Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 297 of 438
Found at i:92979124 original size:86 final size:87
Alignment explanation
Indices: 92979004--92979163 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 87
92978994 TGCACTACAA
* * * * *
92979004 TGCCTACTGATTTGTACTTTGGTGCCTATTGCTTTGCA-TAATAGTGCCTACTT-TTTGCACTTC
1 TGCCTACTGATTTGCACTTTAGTGACTATCGCTTTGCACT-ATAGTGCCCACTTATTTGCACTTC
92979067 GATGCCTACTATTCTACCTTAGG
65 GATGCCTACTATTCTACCTTAGG
* * *
92979090 TGCCTACTGATTTGCA-TTTCAGTGACTATCGCTTTGGACTATGGTGCCCATTTATTTGCACTTC
1 TGCCTACTGATTTGCACTTT-AGTGACTATCGCTTTGCACTATAGTGCCCACTTATTTGCACTTC
*
92979154 GGTGCCTACT
65 GATGCCTACT
92979164 GGTGTAGTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
85 3 0.05
86 39 0.63
87 20 0.32
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.41
Consensus pattern (87 bp):
TGCCTACTGATTTGCACTTTAGTGACTATCGCTTTGCACTATAGTGCCCACTTATTTGCACTTCG
ATGCCTACTATTCTACCTTAGG
Found at i:92979148 original size:108 final size:110
Alignment explanation
Indices: 92978938--92979149 Score: 234
Period size: 108 Copynumber: 1.9 Consensus size: 110
92978928 TGCACTCTGA
* * * * * *
92978938 TGCCTATTATTTTGCACTATGGTGCCTACTGTTCTACACTTCGGTGCCTATTGCTTTGCACTACA
1 TGCCTACTATTTTGCACTATGATGCCTACTATTCTACACTTAGGTGCCTACTGATTTGCACTACA
* * * * *
92979003 ATGCCTACTGATTTGTACTTTGGTGCCTATTGCTTTGCATAATAG
66 ATGACTACTGATTTGGACTATGGTGCCCATTGATTTGCATAATAG
* *
92979048 TGCCTACT-TTTTGCACT-TCGATGCCTACTATTCTAC-CTTAGGTGCCTACTGATTTGCATTTC
1 TGCCTACTATTTTGCACTAT-GATGCCTACTATTCTACACTTAGGTGCCTACTGATTTGCACTAC
* * *
92979110 AGTGACTA-TCGCTTTGGACTATGGTGCCCATTTATTTGCA
65 AATGACTACT-GATTTGGACTATGGTGCCCATTGATTTGCA
92979150 CTTCGGTGCC
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
107 1 0.01
108 52 0.62
109 24 0.29
110 7 0.08
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.41
Consensus pattern (110 bp):
TGCCTACTATTTTGCACTATGATGCCTACTATTCTACACTTAGGTGCCTACTGATTTGCACTACA
ATGACTACTGATTTGGACTATGGTGCCCATTGATTTGCATAATAG
Found at i:92982406 original size:39 final size:39
Alignment explanation
Indices: 92982288--92982470 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
92982278 TCGTTCAAAC
* * ** * **
92982288 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
92982328 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
92982368 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
*
92982407 GCCTTCGGGCTTAGCCCGAATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
92982446 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
92982471 CTCGAACATT
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:92987246 original size:71 final size:72
Alignment explanation
Indices: 92987164--92987325 Score: 220
Period size: 71 Copynumber: 2.3 Consensus size: 72
92987154 CATCATGTGT
* * * ** *
92987164 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
92987228 CATGTAG
66 CATGTAG
* * * *
92987235 ACAAGAGAGCTACGTGA-AAGATAAATGTATCTAGGTCGCATGCGTGATTCCAATTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
92987299 CATGTAG
66 CATGTAG
92987306 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
92987326 ATCGGTTGGG
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
70 3 0.04
71 73 0.94
72 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (72 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
CATGTAG
Found at i:92993178 original size:39 final size:39
Alignment explanation
Indices: 92993072--92993242 Score: 225
Period size: 39 Copynumber: 4.4 Consensus size: 39
92993062 CATCGGGACA
* ** * **
92993072 TAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CT
* * * *
92993112 TAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
* *
92993151 TAGCCCGGATATCATAGCTCGCCCAATTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
92993190 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
92993229 TAGCCCGGATATCA
1 TAGCCCGGATATCA
92993243 CTCGAACATT
Statistics
Matches: 113, Mismatches: 18, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
39 86 0.76
40 27 0.24
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
Found at i:92995399 original size:17 final size:17
Alignment explanation
Indices: 92995377--92995411 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
92995367 TGGGTGCACA
92995377 TTTATTTT-ATTTTATTT
1 TTTATTTTGA-TTTATTT
92995394 TTTATTTTGATTTATTT
1 TTTATTTTGATTTATTT
92995411 T
1 T
92995412 ATTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (17 bp):
TTTATTTTGATTTATTT
Found at i:92996050 original size:13 final size:13
Alignment explanation
Indices: 92996028--92996058 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
92996018 TTTTGGGAGT
*
92996028 CACACGGCCTGGC
1 CACACAGCCTGGC
92996041 CACACAGCCTGGC
1 CACACAGCCTGGC
92996054 CACAC
1 CACAC
92996059 GGCTGTGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.48, G:0.23, T:0.06
Consensus pattern (13 bp):
CACACAGCCTGGC
Found at i:92996246 original size:21 final size:21
Alignment explanation
Indices: 92996222--92996267 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
92996212 CGGCCTGTTT
*
92996222 ACACGGCCATACCCCTGCTTC
1 ACACGGCCATACCCCTACTTC
92996243 ACACGGCCATACCCCTACTTC
1 ACACGGCCATACCCCTACTTC
92996264 ACAC
1 ACAC
92996268 AGGCGTGTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.48, G:0.11, T:0.17
Consensus pattern (21 bp):
ACACGGCCATACCCCTACTTC
Found at i:92996569 original size:4 final size:4
Alignment explanation
Indices: 92996560--92996602 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
92996550 TTCTGACTGT
92996560 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
92996603 TGCATAAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:92996938 original size:92 final size:92
Alignment explanation
Indices: 92996777--92997021 Score: 346
Period size: 92 Copynumber: 2.7 Consensus size: 92
92996767 GATGACATCA
* ** * * * *
92996777 TATCGGTATAGTGGATTGTCGTATTGCACTGTACCGCATGTATGTCAGCTACACTATGTACCTTT
1 TATCGGTATAGCGGATTACCGCATTGCACTGTACCGCATGTATGTTAGCTACACTACGTACATTT
*
92996842 GACTGAACTGGCAGTTTTACTGCAACC
66 GACTGAACTGGCAGTTTTACTACAACC
* * *
92996869 TATTGGTATAGCGGATTACCGCATTGCACTGTACCGCATGTACGTTAGCTACACTGCGTACATTT
1 TATCGGTATAGCGGATTACCGCATTGCACTGTACCGCATGTATGTTAGCTACACTACGTACATTT
92996934 GACTGAACTGGCAGTTTTACTACAACC
66 GACTGAACTGGCAGTTTTACTACAACC
* * * * *
92996961 TATCGGTATAGCGGATTACCACATTACACCGTACCACATGTATGTTAGCTACTCTACGTAC
1 TATCGGTATAGCGGATTACCGCATTGCACTGTACCGCATGTATGTTAGCTACACTACGTAC
92997022 TACTATCTGA
Statistics
Matches: 134, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 134 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (92 bp):
TATCGGTATAGCGGATTACCGCATTGCACTGTACCGCATGTATGTTAGCTACACTACGTACATTT
GACTGAACTGGCAGTTTTACTACAACC
Found at i:93005991 original size:31 final size:31
Alignment explanation
Indices: 93005944--93006089 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
93005934 TCAATCGCAG
* *
93005944 CATAT-ACTGGGCCGAAGCCTTTACATTATC
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
* *
93005974 CATGTCACTGGGTCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
93006005 CATATCACTGGGCTGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
93006036 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
93006067 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
93006090 ACTGGAAATG
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 4 0.04
31 103 0.96
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:93006339 original size:25 final size:26
Alignment explanation
Indices: 93006311--93006380 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 26
93006301 CTCTTTTAAT
*
93006311 AACTGGGGCAAAGCCCTTTTTGA-TA
1 AACTGGGGCAAAGCCCTTTTTCAGTA
93006336 AACTGGGGCAAAGCCC-TTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTTCAGTA
*
93006361 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
93006381 GAACTTCCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 5 0.12
25 33 0.80
26 3 0.07
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTCAGTA
Found at i:93006539 original size:25 final size:25
Alignment explanation
Indices: 93006511--93006558 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
93006501 ATAATTAAAC
* **
93006511 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
93006536 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
93006559 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:93008530 original size:3 final size:3
Alignment explanation
Indices: 93008522--93008552 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
93008512 ATTTAGTTAC
93008522 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
93008553 TTCATAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:93009815 original size:796 final size:794
Alignment explanation
Indices: 93008262--93009852 Score: 3040
Period size: 796 Copynumber: 2.0 Consensus size: 794
93008252 CTTAACCCTT
* *
93008262 ATTCTAGCCGCGATCTGCATATTAAAAAAAACACCTAAACTATGCACGCCGCGCCTTGAACCCAG
1 ATTCTAGCCGCGATCTGCATATTAAAAAAAACACCTAAACTACGCACGCCGCACCTTGAACCCAG
*
93008327 GCACCTCCCATGCCCTCCTAGCGTACTTAGCCACTGGGCCAGATGCCTGCTTGTGCTAAAACTCA
66 GCACCTCCCATGCCCTCCTAGCGTACTTAGCCACTGGGCCAGATGCCTGCTTGTGCTAAAACGCA
93008392 GCCCTAATTTATTAATGAAGCCTACTGCCCAGATTCCCTTAAGAGGCAAGATTCAAGAATTTTGC
131 GCCCTAATTTATTAATGAAGCCTACTGCCCAGATTCCCTTAAGAGGCAAGATTCAAGAATTTTGC
93008457 TAAAGCTATGGGCCGAGCCCCAGACCTTTCCCCACATTATACCCCTTCGTTACATATTTAGTTAC
196 TAAAGCTATGGGCCGAGCCCCAGACCTTTCCCCACATTATACCCCTTCGTTACATATTTAGTTAC
93008522 TAATAATAATAATAATAATAATAATAATAATTTCATAAACATATCTAATAATAAAAATTTCAAAT
261 TAATAATAATAATAATAATAATAATAATAATTTCATAAACATATCTAATAATAAAAATTTCAAAT
93008587 ACCAATAATACAGCAAATAATAATAATTTTCATAAAAATTTTCAAACATACATACAGTAATATTT
326 ACCAATAATACAGCAAATAATAATAATTTTCATAAAAATTTTCAAACATACATACAGTAATATTT
93008652 TTGTAATAATAATTTTATCTCATAATACTAATTAAAATTTCATAAAAATTTAAAATATCCGTAAT
