Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 299 of 438
Found at i:93606671 original size:46 final size:46
Alignment explanation
Indices: 93606604--93606782 Score: 138
Period size: 46 Copynumber: 3.9 Consensus size: 46
93606594 ATATATATAC
* * *
93606604 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
93606650 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
93606696 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C-
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATCT
* * *
93606743 ATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
93606783 CATACGCATG
Statistics
Matches: 113, Mismatches: 14, Indels: 15
0.80 0.10 0.11
Matches are distributed among these distances:
43 4 0.04
45 36 0.32
46 44 0.39
47 22 0.19
48 1 0.01
49 6 0.05
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:93606729 original size:47 final size:47
Alignment explanation
Indices: 93606667--93606927 Score: 445
Period size: 47 Copynumber: 5.6 Consensus size: 47
93606657 ACACATTTCG
* * * *
93606667 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
93606714 CATTGGCCATTCGGCCTTATCACACAT--ACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93606759 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93606806 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
93606853 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93606900 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
93606928 TATATACAGG
Statistics
Matches: 206, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
45 45 0.22
47 161 0.78
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:93606850 original size:139 final size:140
Alignment explanation
Indices: 93606667--93606927 Score: 452
Period size: 139 Copynumber: 1.9 Consensus size: 140
93606657 ACACATTTCG
* *
93606667 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
93606732 ATCACACAT-ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
66 ATCACACATAACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
93606796 ACATTCATCA
131 ACATTCATCA
* * *
93606806 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
93606871 ATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATA
66 ATCACACATA-ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA
93606928 TATATACAGG
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
139 69 0.61
141 45 0.39
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (140 bp):
CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATAACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
ACATTCATCA
Found at i:93610485 original size:40 final size:40
Alignment explanation
Indices: 93610371--93610908 Score: 958
Period size: 40 Copynumber: 13.6 Consensus size: 40
93610361 CCAGCATGAT
***
93610371 TGCTCTTCGGGACCCAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
*
93610410 TGCTCTTCGGGATTTAG-CCCGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
*
93610449 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610489 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610529 TGCTC-TCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610568 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610608 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610648 TGCTCTTCGGGATTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610687 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610727 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610767 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
*
93610807 TGCTCTTCGGGATTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* *
93610847 TGCTCTTCGGGATTTAGTCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* *
93610887 TGCTCTTCGGGACTTAGCCCGG
1 TGCTCTTCGGGATTTAGTCCGG
93610909 CTATACAACT
Statistics
Matches: 486, Mismatches: 10, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
39 130 0.27
40 356 0.73
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
Found at i:93610581 original size:119 final size:119
Alignment explanation
Indices: 93610371--93610905 Score: 957
Period size: 119 Copynumber: 4.5 Consensus size: 119
93610361 CCAGCATGAT
*** *
93610371 TGCTCTTCGGGACCCAG-CCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGATAC
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCGGATAC
*
93610435 ATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610489 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTC-TCGGGATTTAGTCCGGATA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAG-CCGGATA
93610553 CATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
65 CATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610608 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCGGATAC
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCGGATAC
93610673 ATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
93610727 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAG-CCGGATA
*
93610792 CATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATATATCACTAGCACGAA
65 CATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* * *
