7 final size:7
Alignment explanation
Indices: 92001418--92001442 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
92001408 GTTGTCTTCT
92001418 TGTTTGA
1 TGTTTGA
92001425 TGTTTGA
1 TGTTTGA
92001432 TGTTTGA
1 TGTTTGA
92001439 TGTT
1 TGTT
92001443 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:92002371 original size:27 final size:28
Alignment explanation
Indices: 92002315--92002384 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
92002305 AAATTTGTAC
92002315 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
92002343 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
92002370 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
92002385 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:92009272 original size:7 final size:7
Alignment explanation
Indices: 92009260--92009284 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
92009250 GTTGTCTTCT
92009260 TGTTTGA
1 TGTTTGA
92009267 TGTTTGA
1 TGTTTGA
92009274 TGTTTGA
1 TGTTTGA
92009281 TGTT
1 TGTT
92009285 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:92010210 original size:27 final size:28
Alignment explanation
Indices: 92010154--92010223 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
92010144 AAATTTGTAC
92010154 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
92010182 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
92010209 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
92010224 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:92012204 original size:37 final size:37
Alignment explanation
Indices: 92012154--92012273 Score: 231
Period size: 37 Copynumber: 3.2 Consensus size: 37
92012144 TTATCACGAA
92012154 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
92012191 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
92012228 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
92012265 GTCTCACCC
1 GTCTTACCC
92012274 AGAACATATT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:92012425 original size:49 final size:49
Alignment explanation
Indices: 92012368--92012797 Score: 791
Period size: 49 Copynumber: 8.9 Consensus size: 49
92012358 CACACATATA
* *
92012368 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92012417 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92012466 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92012513 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92012562 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
92012609 TTTCACAGTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92012658 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92012705 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92012754 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
92012798 CATCTCATAC
Statistics
Matches: 371, Mismatches: 4, Indels: 12
0.96 0.01 0.03
Matches are distributed among these distances:
47 140 0.38
49 231 0.62
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:92012547 original size:96 final size:96
Alignment explanation
Indices: 92012368--92012799 Score: 828
Period size: 96 Copynumber: 4.5 Consensus size: 96
92012358 CACACATATA
*
92012368 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATCACA
92012433 TCGGCCATTAGGCCTTATCACATATATATACAC
64 TCGGCCATTAGGCCTTATCACATATATATACAC
92012466 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
92012531 GGCCATTAGGCCTTATCACATATATATACAC
66 GGCCATTAGGCCTTATCACATATATATACAC
*
92012562 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAGTCATCACATC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
92012627 GGCCATTAGGCCTTATCACATATATATACAC
66 GGCCATTAGGCCTTATCACATATATATACAC
92012658 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
92012723 GGCCATTAGGCCTTATCACATATATATACAC
66 GGCCATTAGGCCTTATCACATATATATACAC
92012754 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
92012800 TCTCATACAT
Statistics
Matches: 331, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
96 291 0.88
98 40 0.12
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.32
Consensus pattern (96 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACAC
Found at i:92016964 original size:71 final size:71
Alignment explanation
Indices: 92016876--92017110 Score: 470
Period size: 71 Copynumber: 3.3 Consensus size: 71
92016866 CGATTTGTCT
92016876 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
92016941 CTTTCA
66 CTTTCA
92016947 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
92017012 CTTTCA
66 CTTTCA
92017018 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
92017083 CTTTCA
66 CTTTCA
92017089 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
92017111 GATACATCTC
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 164 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:92017006 original size:41 final size:41
Alignment explanation
Indices: 92016961--92017078 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
92016951 GCTCTCTTGT
92016961 CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
1 CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
* * * * *
92017002 CTACAT-TTATCTTTCAC---G--T-A-GC-T-C--TCTTG
1 CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
92017031 TCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
1 -CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
92017073 CTACAT
1 CTACAT
92017079 TTATCTTTCA
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 3 0.06
30 6 0.11
31 9 0.17
32 1 0.02
33 2 0.04
34 2 0.04
35 1 0.02
36 1 0.02
37 2 0.04
38 2 0.04
39 1 0.02
40 9 0.17
41 12 0.22
42 3 0.06
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (41 bp):
CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
Found at i:92017148 original size:142 final size:141
Alignment explanation
Indices: 92016876--92017144 Score: 454
Period size: 142 Copynumber: 1.9 Consensus size: 141
92016866 CGATTTGTCT
92016876 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
* * *
92016941 CTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTAC
66 CTTTCACGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTAC
92017006 ATTTATCTTTCA
130 ATTTATCTTTCA
92017018 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
* *
92017083 CTTTCACGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
66 CTTTCACGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
92017145 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
139 23 0.19
140 1 0.01
141 1 0.01
142 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.34
Consensus pattern (141 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCACGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACA
TTTATCTTTCA
Found at i:92018565 original size:207 final size:207
Alignment explanation
Indices: 92018210--92018607 Score: 796
Period size: 207 Copynumber: 1.9 Consensus size: 207
92018200 AGTATGCAAA
92018210 TTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCA
1 TTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCA
92018275 CGAAATTTTCACACAATCATGCAATCATATCATAAACCCCAAAATATTTATAAAACAATTATTTC
66 CGAAATTTTCACACAATCATGCAATCATATCATAAACCCCAAAATATTTATAAAACAATTATTTC
92018340 TATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGTTGTCACAATTT
131 TATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGTTGTCACAATTT
92018405 AGTATGAAATTG
196 AGTATGAAATTG
92018417 TTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCA
1 TTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCA
92018482 CGAAATTTTCACACAATCATGCAATCATATCATAAACCCCAAAATATTTATAAAACAATTATTTC
66 CGAAATTTTCACACAATCATGCAATCATATCATAAACCCCAAAATATTTATAAAACAATTATTTC
92018547 TATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGTTGTCACA
131 TATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGTTGTCACA
92018608 TATAGTTTAT
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
207 191 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (207 bp):
TTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCA
CGAAATTTTCACACAATCATGCAATCATATCATAAACCCCAAAATATTTATAAAACAATTATTTC
TATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGTTGTCACAATTT
AGTATGAAATTG
Found at i:92020275 original size:58 final size:57
Alignment explanation
Indices: 92020203--92020404 Score: 167
Period size: 58 Copynumber: 3.3 Consensus size: 57
92020193 AGTTCAACCA
*
92020203 TAATTAAACTTAATAATTTTAATATTAAATTAATATAATACTTATCAAGATAAATAT
1 TAATTAAATTTAATAATTTTAATATTAAATTAATATAATACTTATCAAGATAAATAT
* *
92020260 TAGATTAAATTTAAT-A-TTAAATCTATTAAATTAATATAATACTTATCTACAACATAAATAT
1 TA-ATTAAATTTAATAATTTTAA--TATTAAATTAATATAATACTTA--T-CAAGATAAATAT
*
92020321 TAAATTTAATTTAATATTAAGATAATCACTTTAATATTAAATTAATAAAATA-TTATCAAGATAA
1 T-AA-TT-A---AAT-TT-A-ATAAT---TTTAATATTAAATTAATATAATACTTATCAAGATAA
92020385 ATAT
54 ATAT
*
92020389 TAATATTAATTTAATA
1 TAAT-TAAATTTAATA
92020405 TTAAAACTAT
Statistics
Matches: 117, Mismatches: 7, Indels: 39
0.72 0.04 0.24
Matches are distributed among these distances:
56 4 0.03
57 3 0.03
58 33 0.28
60 4 0.03
61 14 0.12
62 5 0.04
63 4 0.03
66 4 0.03
67 5 0.04
68 13 0.11
69 3 0.03
70 1 0.01
71 3 0.03
72 17 0.15
74 4 0.03
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (57 bp):
TAATTAAATTTAATAATTTTAATATTAAATTAATATAATACTTATCAAGATAAATAT
Found at i:92020355 original size:61 final size:58
Alignment explanation
Indices: 92020229--92020357 Score: 152
Period size: 61 Copynumber: 2.2 Consensus size: 58
92020219 TTTTAATATT
* * * *
92020229 AAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCTATT
1 AAATTAATATAATACTTATCAACATAAATATTAAATTAAATTTAATATTAAATCAATC
*
92020287 AAATTAATATAATACTTATCTACAACATAAATATTAAATTTAATTTAATATTAAGAT-AATC
1 AAATTAATATAATACTTA--T-CAACATAAATATTAAATTAAATTTAATATTAA-ATCAATC
**
92020348 ACTTTAATAT
1 AAATTAATAT
92020358 TAAATTAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
58 18 0.30
60 1 0.02
61 39 0.65
62 2 0.03
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (58 bp):
AAATTAATATAATACTTATCAACATAAATATTAAATTAAATTTAATATTAAATCAATC
Found at i:92020424 original size:68 final size:71
Alignment explanation
Indices: 92020283--92020425 Score: 161
Period size: 68 Copynumber: 2.0 Consensus size: 71
92020273 ATATTAAATC
* *
92020283 TATTAAATTAATATAATACTTATCTACAACATAAATATTAAATTTAATTTAATATTAAGATAATC
1 TATTAAATTAATAAAATACTTA-CTACAACATAAATATTAAATTTAATTTAATATTAAAATAATC
***
92020348 ACTTTAA
65 AAAATAA
*
92020355 TATTAAATTAATAAAATA-TTA-T-CAAGATAAATATT-AATATTAATTTAATATTAAAACT-AT
1 TATTAAATTAATAAAATACTTACTACAACATAAATATTAAAT-TTAATTTAATATTAAAA-TAAT
*
92020415 TAAAATAA
64 CAAAATAA
92020423 TAT
1 TAT
92020426 CATTTTTGGA
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
67 3 0.05
68 37 0.60
69 2 0.03
71 3 0.05
72 17 0.27
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (71 bp):
TATTAAATTAATAAAATACTTACTACAACATAAATATTAAATTTAATTTAATATTAAAATAATCA
AAATAA
Found at i:92023542 original size:34 final size:35
Alignment explanation
Indices: 92023461--92023547 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 35
92023451 CTCATTAATT
* *
92023461 ATTCGTCGATTTATCCGACTAGCGCAGGACACAAC
1 ATTCGTCGGTTTATCTGACTAGCGCAGGACACAAC
* ** *
92023496 TTTCGTTAGTTTATCTGACTAGTGCTAGG-CAC-AC
1 ATTCGTCGGTTTATCTGACTAGCGC-AGGACACAAC
92023530 ATTCGTCGGTTTATCTGA
1 ATTCGTCGGTTTATCTGA
92023548 TTAATGCTGG
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
34 17 0.40
35 22 0.52
36 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (35 bp):
ATTCGTCGGTTTATCTGACTAGCGCAGGACACAAC
Found at i:92023700 original size:143 final size:143
Alignment explanation
Indices: 92023402--92023707 Score: 378
Period size: 143 Copynumber: 2.1 Consensus size: 143
92023392 TTGATTCATT
* * *
92023402 CGACTAGCGTTGGGCGCAAATATCATTGGTTTATCCAACTAGAGCTGGGCTCATTAATTATTCGT
1 CGACTAGCGCTGGGCGCAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGT
* * * * * * *
92023467 CGATTTATCCGACTAGCGCAGGACACAACTTTCGTTAGTTTATCTGACTAGTGCTAGGCACACAT
66 CGATTTATCCGACTAGCACAGGACACAACCTCCATCAGCTTATCTAACTAGTGCTAGGCACACAT
92023532 TCGTCGGTTTATC
131 TCGTCGGTTTATC
* * ** * ** *
92023545 TGATTAATGCTGGGTGCAAATATTGTCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCTT
1 CGACTAGCGCTGGGCGCAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGT
* * * * * *
92023610 CGGTTTATCCGACTAGCACTGGACGCAACCTCCATCAGCTTATCTAACTAGTGTTGGGCGCACAT
66 CGATTTATCCGACTAGCACAGGACACAACCTCCATCAGCTTATCTAACTAGTGCTAGGCACACAT
*
92023675 TTGTCGGTTTATC
131 TCGTCGGTTTATC
*
92023688 CGACTAGCGCTGGGCACAAA
1 CGACTAGCGCTGGGCGCAAA
92023708 CTGTTTCGCG
Statistics
Matches: 132, Mismatches: 31, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
143 132 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (143 bp):
CGACTAGCGCTGGGCGCAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGT
CGATTTATCCGACTAGCACAGGACACAACCTCCATCAGCTTATCTAACTAGTGCTAGGCACACAT
TCGTCGGTTTATC
Found at i:92027938 original size:15 final size:16
Alignment explanation
Indices: 92027918--92027952 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
92027908 TCCCACTTTC
92027918 TATTTAATATA-ATTA
1 TATTTAATATATATTA
*
92027933 TATTTATTATATATTA
1 TATTTAATATATATTA
92027949 TATT
1 TATT
92027953 ATATAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTTAATATATATTA
Found at i:92037937 original size:26 final size:24
Alignment explanation
Indices: 92037906--92037955 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
92037896 AAATAAAAAA
*
92037906 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
92037932 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
92037956 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:92037975 original size:21 final size:21
Alignment explanation
Indices: 92037926--92037984 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
92037916 ATAATAAATC
*
92037926 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
92037946 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
92037968 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
92037985 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:92038061 original size:15 final size:16
Alignment explanation
Indices: 92038031--92038063 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
92038021 AAATGGTTAT
92038031 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
92038048 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
92038063 A
1 A
92038064 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:92040213 original size:24 final size:25
Alignment explanation
Indices: 92040186--92040240 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
92040176 AACAAGCTAT
* * *
92040186 ATAAAAAGGAAAATAAT-AGGTAAA
1 ATAAAAAAGAAAAAAATAAAGTAAA
*
92040210 ATAAAAAATAAAAAAATAAAGTAAA
1 ATAAAAAAGAAAAAAATAAAGTAAA
92040235 ATAAAA
1 ATAAAA
92040241 TAATAGAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (25 bp):
ATAAAAAAGAAAAAAATAAAGTAAA
Found at i:92040223 original size:25 final size:26
Alignment explanation
Indices: 92040195--92040245 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 26
92040185 TATAAAAAGG
92040195 AAAATAATAGGTAAAATAAAA-AATAAA
1 AAAATAA-A-GTAAAATAAAATAATAAA
92040222 AAAATAAAGTAAAATAAAATAATA
1 AAAATAAAGTAAAATAAAATAATA
92040246 GAATCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 11 0.48
26 5 0.22
27 7 0.30
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.20
Consensus pattern (26 bp):
AAAATAAAGTAAAATAAAATAATAAA
Found at i:92040463 original size:3 final size:3
Alignment explanation
Indices: 92040455--92040668 Score: 199
Period size: 3 Copynumber: 72.3 Consensus size: 3
92040445 AGAAAGAAAT
92040455 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
92040503 AT- ACA ATA ATA ATA A-A ATAA AGA ATA ATA ATA ATA GTA A-A GACA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA
** * * *
92040547 ATA ATA ATA AGC ATG ATA ATA ATA ATA CTA ATA ATA ATA ATA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * *
92040595 ATA GTA ATA ATA GTA GCA ATA ATA ATA ATA ATA GTA A-A AGA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
92040641 ATA ATA A-A ATTA ATTA AT- TTA ATA ATA A
1 ATA ATA ATA A-TA A-TA ATA ATA ATA ATA A
92040669 AGTAGTTAAA
Statistics
Matches: 175, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
2 11 0.06
3 155 0.89
4 9 0.05
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:92041599 original size:15 final size:15
Alignment explanation
Indices: 92041575--92041609 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
92041565 TAGGGGTGCA
*
92041575 AAGGCTGCTGGTCAG
1 AAGGCGGCTGGTCAG
92041590 AAGGCGGCTGGTCAG
1 AAGGCGGCTGGTCAG
92041605 AAGGC
1 AAGGC
92041610 CTAGGTGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.43, T:0.14
Consensus pattern (15 bp):
AAGGCGGCTGGTCAG
Found at i:92042239 original size:44 final size:44
Alignment explanation
Indices: 92042159--92042338 Score: 148
Period size: 44 Copynumber: 3.9 Consensus size: 44
92042149 AGGATTAATA
* * *
92042159 GCTTCAATCTGCTCCTCTGCAACTTCAGGGAA-ATAAGACTGGCG
1 GCTTCAATCTGCTCCACTGCAACTTCA-AGAAGATAAGACTGACG
* * *
92042203 GCTTCAATCTGCTCCACTGCAACTTTAAGAAGATAAGATTTGTCATAATTTG
1 GCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGA-----C-TGA--CG
* * *
92042255 TAGCTTTAATCTGTTCCACTGCAACTTC-AGAGAGATAAGGCTGACG
1 --GCTTCAATCTGCTCCACTGCAACTTCAAGA-AGATAAGACTGACG
*
92042301 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGA
92042339 TCCACCATAA
Statistics
Matches: 107, Mismatches: 16, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.03
44 62 0.58
45 2 0.02
46 1 0.01
48 2 0.02
49 2 0.02
50 1 0.01
52 1 0.01
53 3 0.03
54 30 0.28
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGACTGACG
Found at i:92042333 original size:98 final size:98
Alignment explanation
Indices: 92042157--92042390 Score: 315
Period size: 98 Copynumber: 2.4 Consensus size: 98
92042147 ATAGGATTAA
* * * * *
92042157 TAGCTTCAATCTGCTCCTCTGCAACTTCAGGGAAATAAGACTGGCGGCTTCAATCTGCTCCACTG
1 TAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAAGACTGACGGCTTCAATCTGCTCCACTG
* ****
92042222 CAACTTTAAGAAGATAAGATTTGTCATAATTTG
66 CAACTTCAAGAAGATAAGATCCACCATAATTTG
* *
92042255 TAGCTTTAATCTGTTCCACTGCAACTTCAGAGAGATAAGGCTGACGGCTTCAATCTGCTCCACTG
1 TAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAAGACTGACGGCTTCAATCTGCTCCACTG
*