391 TTGTAATAATAATTTTATCTCATAATACTAATTAAAATTTCATAAAAATTTAAAATATCCGTAAT
*
93008717 AATAAATATAGTAAAAATTTTCTAGTAGTAATTCAAAATTTTTTTCTTAAACGGTAATATTTAAA
456 AATAAATATAGTAAAAATTTTCTAGTAGTAATTCAAAAATTTTTTCTTAAACGGTAATATTTAAA
*
93008782 ACTTCTTAATTATTCAGGTTTCCTTCTATCCGAATCCCAGACTCAAAGCCCAACTTTTCTAGTCC
521 ACTTCTTAATTATTCAGGTTTCCTTCTATCCGAATCCCAGACTCAAAGCCCAACTTTTCTAGGCC
*
93008847 CCAAAAATCAGAGCGTTACACCAAGGAGCGGGATCGAGCAACAACTACATGCATTAAAGATCAAA
586 CCAAAAATCAGAGCGTTACACCAAGGAGCGAGATCGAGCAACAACTACATGCATTAAAGATCAAA
93008912 TCAACCTCTACGGTTCAATCAACAAGTTTAACAGCCTTAATCCAAAGCCAAGCAACAACACTAAA
651 TCAACCTCTACGGTTCAATCAACAAGTTTAACAGCCTTAATCCAAAGCCAAGCAACAACACTAAA
93008977 AATTTTGGAGAACCAAATGGTTCAATTAGCTACAAAGCTTCATAATAGACCCCAAGGAGCCTTGC
716 AATTTTGGAGAACCAAATGGTTCAATTAGCTACAAAGCTTCATAATAGACCCCAAGGAGCCTTGC
93009042 TAAGTGACATGGAA
781 TAAGTGACATGGAA
93009056 ATTCTAGCCGCGATCTGCATATT-AAAAAAACACCTAAACTACGCACGCCGCACCTTGAACCCAG
1 ATTCTAGCCGCGATCTGCATATTAAAAAAAACACCTAAACTACGCACGCCGCACCTTGAACCCAG
93009120 GCACCTCCCATGCCCTCCTAGCGTACTTAGCCACTGGGCCAGATGCCTGCTTGTGCTAAAACGCA
66 GCACCTCCCATGCCCTCCTAGCGTACTTAGCCACTGGGCCAGATGCCTGCTTGTGCTAAAACGCA
93009185 GCCCTAATTTATTAATGAAGCCTACTGCCCAGATTCCCTTAAGAGGCAAGATTCAAGAATTTTGC
131 GCCCTAATTTATTAATGAAGCCTACTGCCCAGATTCCCTTAAGAGGCAAGATTCAAGAATTTTGC
**
93009250 TAAAGCTATGGGCCGAGCCCTGGACCTTTCCCCACATTATACCCCTTCGTTACATATTTAGTTAC
196 TAAAGCTATGGGCCGAGCCCCAGACCTTTCCCCACATTATACCCCTTCGTTACATATTTAGTTAC
* *
93009315 TACTACTACTACTAATAATAATAATAATAATAATTTCATAAACATATCTAATAATAAAAATTTCA
261 TA--A-TAATAATAATAATAATAATAATAATAATTTCATAAACATATCTAATAATAAAAATTTCA
93009380 AATACCAATAATACAGCAAATAATAATAATTTTCATAAAAATTTTCAAACATACATACAGTAATA
323 AATACCAATAATACAGCAAATAATAATAATTTTCATAAAAATTTTCAAACATACATACAGTAATA
93009445 TTTTTGTAATAATAATTTTATCTCATAATACTAATTAAAATTTCATAAAAATTTAAAATATCCGT
388 TTTTTGTAATAATAATTTTATCTCATAATACTAATTAAAATTTCATAAAAATTTAAAATATCCGT
93009510 AATAATAAATATAGTAAAAATTTTCTAGTAGTAATTCAAAAATTTTTTCTTAAACGGTAATATTT
453 AATAATAAATATAGTAAAAATTTTCTAGTAGTAATTCAAAAATTTTTTCTTAAACGGTAATATTT
*
93009575 AAAACTTCTTAATTATTCAGGTTTCCTTCTATTCGAATCCCAGACTCAAAGCCCAACTTTTCTAG
518 AAAACTTCTTAATTATTCAGGTTTCCTTCTATCCGAATCCCAGACTCAAAGCCCAACTTTTCTAG
93009640 GCCCCAAAAATCAGAGCGTTACACCAAGGAGCGAGATCGAGCAACAACTACATGCATTAAAGATC
583 GCCCCAAAAATCAGAGCGTTACACCAAGGAGCGAGATCGAGCAACAACTACATGCATTAAAGATC
93009705 AAATCAACCTCTACGGTTCAATCAACAAGTTTAACAGCCTTAATCCAAAGCCAAGCAACAACACT
648 AAATCAACCTCTACGGTTCAATCAACAAGTTTAACAGCCTTAATCCAAAGCCAAGCAACAACACT
93009770 AAAAATTTTGGAGAACCAAATGGTTCAATTAGCTACAAAGCTTCATAATAGACCCCAAGGAGCCT
713 AAAAATTTTGGAGAACCAAATGGTTCAATTAGCTACAAAGCTTCATAATAGACCCCAAGGAGCCT
*
93009835 TGTTAAGTGACATGGAA
778 TGCTAAGTGACATGGAA
93009852 A
1 A
93009853 ATTCAAGGAG
Statistics
Matches: 782, Mismatches: 12, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
793 233 0.30
794 23 0.03
795 1 0.00
796 525 0.67
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.29
Consensus pattern (794 bp):
ATTCTAGCCGCGATCTGCATATTAAAAAAAACACCTAAACTACGCACGCCGCACCTTGAACCCAG
GCACCTCCCATGCCCTCCTAGCGTACTTAGCCACTGGGCCAGATGCCTGCTTGTGCTAAAACGCA
GCCCTAATTTATTAATGAAGCCTACTGCCCAGATTCCCTTAAGAGGCAAGATTCAAGAATTTTGC
TAAAGCTATGGGCCGAGCCCCAGACCTTTCCCCACATTATACCCCTTCGTTACATATTTAGTTAC
TAATAATAATAATAATAATAATAATAATAATTTCATAAACATATCTAATAATAAAAATTTCAAAT
ACCAATAATACAGCAAATAATAATAATTTTCATAAAAATTTTCAAACATACATACAGTAATATTT
TTGTAATAATAATTTTATCTCATAATACTAATTAAAATTTCATAAAAATTTAAAATATCCGTAAT
AATAAATATAGTAAAAATTTTCTAGTAGTAATTCAAAAATTTTTTCTTAAACGGTAATATTTAAA
ACTTCTTAATTATTCAGGTTTCCTTCTATCCGAATCCCAGACTCAAAGCCCAACTTTTCTAGGCC
CCAAAAATCAGAGCGTTACACCAAGGAGCGAGATCGAGCAACAACTACATGCATTAAAGATCAAA
TCAACCTCTACGGTTCAATCAACAAGTTTAACAGCCTTAATCCAAAGCCAAGCAACAACACTAAA
AATTTTGGAGAACCAAATGGTTCAATTAGCTACAAAGCTTCATAATAGACCCCAAGGAGCCTTGC
TAAGTGACATGGAA
Found at i:93012200 original size:43 final size:43
Alignment explanation
Indices: 93012102--93012201 Score: 100
Period size: 43 Copynumber: 2.3 Consensus size: 43
93012092 TCGAATAATC
*
93012102 ACACATATCATACAATGCCAACGTCCCAGACGTGGTCTTACATGT
1 ACACATAT-AT-CGATGCCAACGTCCCAGACGTGGTCTTACATGT
*
93012147 A-ATCACATATCGATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGT
1 ACA-CATATATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GT
93012190 ACACATATATCG
1 ACACATATATCG
93012202 GAATCACATA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
42 3 0.06
43 34 0.72
44 5 0.11
45 5 0.11
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (43 bp):
ACACATATATCGATGCCAACGTCCCAGACGTGGTCTTACATGT
Found at i:93015741 original size:79 final size:81
Alignment explanation
Indices: 93015640--93015824 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
93015630 ACGACTCGCT
** * *
93015640 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
93015703 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
93015720 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
93015784 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
93015800 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93015825 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:93015824 original size:40 final size:39
Alignment explanation
Indices: 93015633--93015824 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
93015623 GGATATAACG
* ** * *
93015633 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
93015673 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
93015713 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
93015752 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
93015792 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
93015825 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:93022975 original size:24 final size:24
Alignment explanation
Indices: 93022948--93023176 Score: 372
Period size: 24 Copynumber: 9.6 Consensus size: 24
93022938 CTTATTATGT
* * *
93022948 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
93022972 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
93022996 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
93023020 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
93023044 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
93023068 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
93023092 TCGCACACATAGTGCCATAGT-AA
1 TCGCACACATAGTGCCATAGTAAA
93023115 TCGCACACATAGTGCCATAGT-AA
1 TCGCACACATAGTGCCATAGTAAA
*
93023138 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
93023162 TCGCACACATAGTGC
1 TCGCACACATAGTGC
93023177 ATTTGAGATA
Statistics
Matches: 200, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
23 46 0.23
24 154 0.77
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:93030745 original size:24 final size:24
Alignment explanation
Indices: 93030718--93030948 Score: 372
Period size: 24 Copynumber: 9.6 Consensus size: 24
93030708 CTTATTATGT
* * *
93030718 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
93030742 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
93030766 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
93030790 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
93030814 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
93030838 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
93030862 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
93030886 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
93030910 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
93030934 TCGCACACATAGTGC
1 TCGCACACATAGTGC
93030949 ATTTGAGATA
Statistics
Matches: 203, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 203 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:93033479 original size:29 final size:29
Alignment explanation
Indices: 93033447--93033519 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
93033437 CTTCGAGCTC
*
93033447 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
93033476 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
93033505 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
93033520 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:93041528 original size:28 final size:28
Alignment explanation
Indices: 93041459--93041559 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
93041449 GACAAGATTG
* * * *
93041459 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
93041489 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
93041517 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
93041546 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
93041560 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:93045669 original size:28 final size:28
Alignment explanation
Indices: 93045637--93045694 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
93045627 TTGGATAAGT
93045637 TACCTTAATTTGGCTATAGGCCATGGTA
1 TACCTTAATTTGGCTATAGGCCATGGTA
*
93045665 TACCTTGATTTGGCTATAGGCCATGGTA
1 TACCTTAATTTGGCTATAGGCCATGGTA
93045693 TA
1 TA
93045695 AGTACTTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.36
Consensus pattern (28 bp):
TACCTTAATTTGGCTATAGGCCATGGTA
Found at i:93047257 original size:40 final size:40
Alignment explanation
Indices: 93047213--93047456 Score: 350
Period size: 40 Copynumber: 6.1 Consensus size: 40
93047203 CAGGCTTTAA
** *
93047213 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
93047253 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTGAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
93047293 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
93047333 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
93047373 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
93047413 CCGGA-ATTAGTCACTAGAACAAATGCCTTCAGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
93047453 CCGG
1 CCGG
93047457 TTATCATCCG
Statistics
Matches: 188, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 185 0.98
