Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 296 of 438
Found at i:92670551 original size:85 final size:88
Alignment explanation
Indices: 92670259--92670664 Score: 326
Period size: 88 Copynumber: 4.6 Consensus size: 88
92670249 AAGGTTTGCT
* * * ** * *
92670259 ATCTTTAATCTGCTCCACTACTGCTTAGAGAGATAAGATCTTGTAATCCTCCAGCCTTTTACCCT
1 ATCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATC-TGTAATTTTCTAGCCTATTACCCT
* *
92670324 ACTGCTTAGGGAGTTAAAGCCTGCTCATC
65 ACTGCTTAGGG-GTT-AAG---ACTCACC
* * * * * **
92670353 ATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATCTTC-AGCTTGCT-CCACT
1 ATCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTCTAGCCTATTACC-CT
* * * * **
92670416 GCTGCTCAGAGAGATAA-AGCTTGCC
65 ACTGCTTAG-GGGTTAAGA-CTCACC
* * * *
92670441 AT-TTTCGATCCGCTCCACTATTGCTTAGGGAAATAGGATCTGT-ATTTTC-AGTC-AGTTACCC
1 ATCTTT-GATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTCTAGCCTA-TTACCC
92670502 TA-TAGCTTA-GGGTTAAGACTCACC
64 TACT-GCTTAGGGGTTAAGACTCACC
* *
92670526 ATCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAAGATCTGTCATTTTCTCGCCTATTACCCT
1 ATCTTTGATCTGCTCCACTATTGCTTAGGGAGAT-AAGATCTGTAATTTTCTAGCCTATTACCCT
* *
92670591 ACTGCTTAGGGGGTTAAGGCTCATC
65 ACTGCTTA-GGGGTTAAGACTCACC
* * *
92670616 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
1 ATCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTT
92670665 TGATCCACTC
Statistics
Matches: 254, Mismatches: 42, Indels: 37
0.76 0.13 0.11
Matches are distributed among these distances:
85 37 0.15
86 13 0.05
87 22 0.09
88 54 0.21
89 16 0.06
90 44 0.17
91 4 0.02
92 16 0.06
93 10 0.04
94 38 0.15
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (88 bp):
ATCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTCTAGCCTATTACCCTA
CTGCTTAGGGGTTAAGACTCACC
Found at i:92670744 original size:44 final size:46
Alignment explanation
Indices: 92670690--92670833 Score: 168
Period size: 44 Copynumber: 3.2 Consensus size: 46
92670680 TTGCTTAAGG
* *
92670690 AGATAGGATCTGCTGAAATTTAATCTGTTCCACTCCTGC-CAGCG-
1 AGATAAGATCTGCTGAAATTTGATCTGTTCCACTCCTGCTCAGCGA
* * * *
92670734 GGATGAGATCTGCTAAAATTTGATCTGCTCCACTCCTGCTCAGCGA
1 AGATAAGATCTGCTGAAATTTGATCTGTTCCACTCCTGCTCAGCGA
* * * *
92670780 AGATAAGATTTACCGAAATTTGATCTGTTCCGCTCCT-CTCAGCGA
1 AGATAAGATCTGCTGAAATTTGATCTGTTCCACTCCTGCTCAGCGA
*
92670825 AGATCAGAT
1 AGATAAGAT
92670834 TTGTAGTTTT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
44 33 0.40
45 21 0.25
46 29 0.35
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (46 bp):
AGATAAGATCTGCTGAAATTTGATCTGTTCCACTCCTGCTCAGCGA
Found at i:92670834 original size:45 final size:46
Alignment explanation
Indices: 92670704--92670835 Score: 144
Period size: 46 Copynumber: 2.9 Consensus size: 46
92670694 AGGATCTGCT
* * * * * * *
92670704 GAAATTTAATCTGTTCCACTCCTGC-CAGCG-GGATGAGATCTGCT
1 GAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATTTACC
*
92670748 AAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATTTACC
1 GAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATTTACC
* * *
92670794 GAAATTTGATCTGTTCCGCTCCT-CTCAGCGAAGATCAGATTT
1 GAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATTT
92670836 GTAGTTTTCA
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
44 22 0.30
45 23 0.31
46 29 0.39
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (46 bp):
GAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATTTACC
Found at i:92683703 original size:10 final size:12
Alignment explanation
Indices: 92683679--92683710 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
92683669 GGTTAGATCC
92683679 AAAAAAGAAACG
1 AAAAAAGAAACG
92683691 AAAAAA-AAA-G
1 AAAAAAGAAACG
92683701 AAAAAAGAAA
1 AAAAAAGAAA
92683711 AGAATCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 7 0.37
11 6 0.32
12 6 0.32
ACGTcount: A:0.84, C:0.03, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAACG
Found at i:92684393 original size:20 final size:20
Alignment explanation
Indices: 92684368--92684698 Score: 125
Period size: 20 Copynumber: 15.8 Consensus size: 20
92684358 AAATTTTTTT
* *
92684368 AAAAATGATAATAGTAATAA
1 AAAAATAATAATAATAATAA
92684388 AAAAATAATAATAATAATAA
1 AAAAATAATAATAATAATAA
*
92684408 ATAGTAATAATAATACATTAATAA
1 A-A-AAATAATAATA-A-TAATAA
* **
92684432 TAATAATAAT-ATGTTAATAA
1 -AAAAATAATAATAATAATAA
92684452 CAATAAATTAATGAATTAATAACATAA
1 -AA-AAA-TAAT-AA-TAAT-A-ATAA
* *
92684479 CAGTAAGTAAATAA-ACATAA-AA
1 -A-AAAAT-AATAATA-ATAATAA
* *
92684501 ATAAAATAATTATAATAGTAA
1 A-AAAATAATAATAATAATAA
** *
92684522 TATTAACAA-AATAATAATAA
1 -AAAAATAATAATAATAATAA
*
92684542 TAATAATAATAATAATAATAA
1 -AAAAATAATAATAATAATAA
*
92684563 TAATAATAATAATAATAATAA
1 -AAAAATAATAATAATAATAA
** * * *
92684584 AATGATAACAATGATATTAA
1 AAAAATAATAATAATAATAA
* *
92684604 TAAAATAATAGAAAATAATAA
1 AAAAATAATA-ATAATAATAA
* * * *
92684625 TACATTAATAATAAT-ATAT
1 AAAAATAATAATAATAATAA
*** *
92684644 GTTAATAACAATAATAATATA
1 AAAAATAATAATAATAATA-A
* **
92684665 TAAAATAATAAT-ATGGTAA
1 AAAAATAATAATAATAATAA
92684684 AAAAATAATAATAAT
1 AAAAATAATAATAAT
92684699 GTATTAATAA
Statistics
Matches: 237, Mismatches: 51, Indels: 46
0.71 0.15 0.14
Matches are distributed among these distances:
19 25 0.11
20 85 0.36
21 69 0.29
22 19 0.08
23 9 0.04
24 10 0.04
25 5 0.02
26 4 0.02
27 11 0.05
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAAATAATAATAATAATAA
Found at i:92684675 original size:140 final size:131
Alignment explanation
Indices: 92684389--92684984 Score: 305
Period size: 133 Copynumber: 4.4 Consensus size: 131
92684379 TAGTAATAAA
* *
92684389 AAAATAATAATAATAATAAATAGTAATAATAATACATTAATAATAATAATAATATGTTAATAACA
1 AAAATAATAATAATAAT-AATAATAATAATAATA-A-TAATAATAATAATAATA--ATAATAA-A
* * * * * * *
92684454 ATAAATTAATGAATTAATAACATAACAGTAAGTAAATAAACATAAAAATAAAATAATTATAATAG
60 ATAAATCAATGAATTAATAAAATAACAGAAAATAAATAAACATAAAAATAAAATAATAACAATAA
92684519 TAATATT
125 TAATATT
92684526 AACAA-AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAATGAT
1 AA-AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAT-A-
* *
92684590 AA-CAATGATATTAATAAAATAATAGAAAAT-AATAATACATTAATAATAATATATGTTAATAAC
63 AATCAATGA-ATTAATAAAATAACAGAAAATAAATAA-ACA-TAAAAATAA-A-A---TAATAAC
92684653 AATAATAATATAT
120 AATAATAATAT-T
* * * * * **
92684666 AAAATAATAATATGGTAA-AAAAATAATAATAAT-GTATTAATAAGAATGGTAATAATAAAATAA
1 AAAATAATAATA--ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAATAA
* * * * * * *
92684729 GAT-TAT-AA-TAATAGTATTAATA-AAAATAGACATAAA-A-AGATAGTAATAATAGTAACAAT
64 -ATCAATGAATTAATA-AAATAACAGAAAATA-A-ATAAACATA-AAAATAA-AATAATAACAAT
* ***
92684788 AAGAGCGTT
123 AATAATATT
* *
92684797 AATAATAATAATAATAATAATATTGAGAT-ATAA-AA-AAGTAA-ATATAATAA-AATATTAAAA
1 AA-AATAATAATAATAATAATAAT-A-ATAATAATAATAA-TAATA-ATAATAATAATAATAAAA
** * * * * * ** * * **
92684857 TAAAGT-AAT-AAAAAATAATACTATATA-TAAATATATATACATATACGTATATAATAAAAAGT
61 TAAA-TCAATGAATTAATAA-AATA-ACAGAAAATAAATAAACATA-A-AAATAAAATAATAACA
92684919 ATACACTAATA-T
121 ATA-A-TAATATT
*
92684931 ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
1 AAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
92684985 CAAAAAGAAA
Statistics
Matches: 358, Mismatches: 58, Indels: 89
0.71 0.11 0.18
Matches are distributed among these distances:
130 4 0.01
131 35 0.10
132 65 0.18
133 75 0.21
134 37 0.10
135 5 0.01
136 34 0.09
137 22 0.06
138 6 0.02
139 25 0.07
140 33 0.09
141 14 0.04
142 3 0.01
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (131 bp):
AAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAATAAAT
CAATGAATTAATAAAATAACAGAAAATAAATAAACATAAAAATAAAATAATAACAATAATAATAT
T
Found at i:92684708 original size:14 final size:15
Alignment explanation
Indices: 92684689--92684757 Score: 65
Period size: 14 Copynumber: 4.8 Consensus size: 15
92684679 GGTAAAAAAA
92684689 TAATAATAAT-GTAT
1 TAATAATAATAGTAT
* * *
92684703 TAATAAGAATGGTAA
1 TAATAATAATAGTAT
92684718 TAATAA-AATAAG-AT
1 TAATAATAAT-AGTAT
92684732 T-ATAATAATAGTAT
1 TAATAATAATAGTAT
*
92684746 TAATAAAAATAG
1 TAATAATAATAG
92684758 ACATAAAAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
13 6 0.13
14 20 0.44
15 19 0.42
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (15 bp):
TAATAATAATAGTAT
Found at i:92685003 original size:3 final size:3
Alignment explanation
Indices: 92684283--92684984 Score: 307
Period size: 3 Copynumber: 234.0 Consensus size: 3
92684273 ACCCACAAAG
* *
92684283 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA TGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * * * * * * * *
92684329 TTAA ATG GTA A-A AGA ATA ATA GTA ACA ATAA ATT TTT TTA AAA ATG
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
* * *
92684375 ATA ATA GTA ATA A-A AAA ATA ATA ATA ATA ATAA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
* * * *
92684420 ATA CATTA ATA ATA ATA ATA AT- ATG TTA ATA ACA ATA A-A TTA ATGA
1 ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * * *
92684466 ATTA ATA A-C ATA ACA GTA AGTAA ATA A-A CATA AAA ATA A-A ATA ATT
1 A-TA ATA ATA ATA ATA ATA A-T-A ATA ATA -ATA ATA ATA ATA ATA ATA
* * *
92684512 ATA ATA GTA ATA TTA ACA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
92684559 ATA ATA ATA ATA ATA ATA ATA ATA A-A ATG ATA ACA ATG ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
92684606 A-A ATA ATA GAAA ATA ATA ATA CATTA ATA ATA ATA TATG TTA ATA ACA
1 ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA ATA -ATA ATA ATA ATA
* * *
92684654 ATA ATA ATA TATA A-A ATA ATA AT- ATG GTA A-A AAA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
92684697 AT- GTA TTA ATA AGA ATG GTA ATA ATA A-A ATA A-G ATT ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
92684742 GTA TTA ATA AAA ATA GA-C ATA A-A A-A GATA GTA ATA ATA GTA ACA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* *** * *
92684786 ATA AGA GCG TTA ATA ATA ATA ATA ATA ATA ATA TTGA GAT- ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A -ATA ATA ATA
* *
92684831 A-A AGTA A-A TATA ATA A-A ATA TTA A-A ATA A-A GTA ATA A-A A-A
1 ATA A-TA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
92684871 ATA ATA CT- ATA TATA A-A TATA TATA CAT- ATA CGTA TATA ATA AAA
1 ATA ATA ATA ATA -ATA ATA -ATA -ATA -ATA ATA -ATA -ATA ATA ATA
92684916 AGT- ATA CACTA ATA TATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 A-TA ATA -A-TA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92684964 ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
92684985 CAAAAAGAAA
Statistics
Matches: 525, Mismatches: 116, Indels: 116
0.69 0.15 0.15
Matches are distributed among these distances:
2 52 0.10
3 410 0.78
4 53 0.10