92042320 CAACTTCAGGAAGATAAGATCCACCATAATTTG
66 CAACTTCAAGAAGATAAGATCCACCATAATTTG
* * * *
92042353 TAGCTTTAATCTATTCCACTACAACGTCAGGGAAATAA
1 TAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAA
92042391 TATTCGCTGT
Statistics
Matches: 118, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
98 118 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (98 bp):
TAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAAGACTGACGGCTTCAATCTGCTCCACTG
CAACTTCAAGAAGATAAGATCCACCATAATTTG
Found at i:92042623 original size:143 final size:143
Alignment explanation
Indices: 92042264--92043045 Score: 1023
Period size: 143 Copynumber: 5.5 Consensus size: 143
92042254 GTAGCTTTAA
* * * **
92042264 TCTGTTCCACTGCAACTTCAGAGAGATAAGGCTGACGGCTTCAATCTGCTCCACTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
* * * *
92042329 GAAGATAAGATCCACCATAATTTGTAGCTTTAATCTATTCCACTACAACGTCAGGGAAATAATAT
66 GAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGAT
92042394 TCGCTGT-TTCAG
131 TCGCTGTCTTCAG
* * * * * *
92042406 TCTGTTCCGTTGCAGCTTCAAGGAGATAAGGCTAGTGGCTTCAATTTGCTCCACTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
92042471 GAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGAT
66 GAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGAT
*
92042536 TCGCTGTTTTCAG
131 TCGCTGTCTTCAG
* * * * *
92042549 TCTGCTCTGCTGTAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCAATTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
* * * * *
92042614 GAAGATAAGATTCTCCATAATTTTTAGCTTTAATCTATTCCATTGCAACGTCAGGGAAATAAGAT
66 GAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGAT
*
92042679 TCGCTGTCTTCAA
131 TCGCTGTCTTCAG
* ** * *
92042692 CCTGCTCTACTGCAACTTTAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCA-
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
* * * * * **
92042756 GACAGATAAAAATT-TCCATATTTTGTAGTTTTAATCTGTTCCACTGCAATATCAGGGAAATAAG
66 GA-AGAT-AAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAG
* *
92042820 ATTCGTTGTCTTCAA
129 ATTCGCTGTCTTCAG
* * * * *
92042835 TTTGCTCCGCTACAAATTCAGGGAGATAAGGCTGGTGGCTTTAATCTGCTCCACTGTAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
*
92042900 AAAGATAAGA-TCGGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGA
66 GAAGATAAGATTC-GCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGA
*
92042964 TTTGCTGTCTTCAG
130 TTCGCTGTCTTCAG
* * * * * *
92042978 TCTGCTCCACTGCAACTTCAAGGAGATAAGGCTAGTGGTTTTAATCTGCTCTACTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
92043043 GAA
66 GAA
92043046 AGATCCGCCA
Statistics
Matches: 557, Mismatches: 77, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
141 1 0.00
142 129 0.23
143 421 0.76
144 6 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (143 bp):
TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
GAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGAT
TCGCTGTCTTCAG
Found at i:92042721 original size:45 final size:44
Alignment explanation
Indices: 92042652--92042756 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 44
92042642 TTTAATCTAT
* * * * *
92042652 TCCATTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAACCTGC
1 TCCACTGCAACTTCAGGGAAATAAGACT-GATGGCTTCAACCTGC
* * * * *
92042697 TCTACTGCAACTTTAGGGAGATAAGGCTGATGGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAAATAAGACTGATGGCTTCAACCTGC
92042741 TCCACTGCAACTTCAG
1 TCCACTGCAACTTCAG
92042757 ACAGATAAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
44 27 0.56
45 21 0.44
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAAATAAGACTGATGGCTTCAACCTGC
Found at i:92042951 original size:429 final size:428
Alignment explanation
Indices: 92042272--92043045 Score: 1140
Period size: 429 Copynumber: 1.8 Consensus size: 428
92042262 AATCTGTTCC
92042272 ACTGCAACTTCAGAGAGATAAGGCTGACGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
1 ACTGCAACTTCAGAGAGATAAGGCTGACGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
* * *
92042337 GATCCACCATAATTTGTAGCTTTAATCTATTCCACTACAACGTCAGGGAAATAATATTCGCTGTT
66 AATCCACCATAATTTGTAGCTTTAATCTATTCCACTACAACATCAGGGAAATAAGATTCGCTGTT
* * * * ** *
92042402 TCAGTCTGTTCCGTTGCAGCTTCAAGGAGATAAGGCTAGTGGCTTCAATTTGCTCCACTGCAACT
131 TCAATCTGCTCCGCTACAAATTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACT
*
92042467 TCAGGAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATA
196 TCAGAAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATA
* ** * * * *
92042532 AGATTCGCTGTTTTCAGTCTGCTCTGCTGTAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTG
261 AGATTCGCTGTCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAATCTG
*
92042597 CTCAATTGCAACTTCAGGAAGATAAGATTCTCCATAATTTTTAGCTTTAATCTATTCCATTGCAA
326 CTCAACTGCAACTTCAGGAAGATAAGATTCTCCATAATTTTTAGCTTTAATCTATTCCATTGCAA
92042662 CGTCAGGGAAATAAGATTCGCTGTCTTCAACCTGCTCT
391 CGTCAGGGAAATAAGATTCGCTGTCTTCAACCTGCTCT
* * *
92042700 ACTGCAACTTTAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCA-GACAGATA
1 ACTGCAACTTCAGAGAGATAAGGCTGACGGCTTCAATCTGCTCCACTGCAACTTCAGGA-AGAT-
** * * * * * *
92042764 AAAAT-TTCCATATTTTGTAGTTTTAATCTGTTCCACTGCAATATCAGGGAAATAAGATTCGTTG
64 AAAATCCACCATAATTTGTAGCTTTAATCTATTCCACTACAACATCAGGGAAATAAGATTCGCTG
* * * * *
92042828 TCTTCAATTTGCTCCGCTACAAATTCAGGGAGATAAGGCTGGTGGCTTTAATCTGCTCCACTGTA
129 T-TTCAATCTGCTCCGCTACAAATTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCA
92042893 ACTTCAGAAAGATAAGA-TCGGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGA
193 ACTTCAGAAAGATAAGATTC-GCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGA
* * *
92042957 AATAAGATTTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTAGTGGTTTTAA
257 AATAAGATTCGCTGTCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAA
*
92043022 TCTGCTCTACTGCAACTTCAGGAA
322 TCTGCTCAACTGCAACTTCAGGAA
92043046 AGATCCGCCA
Statistics
Matches: 303, Mismatches: 39, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
427 2 0.01
428 109 0.36
429 192 0.63
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (428 bp):
ACTGCAACTTCAGAGAGATAAGGCTGACGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