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:93049128 original size:28 final size:29
Alignment explanation
Indices: 93049096--93049194 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
93049086 ATAATAAGCC
*
93049096 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
93049124 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
93049152 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
93049181 CGCACACTTAGTGC
1 CGCACACTTAGTGC
93049195 CAATTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:93062253 original size:93 final size:93
Alignment explanation
Indices: 93062141--93062312 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
93062131 GCCCATAAGT
*
93062141 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93062206 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
93062234 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
93062299 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
93062313 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:93062308 original size:46 final size:46
Alignment explanation
Indices: 93062133--93062308 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
93062123 TGTAACCCGC
*
93062133 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93062179 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
93062225 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93062272 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
93062309 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 70 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:93064726 original size:15 final size:15
Alignment explanation
Indices: 93064697--93064746 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
93064687 CAAAGATAAC
*
93064697 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
93064711 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
93064726 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
93064741 AAGAAA
1 AAGAAA
93064747 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:93064755 original size:15 final size:15
Alignment explanation
Indices: 93064708--93064755 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
93064698 AGAAAACCGA
93064708 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
93064722 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
93064738 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
93064753 ATA
1 ATA
93064756 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:93066374 original size:40 final size:40
Alignment explanation
Indices: 93066284--93066465 Score: 238
Period size: 40 Copynumber: 4.5 Consensus size: 40
93066274 GTGTCTGGGC
* * * * *
93066284 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGT
* *
93066325 CAACTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
93066365 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
* * * *
93066405 TAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
* *
93066445 TAATTCCCGAAGGCAATTGTG
1 TAAGTCCCGAAGGCATTTGTG
93066466 TGAATCACTA
Statistics
Matches: 125, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 106 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
Found at i:93066427 original size:80 final size:80
Alignment explanation
Indices: 93066280--93066510 Score: 255
Period size: 80 Copynumber: 2.9 Consensus size: 80
93066270 AATGGTGTCT
* * * * * * *
93066280 GGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAACCGGGTTAAGTCCCGAAGGCATTCGT
93066345 GCGAGTTACCAAAACC
65 GCGAGTTACCAAAACC
* * *
93066361 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCGGGTTAAGTCCCGAAGGCATTCGTG
* *
93066426 CGAGTTACTAAATCC
66 CGAGTTACCAAAACC
* * * * * * * * * *
93066441 GGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCGGGTTAAGTCCCGAAGGCATTCGTG
93066506 CGAGT
66 CGAGT
93066511 CGCTATATCC
Statistics
Matches: 126, Mismatches: 24, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 102 0.81
81 24 0.19
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCGGGTTAAGTCCCGAAGGCATTCGTG
CGAGTTACCAAAACC
Found at i:93066483 original size:40 final size:40
Alignment explanation
Indices: 93066280--93066510 Score: 214
Period size: 40 Copynumber: 5.8 Consensus size: 40
93066270 AATGGTGTCT
** * * * *
93066280 GGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCC
1 GGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACCAAAACC
* *
93066321 GGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAACC
1 GGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTACCAAAACC
* *
93066361 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACC
1 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAACC
* * *
93066401 GGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACCAAAACC
* * * * * *
93066441 GGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACC
1 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAACC
* * * *
93066481 GGGCTATGTCCCGAAGACAATCGAGCGAGT
1 GGGCTAAGTCCCGAAGGCAATTGTGCGAGT
93066511 CGCTATATCC
Statistics
Matches: 162, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.01
40 134 0.83
41 26 0.16
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAACC
Found at i:93081105 original size:10 final size:11
Alignment explanation
Indices: 93081090--93081134 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
93081080 ATTTTGATAT
*
93081090 ACATGATTTG-
1 ACATGATATGC
93081100 ACATGATATGC
1 ACATGATATGC
93081111 ACATGATATG-
1 ACATGATATGC
*
93081121 -TATGATATGC
1 ACATGATATGC
93081131 ACAT
1 ACAT
93081135 CATGTATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
9 8 0.28
10 9 0.31
11 12 0.41
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:93081116 original size:11 final size:10
Alignment explanation
Indices: 93081084--93081134 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 10
93081074 CATGAGATTT
93081084 TGATAT-ACA
1 TGATATGACA
*
93081093 TGATTTGACA
1 TGATATGACA
93081103 TGATATGCACA
1 TGATATG-ACA
*
93081114 TGATATG-TA
1 TGATATGACA
93081123 TGATATGCACA
1 TGATATG-ACA
93081134 T
1 T
93081135 CATGTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 13 0.38
10 9 0.26
11 12 0.35
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:93081236 original size:25 final size:26
Alignment explanation
Indices: 93081184--93081279 Score: 110
Period size: 26 Copynumber: 3.8 Consensus size: 26
93081174 GAGGAAGTGC
* * *
93081184 AAAAGGGC-TATGCCCTAG-TTACAG
1 AAAAGGGCTTTTGCCCCAGTTTACTG
93081208 AAAAGGGC-TTTGCCCCAGTTTACTG
1 AAAAGGGCTTTTGCCCCAGTTTACTG
* *
93081233 AAAAGGGCTTTTGCCCCAATTTA-TCA
1 AAAAGGGCTTTTGCCCCAGTTTACT-G
93081259 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
93081280 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
24 16 0.25
25 14 0.22
26 33 0.52
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACTG
Found at i:93081537 original size:31 final size:31
Alignment explanation
Indices: 93081499--93081582 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
93081489 TTGTTATAGT
93081499 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
93081530 AAAGGCTTCGGCCCAATGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
93081561 AAAGGCTTTGGCCCGGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
93081583 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:93084402 original size:40 final size:39
Alignment explanation
Indices: 93084324--93084574 Score: 283
Period size: 40 Copynumber: 6.4 Consensus size: 39
93084314 CCTTCAGGGT
* * *
93084324 TTAG-CCGAATATAGCTACT-GCTCAAATGCCTTCAGGAC
1 TTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGAC
* *
93084362 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGAC
* *
93084402 TTATCCCGGATATAGTACTTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAC-TAGCACAAATGCCTTCGGGAC
* * * *
93084442 TTAGCCCGGATATAACTACTTGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATAT-AGTACTAGCACAAATGCCTTCGGGAC
* *
93084481 TTAGCCCGGATATGGTCACTAGCACAGATGCCTTCGGGAC
1 TTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGAC
* * *
93084521 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCAGGTC
1 TTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGAC
93084561 TTAGCCCGGATATA
1 TTAGCCCGGATATA
93084575 ATCGAATAAC
Statistics
Matches: 184, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 6 0.03
39 45 0.24
40 129 0.70
41 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGAC
Found at i:93084514 original size:79 final size:80
Alignment explanation
Indices: 93084314--93084574 Score: 293
Period size: 79 Copynumber: 3.3 Consensus size: 80
93084304 CAACCAAGTA
* * * *
93084314 CCTTCAGGGT-TTAG-CCGAATATAGCTAC-T-GCTCAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CCTTC-GGGTCTTAGCCCGGATATAG-TACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
93084375 AGTAACTCGCACAAATG
64 AGTAACTAGCACAAATG
* * *
93084392 CCTTCGGGACTTATCCCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGTCTTAGCCCGGATATAGTACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT-A
* * *
93084457 CT-ACTTGCAC-AAGG
65 GTAACTAGCACAAATG
* *
93084471 CCTTCGGGTCTTAGCCCGGATATGGTCAC-TAGCACAGATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGTCTTAGCCCGGATATAGT-ACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
**
93084535 GTCGCTAGCACAAATG
65 GTAACTAGCACAAATG
*
93084551 CCTTCAGGTCTTAGCCCGGATATA
1 CCTTCGGGTCTTAGCCCGGATATA
93084575 ATCGAATAAC
Statistics
Matches: 155, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
77 3 0.02
78 13 0.08
79 74 0.48
80 63 0.41
81 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGTCTTAGCCCGGATATAGTACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:93084546 original size:119 final size:119
Alignment explanation
Indices: 93084351--93084575 Score: 326
Period size: 119 Copynumber: 1.9 Consensus size: 119
93084341 CTGCTCAAAT
* * *
93084351 GCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATATA
1 GCCTTCAGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* * *
93084416 GTACTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAACTACTTGCACAAG
66 GTACCTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAACTACTTGCACAAG
* * * * *
93084470 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCAGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
93084535 GT-CGCTAGCACAAATGCCTTCAGGTCTTAGCCCGGATATAA
66 GTAC-CTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAA
93084576 TCGAATAACC
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
118 1 0.01
119 92 0.99
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (119 bp):
GCCTTCAGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTACCTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAACTACTTGCACAAG
Found at i:93086832 original size:20 final size:21
Alignment explanation
Indices: 93086807--93086847 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
93086797 CTAAACCGAT
93086807 AACTTATG-AAATTTTA-AAAA
1 AACTTA-GAAAATTTTACAAAA
93086827 AACTTAGAAAATTTTACAAAA
1 AACTTAGAAAATTTTACAAAA
93086848 TACAGGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.05
20 14 0.74
21 4 0.21
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32
Consensus pattern (21 bp):
AACTTAGAAAATTTTACAAAA
Found at i:93092145 original size:41 final size:40
Alignment explanation
Indices: 93092088--93092268 Score: 175
Period size: 41 Copynumber: 4.4 Consensus size: 40
93092078 ACCGTTGCTC
** **
93092088 ACATAAAATTTGCTAGGCATAAAGCCTGGTATAATACACCG
1 ACATAAAACCTGCTAGGCA-AAAGCCTGAAATAATACACCG
* * * *
93092129 ACATAGAGCCTGCTAGGCAATAGCCCTGAAATAATACACTG
1 ACATAAAACCTGCTAGGCAAAAG-CCTGAAATAATACACCG
*
93092170 GCATAAAACCTGCTAGGCAATAAGCCTGAAATAATACACC-
1 ACATAAAACCTGCTAGGCAA-AAGCCTGAAATAATACACCG
* * * * *
93092210 AGCATAAAGCTTGCTAGGCAATAAGCCTGATATAATTCATCG
1 A-CATAAAACCTGCTAGGCAA-AAGCCTGAAATAATACACCG
*
93092252 GCATAAAACCTGCTAGG
1 ACATAAAACCTGCTAGG
93092269 TATAAAGCAG
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
40 3 0.03
41 109 0.96
42 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (40 bp):
ACATAAAACCTGCTAGGCAAAAGCCTGAAATAATACACCG
Found at i:93092226 original size:82 final size:82
Alignment explanation
Indices: 93092089--93092276 Score: 231
Period size: 82 Copynumber: 2.3 Consensus size: 82
93092079 CCGTTGCTCA
** ** *
93092089 CATAAAATTTGCTAGGCATAAAGCCTGGTATAATACACCGACATAGAGCCTGCTAGGCAAT-AGC
1 CATAAAACCTGCTAGGCATAAAGCCTGAAATAATACACCGACATAAAGCCTGCTAGGCAATAAG-
93092153 CCTGAAATAATACA-CTGG
65 CCTGAAATAATACATC-GG
*
93092171 CATAAAACCTGCTAGGCA-ATAAGCCTGAAATAATACACC-AGCATAAAGCTTGCTAGGCAATAA
1 CATAAAACCTGCTAGGCATA-AAGCCTGAAATAATACACCGA-CATAAAGCCTGCTAGGCAATAA
* *
93092234 GCCTGATATAATTCATCGG
64 GCCTGAAATAATACATCGG
*
93092253 CATAAAACCTGCTAGGTATAAAGC
1 CATAAAACCTGCTAGGCATAAAGC
93092277 AGAATATCAT
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
81 2 0.02
82 86 0.93
83 4 0.04
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (82 bp):
CATAAAACCTGCTAGGCATAAAGCCTGAAATAATACACCGACATAAAGCCTGCTAGGCAATAAGC
CTGAAATAATACATCGG
Found at i:93093955 original size:27 final size:27
Alignment explanation
Indices: 93093917--93093970 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
93093907 TCTATTCAAG
93093917 ATTACTTATTATATTAGGGATCGATGC
1 ATTACTTATTATATTAGGGATCGATGC
93093944 ATTACTTATTATATTAGGGATCGATGC
1 ATTACTTATTATATTAGGGATCGATGC
93093971 CCCTGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTACTTATTATATTAGGGATCGATGC
Found at i:93108363 original size:12 final size:13
Alignment explanation
Indices: 93108339--93108367 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
93108329 CCGAACTACG
93108339 TTTTCTTTCCTTT
1 TTTTCTTTCCTTT
93108352 TTTTCTTT-CTTT
1 TTTTCTTTCCTTT
93108364 TTTT
1 TTTT
93108368 GGTTTCGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTCTTTCCTTT
Found at i:93118424 original size:23 final size:23
Alignment explanation
Indices: 93118398--93118447 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
93118388 TGATAAGTGA
93118398 TATAGGTGATGCATATAATGCTT
1 TATAGGTGATGCATATAATGCTT
93118421 TATAGGTGATGCATATAATGCTT
1 TATAGGTGATGCATATAATGCTT
93118444 TATA
1 TATA
93118448 TGTTGACTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (23 bp):
TATAGGTGATGCATATAATGCTT
Found at i:93120100 original size:20 final size:20
Alignment explanation
Indices: 93120072--93120115 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
93120062 ACCAAACTTG
*
93120072 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
93120092 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
93120112 CAAC
1 CAAC
93120116 TTAAACTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:93120320 original size:42 final size:43
Alignment explanation
Indices: 93120232--93120322 Score: 139
Period size: 42 Copynumber: 2.1 Consensus size: 43
93120222 TTTACATGGG
*
93120232 ATCTCATATCGATGCCAATAGCCCAGCTATGGTCTTACACGAA
1 ATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACGAA
* * *
93120275 ATCTCATATCGATGCC-ATATCCCAGATATGGTCTTATACGTA
1 ATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACGAA
93120317 ATCTCA
1 ATCTCA
93120323 ACTAACCCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 28 0.64
43 16 0.36
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (43 bp):
ATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACGAA
Found at i:93124713 original size:28 final size:27
Alignment explanation
Indices: 93124650--93124719 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
93124640 ATAGTGAGTC
93124650 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
93124677 CGCACACTTAGTGCTCTATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
93124705 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93124720 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:93126701 original size:70 final size:71
Alignment explanation
Indices: 93126551--93126713 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
93126541 GAGATGTATC
93126551 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93126616 AGGACA
66 AGGACA
93126622 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93126686 AGGACA
66 AGGACA
93126692 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93126714 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93134234 original size:70 final size:71
Alignment explanation
Indices: 93134084--93134246 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
93134074 GAGATGTATC
93134084 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93134149 AGGACA
66 AGGACA
93134155 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93134219 AGGACA
66 AGGACA
93134225 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93134247 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93142785 original size:28 final size:27
Alignment explanation
Indices: 93142722--93142791 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
93142712 ATAGTGAGTC
93142722 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
93142749 CGCACACTTAGTGCTCTATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
93142777 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93142792 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:93145662 original size:39 final size:40
Alignment explanation
Indices: 93145608--93145762 Score: 206
Period size: 39 Copynumber: 3.9 Consensus size: 40
93145598 TGTGTATGAA
*
93145608 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
93145647 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
** * *
93145686 TGTGCGAGTTGTGATATTTGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* * * * *
93145726 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
93145763 GGTTGAACGA
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 62 0.61
40 40 0.39
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.26
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:93145747 original size:79 final size:79
Alignment explanation
Indices: 93145608--93145762 Score: 204
Period size: 79 Copynumber: 2.0 Consensus size: 79
93145598 TGTGTATGAA
* * *
93145608 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTAA
93145673 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* ** * * *
93145686 TGTGCGAGTTGTGATATTTGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTA
*
93145751 TGTCCCGAAGGC
65 AGTCCCGAAGGC
93145763 GGTTGAACGA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 23 0.35
79 33 0.51
80 9 0.14
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.26
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:93150166 original size:28 final size:28
Alignment explanation
Indices: 93150111--93150198 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
93150101 AGCATGGCTG
* * *
93150111 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
*
93150137 CCAGATACAGATAATTGGGGCA-AGGCCA
1 CCAGAAACAGATAATTGGGGCAGA-GCCA
* *
93150165 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
93150193 CCAGAA
1 CCAGAA
93150199 CGCTTCCTCA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.08
27 7 0.14
28 39 0.76
29 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.16
Consensus pattern (28 bp):
CCAGAAACAGATAATTGGGGCAGAGCCA
Found at i:93151485 original size:18 final size:18
Alignment explanation
Indices: 93151431--93151485 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
93151421 CTATAGAGGG
93151431 AAAGAAGAAGAAGAGAA-A
1 AAAGAAGAAG-AGAGAAGA
* * *
93151449 ATAGATGAAGAGAGGAGA
1 AAAGAAGAAGAGAGAAGA
*
93151467 AAAGAAGAAGAGAAAAGA
1 AAAGAAGAAGAGAGAAGA
93151485 A
1 A
93151486 TTGTCAAAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
17 5 0.17
18 24 0.83
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (18 bp):
AAAGAAGAAGAGAGAAGA
Found at i:93156711 original size:26 final size:28
Alignment explanation