5 10 0.02
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:92685103 original size:159 final size:157
Alignment explanation
Indices: 92684796--92685107 Score: 538
Period size: 159 Copynumber: 2.0 Consensus size: 157
92684786 ATAAGAGCGT
* *
92684796 TAATAATAATAATAATAATAATATTGAGATATAAAAAAGTAAATATAATAAAATATTAAAATAAA
1 TAATAATAATAATAATAATAATAATGAGATATAAAAAAGAAAATATAATAAAATATTAAAATAAA
*
92684861 GTAATAAAAAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACT
66 GTAATAAAAAATAATACTATATAAAAATATATATACATATACGTATATAATAAAAAGTATACACT
92684926 AATATATAATAATAATAATAATAATAA
131 AATATATAATAATAATAATAATAATAA
92684953 TAATAATAATAATAATAATAATAAT-A-ATAATACAAAAAGAAAATATAATAAAAATATTAAAAT
1 TAATAATAATAATAATAATAATAATGAGAT-ATA-AAAAAGAAAATATAAT-AAAATATTAAAAT
*
92685016 AAAGTAATAAAAAATAATACTATATACAAAATATATATGCATATACGTATATAATAAAAAGTATA
63 AAAGTAATAAAAAATAATACTATATA-AAAATATATATACATATACGTATATAATAAAAAGTATA
92685081 CACTAATATATAATAATAATAATAATA
127 CACTAATATATAATAATAATAATAATA
92685108 TTTAATAAAG
Statistics
Matches: 147, Mismatches: 4, Indels: 6
0.94 0.03 0.04
Matches are distributed among these distances:
155 2 0.01
156 4 0.03
157 39 0.27
158 39 0.27
159 63 0.43
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (157 bp):
TAATAATAATAATAATAATAATAATGAGATATAAAAAAGAAAATATAATAAAATATTAAAATAAA
GTAATAAAAAATAATACTATATAAAAATATATATACATATACGTATATAATAAAAAGTATACACT
AATATATAATAATAATAATAATAATAA
Found at i:92685786 original size:3 final size:3
Alignment explanation
Indices: 92685763--92686212 Score: 224
Period size: 3 Copynumber: 149.0 Consensus size: 3
92685753 TTTTTATGTC
* * * * * * *
92685763 TAT TTT TAT TAA TAC TAT TAT TA- TAA TCT TAT T-T TAT TAC TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
92685809 TCT TAT TAA TA- CAT TAT TAT TAT TTT TAC CA- TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
92685854 ATAT TAT TAT TGT TAT TAA CAT ATAT TAT TAT TAAT GTAT TAT TAT TTT
1 -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT -TAT TAT TAT TAT
*
92685903 CTAT TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TGT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
92685947 TAA TAT TAC TAT TAT AAT TAT T-T TAT TTT TAT GT-T TATT TACT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA-T TA-T TAT
* * * * * *
92685993 TGT TA- TGT TAT TAAT TCAT TAA T-T TAT TGT TAT TAA CA- TAT TAT
1 TAT TAT TAT TAT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
92686037 TAT TAT TGAT GTAT TAT TAT TAC TATT TAT TAT TAT TAT TAT TAT CAC
1 TAT TAT T-AT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * * *
92686085 TAG TAT TTT TAT TTT TAT TAC TAT TAT CAT TTT TAAA AAA AAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
* * * * * * *
92686131 TGT TAC TAT TAT TCT T-T TAC CATT TAA TACA TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA-T TAT TAT TAT TAT TAT
92686177 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92686213 AATATGTGTA
Statistics
Matches: 334, Mismatches: 86, Indels: 54
0.70 0.18 0.11
Matches are distributed among these distances:
2 20 0.06
3 278 0.83
4 34 0.10
5 2 0.01
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:92685828 original size:14 final size:14
Alignment explanation
Indices: 92685768--92685830 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
92685758 ATGTCTATTT
92685768 TTATTAATACTATTA
1 TTATTAATAC-ATTA
92685783 TTA-TAAT-C-TTA
1 TTATTAATACATTA
* *
92685794 TTTTATTACTATCATTC
1 --TTATTAATA-CATTA
92685811 TTATTAATACATTA
1 TTATTAATACATTA
92685825 TTATTA
1 TTATTA
92685831 TTTTTACCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
11 3 0.08
13 4 0.11
14 17 0.45
15 11 0.29
16 1 0.03
17 2 0.05
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.56
Consensus pattern (14 bp):
TTATTAATACATTA
Found at i:92686257 original size:12 final size:11
Alignment explanation
Indices: 92686161--92686257 Score: 65
Period size: 9 Copynumber: 9.6 Consensus size: 11
92686151 CATTTAATAC
92686161 ATATTAT-TAT
1 ATATTATATAT
92686171 -TATTAT-TAT
1 ATATTATATAT
92686180 -TATTAT-TAT
1 ATATTATATAT
92686189 -TATTAT-TAT
1 ATATTATATAT
92686198 -TATTAT-TAT
1 ATATTATATAT
92686207 -TATTATA-AT
1 ATATTATATAT
*
92686216 ATGTGTATATAT
1 ATAT-TATATAT
*
92686228 ATA-TATTTAT
1 ATATTATATAT
92686238 ATATTTATATAT
1 ATA-TTATATAT
92686250 AGTATTAT
1 A-TATTAT
92686258 TTTTAATTAC
Statistics
Matches: 76, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
9 44 0.58
10 11 0.14
11 4 0.05
12 15 0.20
13 2 0.03
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (11 bp):
ATATTATATAT
Found at i:92689150 original size:14 final size:14
Alignment explanation
Indices: 92689131--92689168 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
92689121 CTTATATAGT
*
92689131 GCGGTGGGGGGTGG
1 GCGGTGGGGGGAGG
92689145 GCGGTGGGGGGAGG
1 GCGGTGGGGGGAGG
92689159 G-GG-GGGGGGA
1 GCGGTGGGGGGA
92689169 TGAAAAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 7 0.30
13 2 0.09
14 14 0.61
ACGTcount: A:0.05, C:0.05, G:0.82, T:0.08
Consensus pattern (14 bp):
GCGGTGGGGGGAGG
Found at i:92689516 original size:2 final size:2
Alignment explanation
Indices: 92689509--92689540 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
92689499 TATTGCTCTC
92689509 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92689541 TCCTAGTATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92692717 original size:38 final size:38
Alignment explanation
Indices: 92692674--92692820 Score: 199
Period size: 38 Copynumber: 3.9 Consensus size: 38
92692664 ATAAAGTATG
* *
92692674 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAATA
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAATA
92692712 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAATA
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGG-AATA
* *
92692751 -TTTTAATTAACAATAAAACAAAATAGCATGGGGAGT-
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAATA
* * * *
92692787 GTTTTGATTAATAATAAAACAAAGTAGCATGGGG
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGG
92692821 GGAGTGGAAT
Statistics
Matches: 100, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
37 32 0.32
38 64 0.64
39 4 0.04
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.29
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGTATGGGGAATA
Found at i:92697306 original size:14 final size:14
Alignment explanation
Indices: 92697287--92697314 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
92697277 TTTACTTTCC
92697287 AGAGAGGTAGAAAA
1 AGAGAGGTAGAAAA
92697301 AGAGAGGTAGAAAA
1 AGAGAGGTAGAAAA
92697315 GAAAATCTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.36, T:0.07
Consensus pattern (14 bp):
AGAGAGGTAGAAAA
Found at i:92706032 original size:210 final size:210
Alignment explanation
Indices: 92705308--92706486 Score: 1560
Period size: 210 Copynumber: 5.7 Consensus size: 210
92705298 CTTTATCGGG
* * * * *
92705308 GCAGATCTAAGATAACAGATCTTATCTCTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
*
92705373 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTTTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
** * *
92705438 GAATGAATCGAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTGACCTT
131 GAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTT
92705501 CAGATGTTTATGCTGAA
194 CAGATGTTTATGCTGAA
* * ** * * * *
92705518 GCGGATCCAAGATG---G-T-TTGGCATC-CT-TGTGTT-TACAAGGAACAAATCGAAGACATAG
1 GCAGATCCAAGATGACAGATCTT---ATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAG
* *
92705575 CTGATTTGGCTTTCACGTGTTTACGTTGAAACAAATCTAAGATGATTTGTCGTCT-TGTATTGTC
63 CTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
*
92705639 AGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGATCTTACCT
128 AGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCT
*
92705704 TCA-ATGTTTACGCTGAA
193 TCAGATGTTTATGCTGAA
*
92705721 GCAGATCCAAGATGACAGATCTTATCTC-CTGTATTCGGTAGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
92705785 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
*
92705850 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACTTTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
92705915 GATGTTTATGCTGAA
196 GATGTTTATGCTGAA
92705930 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
** *
92705995 ATTTGGCTTTCACGTGTTTTTGATGAAGCAAATCTAAGATGATTTGTCGACTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* *
92706060 GAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCCTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
*
92706125 GATGTTTACGCTGAA
196 GATGTTTATGCTGAA
* *
92706140 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAACAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
* *
92706205 ATTTGGCTTTCACATGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
** * * * **
92706270 GAATGAATCAAAGTTTGGCATCTT-CACTTTGATCG-AGAGCAGACACATAGCAGATCTCGCCTT
131 GAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTT
*
92706333 CGGATGTTTATGCTGAA
194 CAGATGTTTATGCTGAA
* ** * *** * * *
92706350 GCGGATCCAAGATG---G-T-TTGGCATC-CT-TATGCTTATAAGGAGCAAATTG-A-ATCATAG
1 GCAGATCCAAGATGACAGATCTTATC-TCTCTGTATTC-GGCAGGGAGCAGATCGAAGAT-ATAG
* * * * * * *
92706406 TTGATTTGGCTTTCACATGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
63 CTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
*
92706471 AGGGAACAAATCGAAG
128 AGAGAACAAATCGAAG
92706487 AAGCAGATTT
Statistics
Matches: 869, Mismatches: 79, Indels: 48
0.87 0.08 0.05
Matches are distributed among these distances:
203 30 0.03
204 145 0.17
205 91 0.10
206 16 0.02
207 76 0.09
208 80 0.09
209 43 0.05
210 386 0.44
211 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (210 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
GATGTTTATGCTGAA
Found at i:92706611 original size:44 final size:45
Alignment explanation
Indices: 92706561--92706657 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
92706551 AGTTTGCAAT
* * *
92706561 GAGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGG
1 GAGCAGATTGAAGATAACAAATTTGGCGTCTCTATAGTAGACGGG
* *
92706605 GAGCAGATTGAAGATAATAGATTTGGCGTCTCTATAGTAGACGGG
1 GAGCAGATTGAAGATAACAAATTTGGCGTCTCTATAGTAGACGGG
*
92706650 GGGCAGAT
1 GAGCAGAT
92706658 CAAAGATAGC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 14 0.30
45 32 0.70
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.25
Consensus pattern (45 bp):
GAGCAGATTGAAGATAACAAATTTGGCGTCTCTATAGTAGACGGG
Found at i:92706631 original size:420 final size:411
Alignment explanation
Indices: 92705308--92706486 Score: 1658
Period size: 412 Copynumber: 2.8 Consensus size: 411
92705298 CTTTATCGGG
* * * * * *