93610847 TGCTCTTCGGGATTTAGTCCGGATATATCACTAGCACAAATGCTCTTCGGGACTTAGCC
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
93610906 CGGCTATACA
Statistics
Matches: 404, Mismatches: 9, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
118 25 0.06
119 253 0.63
120 126 0.31
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (119 bp):
TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCGGATAC
ATCACTAGCACGAATGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
Found at i:93613258 original size:46 final size:46
Alignment explanation
Indices: 93613191--93613324 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
93613181 ATATATATAC
* * *
93613191 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
93613237 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
93613283 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
93613325 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:93613316 original size:47 final size:47
Alignment explanation
Indices: 93613254--93613516 Score: 454
Period size: 47 Copynumber: 5.6 Consensus size: 47
93613244 ACACATTTCG
* * * *
93613254 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93613301 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93613348 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93613395 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
93613442 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93613489 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
93613517 TATATACAGG
Statistics
Matches: 209, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 209 1.00
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:93613579 original size:141 final size:138
Alignment explanation
Indices: 93613285--93613571 Score: 348
Period size: 141 Copynumber: 2.1 Consensus size: 138
93613275 ACATATATAC
*
93613285 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA
1 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
* * ** * *
93613350 TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
66 TTGGCCATTCGGCCTTATCACACATACACAGGTTCACATTCATCACATT-GAAAAT--GCCTAAT
* **
93613415 CACACATACGC
128 CACAAATACAA
93613426 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
1 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
* *
93613491 TTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACA-T-AAAAT-CCTAA
66 TTGGCCATTCGGCCTTATCA--C--ACATACACAGGTTCACATTCATCACATTGAAAATGCCT-A
*
93613553 ATCA-AAATATAA
126 ATCACAAATACAA
*
93613565 ATTTTCA
1 ATGTTCA
93613572 TGTATTCACA
Statistics
Matches: 127, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
139 13 0.10
140 4 0.03
141 84 0.66
142 2 0.02
143 1 0.01
144 1 0.01
145 22 0.17
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.31
Consensus pattern (138 bp):
ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
TTGGCCATTCGGCCTTATCACACATACACAGGTTCACATTCATCACATTGAAAATGCCTAATCAC
AAATACAA
Found at i:93617970 original size:29 final size:29
Alignment explanation
Indices: 93617938--93618003 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
93617928 CCTGCACACA
* *
93617938 TAGTGCCATATAATCCAAACTCGCAAACT
1 TAGTGCCATACAATACAAACTCGCAAACT
* * *
93617967 TAGTGCCATACATTACAAGCTCGCACACT
1 TAGTGCCATACAATACAAACTCGCAAACT
*
93617996 CAGTGCCA
1 TAGTGCCA
93618004 ATCTCGTCAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (29 bp):
TAGTGCCATACAATACAAACTCGCAAACT
Found at i:93621143 original size:22 final size:22
Alignment explanation
Indices: 93621102--93621143 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
93621092 GCATTTTATT
*
93621102 TTTGTTTTTATTTTTTTTCTAA
1 TTTGTTTTTATTTTTCTTCTAA
93621124 TTTGTCTTTTA-TTTTCTTCT
1 TTTGT-TTTTATTTTTCTTCT
93621144 GGCAGGTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTGTTTTTATTTTTCTTCTAA
Found at i:93624844 original size:16 final size:15
Alignment explanation
Indices: 93624825--93624858 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
93624815 TTTTTTAATT
93624825 TTTATTTATTTCCTTA
1 TTTATTTATTT-CTTA
93624841 TTTATTTATTTCTTA
1 TTTATTTATTTCTTA
93624856 TTT
1 TTT
93624859 CTTAAGTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTATTTCTTA
Found at i:93633183 original size:33 final size:34
Alignment explanation
Indices: 93633101--93633184 Score: 84
Period size: 33 Copynumber: 2.5 Consensus size: 34
93633091 ATTTTATTTC
* * *
93633101 TTATTTTATTTTATT-TTTAGTTTATTCCTTTTTG
1 TTATTTT-TATTATTATTTAGTTTATCCCTTTTAG
* *
93633135 TTATTTTTCTGATTATTTAGTTT-TCCCATTTTAG
1 TTATTTTTATTATTATTTAGTTTATCCC-TTTTAG
93633169 -TATTTTTATTATTATT
1 TTATTTTTATTATTATT
93633185 CTTATTTGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
33 22 0.52
34 20 0.48
ACGTcount: A:0.18, C:0.07, G:0.06, T:0.69
Consensus pattern (34 bp):
TTATTTTTATTATTATTTAGTTTATCCCTTTTAG
Found at i:93635762 original size:15 final size:14
Alignment explanation
Indices: 93635729--93635767 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
93635719 ATTGTTCTCA
93635729 AAAAATAAATTGATC
1 AAAAA-AAATTGATC
*
93635744 AAAAAAAATTGATG
1 AAAAAAAATTGATC
*
93635758 GAAAAAAATT
1 AAAAAAAATT