Indices: 93156673--93156726 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
93156663 ATCATAGCAC
93156673 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTCGAGGGGTA
* **
93156700 AAAT-AGTTATTTTACCCTTTAGGGGTA
1 AAATCAGTCATTTTACCCTCGAGGGGTA
93156727 TTTTGGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTCGAGGGGTA
Found at i:93156897 original size:18 final size:18
Alignment explanation
Indices: 93156858--93156899 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
93156848 CCATTATGCG
*
93156858 GCCCAAGTAGGCCCACAC
1 GCCCAAGTAGGCCCACAA
*
93156876 GCCCATGTA-GCCCATCAA
1 GCCCAAGTAGGCCCA-CAA
93156894 GCCCAA
1 GCCCAA
93156900 AAATCACCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.29, C:0.43, G:0.19, T:0.10
Consensus pattern (18 bp):
GCCCAAGTAGGCCCACAA
Found at i:93160529 original size:56 final size:56
Alignment explanation
Indices: 93160469--93160600 Score: 201
Period size: 56 Copynumber: 2.4 Consensus size: 56
93160459 TCCTAGATAG
* **
93160469 GGTCTTACTCGCACACATATATCAGAATCACATATCAATGCCAATGTATTAAACAT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACAT
* * *
93160525 GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCTAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACAT
*
93160581 GGTCTTACTCGTACACATAT
1 GGTCTTACTCGCACACATAT
93160601 GTCGATGCCA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACAT
Found at i:93166365 original size:15 final size:15
Alignment explanation
Indices: 93166342--93166404 Score: 81
Period size: 15 Copynumber: 4.2 Consensus size: 15
93166332 TATGATATGG
93166342 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* *
93166357 TACCTTGGATATCTT
1 TATCTTGGATTTCTT
* *
93166372 TATCTTGGATTCCTC
1 TATCTTGGATTTCTT
*
93166387 TGTCTTGGATTTCTT
1 TATCTTGGATTTCTT
93166402 TAT
1 TAT
93166405 TCTGGTTTTC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.54
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:93169909 original size:20 final size:20
Alignment explanation
Indices: 93169884--93169921 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93169874 GTTTATTTGC
*
93169884 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
93169904 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
93169922 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:93171578 original size:28 final size:28
Alignment explanation
Indices: 93171541--93171606 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
93171531 GTAGATCACG
93171541 AATTACCCCTAAAGAGCAAAATTACCGA
1 AATTACCCCTAAAGAGCAAAATTACCGA
*
93171569 AATTACCCCTAAAGAGCAAAATTATCGA
1 AATTACCCCTAAAGAGCAAAATTACCGA
*
93171597 TA-TACCCCTA
1 AATTACCCCTA
93171607 GGGTTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 8 0.22
28 28 0.78
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (28 bp):
AATTACCCCTAAAGAGCAAAATTACCGA
Found at i:93173934 original size:40 final size:40
Alignment explanation
Indices: 93173875--93174082 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
93173865 CAATTGAATG
* * * * *
93173875 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATT
* * * **
93173915 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTTATT
* * *
93173955 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATT
* * *
93173995 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATT
* * * * **
93174035 CTATCCGGGCTAAGACACGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATT
93174075 ATATCCGG
1 ATATCCGG
93174083 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATT
Found at i:93174013 original size:80 final size:80
Alignment explanation
Indices: 93173877--93174082 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
93173867 ATTGAATGAT
* * ** * * *
93173877 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
93173941 TTGTGCTAG-TGACCAC
65 TTGTGCAAGTTGACC-C
* * *
93173957 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
93174022 TGTGCAAGTTGTTCT
66 TGTGCAAGTTGACCC
* * *
93174037 ATCCGGGCTAAGACACGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
93174083 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 101 0.95
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTTGACCC
Found at i:93181287 original size:40 final size:39
Alignment explanation
Indices: 93181243--93181435 Score: 233
Period size: 39 Copynumber: 4.9 Consensus size: 39
93181233 GTTCAAAACA
* * ** * *
93181243 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
93181283 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
93181323 CCTTTGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
93181362 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
93181401 CCTTCGGGCTTAGCCCAGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
93181436 TTCATTCACA
Statistics
Matches: 136, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 97 0.71
40 39 0.29
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:93181354 original size:39 final size:39
Alignment explanation
Indices: 93181273--93181435 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
93181263 TATGGTAACC
* *
93181273 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
93181313 CGCACAATTGCCTTTGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
93181352 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
93181391 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
93181430 CGCACA
1 CGCACA
93181436 TTCATTCACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:93194013 original size:28 final size:28
Alignment explanation
Indices: 93193981--93194036 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
93193971 TACATGGGAG
*
93193981 TCAGAAGAAACCATGAGAAACTAATATC
1 TCAGAAGAAACCATGAGAAACCAATATC
93194009 TCAGAAGAAACCATGAGAAACCAATATC
1 TCAGAAGAAACCATGAGAAACCAATATC
93194037 CAAACATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.50, C:0.20, G:0.14, T:0.16
Consensus pattern (28 bp):
TCAGAAGAAACCATGAGAAACCAATATC
Found at i:93194259 original size:23 final size:23
Alignment explanation
Indices: 93194233--93194279 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
93194223 AAATTTTATG
93194233 AGTAAGGTGTCCAATTGGAAAAT
1 AGTAAGGTGTCCAATTGGAAAAT
93194256 AGTAAGGTGTCCAATTGGAAAAT
1 AGTAAGGTGTCCAATTGGAAAAT
93194279 A
1 A
93194280 AGGACCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (23 bp):
AGTAAGGTGTCCAATTGGAAAAT
Found at i:93201401 original size:27 final size:27
Alignment explanation
Indices: 93201296--93201407 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
93201286 AGGAAGCGTC
* *
93201296 CTGGTGGCTATGCCACAATTATCT-AAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
*
93201323 CTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
93201350 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* * *
93201378 CTAGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
93201404 CTGG
1 CTGG
93201408 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:93201402 original size:54 final size:54
Alignment explanation
Indices: 93201296--93201407 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
93201286 AGGAAGCGTC
* * *
93201296 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTGTT
* * * *
93201350 CTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-AATCTAGTGACTCTGCCACATATATCTGTT
93201404 CTGG
1 CTGG
93201408 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTGTT
Found at i:93206890 original size:29 final size:29
Alignment explanation
Indices: 93206831--93206934 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
93206821 GTGACGAGAT
* **
93206831 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
93206860 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
93206889 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
93206918 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
93206935 AATCGAGTAT
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
28 2 0.03
29 56 0.95
30 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:93214757 original size:29 final size:29
Alignment explanation
Indices: 93214606--93214736 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
93214596 GTGACGAGAT
93214606 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
93214635 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
93214664 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
93214693 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
93214722 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
93214737 GAGCTCGAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:93214783 original size:87 final size:87
Alignment explanation
Indices: 93214606--93214794 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
93214596 GTGACGAGAT
* *
93214606 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
93214671 AAGTGTGCATGCTGGAAAAATA
66 AAGTGTGCAGGCTGGAAAAACA
* * *
93214693 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * * **
93214757 TGTGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAA-AACA
93214780 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
93214795 GAAATCGAGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 3 0.03
87 82 0.95
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAAAACA
Found at i:93222989 original size:38 final size:38
Alignment explanation
Indices: 93222965--93223041 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
93222955 CAAATTGAAG
* *
93222965 TGATTGATTAAAAACTAAAATTAACTAATTAAATAAAC
1 TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
* *
93223003 TGATTGATTAAAAACTAAAATTAACTAATTAAATAAAC
1 TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
93223041 T
1 T
93223042 AAAGAACACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (38 bp):
TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
Found at i:93226682 original size:23 final size:23
Alignment explanation
Indices: 93226639--93226682 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