92705308 GCAGATCTAAGATAACAGATCTTATCTCTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCGAAGATATA--CG
*
92705373 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTTTCTGTATTGTCAGA
64 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
92705438 GAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTGACCTTCA
129 GAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTG-CCTTCA
* * *
92705503 GATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA
193 GATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGCAAATCGAA
* *
92705568 GACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAA-CAAATCTAAGATGATTTGTCGTCT-T
258 -TCATAGCTGATTTGGCTTTCACGTGTTTACGTT-AAAGCAAATCTAAGATGATTTGTCATCTCT
*
92705631 GTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGA
321 GTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGA
*
92705696 TCTTACCTTCA-ATGTTTACGCTGAA
386 TCTTACCCTCAGATGTTTACGCTGAA
**
92705721 GCAGATCCAAGATGACAGATCTTATCTC-CTGTATTCGGTAGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCGAAGATATA-C-G
92705785 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
64 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
** * * *
92705850 GAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGA-AGGCAGACACATAGCAGATCTTACTTT
129 GAATGAATCGAAGTTTGGCATCTT-CACTTTGATGGAGA-GCAGACACATAGCAGATC-TGCCTT
* ** * ** *
92705913 CAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATC-TCTCTGTATTC-GGCAGGGAG
191 CAGATGTTTATGCTGAAGCGGATCCAAGATG---G-T-TTGGCATC-CT-TATGCTTACAAGGAG
* ** * *
92705976 CAGATCGAAGAT-ATAGCTGATTTGGCTTTCACGTGTTTTTGATGAAGCAAATCTAAGATGATTT
249 CAAATCG-A-ATCATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTT
*
92706040 GTCGA-CTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGAC
312 GTC-ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGAC
92706104 ACATAGCAGATCTTACCCTCAGATGTTTACGCTGAA
376 ACATAGCAGATCTTACCCTCAGATGTTTACGCTGAA
*
92706140 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAACAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCGAAGATATA-C-G
* *
92706205 ATTTGGCTTTCACATGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
64 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* * *
92706270 GAATGAATCAAAGTTTGGCATCTTCACTTTGATCGAGAGCAGACACATAGCAGATCTCGCCTTCG
129 GAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCT-GCCTTCA
* *
92706335 GATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTATGCTTATAAGGAGCAAATTGAA
193 GATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGCAAATCGAA
* * * *
92706400 TCATAGTTGATTTGGCTTTCACATGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGT
258 TCATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGTCATCTCTGT
*
92706465 ATTGTCAGGGAACAAATCGAAG
323 ATTGTCAGAGAACAAATCGAAG
92706487 AAGCAGATTT
Statistics
Matches: 675, Mismatches: 66, Indels: 49
0.85 0.08 0.06
Matches are distributed among these distances:
411 3 0.00
412 175 0.26
413 30 0.04
414 78 0.12
415 16 0.02
416 8 0.01
417 67 0.10
418 77 0.11
419 44 0.07
420 174 0.26
421 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (411 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCGAAGATATACGAT
TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
ATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTGCCTTCAGAT
GTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGCAAATCGAATCA
TAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGTCATCTCTGTATT
GTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTA
CCCTCAGATGTTTACGCTGAA
Found at i:92708009 original size:38 final size:38
Alignment explanation
Indices: 92707876--92708023 Score: 190
Period size: 39 Copynumber: 3.8 Consensus size: 38
92707866 TAAAGTATGG
* * *
92707876 TTTAATTAATAATAAAACAAAATAGTATGAGGAAGTAGT
1 TTTAATTAACAATAAAACAAAATAGCATG-GGGAGTAGT
* *
92707915 TTTAATTAACAATAAAACAAAATAGTATGGGGAAATAGT
1 TTTAATTAACAATAAAACAAAATAGCATGGGG-AGTAGT
92707954 TTTAATTAACAATAAAACAAAATAGCATGGGGAGT-GTT
1 TTTAATTAACAATAAAACAAAATAGCATGGGGAGTAG-T
* * *
92707992 TTTGATTAATAATAAAACAAAGTAGCATGGGG
1 TTTAATTAACAATAAAACAAAATAGCATGGGG
92708024 GAGTGGAATC
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 34 0.34
39 64 0.65
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.29
Consensus pattern (38 bp):
TTTAATTAACAATAAAACAAAATAGCATGGGGAGTAGT
Found at i:92708025 original size:78 final size:78
Alignment explanation
Indices: 92707876--92708023 Score: 210
Period size: 77 Copynumber: 1.9 Consensus size: 78
92707866 TAAAGTATGG
* * *
92707876 TTTAATTAATAATAAAACAAAATAGTATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATAGT
1 TTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATAGC
92707941 ATGGGGAAATAGT
66 ATGGGGAAATAGT
* * * *
92707954 TTTAATTAACAATAAAACAAAATAGCATG-GGGAGT-GTTTTTGATTAATAATAAAACAAAGTAG
1 TTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAG-TTTTAATTAACAATAAAACAAAATAG
92708017 CATGGGG
65 CATGGGG
92708024 GAGTGGAATC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
76 1 0.02
77 34 0.55
78 27 0.44
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.29
Consensus pattern (78 bp):
TTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATAGC
ATGGGGAAATAGT
Found at i:92708763 original size:18 final size:20
Alignment explanation
Indices: 92708740--92708778 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
92708730 TTAATAGTTG
92708740 TTTCTAATAT-TATG-ATTA
1 TTTCTAATATGTATGTATTA
92708758 TTTCTAATATGTATGTATTA
1 TTTCTAATATGTATGTATTA
92708778 T
1 T
92708779 GTATTTACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 4 0.21
20 5 0.26
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTCTAATATGTATGTATTA
Found at i:92709700 original size:21 final size:19
Alignment explanation
Indices: 92709662--92709700 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
92709652 ACTCCCATTT
*
92709662 TCATTTTTAAAATCGATTC
1 TCATTTTCAAAATCGATTC
92709681 TCATTTTCCAAAACTCGATT
1 TCATTTT-CAAAA-TCGATT
92709701 TGAAAATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
TCATTTTCAAAATCGATTC
Found at i:92712504 original size:50 final size:50
Alignment explanation
Indices: 92712374--92712572 Score: 222
Period size: 50 Copynumber: 4.0 Consensus size: 50
92712364 AGCCGAAGCT
* * * *
92712374 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCACC
*
92712422 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCACC
** * * * **
92712473 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCA-CC
* * * *
92712524 TTCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTCAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCAC
92712573 AATAGATCAT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 38 0.30
50 44 0.35
51 43 0.34
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCACC
Found at i:92712559 original size:101 final size:99
Alignment explanation
Indices: 92712386--92712572 Score: 277
Period size: 101 Copynumber: 1.9 Consensus size: 99
92712376 CTGGTACGCA
* * *
92712386 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
92712451 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* *
92712485 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
92712549 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
92712573 AATAGATCAT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.38
101 44 0.56
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:92715421 original size:42 final size:42
Alignment explanation
Indices: 92715302--92715428 Score: 155
Period size: 42 Copynumber: 3.0 Consensus size: 42
92715292 TACACAGTAC
* *
92715302 CATACCAATGCCATATCCCAAATATGGTCTTACATGAAATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
* ** *
92715344 CATATCAATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCT
1 CATATCAATGCC-ATATCCCAAATATGGTCTTACACGAAATCT
* * * *
92715387 CGTATCGATGCCATATCCCATATATGGTCTTACACGTAATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
92715429 TAGTACCCCT
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 36 0.51
43 35 0.49
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
Found at i:92720872 original size:31 final size:31
Alignment explanation
Indices: 92720834--92720897 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
92720824 CCTTTTCATA
92720834 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
92720865 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
92720896 TT
1 TT
92720898 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:92721166 original size:47 final size:48
Alignment explanation
Indices: 92721103--92721207 Score: 158
Period size: 47 Copynumber: 2.2 Consensus size: 48
92721093 CTAGAGGCCT
92721103 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
* ** *
92721152 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGTATA
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
92721199 AGCCCTTTT
1 AGCCCTTTT
92721208 TCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 43 0.83
48 5 0.10
49 4 0.08
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
Found at i:92721168 original size:23 final size:24
Alignment explanation
Indices: 92721103--92721207 Score: 158
Period size: 24 Copynumber: 4.4 Consensus size: 24
92721093 CTAGAGGCCT
*
92721103 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
92721128 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
92721152 AGCCCTTTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
92721175 AGCCCTTTTGATAACTGGGGTATA
1 AGCCCTTTTAATAACTGGGGCATA
92721199 AGCCCTTTT
1 AGCCCTTTT
92721208 TCACTTCCTC
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
23 23 0.31
24 48 0.64
25 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:92721283 original size:20 final size:20
Alignment explanation
Indices: 92721258--92721317 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
92721248 TATGATTACC
92721258 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
92721278 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
92721298 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
92721318 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:92721288 original size:11 final size:11
Alignment explanation
Indices: 92721258--92721312 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
92721248 TATGATTACC
92721258 TCATGTGCATA
1 TCATGTGCATA
*
92721269 TCA--TACATA
1 TCATGTGCATA
92721278 TCATGTGCATA
1 TCATGTGCATA
* *
92721289 TCA--TACATT
1 TCATGTGCATA
92721298 TCATGTGCATA
1 TCATGTGCATA
92721309 TCAT
1 TCAT
92721313 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:92721392 original size:25 final size:25
Alignment explanation
Indices: 92721360--92721407 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
92721350 ATACATAAAC