AATCCACCATAATTTGTAGCTTTAATCTATTCCACTACAACATCAGGGAAATAAGATTCGCTGTT
TCAATCTGCTCCGCTACAAATTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACT
TCAGAAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATA
AGATTCGCTGTCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAATCTG
CTCAACTGCAACTTCAGGAAGATAAGATTCTCCATAATTTTTAGCTTTAATCTATTCCATTGCAA
CGTCAGGGAAATAAGATTCGCTGTCTTCAACCTGCTCT
Found at i:92043176 original size:21 final size:21
Alignment explanation
Indices: 92043150--92043191 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
92043140 ATAGCTTTAA
* *
92043150 TCTGCTCTATTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
92043171 TCTGCTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
92043192 GGAGATAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.33
Consensus pattern (21 bp):
TCTGCTCCACTGCAACTTCAG
Found at i:92043223 original size:65 final size:65
Alignment explanation
Indices: 92043107--92043234 Score: 161
Period size: 65 Copynumber: 2.0 Consensus size: 65
92043097 CATCTTTAAC
* * * * *
92043107 CTGCTCAACTGTAACTTCAGGGAGATAAGGCTTATAGCTTTAATCTGCTCTATTGCAACTTCAGT
1 CTGCTCAACTGCAACTTCAGGGAGATAAGACTTATAGATTTAATCTACTCTACTGCAACTTCAGT
* *
92043172 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA-ATTTCAA-CATACTCTACTGCAACTTCA
1 CTGCTCAACTGCAACTTCAGGGAGATAAGACTTATAGATTT-AATC-TACTCTACTGCAACTTCA
92043235 AAGAGATAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
64 4 0.07
65 50 0.93
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (65 bp):
CTGCTCAACTGCAACTTCAGGGAGATAAGACTTATAGATTTAATCTACTCTACTGCAACTTCAGT
Found at i:92043364 original size:89 final size:89
Alignment explanation
Indices: 92043271--92043469 Score: 197
Period size: 89 Copynumber: 2.2 Consensus size: 89
92043261 TGCTCCATTA
* *
92043271 CAACTTCAGGGAGATAAGATTCGCCAT-TTTCGATCTGCTCCATTGCAACCTCAAGGAGATAAGA
1 CAACTTCAGGGAGATAAGATTCGCCATCTTT-GATCTACTCCACTGCAACCTCAAGGAGATAAGA
** *
92043335 -CTTGTAACTTCAACCTGCCCCACTG
65 TC-TACAACTTCAACCTACCCCACTG
** * * ** * *
92043360 CAACTTCAACTG-GATAAGGTTGGTTATCTTTGATCTACTCCGCTGCAACTTCAAGGAGATAAGA
1 CAACTTC-AGGGAGATAAGATTCGCCATCTTTGATCTACTCCACTGCAACCTCAAGGAGATAAGA
* *
92043424 TCTACAACTTCAATCTACTCCACTG
65 TCTACAACTTCAACCTACCCCACTG
**
92043449 TTACTTCAGGGAGATAAGATT
1 CAACTTCAGGGAGATAAGATT
92043470 TATGGATTCA
Statistics
Matches: 86, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
88 2 0.02
89 78 0.91
90 6 0.07
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (89 bp):
CAACTTCAGGGAGATAAGATTCGCCATCTTTGATCTACTCCACTGCAACCTCAAGGAGATAAGAT
CTACAACTTCAACCTACCCCACTG
Found at i:92043445 original size:133 final size:133
Alignment explanation
Indices: 92043162--92043467 Score: 301
Period size: 133 Copynumber: 2.3 Consensus size: 133
92043152 TGCTCTATTG
* * * * * *
92043162 CAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAACATACTCTACTG
1 CAACTTCAATCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGTAACTTCAACATACCCCACTG
* * * *
92043227 CAACTTCAAAGAGATAAGGTTAGTGGCTGTAATATGCTCCATTACAACTTCAGGGAGATAAGATT
66 CAACTTCAAAGAGATAAGGTTAGTAGCTGTAATATACTCCACTACAACTTCAAGGAGATAAGATT
*
92043292 CGC
131 CGA
** * * * *
92043295 CATTTTCGATCTGCTCCATTGCAACCTCAAGGAGATAAGACTTGTAACTTCAACCTGCCCCACTG
1 CAACTTCAATCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGTAACTTCAACATACCCCACTG
* * * * * * * *
92043360 CAACTTCAACTG-GATAAGGTTGGTTATCTTTGATCTACTCCGCTGCAACTTCAAGGAGATAAGA
66 CAACTTCAA-AGAGATAAGGTTAG-TAGCTGTAATATACTCCACTACAACTTCAAGGAGATAAGA
*
92043424 -TCTA
129 TTCGA
* ** * *
92043428 CAACTTCAATCTACTCCACTGTTACTTCAGGGAGATAAGA
1 CAACTTCAATCTGCTCCACTGCAACCTCAAGGAGATAAGA
92043468 TTTATGGATT
Statistics
Matches: 136, Mismatches: 35, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
133 105 0.77
134 31 0.23
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (133 bp):
CAACTTCAATCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGTAACTTCAACATACCCCACTG
CAACTTCAAAGAGATAAGGTTAGTAGCTGTAATATACTCCACTACAACTTCAAGGAGATAAGATT
CGA
Found at i:92046093 original size:39 final size:39
Alignment explanation
Indices: 92046017--92046272 Score: 363
Period size: 39 Copynumber: 6.6 Consensus size: 39
92046007 AGGATTTTAA
* * * *
92046017 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
*
92046055 CCGAGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
92046094 TCGGGTTAAGTCCCGAAGGTATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
92046133 CCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
92046172 CCGGGCTAAGTCCCGAAGGCATTCGTGCCGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
92046211 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
**
92046250 CCGGGCTAAGTTTCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
92046273 TGGGTTGGAA
Statistics
Matches: 197, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
38 19 0.10
39 174 0.88
40 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:92048740 original size:33 final size:33
Alignment explanation
Indices: 92048698--92048764 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
92048688 CGAAAATGTC
92048698 TACACATCTTAGTAGCACCTGATTCTTTCTCCT
1 TACACATCTTAGTAGCACCTGATTCTTTCTCCT
92048731 TACACATCTTAGTAGCACCTGATTCTTTCTCCT
1 TACACATCTTAGTAGCACCTGATTCTTTCTCCT
92048764 T
1 T
92048765 TTATATAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.40
Consensus pattern (33 bp):
TACACATCTTAGTAGCACCTGATTCTTTCTCCT
Found at i:92056497 original size:15 final size:15
Alignment explanation
Indices: 92056477--92056510 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
92056467 ACAAGCCGAA
92056477 AATAAA-ATGACAAAT
1 AATAAAGATGA-AAAT
92056492 AATAAAGATGAAAAT
1 AATAAAGATGAAAAT
92056507 AATA
1 AATA
92056511 CAAAATAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (15 bp):
AATAAAGATGAAAAT
Found at i:92056575 original size:14 final size:14
Alignment explanation
Indices: 92056556--92056638 Score: 64
Period size: 15 Copynumber: 5.8 Consensus size: 14
92056546 AAATAATAGG
92056556 TAAAAAAACTAAAAA
1 TAAAAAAA-TAAAAA
92056571 TAAAAAAATAAAAA
1 TAAAAAAATAAAAA
92056585 -AATAAAGAAT-AAAA