93226629 GTAACGCTTA
*
93226639 TCAAATCAAACATAAATAATAAT
1 TCAAATCAAAAATAAATAATAAT
*
93226662 TCAAAT-AAAAATTAATGAATA
1 TCAAATCAAAAATAAAT-AATA
93226683 GGGTTCCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.27
Consensus pattern (23 bp):
TCAAATCAAAAATAAATAATAAT
Found at i:93226918 original size:36 final size:36
Alignment explanation
Indices: 93226878--93226948 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
93226868 ATTTTCATTT
*
93226878 GAGCACATTTAGTAGGACCAATAGATATTGCTCGTG
1 GAGCACATTTAGTAGAACCAATAGATATTGCTCGTG
* *
93226914 GAGCACTTTTAGTAGAACCAGTAGATATTGCTCGT
1 GAGCACATTTAGTAGAACCAATAGATATTGCTCGT
93226949 ACTTCAATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (36 bp):
GAGCACATTTAGTAGAACCAATAGATATTGCTCGTG
Found at i:93227028 original size:36 final size:36
Alignment explanation
Indices: 93226820--93227186 Score: 250
Period size: 37 Copynumber: 10.2 Consensus size: 36
93226810 TATTCGACAA
*
93226820 AATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAG
1 AATCAGTAGATATTGCTTG-TTGAGCACTTTCAGTAG
* * * *
93226856 AATAAGTAGACAATTTTCAT-TTGAGCACATTT-AGTAG
1 AATCAGTAGA-TA-TTGCTTGTTGAGCAC-TTTCAGTAG
* * * * * *
93226893 GACCAATAGATATTGCTCGTGGAGCACTTTTAGTAG
1 AATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAG
* * * *
93226929 AACCAGTAGATATTGCTCG-T----AC-TTCAATAA
1 AATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAG
* * * * * *
93226959 AATTAATAAACATTGCTTATTTGAGCACATTCAGTAG
1 AATCAGTAGATATTGCTT-GTTGAGCACTTTCAGTAG
* *
93226996 GATCAGTAGATATTTCTTGTTGAGCACTTTCAGTAG
1 AATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAG
* *
93227032 AATTAGTAGATATTGCTTGTTTAAGCACTTTCAGTAG
1 AATCAGTAGATATTGCTTG-TTGAGCACTTTCAGTAG
* * * ** * *
93227069 AATAAGTAGACATGGCTCATTGAGCACTTTTAGAAG
1 AATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAG
* *
93227105 CATCAGTAGATATTGCTCAT-TTGAGCACTTTCAATAG
1 AATCAGTAGATATTGCT--TGTTGAGCACTTTCAGTAG
* *
93227142 AATCAGTAGATATTGCTCGTTTGACCACTTTCAGTAG
1 AATCAGTAGATATTGCTTG-TTGAGCACTTTCAGTAG
*
93227179 AATTAGTA
1 AATCAGTA
93227187 TTCCATTTTT
Statistics
Matches: 251, Mismatches: 62, Indels: 35
0.72 0.18 0.10
Matches are distributed among these distances:
30 17 0.07
31 2 0.01
32 1 0.00
35 6 0.02
36 108 0.43
37 112 0.45
38 5 0.02
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (36 bp):
AATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAG
Found at i:93227059 original size:73 final size:73
Alignment explanation
Indices: 93226824--93227186 Score: 287
Period size: 73 Copynumber: 5.1 Consensus size: 73
93226814 CGACAAAATC
** * * * *
93226824 AGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATAAGTAGACAATT-TTCATTTGAGCACATT
1 AGTAGATATTGCTTATTTGAGCACTTTCAGTAGAATCAGTAGA-TATTGCTC-GTTGAGCAC-TT
* **
93226887 T-AGTAGGACC
63 TCAGTAGAATT
* ** * * *
93226897 AATAGATATTGC-TCGTGGAGCACTTTTAGTAGAACCAGTAGATATTGCTCG-T----AC-TTCA
1 AGTAGATATTGCTTATTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACTTTCA
* *
93226955 ATAAAATT
66 GTAGAATT
* * * * * * *
93226963 AATAAACATTGCTTATTTGAGCACATTCAGTAGGATCAGTAGATATTTCTTGTTGAGCACTTTCA
1 AGTAGATATTGCTTATTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACTTTCA
93227028 GTAGAATT
66 GTAGAATT
* * * * * * *
93227036 AGTAGATATTGCTTGTTTAAGCACTTTCAGTAGAATAAGTAGACATGGCTCATTGAGCACTTTTA
1 AGTAGATATTGCTTATTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACTTTCA
* * *
93227101 GAAGCATC
66 GTAGAATT
* * *
93227109 AGTAGATATTGCTCATTTGAGCACTTTCAATAGAATCAGTAGATATTGCTCGTTTGACCACTTTC
1 AGTAGATATTGCTTATTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCG-TTGAGCACTTTC
93227174 AGTAGAATT
65 AGTAGAATT
93227183 AGTA
1 AGTA
93227187 TTCCATTTTT
Statistics
Matches: 220, Mismatches: 59, Indels: 21
0.73 0.20 0.07
Matches are distributed among these distances:
65 2 0.01
66 14 0.06
67 32 0.15
68 1 0.00
71 1 0.00
72 12 0.05
73 138 0.63
74 20 0.09
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (73 bp):
AGTAGATATTGCTTATTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACTTTCA
GTAGAATT
Found at i:93231810 original size:17 final size:17
Alignment explanation
Indices: 93231788--93231821 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
93231778 TAGAACTTAA
93231788 TTATAAATCATTTGAGT
1 TTATAAATCATTTGAGT
93231805 TTATAAATCATTTGAGT
1 TTATAAATCATTTGAGT
93231822 CCTAATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (17 bp):
TTATAAATCATTTGAGT
Found at i:93232182 original size:16 final size:17
Alignment explanation
Indices: 93232155--93232189 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
93232145 AATAATCAGG
*
93232155 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
93232172 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
93232188 TT
1 TT
93232190 TAATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:93232194 original size:5 final size:5
Alignment explanation
Indices: 93232180--93232212 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
93232170 AATTGAGAAA
93232180 TTAA- TTAAT TTAAT TTAAT TTAAT TTAAT TTAA
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAA
93232213 ACATGTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTAAT
Found at i:93235743 original size:16 final size:16
Alignment explanation
Indices: 93235724--93235754 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93235714 CTTCTTCACT
93235724 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
93235740 TACTTACTTACTTAA
1 TACTCACTTACTTAA
93235755 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:93235760 original size:20 final size:20
Alignment explanation
Indices: 93235721--93235760 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
93235711 AAACTTCTTC
* *
93235721 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
93235741 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
93235761 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:93236145 original size:108 final size:110
Alignment explanation
Indices: 93235993--93236193 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
93235983 ATCCTTTTGA
* * * *
93235993 AACTTACCATTGCAATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTATAAA-CTCACCAA-
1 AACTTACCAATGCAATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
* *
93236056 TGCCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGT
66 TGACATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
93236101 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCAATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
93236166 TGACATGCCTTGGCATGGTCTTACATGG
66 TGACATGCCTTGGCATGGTCTTACATGG
93236194 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCAATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGACATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:93236148 original size:55 final size:53
Alignment explanation
Indices: 93235993--93236200 Score: 197
Period size: 55 Copynumber: 3.8 Consensus size: 53
93235983 ATCCTTTTGA
* * * *
93235993 AACTTACCATTGCAATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTATA-
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAG
* * * *
93236046 AACTCACCAATGCCATGCCTTGGCATGGTTTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG
* * * *
93236100 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAG
* *
93236154 AACCTTACCAATTGACATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
93236201 AAACCCTAAT
Statistics
Matches: 126, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 44 0.35
54 8 0.06
55 69 0.55
56 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAG
Found at i:93243187 original size:54 final size:53
Alignment explanation
Indices: 93243058--93243252 Score: 214
Period size: 54 Copynumber: 3.6 Consensus size: 53
93243048 TTTGAAATTT
* *
93243058 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTTCCTTATGAACTC
* * *
93243111 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTTCCTTAT-G-AACTC
* *** * *
93243165 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTTCCTTATG-AA-CTC
* *
93243219 ACCAATTGCCATGCCTTGGCATGGTCTTACATGG
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGG
93243253 TATCGTTAAA
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
52 11 0.09
53 35 0.29
54 40 0.33
55 34 0.28
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTTCCTTATGAACTC
Found at i:93250786 original size:28 final size:26
Alignment explanation
Indices: 93250747--93250798 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
93250737 ATTTTTTAGT
*
93250747 AATTAGGGCTAAATTGAAAAATAATA
1 AATTAGGGCTAAAATGAAAAATAATA
93250773 AATTGAGGGACTAAAATGAAAAATAA
1 AATT-AGGG-CTAAAATGAAAAATAA
93250799 ATGAAATGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 4 0.17
27 4 0.17
28 15 0.65
ACGTcount: A:0.56, C:0.04, G:0.17, T:0.23
Consensus pattern (26 bp):
AATTAGGGCTAAAATGAAAAATAATA
Found at i:93251695 original size:50 final size:51
Alignment explanation
Indices: 93251548--93251708 Score: 143
Period size: 50 Copynumber: 3.2 Consensus size: 51
93251538 GCTAAATGAC
* * * *
93251548 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTA-TTGGAT
1 CTTGTATATTCGGCCATATAAGTATGTACATATGTGATGTTATATTTGAAT
* * * * * * *
93251598 CTTGAATATTTGG--GTATGAAGGTATGCACAAATGTGTTATTATATTTGAAT
1 CTTGTATATTCGGCCATAT-AA-GTATGTACATATGTGATGTTATATTTGAAT
* *
93251649 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTG-AT
1 CTTGTATATTCGGCCATATAAGTATGTACATATGTGATGTTATATTTGAAT
*
93251698 CTTGCATATTC
1 CTTGTATATTC
93251709 TGTAACACCC
Statistics
Matches: 84, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
48 2 0.02
49 3 0.04
50 69 0.82
51 7 0.08
52 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (51 bp):
CTTGTATATTCGGCCATATAAGTATGTACATATGTGATGTTATATTTGAAT
Found at i:93254878 original size:25 final size:25
Alignment explanation
Indices: 93254844--93254894 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