* * *
92721360 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
92721385 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
92721408 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:92728813 original size:17 final size:17
Alignment explanation
Indices: 92728791--92728827 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
92728781 GGTCATTTAA
92728791 GTTGGCTTAAATGTTGT
1 GTTGGCTTAAATGTTGT
92728808 GTTGGCTTAAATGTTGT
1 GTTGGCTTAAATGTTGT
92728825 GTT
1 GTT
92728828 TGATAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.05, G:0.30, T:0.49
Consensus pattern (17 bp):
GTTGGCTTAAATGTTGT
Found at i:92734885 original size:40 final size:40
Alignment explanation
Indices: 92734777--92734986 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
92734767 CGGGATTTAA
* * * * *
92734777 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
92734817 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92734857 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92734897 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92734937 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92734977 CCGGATATAT
1 CCGGATATAT
92734987 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:92745950 original size:40 final size:40
Alignment explanation
Indices: 92745905--92746034 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
92745895 CGGAATACAA
92745905 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
92745945 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
92745985 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
92746025 CCGGATATAA
1 CCGGATATAA
92746035 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:92746049 original size:40 final size:40
Alignment explanation
Indices: 92745905--92746068 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
92745895 CGGAATACAA
* **
92745905 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
92745945 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
92745985 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
92746025 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
92746065 CCGG
1 CCGG
92746069 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:92749618 original size:28 final size:28
Alignment explanation
Indices: 92749558--92749610 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
92749548 AAAATAATTA
**
92749558 AAATTAAATATTTTAATAATTTGAGTTC
1 AAATTAAATATTTTAATAATTAAAGTTC
92749586 AAATTAAATATTTT-ATAATTAAAGT
1 AAATTAAATATTTTAATAATTAAAGT
92749611 ATGAAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (28 bp):
AAATTAAATATTTTAATAATTAAAGTTC
Found at i:92751809 original size:15 final size:16
Alignment explanation
Indices: 92751782--92751811 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
92751772 AATAAAAATT
92751782 AATATATATTATATAA
1 AATATATATTATATAA
92751798 AATATA-ATTATATA
1 AATATATATTATATA
92751812 TTAGTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:92752263 original size:14 final size:15
Alignment explanation
Indices: 92752237--92752266 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
92752227 ATGAGCGAGG
92752237 TTTTATCCCCCTCAA
1 TTTTATCCCCCTCAA
92752252 TTTTAT-CCCCTCAA
1 TTTTATCCCCCTCAA
92752266 T
1 T
92752267 AATGTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTTATCCCCCTCAA
Found at i:92755539 original size:234 final size:234
Alignment explanation
Indices: 92755130--92755596 Score: 934
Period size: 234 Copynumber: 2.0 Consensus size: 234
92755120 ATATTTTTGG
92755130 CTAGTTTTGTGAATAAATTTGGGTGAAAAGAGATAGTATTTTGAGAAGGAAATTTGTTGAATCTA
1 CTAGTTTTGTGAATAAATTTGGGTGAAAAGAGATAGTATTTTGAGAAGGAAATTTGTTGAATCTA
92755195 TTCTCTAGTGATAGATCTTTAAAACCATGCAAAGGAAATGAATTTTATAGCTCTCTAATATGATG
66 TTCTCTAGTGATAGATCTTTAAAACCATGCAAAGGAAATGAATTTTATAGCTCTCTAATATGATG
92755260 TAAATGGAGTGAAAAGTAGGCTAGATGCATTATGTTTAAAACTGAAACAACCTACTAGAAATTTA
131 TAAATGGAGTGAAAAGTAGGCTAGATGCATTATGTTTAAAACTGAAACAACCTACTAGAAATTTA
92755325 AAAATTGGGAAATTTGCCCAATGGCCACTCCCACATTTA
196 AAAATTGGGAAATTTGCCCAATGGCCACTCCCACATTTA
92755364 CTAGTTTTGTGAATAAATTTGGGTGAAAAGAGATAGTATTTTGAGAAGGAAATTTGTTGAATCTA
1 CTAGTTTTGTGAATAAATTTGGGTGAAAAGAGATAGTATTTTGAGAAGGAAATTTGTTGAATCTA
92755429 TTCTCTAGTGATAGATCTTTAAAACCATGCAAAGGAAATGAATTTTATAGCTCTCTAATATGATG
66 TTCTCTAGTGATAGATCTTTAAAACCATGCAAAGGAAATGAATTTTATAGCTCTCTAATATGATG
92755494 TAAATGGAGTGAAAAGTAGGCTAGATGCATTATGTTTAAAACTGAAACAACCTACTAGAAATTTA
131 TAAATGGAGTGAAAAGTAGGCTAGATGCATTATGTTTAAAACTGAAACAACCTACTAGAAATTTA
92755559 AAAATTGGGAAATTTGCCCAATGGCCACTCCCACATTT
196 AAAATTGGGAAATTTGCCCAATGGCCACTCCCACATTT
92755597 CCCTTACTTT
Statistics
Matches: 233, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
234 233 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (234 bp):
CTAGTTTTGTGAATAAATTTGGGTGAAAAGAGATAGTATTTTGAGAAGGAAATTTGTTGAATCTA
TTCTCTAGTGATAGATCTTTAAAACCATGCAAAGGAAATGAATTTTATAGCTCTCTAATATGATG
TAAATGGAGTGAAAAGTAGGCTAGATGCATTATGTTTAAAACTGAAACAACCTACTAGAAATTTA
AAAATTGGGAAATTTGCCCAATGGCCACTCCCACATTTA
Found at i:92759828 original size:49 final size:49
Alignment explanation
Indices: 92759774--92759898 Score: 187
Period size: 49 Copynumber: 2.6 Consensus size: 49
92759764 CTGGTACGCA
* **
92759774 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACG
* * *
92759823 TAGTAGCTTGCATTTAGTACTACACACATGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACG
*
92759872 TAGCAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
92759899 GTGTAACACC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACG
Found at i:92766651 original size:24 final size:24
Alignment explanation
Indices: 92766624--92766686 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
92766614 CTTATTATGT
92766624 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
92766648 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
92766672 TCGCACACATAGTGC
1 TCGCACACATAGTGC
92766687 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:92774511 original size:24 final size:24
Alignment explanation
Indices: 92774484--92774546 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
92774474 CTTATTATGT
92774484 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
92774508 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
92774532 TCGCACACATAGTGC
1 TCGCACACATAGTGC
92774547 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:92779504 original size:40 final size:40
Alignment explanation
Indices: 92779408--92779613 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
92779398 CGAATGGTAT
* * * * *
92779408 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
92779449 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
92779489 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
92779529 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
92779569 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
92779609 CCGGG
1 CCGGG
92779614 CTATGTCTCG
Statistics
Matches: 145, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 121 0.83
41 24 0.17
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:92779626 original size:120 final size:121
Alignment explanation
Indices: 92779408--92779626 Score: 316
Period size: 120 Copynumber: 1.8 Consensus size: 121
92779398 CGAATGGTAT
* *
92779408 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
92779473 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAA
66 GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAA
* * *
92779529 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * * *
92779592 TGTGCGAATTACTATAACCGGGCTATGTCTCGAAG
65 TGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
92779627 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
119 1 0.01
120 59 0.69
121 26 0.30
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAA
Found at i:92779639 original size:80 final size:80
Alignment explanation
Indices: 92779408--92779640 Score: 198
Period size: 80 Copynumber: 2.9 Consensus size: 80
92779398 CGAATGGTAT
** * * * * * * *
92779408 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGG-TCAATTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TTACCAAAACCGGGCT-AAGTCCCGAAGACAAT
* *
92779472 TGTGCGAGTTACCAAAA
64 CGAGCGAGTTACCAAAA
* * * * * * * *
92779489 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCG
* * *
92779554 TGCGAGTTACTAAAT
66 AGCGAGTTACCAAAA
* * * * *
92779569 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCTCGAAGACAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCG
92779634 AGCGAGT
66 AGCGAGT
92779641 CGCTATATCC
Statistics
Matches: 126, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 99 0.79
81 27 0.21
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCG
AGCGAGTTACCAAAA
Found at i:92785457 original size:18 final size:19
Alignment explanation
Indices: 92785421--92785459 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
92785411 TAGTCATGTG
*
92785421 ATTTGGTTTATTTAGATAT
1 ATTTGGTTTATGTAGATAT
*
92785440 ATTTGG-TTATGTATATAT
1 ATTTGGTTTATGTAGATAT
92785458 AT
1 AT
92785460 ATGTGCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.56
Consensus pattern (19 bp):
ATTTGGTTTATGTAGATAT
Found at i:92791497 original size:88 final size:88
Alignment explanation
Indices: 92791348--92791518 Score: 263
Period size: 88 Copynumber: 1.9 Consensus size: 88
92791338 TCACTCATCT
* *
92791348 CCATAAACAATCTAAGGTGAATGTGAGGATCCTTAGTTGGCATTCTACTGAATTGACCCACTGAA
1 CCATAAACAATCTAAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATTGACCCACTGAA
* *
92791413 TGAAGCTTCAGGAGCATGTTGCC
66 TGAAGCATCAGGAACATGTTGCC
* * *
92791436 CCATAATCAATCTGAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATT-AGCCCACTGT
1 CCATAAACAATCTAAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATTGA-CCCACTGA
92791500 ATGAAGCATCAGGAACATG
65 ATGAAGCATCAGGAACATG
92791519 ACTGGCTTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
87 1 0.01
88 74 0.99
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (88 bp):
CCATAAACAATCTAAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATTGACCCACTGAA
TGAAGCATCAGGAACATGTTGCC
Found at i:92795095 original size:40 final size:40
Alignment explanation
Indices: 92795033--92795330 Score: 359
Period size: 40 Copynumber: 7.5 Consensus size: 40
92795023 AATCCAAGTA
* * * * *
92795033 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCGCTCGAGTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
92795072 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
92795112 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * * *
92795152 CCTTCGGGACTTAGCTTGGATGTAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