1 TAA-AAA-AATAAAAA
* *
92056599 TAAAATAAT-AGAA
1 TAAAAAAATAAAAA
*
92056612 TAAATAAATAAATAAA
1 TAAAAAAAT-AA-AAA
*
92056628 TAAATAAATAA
1 TAAAAAAATAA
92056639 TATGTAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
13 15 0.26
14 15 0.26
15 16 0.28
16 11 0.19
ACGTcount: A:0.77, C:0.01, G:0.02, T:0.19
Consensus pattern (14 bp):
TAAAAAAATAAAAA
Found at i:92056619 original size:4 final size:4
Alignment explanation
Indices: 92056568--92056638 Score: 74
Period size: 4 Copynumber: 17.5 Consensus size: 4
92056558 AAAAAACTAA
* * *
92056568 AAAT AAAA AAAT AAAA AAAT AAA- GAAT AAAAT AAA- ATAAT AGAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT A-AAT AAAT
92056617 AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AA
92056639 TATGTAAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
3 3 0.05
4 45 0.80
5 8 0.14
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:92056685 original size:24 final size:25
Alignment explanation
Indices: 92056658--92056712 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
92056648 TAGTTTTAAG
92056658 AATAATAATT-ATA-ACAATAATG-A
1 AATAATAATTAATATA-AATAATGTA
92056681 TAATAAT-ATTAATATAAATAATGTA
1 -AATAATAATTAATATAAATAATGTA
92056706 AATAATA
1 AATAATA
92056713 GAATACCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
23 3 0.11
24 22 0.81
25 2 0.07
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
AATAATAATTAATATAAATAATGTA
Found at i:92056847 original size:3 final size:3
Alignment explanation
Indices: 92056841--92057031 Score: 128
Period size: 3 Copynumber: 65.0 Consensus size: 3
92056831 CTACTACTAC
* *
92056841 TAA TAA TAA TAA TAA TAA TAA T-A CAA TAA TAA TAA -AA TAAA GAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* * * ** *
92056885 AAA TAA T-A TAA TAA TAG TAA -AGA CAA TAA TAA TAA GCA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* * * * * * * * *
92056929 TAA TAA TAC TAA TAC TAA TAA TAA TAA TAG TAG TAG TAG TAG TAG TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92056977 TAA TAA TAA TAA TAA TAA -AA TAA -AA TAA TAA TAA -AA TTAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA -TAA
*
92057021 T-T TAA TAA TAA
1 TAA TAA TAA TAA
92057032 AGTAGCTAAA
Statistics
Matches: 156, Mismatches: 21, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
2 13 0.08
3 134 0.86
4 9 0.06
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:92058318 original size:47 final size:46
Alignment explanation
Indices: 92058264--92058390 Score: 175
Period size: 46 Copynumber: 2.7 Consensus size: 46
92058254 TTAATTGTGT
* *
92058264 GCTAGTGTATGACATGTCTGGGACATGGCATCGGCATTGAAACG-AGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCATCGAAACGTA-A
* * *
92058311 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAAACGTAA
*
92058357 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
92058391 TACAAGATGT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 47 0.64
47 26 0.36
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAAACGTAA
Found at i:92058465 original size:50 final size:47
Alignment explanation
Indices: 92058314--92058529 Score: 183
Period size: 46 Copynumber: 4.6 Consensus size: 47
92058304 AACGAGAGCT
* * * * *
92058314 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCAT-TGACTGGACATGTAAGTC
* * * **
92058360 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCT--ACAAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTGGACATG-TAAGTC
* *
92058404 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATGGATATGTTAAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGAC-TGGACATG-T-AAGTC
* * * * *
92058454 AGTGTAAGACCATGTTTGGGACATAGCATTGACTTGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTGGACATGTAAGTC
*
92058501 AGTGTAAAACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
92058530 CGACATTATA
Statistics
Matches: 140, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
43 3 0.02
44 12 0.09
45 17 0.12
46 34 0.24
47 30 0.21
48 1 0.01
49 10 0.07
50 33 0.24
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGACTGGACATGTAAGTC
Found at i:92058521 original size:47 final size:47
Alignment explanation
Indices: 92058267--92058531 Score: 238
Period size: 47 Copynumber: 5.7 Consensus size: 47
92058257 ATTGTGTGCT
* * * * *
92058267 AGTGTATGA-CATGTCTGGGACATGGCATCGGCATTGAAACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGACATGTGAGCC
* * *
92058314 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGACATGTGAGCC
* * *
92058360 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-ACAAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGACATG-TGAGCC
* * * * *
92058404 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATGGATATGTTAAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGACATG-T-GAGCC
* * * *
92058454 AGTGTAAGACCATGTTTGGGACATAGCATTGACTTGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGACATGTGAGCC
*
92058501 AGTGTAAAACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
92058532 ACATTATACC
Statistics
Matches: 179, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
43 3 0.02
44 12 0.07
45 15 0.08
46 52 0.29
47 53 0.30
48 1 0.01
49 10 0.06
50 33 0.18
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGACATGTGAGCC
Found at i:92061832 original size:40 final size:40
Alignment explanation
Indices: 92061777--92061986 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
92061767 AACATTGGAA
92061777 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
92061817 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
92061857 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
92061897 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
92061936 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
92061977 CTATATCCGG
1 ATATATCCGG
92061987 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:92076482 original size:40 final size:40
Alignment explanation
Indices: 92076374--92076583 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
92076364 CGGGATTTAA
* * * * *
92076374 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