93254834 GAAAGAGTTG
93254844 AACTTTTCATGCATTTTCATGTTTT
1 AACTTTTCATGCATTTTCATGTTTT
93254869 AACTTTTCATGCATTTTCATGTTTT
1 AACTTTTCATGCATTTTCATGTTTT
93254894 A
1 A
93254895 TTTATTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.16, G:0.08, T:0.55
Consensus pattern (25 bp):
AACTTTTCATGCATTTTCATGTTTT
Found at i:93258163 original size:39 final size:40
Alignment explanation
Indices: 93257990--93258180 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
93257980 GGATATAGCT
* * * *
93257990 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGAA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
93258030 ACTCGCACAATTGCCTTCGGGACTTAGCCCTGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
93258070 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
93258110 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
93258149 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
93258181 TTATTATCCA
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 33 0.24
40 100 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:93261218 original size:46 final size:46
Alignment explanation
Indices: 93261165--93261380 Score: 251
Period size: 46 Copynumber: 4.6 Consensus size: 46
93261155 ATTGTTGGCT
*
93261165 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-GATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATGA-GATGAGAGCC
* * *
93261211 AGTGTAAGACCATGTCTGGGACATCGCATCAG-CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-TGAGATGAGAGCC
93261259 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-GAGATG-AGAGCC
* * * *
93261305 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATGAGATGAGAGCC
*
93261351 AGTGTAAGACCATGTCGGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
93261381 AGCACCTTAC
Statistics
Matches: 148, Mismatches: 11, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.01
46 72 0.49
47 45 0.30
48 27 0.18
49 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATGAGATGAGAGCC
Found at i:93261380 original size:94 final size:94
Alignment explanation
Indices: 93261162--93261380 Score: 279
Period size: 94 Copynumber: 2.3 Consensus size: 94
93261152 GTTATTGTTG
*
93261162 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTC
*
93261227 TGGGACATCGCATCAGCATTGAGACGAGA
66 TGGGACATCGCATCAGCATCGAGACGAGA
*
93261256 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-AGATGATG-AGAGCCAGTGTAAGACCATG
* * *
93261318 TCTGGGACAT-GCATCGGC-TACGAGATGATA
64 TCTGGGACATCGCATCAGCAT-CGAGACGAGA
*
93261348 G-TCAGTGTAAGACCATGTCGGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
93261381 AGCACCTTAC
Statistics
Matches: 112, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
91 2 0.02
92 24 0.21
93 27 0.24
94 56 0.50
95 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATCGCATCAGCATCGAGACGAGA
Found at i:93262476 original size:21 final size:21
Alignment explanation
Indices: 93262444--93262490 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
93262434 TTTTCATTGA
*
93262444 AAACCCTTTTAAAAT-AAAAG
1 AAACCCTATTAAAATAAAAAG
**
93262464 AAACCCTAATTAACTTAAAAAG
1 AAACCCT-ATTAAAATAAAAAG
93262486 AAACC
1 AAACC
93262491 TTTCAGTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 7 0.32
21 5 0.23
22 10 0.45
ACGTcount: A:0.55, C:0.19, G:0.04, T:0.21
Consensus pattern (21 bp):
AAACCCTATTAAAATAAAAAG
Found at i:93263568 original size:29 final size:29
Alignment explanation
Indices: 93263496--93263557 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
93263486 TACCTGTATC
* * *
93263496 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCAGTAGGCCCAAATCACATTCATA
*
93263524 TGGCCCAGTAGGCCCAAATCACATTTATA
1 TGGCCCAGTAGGCCCAAATCACATTCATA
93263553 TGGCC
1 TGGCC
93263558 TGTTAGGCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCAGTAGGCCCAAATCACATTCATA
Found at i:93263841 original size:24 final size:24
Alignment explanation
Indices: 93263792--93263842 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
93263782 GTAGCTAAAC
* *
93263792 TTTCAGCTTTTCGGCGTTTTGACT
1 TTTCAGCTTTTCGGCGATTTCACT
*
93263816 TTTCAGCTTTTTGGC-ATTTCATCT
1 TTTCAGCTTTTCGGCGATTTCA-CT
93263840 TTT
1 TTT
93263843 GTCGATACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.10, C:0.20, G:0.16, T:0.55
Consensus pattern (24 bp):
TTTCAGCTTTTCGGCGATTTCACT
Found at i:93271171 original size:29 final size:29
Alignment explanation
Indices: 93271105--93271204 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 29
93271095 TACCTGTATC
* * *
93271105 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
93271133 TAGCCTATTAGGCCCAAATCACCTGTT-TA
1 TGGCCCATTAGGCCCAAATCACAT-TTATA
93271162 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
93271191 TGGCCCGTTAGGCC
1 TGGCCCATTAGGCC
93271205 TAGTCACATT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
28 14 0.24
29 44 0.75
30 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:93271779 original size:13 final size:13
Alignment explanation
Indices: 93271741--93271779 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
93271731 AAGTAATCGT
*
93271741 ACACGGGCGTGTA
1 ACACGGGCGTGTC
*
93271754 ACATGGGCGTGTC
1 ACACGGGCGTGTC
93271767 ACACGGGCGTGTC
1 ACACGGGCGTGTC
93271780 CCTGCCGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.18, C:0.26, G:0.38, T:0.18
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:93278594 original size:39 final size:40
Alignment explanation
Indices: 93278494--93278684 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
93278484 TCGAATGATG
* * * *
93278494 TCCGGGCTAAGTCCCGAAGGCCTT-GTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * *
93278534 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
93278574 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
93278613 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
* * *
93278654 -CCGGGCT-TGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
93278685 CGTTATATCC
Statistics
Matches: 126, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
39 54 0.43
40 65 0.52
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:93278633 original size:79 final size:82
Alignment explanation
Indices: 93278494--93278677 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
93278484 TCGAATGATG
* * * *
93278494 TCCGGGCTAAGTCCCGAAGGC-CTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
93278558 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* **
93278574 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
93278636 TCGTGCGAGTTACTATAA
65 TCGTGCGAGTTAATATAA
*
93278654 -CCGGGCT-TGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93278678 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 2 0.02
79 70 0.77
80 19 0.21
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Found at i:93281963 original size:40 final size:40
Alignment explanation
Indices: 93281919--93282067 Score: 115
Period size: 40 Copynumber: 3.7 Consensus size: 40
93281909 TTTAACCAGA
* * *
93281919 TATAGCGACTCGCTCGATTGTCTTCGGGACATT-GCCCGGT
1 TATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGCCCGGT
* * *
93281959 TATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCAGAT
1 TATAGCGACTCGCACAATTGCCTTCGGGAATTAGCCC-GGT
** * *
93282000 T-TAGTAACTCGCACGAA-TGCCTTCGGGACTTAACCCGGT
1 TATAGCGACTCGCAC-AATTGCCTTCGGGAATTAGCCCGGT
* * ** *
93282039 TTTGGTAACTCGCACAAATGCCTTCGGGA
1 TATAGCGACTCGCACAATTGCCTTCGGGA
93282068 CAACCCGGTT
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
39 8 0.09
40 79 0.86
41 5 0.05
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
TATAGCGACTCGCACAATTGCCTTCGGGAATTAGCCCGGT
Found at i:93282068 original size:40 final size:40
Alignment explanation
Indices: 93281968--93282157 Score: 213
Period size: 40 Copynumber: 4.8 Consensus size: 40
93281958 TTATAGTGAT
* * * *
93281968 TCGCACAATTGCCTTCGGGAATTAGCCCAGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
93282008 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* *
93282048 TCGCACAAATGCCTTCGGGAC--AACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * * *
93282086 TCGCACAAATGCTTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
93282126 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAACCCGGA
93282158 CACCATTCAA
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
38 36 0.28
40 66 0.52
41 25 0.20
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
Found at i:93282114 original size:78 final size:81
Alignment explanation
Indices: 93281967--93282154 Score: 213
Period size: 78 Copynumber: 2.4 Consensus size: 81
93281957 GTTATAGTGA
* *
93281967 TTCGCACAATTGCCTTCGGGA-ATTAGCCCAGATTTAGTAACTCGCACGAATGCCTTCGGGACTT
1 TTCGCACAAATGCCTTCGGGACA-TAGCCCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTT
* *
93282031 AACCCGGTTTTGGTAAC
65 AACCCGGATTTAGTAAC
* * * * * *
93282048 -TCGCACAAATGCCTTCGGGACA-A-CCCGGTTTTGGTAACTCGCACAAATGCTTTCGGGAGTTG
1 TTCGCACAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTA
*
93282110 ACCCGGATTTAGTCAC
66 ACCCGGATTTAGTAAC
* * *
93282126 TTAGCACAAAAGCCTTCGGGACTTAGCCC
1 TTCGCACAAATGCCTTCGGGACATAGCCC
93282155 GGACACCATT
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 45 0.51
79 20 0.22
80 20 0.22
81 4 0.04
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
TTCGCACAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTA
ACCCGGATTTAGTAAC
Found at i:93288486 original size:13 final size:13
Alignment explanation
Indices: 93288463--93288491 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
93288453 TTTAATTTAA
93288463 TTAGTTAATTAGT
1 TTAGTTAATTAGT
93288476 TTAGTTAATTAGT
1 TTAGTTAATTAGT
93288489 TTA
1 TTA
93288492 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:93293904 original size:14 final size:14
Alignment explanation
Indices: 93293881--93293911 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
93293871 TCCTCTTATC