92795192 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
92795232 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * **
92795272 CCTTCGGGACTTGGCCCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
92795312 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
92795331 TTATCATCCG
Statistics
Matches: 230, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.05
40 218 0.95
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:92798862 original size:23 final size:23
Alignment explanation
Indices: 92798811--92798887 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
92798801 CTTGATCAGT
** *
92798811 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
* *
92798833 A-ATGACACACGAGGTGCCTGAT
1 ATACGACACACGAGGTGCCTGAA
92798855 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
92798878 ATACGACACA
1 ATACGACACA
92798888 TAAAGTACCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
21 14 0.30
22 3 0.07
23 29 0.63
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.16
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:92798898 original size:23 final size:23
Alignment explanation
Indices: 92798811--92798899 Score: 83
Period size: 23 Copynumber: 4.0 Consensus size: 23
92798801 CTTGATCAGT
*
92798811 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* * * *
92798833 A-ATGACACACGAGGTGCCTGAT
1 ATACGACACACAAAGTGCCTGAA
* *
92798855 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
92798878 ATACGACACATAAAGTACCTGA
1 ATACGACACACAAAGTGCCTGA
92798900 TCGATAAAGC
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
21 14 0.26
22 3 0.06
23 37 0.69
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:92799296 original size:15 final size:15
Alignment explanation
Indices: 92799271--92799328 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
92799261 TCATATATAT
92799271 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
92799287 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
92799302 AATAATTTCAATCAA
1 TATAAATTCAATCAA
92799317 TATAAATTCAAT
1 TATAAATTCAAT
92799329 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:92804473 original size:27 final size:28
Alignment explanation
Indices: 92804443--92804512 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
92804433 ATAATAAGTC
*
92804443 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
92804470 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
92804498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92804513 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:92812541 original size:27 final size:28
Alignment explanation
Indices: 92812511--92812580 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
92812501 ATAATAAGTC
*
92812511 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
92812538 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
92812566 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92812581 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:92816584 original size:21 final size:23
Alignment explanation
Indices: 92816556--92816619 Score: 87
Period size: 21 Copynumber: 2.9 Consensus size: 23
92816546 CCTGATCAGT
92816556 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTAAA
** *
92816578 A-ACGACACACGAGGTGCCTAAA
1 ATACGACACATAAAGTGCCTAAA
92816600 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
92816620 GATCGATAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 15 0.44
22 4 0.12
23 15 0.44
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.16
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTAAA
Found at i:92817017 original size:15 final size:15
Alignment explanation
Indices: 92816992--92817049 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
92816982 TCATATATAT
92816992 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
92817008 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
92817023 AATAATTTCAATCAA
1 TATAAATTCAATCAA
92817038 TATAAATTCAAT
1 TATAAATTCAAT
92817050 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:92818313 original size:9 final size:9
Alignment explanation
Indices: 92818299--92818331 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
92818289 GTTTCCTTCC
92818299 TTCTTTT-T
1 TTCTTTTGT
92818307 ATTCTTTTGT
1 -TTCTTTTGT
92818317 TTCTTTTGT
1 TTCTTTTGT
92818326 TTCTTT
1 TTCTTT
92818332 CCTTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 22 0.96
10 1 0.04
ACGTcount: A:0.03, C:0.12, G:0.06, T:0.79
Consensus pattern (9 bp):
TTCTTTTGT
Found at i:92819105 original size:13 final size:13
Alignment explanation
Indices: 92819087--92819111 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92819077 ATAGATGAAG
92819087 GATTGGTAAAGGT
1 GATTGGTAAAGGT
92819100 GATTGGTAAAGG
1 GATTGGTAAAGG
92819112 ATTGGTACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.40, T:0.28
Consensus pattern (13 bp):
GATTGGTAAAGGT
Found at i:92819114 original size:11 final size:11
Alignment explanation
Indices: 92819084--92819118 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
92819074 ATGATAGATG
92819084 AAGGATTGGTA
1 AAGGATTGGTA
92819095 AAGGTGATTGGTA
1 AA-G-GATTGGTA
92819108 AAGGATTGGTA
1 AAGGATTGGTA
92819119 CCCATGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.45
12 2 0.09
13 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.37, T:0.29
Consensus pattern (11 bp):
AAGGATTGGTA
Found at i:92822577 original size:40 final size:40
Alignment explanation
Indices: 92822450--92822579 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
92822440 ATGCTGGAAA
* *
92822450 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
92822490 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
92822530 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
92822570 TTATATCCGG
1 TTATATCCGG
92822580 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:92826442 original size:34 final size:35
Alignment explanation
Indices: 92826384--92826455 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
92826374 CGTATCCTAG
*
92826384 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTATTACC
* *
92826419 CTACTGTCTCAGT-TTCTATAGTTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
92826453 CTA
1 CTA
92826456 ACTATAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.21
34 14 0.42
35 12 0.36
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
Found at i:92827547 original size:61 final size:61
Alignment explanation
Indices: 92827428--92827576 Score: 148
Period size: 60 Copynumber: 2.5 Consensus size: 61
92827418 CTATTCAGAA
* * *
92827428 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATTTGGGCCATAGCCCCTTACAGT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATATGGGCCATAGCCCATTACAGT
* * * *
92827489 ATCAGAG-TATACTGGGCC-TAGCCCATGTCAGTATCAATATGGGTCGTAGCCCTATTACA--
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATATGGGCCATAGCCC-ATTACAGT
*
92827548 AGTC-GAGTTATATTGGGCCTT-GCCCATAT
1 A-TCAGAGTTA-ACTGGGCCTTAGCCCATAT
92827577 TAACACAGTT
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
59 4 0.05
60 49 0.66
61 21 0.28
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (61 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATATGGGCCATAGCCCATTACAGT
Found at i:92830061 original size:40 final size:40
Alignment explanation
Indices: 92830001--92830184 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
92829991 TATTCAAATG
*
92830001 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
92830041 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
92830081 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
92830121 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
92830161 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
92830185 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:92830134 original size:80 final size:80
Alignment explanation
Indices: 92830001--92830184 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
92829991 TATTCAAATG
* * *
92830001 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
92830065 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* * *
92830081 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
92830146 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
92830161 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
92830185 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:92830488 original size:22 final size:22
Alignment explanation
Indices: 92830446--92830490 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
92830436 AAAATGTGCA
* *
92830446 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
92830468 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
92830490 T
1 T
92830491 GAAACTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:92840610 original size:79 final size:82
Alignment explanation
Indices: 92840470--92840654 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
92840460 TCGAATGATG
* * *
92840470 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
92840534 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
92840550 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
92840612 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
92840630 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92840655 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:92840662 original size:40 final size:40
Alignment explanation
Indices: 92840471--92840662 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
92840461 CGAATGATGT
* * * * *
92840471 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
92840511 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
92840551 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
92840590 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
92840630 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
92840663 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:92840685 original size:79 final size:79
Alignment explanation
Indices: 92840470--92840687 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
92840460 TCGAATGATG
* * * * ** *
92840470 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
92840533 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
92840550 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
92840615 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
92840630 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
92840688 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:92848567 original size:39 final size:40
Alignment explanation
Indices: 92848467--92848646 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 40
92848457 TCGAATGATG
* * *