92076414 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92076454 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92076494 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92076534 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92076574 CCGGATATAT
1 CCGGATATAT
92076584 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:92077080 original size:4 final size:4
Alignment explanation
Indices: 92077071--92077099 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
92077061 ACGAAATCAT
92077071 AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA A
92077100 TATGTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:92077305 original size:3 final size:3
Alignment explanation
Indices: 92077299--92077463 Score: 97
Period size: 3 Copynumber: 55.3 Consensus size: 3
92077289 CTACTACTAC
* * *
92077299 TAA TAA T-A TAA TAA TAA TAA T-A CAA TAA TAA TAAA TAAA GAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA T-AA TAA TAA
* * ** *
92077344 TAA T-A TAA TAA TTAG TAA -AGA CAA TAA TAA TAA GCA TGA TAA TAA
1 TAA TAA TAA TAA -TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * * * *
92077389 TAA TAC TAA TAC TAA TAA TAA TAA TAG TAG TAG TAG TAG TAG TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
92077437 TAA TAA TAA TAA TAA -AA TAA AAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
92077464 TAAAATTAAT
Statistics
Matches: 133, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
2 8 0.06
3 116 0.87
4 9 0.07
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:92078759 original size:47 final size:46
Alignment explanation
Indices: 92078705--92078831 Score: 175
Period size: 46 Copynumber: 2.7 Consensus size: 46
92078695 TTAATTGTGT
* *
92078705 GCTAGTGTATGACATGTCTGGGACATGGCATCGGCATTGAAACG-AGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCATCGAAACGTA-A
* * *
92078752 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAAACGTAA
*
92078798 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
92078832 TACAAGATGT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 47 0.64
47 26 0.36
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAAACGTAA
Found at i:92078906 original size:50 final size:47
Alignment explanation
Indices: 92078755--92078970 Score: 183
Period size: 46 Copynumber: 4.6 Consensus size: 47
92078745 AACGAGAGCT
* * * * *
92078755 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCAT-TGACTGGACATGTAAGTC
* * * **
92078801 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCT--ACAAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTGGACATG-TAAGTC
* *
92078845 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATGGATATGTTAAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGAC-TGGACATG-T-AAGTC
* * * * *
92078895 AGTGTAAGACCATGTTTGGGACATAGCATTGACTTGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTGGACATGTAAGTC
*
92078942 AGTGTAAAACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
92078971 CGACATTATA
Statistics
Matches: 140, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
43 3 0.02
44 12 0.09
45 17 0.12
46 34 0.24
47 30 0.21
48 1 0.01
49 10 0.07
50 33 0.24
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGACTGGACATGTAAGTC
Found at i:92078962 original size:47 final size:47
Alignment explanation
Indices: 92078708--92078972 Score: 238
Period size: 47 Copynumber: 5.7 Consensus size: 47
92078698 ATTGTGTGCT
* * * * *
92078708 AGTGTATGA-CATGTCTGGGACATGGCATCGGCATTGAAACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGACATGTGAGCC
* * *
92078755 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGACATGTGAGCC
* * *
92078801 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-ACAAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGACATG-TGAGCC
* * * * *
92078845 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATGGATATGTTAAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGACATG-T-GAGCC
* * * *
92078895 AGTGTAAGACCATGTTTGGGACATAGCATTGACTTGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGACATGTGAGCC
*
92078942 AGTGTAAAACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
92078973 ACATTATACC
Statistics
Matches: 179, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
43 3 0.02
44 12 0.07
45 15 0.08
46 52 0.29
47 53 0.30
48 1 0.01
49 10 0.06
50 33 0.18
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGACATGTGAGCC
Found at i:92082271 original size:40 final size:40
Alignment explanation
Indices: 92082216--92082425 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
92082206 AACATTGGAA
92082216 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
92082256 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
92082296 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
92082336 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
92082375 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
92082416 CTATATCCGG
1 ATATATCCGG
92082426 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:92090404 original size:40 final size:40
Alignment explanation
Indices: 92090349--92090558 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
92090339 AACATTGGAA
92090349 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
92090389 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
92090429 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
92090469 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
92090508 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
92090549 CTATATCCGG
1 ATATATCCGG
92090559 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:92094449 original size:40 final size:39
Alignment explanation
Indices: 92094384--92094467 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 39
92094374 TATATATATA
**
92094384 TAGCCAAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCAAAGCTATCTCAAACAGCACACCAAGTGCCA-TTT
* * *
92094424 TAGCCAAAGCTATTTCGAACAGCACACTAAGTGCCATTT
1 TAGCCAAAGCTATCTCAAACAGCACACCAAGTGCCATTT
92094463 TAGCC
1 TAGCC
92094468 GATAAGTCGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 8 0.21
40 31 0.79