93293881 TTTTTATTTTTCTT
1 TTTTTATTTTTCTT
*
93293895 TTTTTCTTTTTCTT
1 TTTTTATTTTTCTT
93293909 TTT
1 TTT
93293912 ATTTTCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTATTTTTCTT
Found at i:93293904 original size:20 final size:20
Alignment explanation
Indices: 93293879--93293916 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93293869 AATCCTCTTA
*
93293879 TCTTTTTATTTTTCTTTTTT
1 TCTTTTTATTTTTATTTTTT
*
93293899 TCTTTTTCTTTTTATTTT
1 TCTTTTTATTTTTATTTT
93293917 CATTTCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (20 bp):
TCTTTTTATTTTTATTTTTT
Found at i:93296825 original size:13 final size:13
Alignment explanation
Indices: 93296807--93296835 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
93296797 TTTACTTTAA
93296807 TTAGTTAATTAGT
1 TTAGTTAATTAGT
93296820 TTAGTTAATTAGT
1 TTAGTTAATTAGT
93296833 TTA
1 TTA
93296836 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:93306601 original size:14 final size:14
Alignment explanation
Indices: 93306584--93306613 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93306574 TTAAAGCACG
*
93306584 AAAATTTCACACAT
1 AAAAATTCACACAT
93306598 AAAAATTCACACAT
1 AAAAATTCACACAT
93306612 AA
1 AA
93306614 TAAAGTCAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAATTCACACAT
Found at i:93308106 original size:34 final size:34
Alignment explanation
Indices: 93308055--93308149 Score: 156
Period size: 34 Copynumber: 2.8 Consensus size: 34
93308045 GAGCCCATTG
* *
93308055 GGCCTAAGCCCTATTCAGATAACAGTACACAGTA
1 GGCCGAAGCCCTTTTCAGATAACAGTACACAGTA
93308089 GGCCGAAGCCCTTTTCAGATAACAGTACACAGTA
1 GGCCGAAGCCCTTTTCAGATAACAGTACACAGTA
93308123 GGCCGAAGCCCTTTTCAGA-ATACAGTA
1 GGCCGAAGCCCTTTTCAGATA-ACAGTA
93308150 GCAAGGCCTT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
33 1 0.02
34 57 0.98
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (34 bp):
GGCCGAAGCCCTTTTCAGATAACAGTACACAGTA
Found at i:93308563 original size:28 final size:28
Alignment explanation
Indices: 93308516--93308612 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
93308506 ATTTAAACCC
* *
93308516 TAGGGGT-ATATT-GGTAATTTTTCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
93308543 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
93308571 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
93308599 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
93308613 TGATCTATGC
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
27 9 0.14
28 55 0.86
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.46
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:93309325 original size:27 final size:27
Alignment explanation
Indices: 93309246--93309318 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
93309236 TTTTACCCTA
** *
93309246 CAAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
93309273 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
93309300 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
93309319 CTGTAAATTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:93309332 original size:27 final size:27
Alignment explanation
Indices: 93309302--93309372 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
93309292 TTATAAACCA
* *
93309302 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
93309329 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
93309356 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
93309373 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:93312720 original size:12 final size:12
Alignment explanation
Indices: 93312703--93312727 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93312693 ATGTAAATGA
93312703 TCTTGATGATTT
1 TCTTGATGATTT
93312715 TCTTGATGATTT
1 TCTTGATGATTT
93312727 T
1 T
93312728 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:93313519 original size:47 final size:46
Alignment explanation
Indices: 93313444--93313761 Score: 191
Period size: 47 Copynumber: 6.7 Consensus size: 46
93313434 GATTACTTAT
*
93313444 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGCCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGCCCACATGATGA
* * * *
93313490 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTG-GCATAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCCACA-TGATGA
* * * * * *
93313538 GTACCACTGTAAGGCATGTCTGGGACATGCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGCCCAC-ATGATGA
* * ** *
93313585 -TAGCCAGTGTAAGACGTGTCTGGGACATGCATCG-GCTGA-GA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGCCCACATGATG-A
* * ** * * *
93313629 GTGCTAGTGTAAGACATGTCTGAGACATGCATCAGCATGTATAT-ACGG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-GC--CCACATGATGA
* * * * *
93313677 GAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATGAT-A
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCCAC-ATGATGA
*
93313725 ATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
93313762 GTAACTTATC
Statistics
Matches: 212, Mismatches: 41, Indels: 35
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 30 0.14
45 3 0.01
46 22 0.10
47 65 0.31
48 39 0.18
49 47 0.22
50 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGCCCACATGATGA
Found at i:93333659 original size:40 final size:40
Alignment explanation
Indices: 93333517--93333708 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
93333507 TTGAATGATG
* * *
93333517 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** * * *
93333557 TCCGGACTAAGAT-CCGAAGGTGTTCGTACGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
93333597 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
93333636 CCCGGGTTAAGTCCCGAAGGCATTCGTGCCAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** * *
93333677 -CCGGGCTTTGTCCCGAAGACATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
93333709 CGTTATATCC
Statistics
Matches: 122, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
39 31 0.25
40 83 0.68
41 8 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93333662 original size:79 final size:81
Alignment explanation
Indices: 93333517--93333708 Score: 196
Period size: 79 Copynumber: 2.4 Consensus size: 81
93333507 TTGAATGATG
* * * **
93333517 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
93333581 CGTACGAGTTAATA-AA
65 CGTACCAGTTAATATAA
* **
93333597 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
* *
93333660 CGTGCCAGTTACTATAA
65 CGTACCAGTTAATATAA
** * *
93333677 -CCGGGCTTTGTCCCGAAGACATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
93333709 CGTTATATCC
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 53 0.57
80 39 0.42
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTACCAGTTAATATAA
Found at i:93338725 original size:78 final size:80
Alignment explanation
Indices: 93338643--93338793 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
93338633 GGTTATAGCG
* * * *
93338643 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
93338705 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
93338721 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
93338786 AGCCCGGA
66 AGCCCGGA
93338794 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:93338734 original size:39 final size:39
Alignment explanation
Indices: 93338603--93338793 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
93338593 GGATATAACG
* ** **
93338603 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
93338643 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
93338683 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
93338721 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
93338761 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
93338794 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:93346748 original size:39 final size:39
Alignment explanation
Indices: 93346617--93346807 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
93346607 GGATATAACG
* ** **
93346617 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
93346657 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
93346697 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
93346735 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
93346775 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
93346808 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:93346752 original size:78 final size:80
Alignment explanation
Indices: 93346657--93346807 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
93346647 GGTTATAGCG
* * * *
93346657 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
93346719 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
93346735 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
93346800 AGCCCGGA
66 AGCCCGGA
93346808 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:93350761 original size:40 final size:39
Alignment explanation
Indices: 93350678--93350869 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
93350668 TTGAATGATG
* * * * *
93350678 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
93350718 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
93350758 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
93350797 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
93350838 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
93350870 CGTTATATCC
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:93350823 original size:79 final size:81
Alignment explanation
Indices: 93350678--93350869 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
93350668 TTGAATGATG
* * * *
93350678 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
93350742 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
93350758 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
93350821 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
93350838 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
93350870 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Done.