92848467 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
92848507 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
*
92848547 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * *
92848586 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
92848627 -CCGGGCTTCGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
92848647 TTTGAGCGAG
Statistics
Matches: 115, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 33 0.29
40 73 0.63
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:92848607 original size:79 final size:80
Alignment explanation
Indices: 92848467--92848650 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 80
92848457 TCGAATGATG
* * *
92848467 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
92848532 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
92848547 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
92848609 TCGTGCGAGTCACTATAA
64 TCGTGCGAGTTAATA-AA
**
92848627 -CCGGGCTTCGTCCCGAAGGCTTTG
1 TCCGGGCTAAGTCCCGAAGGCTTTG
92848651 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 29 0.32
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:92856305 original size:24 final size:24
Alignment explanation
Indices: 92856273--92856503 Score: 372
Period size: 24 Copynumber: 9.6 Consensus size: 24
92856263 TATCTCAAAT
*
92856273 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
92856297 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
92856321 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
92856345 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
92856369 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
92856393 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
92856417 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
92856441 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
92856465 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
92856489 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
92856504 ACATAATAAG
Statistics
Matches: 203, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 203 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:92860788 original size:39 final size:39
Alignment explanation
Indices: 92860670--92860852 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
92860660 TCGTTCAAAC
* * ** * **
92860670 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
92860710 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
92860750 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
*
92860789 GCCTTCGGACTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
92860828 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
92860853 CTCGGACATT
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:92862414 original size:46 final size:46
Alignment explanation
Indices: 92862361--92862536 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
92862351 TATTTGGGCA
92862361 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
92862407 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
92862454 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
92862500 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92862537 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:92862516 original size:93 final size:93
Alignment explanation
Indices: 92862357--92862528 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92862347 GGGATATTTG
* *
92862357 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92862422 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
92862450 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92862515 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
92862529 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:92865507 original size:15 final size:15
Alignment explanation
Indices: 92865487--92865555 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
92865477 GTATCTTGGG
92865487 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
92865502 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
92865517 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
92865532 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
92865547 TTTCTTTAT
1 TTTCTTTAT
92865556 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:92865556 original size:30 final size:30
Alignment explanation
Indices: 92865478--92865565 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
92865468 CATAGTATCG
* * * *
92865478 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
92865508 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
92865538 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
92865566 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:92867998 original size:46 final size:46
Alignment explanation
Indices: 92867948--92868123 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
92867938 TATTTGGGCA
92867948 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
92867994 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
92868041 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
92868087 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92868124 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:92868103 original size:93 final size:93
Alignment explanation
Indices: 92867944--92868115 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92867934 TGGATATTTG
* *
92867944 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92868009 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
92868037 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92868102 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
92868116 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:92876580 original size:39 final size:39
Alignment explanation
Indices: 92876462--92876644 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
92876452 TCGTTCAAAC
* * ** * **
92876462 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
92876502 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
92876542 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
92876581 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
92876620 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
92876645 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:92883082 original size:29 final size:29
Alignment explanation
Indices: 92883049--92883179 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
92883039 GTGACGAGAT
92883049 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
92883078 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
92883107 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
92883136 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
92883165 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
92883180 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:92900838 original size:45 final size:45
Alignment explanation
Indices: 92900789--92900878 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
92900779 TTAATGTAAA
*
92900789 AAAATTCAGTTGATTTTATTTTATTAAAAAATTAAAATAAATTAT
1 AAAATTCAGTTGATTTTATTTTATTAAAAAAATAAAATAAATTAT
*
92900834 AAAATTCAGTTGGTTTTATTTTATTAAAAAAATAAAATAAATTAT
1 AAAATTCAGTTGATTTTATTTTATTAAAAAAATAAAATAAATTAT
92900879 TCTTTAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (45 bp):
AAAATTCAGTTGATTTTATTTTATTAAAAAAATAAAATAAATTAT
Found at i:92905927 original size:17 final size:17
Alignment explanation
Indices: 92905875--92905954 Score: 63
Period size: 17 Copynumber: 4.6 Consensus size: 17
92905865 TAAATAATAG
* *
92905875 AATATGTAAATTTAAAA
1 AATATATAAAATTAAAA
* * * *
92905892 AATTTAAAAGAACTCAAA
1 AATATATAA-AATTAAAA
*
92905910 AGTATATAAAATTAAAA
1 AATATATAAAATTAAAA
*
92905927 ATTATGA-AAAATTAAAA
1 AATAT-ATAAAATTAAAA
92905944 AATATATAAAA
1 AATATATAAAA
92905955 AATGTAAAAA
Statistics
Matches: 47, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
16 1 0.02
17 34 0.72
18 12 0.26
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.29
Consensus pattern (17 bp):
AATATATAAAATTAAAA
Found at i:92908146 original size:19 final size:20
Alignment explanation
Indices: 92908104--92908146 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
92908094 CTTATGAATT
92908104 TTTTAATTATTAATTATTAA
1 TTTTAATTATTAATTATTAA
92908124 -TTTAATATATT-ATTA-TAA
1 TTTTAAT-TATTAATTATTAA
92908142 TTTTA
1 TTTTA
92908147 TCTTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.14
19 14 0.67
20 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTAATTATTAATTATTAA
Found at i:92919214 original size:30 final size:30
Alignment explanation
Indices: 92919178--92919239 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
92919168 CAAACTCCCT
92919178 AAACGATAACTCTATTAAATTAGCTGAAAA
1 AAACGATAACTCTATTAAATTAGCTGAAAA
*
92919208 AAACGATAACTCTATTAGATTAGCTGAAAA
1 AAACGATAACTCTATTAAATTAGCTGAAAA
92919238 AA
1 AA
92919240 CAACACCTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26
Consensus pattern (30 bp):
AAACGATAACTCTATTAAATTAGCTGAAAA
Found at i:92920989 original size:22 final size:23
Alignment explanation
Indices: 92920964--92921028 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
92920954 TATTGAAAAT
*
92920964 ACATGTTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
92920986 ACATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
*
92921010 ACATTTTACATAATATATA
1 ACATATT-CATAATATATA
92921029 CACATATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
22 12 0.33
23 5 0.14
24 12 0.33
25 7 0.19
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:92921022 original size:25 final size:23
Alignment explanation
Indices: 92920971--92921026 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 23
92920961 AATACATGTT
92920971 CATAATAT-ATATAAAACATATA
1 CATAATATAATATAAAACATATA
* *
92920993 TATAATATAATATTAAAACATTTTA
1 CATAATATAATA-TAAAACA-TATA
92921018 CATAATATA
1 CATAATATA
92921027 TACACATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.25
23 3 0.11
24 7 0.25
25 11 0.39
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (23 bp):
CATAATATAATATAAAACATATA
Found at i:92921105 original size:21 final size:18
Alignment explanation
Indices: 92921061--92921105 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
92921051 AAAAACATAT
92921061 TAATATTAATAATAATAC
1 TAATATTAATAATAATAC
92921079 TAATATTACATAAATATATAC
1 TAATATTA-AT-AATA-ATAC
*
92921100 TTATAT
1 TAATAT
92921106 ATATATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 4 0.17
21 9 0.39
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATATTAATAATAATAC
Found at i:92921644 original size:12 final size:12
Alignment explanation
Indices: 92921627--92921774 Score: 100
Period size: 12 Copynumber: 12.1 Consensus size: 12