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (39 bp):
TAGCCAAAGCTATCTCAAACAGCACACCAAGTGCCATTT
Found at i:92097366 original size:25 final size:25
Alignment explanation
Indices: 92097338--92097386 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
92097328 ATAATTAAAC
* * *
92097338 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
92097363 CCTAGGGGCAAAACAGTCATTTTT
1 CCTAGGGGCAAAACAGTCATTTTT
92097387 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:92098568 original size:21 final size:22
Alignment explanation
Indices: 92098542--92098582 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92098532 AAGAAAGAAA
92098542 AAGAAAA-GAC-TAATCCTAAAG
1 AAGAAAACGACAT-ATCCTAAAG
92098563 AAGAAAACGACATATCCTAA
1 AAGAAAACGACATATCCTAA
92098583 GTCCCTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 10 0.56
23 1 0.06
ACGTcount: A:0.56, C:0.17, G:0.12, T:0.15
Consensus pattern (22 bp):
AAGAAAACGACATATCCTAAAG
Found at i:92106354 original size:31 final size:26
Alignment explanation
Indices: 92106287--92106341 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
92106277 TGAAGGACCC
*
92106287 GAATTGGTCACGATTGGTTTTTAAAT
1 GAATTGGTCTCGATTGGTTTTTAAAT
92106313 GAATTGGTCTCGATTGGTTTTTAAAT
1 GAATTGGTCTCGATTGGTTTTTAAAT
92106339 GAA
1 GAA
92106342 CATTTGAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (26 bp):
GAATTGGTCTCGATTGGTTTTTAAAT
Found at i:92110527 original size:16 final size:17
Alignment explanation
Indices: 92110496--92110528 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
92110486 GTCCCAAGCC
92110496 ACACGGGCTTGTGTGACT
1 ACACGGGC-TGTGTGACT
92110514 ACACGGGC-GTGTGAC
1 ACACGGGCTGTGTGAC
92110529 CCTTCAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (17 bp):
ACACGGGCTGTGTGACT
Found at i:92112060 original size:21 final size:20
Alignment explanation
Indices: 92112016--92112060 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
92112006 CTGGTTAGCC
* * *
92112016 CTACCGATATCTTTAGAGTT
1 CTACCAATATCTTGAGACTT
92112036 CTACCAATATCTTGAGGACTT
1 CTACCAATATCTTGA-GACTT
92112057 CTAC
1 CTAC
92112061 GAAATAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (20 bp):
CTACCAATATCTTGAGACTT
Found at i:92119766 original size:57 final size:57
Alignment explanation
Indices: 92119699--92119838 Score: 163
Period size: 57 Copynumber: 2.5 Consensus size: 57
92119689 TGTTACAATT
* * * * * *
92119699 AGGATATAGCCTGGACTGGTAATCCTAATTGAGCTTTTCTAAGTATATGTTATAGAA
1 AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCTTCTAAGCATATGTTAGAGAA
* * * * * *
92119756 AGGATTTAGCCTAGACTAGTAATCCTAATTAAGCTCTTGTGAGCATATTTTGGAGAT
1 AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCTTCTAAGCATATGTTAGAGAA
*
92119813 AGGATTTAGCCTGAACTAGTAATCCT
1 AGGATTTAGCCTGGACTAGTAATCCT
92119839 GTCATATGAT
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 69 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (57 bp):
AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCTTCTAAGCATATGTTAGAGAA
Found at i:92122926 original size:16 final size:17
Alignment explanation
Indices: 92122895--92122927 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
92122885 TTCATAAGTA
92122895 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
92122912 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
92122928 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:92123271 original size:46 final size:46
Alignment explanation
Indices: 92123210--92123483 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 46
92123200 TTTGACATGA
* * * *
92123210 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCAGGT
* * *
92123256 TGCCATGGTACCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* ** *
92123302 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* *
92123348 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* *
92123394 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* *
92123440 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAG
92123484 AGAGCACACT
Statistics
Matches: 211, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 207 0.98
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
Found at i:92124883 original size:175 final size:175
Alignment explanation
Indices: 92124592--92125119 Score: 948
Period size: 175 Copynumber: 3.0 Consensus size: 175
92124582 TAATATTCAA
92124592 GCTGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGA
1 GCTGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGA
92124657 TCCGCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTTAGAATTTTTGG
66 TCCGCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTTAGAATTTTTGG
92124722 TTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTACCCCTGTTCT
131 TTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTACCCCTGTTCT
*
92124767 GCTGTCTATCTTCATCATAGTCACTAAATTATTTATATCTAGAGCTATAGAACTCAAAATTAAGA
1 GCTGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGA
* * *
92124832 TCCGCTAATTTTTCTTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGG
66 TCCGCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTTAGAATTTTTGG
*
92124897 TATAGCCAATAAGTACAGTTTATTCTTTAAAGTTACCCCTGTTCT
131 TTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTACCCCTGTTCT
*
92124942 GCGGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGA
1 GCTGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGA
* * * *
92125007 TCCGCTAATTTTCCCTAAAACTAAACTCATATATATTCCTACCATAAAATTTTTAAAATTTTTGG
66 TCCGCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTTAGAATTTTTGG
* *
92125072 TTTAGCCAATAAGTACATTTTATTCTTTAAAGTTACCCCTATTCT
131 TTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTACCCCTGTTCT
92125117 GCT
1 GCT
92125120 ATCTGACAAT
Statistics
Matches: 335, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
175 335 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (175 bp):
GCTGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGA
TCCGCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTTAGAATTTTTGG
TTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTACCCCTGTTCT
Done.