92921617 ATAACAAAAG
*
92921627 TACATACTAATA
1 TACATAATAATA
92921639 TACATAATAATAA
1 TACATAATAAT-A
92921652 TA-ATAATAATAA
1 TACATAATAAT-A
92921664 TA-ATAATAATAA
1 TACATAATAAT-A
92921676 TA-ATAATAATAA
1 TACATAATAAT-A
92921688 TA-ATAATAATAA
1 TACATAATAAT-A
92921700 TA-ATAATAATAA
1 TACATAATAAT-A
92921712 TA-ATAATGATAATGA
1 TACAT-A--ATAAT-A
92921727 TA-ATAATAATAA
1 TACATAATAAT-A
92921739 TA-ATAATAATAA
1 TACATAATAAT-A
92921751 TA-ATAATAATA
1 TACATAATAATA
92921762 -ACATCAATAATA
1 TACAT-AATAATA
92921774 T
1 T
92921775 GAAAATAACA
Statistics
Matches: 126, Mismatches: 3, Indels: 13
0.89 0.02 0.09
Matches are distributed among these distances:
10 1 0.01
11 3 0.02
12 107 0.85
13 4 0.03
14 1 0.01
15 10 0.08
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.33
Consensus pattern (12 bp):
TACATAATAATA
Found at i:92921773 original size:3 final size:3
Alignment explanation
Indices: 92921642--92921762 Score: 224
Period size: 3 Copynumber: 40.3 Consensus size: 3
92921632 ACTAATATAC
92921642 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
92921690 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATG ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92921738 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
92921763 CATCAATAAT
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 114 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:92923800 original size:14 final size:14
Alignment explanation
Indices: 92923781--92923811 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
92923771 TTGATTTTTG
92923781 AAAACATAAATTGA
1 AAAACATAAATTGA
92923795 AAAACATAAATTGA
1 AAAACATAAATTGA
92923809 AAA
1 AAA
92923812 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.19
Consensus pattern (14 bp):
AAAACATAAATTGA
Found at i:92923855 original size:86 final size:87
Alignment explanation
Indices: 92923706--92923884 Score: 247
Period size: 86 Copynumber: 2.0 Consensus size: 87
92923696 AAATTGAAAA
92923706 AAAAACAAAAATTGAAAATACCTCAGTGTGCGGGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGTGTGC--GCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
92923771 TTGATTTTTGA-AAACATAAATTG
64 TTGATTTTTGACAAACAGAAATTG
* * * *
92923794 AAAAACATAAATTGAAAATACCTCAGCATGT-C-CTGAGGCTCAACTCTCCTCTCGCAGTATGAG
1 AAAAACAAAAATTGAAAATACCTCAG--TGTGCGCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
92923857 TTGATTTTTGACAAACAGCAATTG
64 TTGATTTTTGACAAACAGAAATTG
92923881 AAAA
1 AAAA
92923885 TACCTCAGCT
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
86 39 0.48
87 14 0.17
88 25 0.30
89 1 0.01
90 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (87 bp):
AAAAACAAAAATTGAAAATACCTCAGTGTGCGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGACAAACAGAAATTG
Found at i:92923945 original size:72 final size:73
Alignment explanation
Indices: 92923794--92923947 Score: 202
Period size: 72 Copynumber: 2.1 Consensus size: 73
92923784 ACATAAATTG
* * * * *
92923794 AAAAACATAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCTCCTCTCGCAGTATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCGCCTCCCGCAATATGAGTT
***
92923859 GATTTTTG
66 GATTTAAA
* * *
92923867 ACAAACAGCAATTGAAAATACCTCAGCTTG-CCCGAGGCTCAACTCGCCTCCCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCGCCTCCCGCAATATGAGTT
92923931 GATTTAAA
66 GATTTAAA
92923939 AAAAACAGA
1 AAAAACAGA
92923948 CATAAAAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
72 42 0.62
73 26 0.38
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (73 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCGCCTCCCGCAATATGAGTT
GATTTAAA
Found at i:92924146 original size:90 final size:88
Alignment explanation
Indices: 92923864--92924202 Score: 359
Period size: 90 Copynumber: 3.8 Consensus size: 88
92923854 GAGTTGATTT
* * * * * *
92923864 TTGACAAACAGCAATTGAAAATACCTCAGCTTGCCCGAGGCTCAACTCGCCTCCCGCAATATGAG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*** * *
92923929 TTGA--TTTAAAAAAAACAGACA
66 TTGATTTTTTTGAAAGACAGAAA
* * * * *
92923950 -T-AAAAATAGAAATTGAAAGTGACTCAACACGCGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAT-AC-C-TCA-GCGTGCCTGAGGCTCAACTCACCTCTCGCAATA
92924012 TGAGTTGATTTTTTTGAAAG-C-GTAAA
62 TGAGTTGATTTTTTTGAAAGACAG-AAA
**
92924038 TTGAAAAACATCAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGA
*
92924103 GTTGATTTTTTTTGAAGGACAGAAA
65 GTTGA-TTTTTTTGAAAGACAGAAA
* * *
92924128 TTGAAAAACAGAAATTGAAAACACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGA
92924193 GTTGATTTTT
65 GTTGATTTTT
92924203 GAAACATATA
Statistics
Matches: 211, Mismatches: 28, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
84 15 0.07
85 3 0.01
86 5 0.02
87 37 0.18
88 41 0.19
89 25 0.12
90 84 0.40
91 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAGACAGAAA
Found at i:92924150 original size:13 final size:14
Alignment explanation
Indices: 92924121--92924148 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
92924111 TTTTTGAAGG
92924121 ACAGAAATTGAAAA
1 ACAGAAATTGAAAA
92924135 ACAGAAATTGAAAA
1 ACAGAAATTGAAAA
92924149 CACCTTAGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
ACAGAAATTGAAAA
Found at i:92924329 original size:74 final size:73
Alignment explanation
Indices: 92924140--92924370 Score: 288
Period size: 74 Copynumber: 3.1 Consensus size: 73
92924130 GAAAAACAGA
* * * *
92924140 AATTGAAAACACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-
*
92924205 AACATATA-AAA
65 -ACA-A-ACAAT
*
92924216 AATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
92924281 ACAAACAAT
65 ACAAACAAT
* * * * *
92924290 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAATTCACCTATAGCAATATGAATTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
92924355 -AAAC-AT
66 CAAACAAT
92924361 AAATTGAAAA
1 -AATTGAAAA
92924371 ACAGAAATCG
Statistics
Matches: 140, Mismatches: 12, Indels: 10
0.86 0.07 0.06
Matches are distributed among these distances:
71 2 0.01
72 13 0.09
73 8 0.06
74 55 0.39
75 3 0.02
76 53 0.38
77 6 0.04
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (73 bp):
AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
CAAACAAT
Found at i:92936638 original size:22 final size:23
Alignment explanation
Indices: 92936613--92936677 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
92936603 TATTGAAAAT
*
92936613 ACATGTTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
92936635 ACATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
*
92936659 ACATTTTACATAATATATA
1 ACATATT-CATAATATATA
92936678 CACATATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
22 12 0.33
23 5 0.14
24 12 0.33
25 7 0.19
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:92936671 original size:25 final size:23
Alignment explanation
Indices: 92936620--92936675 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 23
92936610 AATACATGTT
92936620 CATAATAT-ATATAAAACATATA
1 CATAATATAATATAAAACATATA
* *
92936642 TATAATATAATATTAAAACATTTTA
1 CATAATATAATA-TAAAACA-TATA
92936667 CATAATATA
1 CATAATATA
92936676 TACACATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.25
23 3 0.11
24 7 0.25
25 11 0.39
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (23 bp):
CATAATATAATATAAAACATATA
Found at i:92937119 original size:8 final size:8
Alignment explanation
Indices: 92937106--92937143 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
92937096 CTATACGTAA
*
92937106 ATATATAT
1 ATATATAC
92937114 ATATATAC
1 ATATATAC
92937122 ATATATAC
1 ATATATAC
*
92937130 ATA-AAAC
1 ATATATAC
92937137 ATATATA
1 ATATATA
92937144 AACATTGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (8 bp):
ATATATAC
Found at i:92937160 original size:3 final size:3
Alignment explanation
Indices: 92937152--92937182 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
92937142 TAAACATTGG
92937152 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
92937183 GTTGAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:92937295 original size:3 final size:3
Alignment explanation
Indices: 92937283--92937358 Score: 145
Period size: 3 Copynumber: 25.7 Consensus size: 3
92937273 AAGTACATAC
92937283 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92937330 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
92937359 TTTTGAAAAT
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 70 0.97
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:92939941 original size:97 final size:94
Alignment explanation
Indices: 92939766--92939943 Score: 241
Period size: 97 Copynumber: 1.9 Consensus size: 94
92939756 ACTTGTGTGA
* * * *
92939766 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTT
1 GCTAGTGTAAGACATGTCGGGGACATGCATCGGCCACAATATGAGAACCAGTGTAAGACCATGTC
*
92939831 TGTGACATGGCATTGGCATTGAGACGAGT
66 TGGGACATGGCATTGGCATTGAGACGAGT
* **
92939860 GCTAGTGTAAGAGATGTCGGGGACATGGCATCGG-CACAAATATGTTAGAACTTGTGTAAGACCA
1 GCTAGTGTAAGACATGTCGGGGACAT-GCATCGGCCAC-AATATG--AGAACCAGTGTAAGACCA
92939924 TGTCTGGGACATGGCATTGG
62 TGTCTGGGACATGGCATTGG
92939944 TACCTGACCC
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
94 27 0.38
95 12 0.17
97 33 0.46
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCGGGGACATGCATCGGCCACAATATGAGAACCAGTGTAAGACCATGTC
TGGGACATGGCATTGGCATTGAGACGAGT
Found at i:92945648 original size:22 final size:23
Alignment explanation
Indices: 92945623--92945665 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
92945613 TGGTGCAAGT
92945623 AAGGGT-GCAAAATGACTTGGTA
1 AAGGGTGGCAAAATGACTTGGTA
* *
92945645 AAGGGTGGTAAAATGGCTTGG
1 AAGGGTGGCAAAATGACTTGG
92945666 CAAATAGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.33, C:0.07, G:0.37, T:0.23
Consensus pattern (23 bp):
AAGGGTGGCAAAATGACTTGGTA
Found at i:92945948 original size:20 final size:20
Alignment explanation
Indices: 92945910--92945948 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92945900 GACCACACGA
*
92945910 CCAACCCACATGGGCGTGTC
1 CCAACCCACATAGGCGTGTC
* *
92945930 CCAAGCCACATAGGTGTGT
1 CCAACCCACATAGGCGTGT
92945949 GACCCTGTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (20 bp):
CCAACCCACATAGGCGTGTC
Found at i:92946000 original size:20 final size:20
Alignment explanation
Indices: 92945966--92946006 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
92945956 TTTTGATGAA
*
92945966 AAAATTTCTCTAAGTGTTTT
1 AAAATTTCTCTAAGTGGTTT
92945986 AAAATTT-TCTAAAGTGGTTT
1 AAAATTTCTCT-AAGTGGTTT
92946006 A
1 A
92946007 GTCCTGAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.46
Consensus pattern (20 bp):
AAAATTTCTCTAAGTGGTTT
Found at i:92949882 original size:34 final size:34
Alignment explanation
Indices: 92949839--92949907 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
92949829 AACAATACTC
*
92949839 ATGCATAAGGAATAACCAAACTTAAACAATGAAA
1 ATGCATAAGGAATAACCAAACTTAAAAAATGAAA
*
92949873 ATGCGTAAGGAATAACCAAACTTAAAAAATGAAA
1 ATGCATAAGGAATAACCAAACTTAAAAAATGAAA
92949907 A
1 A
92949908 CTAATTACTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (34 bp):
ATGCATAAGGAATAACCAAACTTAAAAAATGAAA
Found at i:92951195 original size:19 final size:19
Alignment explanation
Indices: 92951171--92951211 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
92951161 TCATTTAACC
92951171 GAATTAACCAAAATCAACT
1 GAATTAACCAAAATCAACT
* *
92951190 GAATTATCCAAAATTAACT
1 GAATTAACCAAAATCAACT
92951209 GAA
1 GAA
92951212 ATTTTAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.24
Consensus pattern (19 bp):
GAATTAACCAAAATCAACT
Found at i:92952122 original size:20 final size:20
Alignment explanation
Indices: 92952099--92952141 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
92952089 CTTTTGCATA
92952099 ATTTCACAAGCTTTTTCAAC
1 ATTTCACAAGCTTTTTCAAC
92952119 ATTTCACAAGCTTTTTCAAC
1 ATTTCACAAGCTTTTTCAAC
92952139 ATT
1 ATT
92952142 AGACATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (20 bp):
ATTTCACAAGCTTTTTCAAC
Found at i:92963305 original size:25 final size:24
Alignment explanation
Indices: 92963230--92963323 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 24
92963220 TGTATGTATA
*
92963230 TTATGTATGTATAGTAGTATGGATG-
1 TTATGTATGTAT-GTA-TATTGATGT
*
92963255 TTATGTATGCTATGTACATT-ACTGT
1 TTATGTATG-TATGTATATTGA-TGT
*
92963280 TTATGTATGTTATGTATATTGTTGT
1 TTATGTATG-TATGTATATTGATGT
* *
92963305 TTATATTATGTATGGATAT
1 TTAT-GTATGTATGTATAT
92963324 CATGTATGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
23 1 0.02
24 4 0.07
25 45 0.79
26 7 0.12
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (24 bp):
TTATGTATGTATGTATATTGATGT
Found at i:92964345 original size:18 final size:18
Alignment explanation
Indices: 92964310--92964373 Score: 94
Period size: 17 Copynumber: 3.6 Consensus size: 18
92964300 TCATATCTTT
*
92964310 TAAGATTGTACATCATATC
1 TAAGATTGCAC-TCATATC
92964329 TAAGATTGCACTCATATC
1 TAAGATTGCACTCATATC
*
92964347 TAAGATTGTA-TCATATC
1 TAAGATTGCACTCATATC
92964364 TAAGATTGCA
1 TAAGATTGCA
92964374 TATCATTGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 16 0.38
18 16 0.38
19 10 0.24
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (18 bp):
TAAGATTGCACTCATATC
Found at i:92964791 original size:44 final size:45
Alignment explanation
Indices: 92964727--92964953 Score: 198
Period size: 44 Copynumber: 5.1 Consensus size: 45
92964717 GGAAGGCGAT
* *
92964727 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
92964772 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAAATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
92964816 ATCTGTTATCTCCGATTTGCTCCCGGTCTAATACA-AGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * *
92964860 ATCTG-TCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
92964905 ATCTGCTATGTCTTCGATCTACTCCCCATCTAATACAGAGA-GCCAA
1 ATCTGCTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
92964951 ATC
1 ATC
92964954 ATCTTGGATC
Statistics
Matches: 143, Mismatches: 27, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
42 4 0.03
43 6 0.04
44 64 0.45
45 40 0.28
46 7 0.05
47 12 0.08
48 5 0.03
49 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:92965057 original size:78 final size:78
Alignment explanation
Indices: 92964894--92965186 Score: 455
Period size: 78 Copynumber: 3.8 Consensus size: 78
92964884 ATGTAAACAC
*
92964894 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCATCTAATACAGAGA-GCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
92964958 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
92964971 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTCCCCGTCTGATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
92965035 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
92965049 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
92965114 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * **
92965127 ATGAAGGTCTGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAAT
92965187 TTTTTCTTTG
Statistics
Matches: 198, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
77 47 0.24
78 151 0.76
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:92976933 original size:17 final size:18
Alignment explanation
Indices: 92976911--92976946 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
92976901 GATATGATAC
*
92976911 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
92976928 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
92976946 T
1 T
92976947 TGGGAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:92977286 original size:19 final size:19
Alignment explanation
Indices: 92977239--92977305 Score: 113
Period size: 19 Copynumber: 3.7 Consensus size: 19
92977229 TATCTTTTAG
92977239 GATTGCA-ATCATATCTAA
1 GATTGCATATCATATCTAA
92977257 GATTG--TATCATATCTAA
1 GATTGCATATCATATCTAA
92977274 GATTGCATATCATATCTAA
1 GATTGCATATCATATCTAA
92977293 GATTGCATATCAT
1 GATTGCATATCAT
92977306 TGAAGATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.35
18 5 0.11
19 25 0.54
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
GATTGCATATCATATCTAA
Found at i:92977312 original size:36 final size:35
Alignment explanation
Indices: 92977239--92977313 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 35
92977229 TATCTTTTAG
*
92977239 GATTGCAATCATATCTAAGATTGTATCATATCTAA
1 GATTGCAATCATATCTAAGATTGTATCATATCGAA
92977274 GATTGCATATCATATCTAAGATTGCATATCAT-T-GAA
1 GATTGCA-ATCATATCTAAGATTG--TATCATATCGAA
92977310 GATT
1 GATT
92977314 ATATTTCTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
35 7 0.19
36 22 0.61
37 1 0.03
38 6 0.17
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (35 bp):
GATTGCAATCATATCTAAGATTGTATCATATCGAA
Found at i:92977313 original size:17 final size:19
Alignment explanation
Indices: 92977239--92977313 Score: 88
Period size: 19 Copynumber: 4.2 Consensus size: 19
92977229 TATCTTTTAG
*
92977239 GATTGCA-ATCATATCTAA
1 GATTGCATATCATATCGAA
*
92977257 GATTG--TATCATATCTAA
1 GATTGCATATCATATCGAA
*
92977274 GATTGCATATCATATCTAA
1 GATTGCATATCATATCGAA
92977293 GATTGCATATCAT-T-GAA
1 GATTGCATATCATATCGAA
92977310 GATT
1 GATT
92977314 ATATTTCTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
17 22 0.42
18 6 0.11
19 25 0.47
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (19 bp):
GATTGCATATCATATCGAA
Found at i:92977462 original size:21 final size:20
Alignment explanation
Indices: 92977424--92977463 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
92977414 TTGGACTTCG
**
92977424 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
92977444 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
92977464 TCTGGGCCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:92977530 original size:30 final size:30
Alignment explanation
Indices: 92977494--92977561 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
92977484 AGTGTCTGCA
** *
92977494 TATATTATTGTTTATATCATGTATGTTATG
1 TATATTACAGTTTATATCATGTATGCTATG
92977524 TATATTACAGTTTATATCATGTATGCTATG
1 TATATTACAGTTTATATCATGTATGCTATG
92977554 TATATTAC
1 TATATTAC
92977562 TATTTATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.51
Consensus pattern (30 bp):
TATATTACAGTTTATATCATGTATGCTATG
Found at i:92978901 original size:22 final size:22
Alignment explanation
Indices: 92978871--92979105 Score: 137
Period size: 22 Copynumber: 10.8 Consensus size: 22
92978861 CTGTAGTTCA
*
92978871 GTGCCTACTGATTTGCACTTTG
1 GTGCCTACTGATTTGCACTATG
* * * *
92978893 GTGCATACTGCTTTACACTACG
1 GTGCCTACTGATTTGCACTATG
* *
92978915 GTGCCTACTAATTTGCACTCTG
1 GTGCCTACTGATTTGCACTATG
* *
92978937 ATGCCTA-TTATTTTGCACTATG
1 GTGCCTACTGA-TTTGCACTATG
*
92978959 GTGCCTACTG-TTCTACACT-TCG
1 GTGCCTACTGATT-TGCACTAT-G
* * **
92978981 GTGCCTATTGCTTTGCACTACA
1 GTGCCTACTGATTTGCACTATG
* * *
92979003 ATGCCTACTGATTTGTACTTTG
1 GTGCCTACTGATTTGCACTATG
* * *
92979025 GTGCCTATTGCTTTGCA-TAATA
1 GTGCCTACTGATTTGCACT-ATG
*
92979047 GTGCCTACT-TTTTGCACT-TCG
1 GTGCCTACTGATTTGCACTAT-G
* *
92979068 ATGCCTACT-ATTCTAC-CT-TAG
1 GTGCCTACTGATT-TGCACTAT-G
92979089 GTGCCTACTGATTTGCA
1 GTGCCTACTGATTTGCA
92979106 TTTCAGTGAC
Statistics
Matches: 158, Mismatches: 43, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
20 1 0.01
21 36 0.23
22 118 0.75
23 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (22 bp):
GTGCCTACTGATTTGCACTATG
Found at i:92978921 original size:44 final size:44
Alignment explanation
Indices: 92978871--92979161 Score: 209
Period size: 44 Copynumber: 6.7 Consensus size: 44
92978861 CTGTAGTTCA
* * *
92978871 GTGCCTACTGATTTGCACTTTGGTGCATACTGCTTTACACTACG
1 GTGCCTACTGATTTGCACTTTGGTGCCTATTGCTTTGCACTACG
* * * ** *
92978915 GTGCCTACTAATTTGCACTCTGATGCCTATTATTTTGCACTATG
1 GTGCCTACTGATTTGCACTTTGGTGCCTATTGCTTTGCACTACG
* * *
92978959 GTGCCTACTG-TTCTACACTTCGGTGCCTATTGCTTTGCACTACA
1 GTGCCTACTGATT-TGCACTTTGGTGCCTATTGCTTTGCACTACG
* * **
92979003 ATGCCTACTGATTTGTACTTTGGTGCCTATTGCTTTGCA-TAATA
1 GTGCCTACTGATTTGCACTTTGGTGCCTATTGCTTTGCACT-ACG
* * * * * *
92979047 GTGCCTACT-TTTTGCACTTCGATGCCTACT-ATTCTAC-CTTA-G
1 GTGCCTACTGATTTGCACTTTGGTGCCTATTGCTT-TGCAC-TACG
* * * * *
92979089 GTGCCTACTGATTTGCA-TTTCAGTGACTATCGCTTTGGACTATG
1 GTGCCTACTGATTTGCACTTT-GGTGCCTATTGCTTTGCACTACG
* * * *
92979133 GTGCCCATTTATTTGCACTTCGGTGCCTA
1 GTGCCTACTGATTTGCACTTTGGTGCCTA
92979162 CTGGTGTAGT
Statistics
Matches: 187, Mismatches: 48, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
42 13 0.07
43 36 0.19
44 134 0.72
45 4 0.02
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (44 bp):
GTGCCTACTGATTTGCACTTTGGTGCCTATTGCTTTGCACTACG
Found at i:92979007 original size:66 final size:66
Alignment explanation
Indices: 92978872--92979038 Score: 196
Period size: 66 Copynumber: 2.5 Consensus size: 66
92978862 TGTAGTTCAG
* *
92978872 TGCCTACTGATTTGCACTTTGGTGCATACTGCTTTACACTACGGTGCCTACTAATTTGCACTCTG
1 TGCCTACTGATTTGCACTTTGGTGCCTACTGCTTTACACTACGGTGCCTACTAATTTGCACTCTA
92978937 A
66 A
* * * * **
92978938 TGCCTA-TTATTTTGCACTATGGTGCCTACTG-TTCTACACTTCGGTGCCTATTGCTTTGCACTA
1 TGCCTACTGA-TTTGCACTTTGGTGCCTACTGCTT-TACACTACGGTGCCTACTAATTTGCACT-
92979001 C-AA
63 CTAA
* *
92979004 TGCCTACTGATTTGTACTTTGGTGCCTATTGCTTT
1 TGCCTACTGATTTGCACTTTGGTGCCTACTGCTTT
92979039 GCATAATAGT
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
65 4 0.05
66 75 0.89
67 5 0.06
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (66 bp):
TGCCTACTGATTTGCACTTTGGTGCCTACTGCTTTACACTACGGTGCCTACTAATTTGCACTCTA
A
Done.