93635768 CATATATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.64, C:0.03, G:0.10, T:0.23
Consensus pattern (14 bp):
AAAAAAAATTGATC
Found at i:93648466 original size:46 final size:46
Alignment explanation
Indices: 93648416--93648582 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 46
93648406 AGCATCTGAA
*
93648416 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAG
* * * * *
93648462 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCGAG
* * * * ** *
93648509 CTCGTTGACTTGGGTCCGAGTTCATTTATGGATGCGAACACCCGTG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAG
93648555 CTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA
93648583 GGGGCGGGTT
Statistics
Matches: 96, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 53 0.55
47 26 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAG
Found at i:93648566 original size:93 final size:93
Alignment explanation
Indices: 93648407--93648577 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
93648397 GGATGGTTGA
* * ***
93648407 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTGAGT
93648472 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
93648500 GCATCCGAACTCGTTGACTTGGGTCCGAGTTCATTTATGGATGCGAACACCCGTGCTCGTTGAGT
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTGAGT
93648565 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93648578 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:93656758 original size:6 final size:6
Alignment explanation
Indices: 93656740--93656827 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
93656730 AAGAAACATT
* *
93656740 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
93656789 ATCAGA ATCAGG ATCATGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
93656828 GTGAATACAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:93656785 original size:31 final size:31
Alignment explanation
Indices: 93656749--93656827 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
93656739 TATCAGAACT
* *
93656749 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
93656780 AGAATCAGAATCAGAATCAGGATCATGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
93656811 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
93656828 GTGAATACAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:93657286 original size:27 final size:27
Alignment explanation
Indices: 93657247--93657584 Score: 421
Period size: 27 Copynumber: 12.6 Consensus size: 27
93657237 TACCTCACAA
*
93657247 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
93657274 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
93657301 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
93657328 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93657355 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93657382 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
93657409 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
93657436 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
93657462 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* **
93657489 GGTATTTCGGTAATTTTACAAGT-CAGG
1 GGTATTTCGGTAATTCTAC-CCTACAGG
** * ** *
93657516 GGTATTTTAGTAATTTTA-CAAACCAGA
1 GGTATTTCGGTAATTCTACCCTA-CAGG
* *
93657543 GGTATTTTGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93657570 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
93657585 TCACAATCGA
Statistics
Matches: 268, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.09
27 242 0.90
28 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:93657597 original size:27 final size:26
Alignment explanation
Indices: 93657486--93657597 Score: 75
Period size: 27 Copynumber: 4.2 Consensus size: 26
93657476 TCTACCCTAT
* *
93657486 AGGGGTATTTCGGTAATTTTACAAGTC
1 AGGGGTATTTCAGTAATTTCACAA-TC
* * *
93657513 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTCAGTAATTTCAC-AATC
* ** *
93657540 AGAGGTATTTTGGTAA-TTCTATC-CTAC
1 AGGGGTATTTCAGTAATTTC-A-CAAT-C
93657567 AGGGGTATTTCAGTAATTTCACAATC
1 AGGGGTATTTCAGTAATTTCACAATC
93657593 GAGGG
1 -AGGG
93657598 TAAAACGGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
26 4 0.06
27 56 0.85
28 6 0.09
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (26 bp):
AGGGGTATTTCAGTAATTTCACAATC
Found at i:93658152 original size:27 final size:27
Alignment explanation
Indices: 93657589--93658150 Score: 490
Period size: 27 Copynumber: 20.9 Consensus size: 27
93657579 GTAATTTCAC
*
93657589 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
93657616 AATTGCGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
93657643 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
93657670 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
93657697 AATCGAGGGTGAAACGATAATT-TATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
93657723 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
93657750 AATCGAGGG-AATTTCAGTAATT-T-TAA
1 AATCGAGGGTAA-AACGGTAATTCTGT-A
* * * ****** * *
93657776 AATGGACGATATTTTAATAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* ****
93657803 AATCGGGGGTACTTTGGTAATT-T-TA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **** *
93657828 CTGATCGAGGGTATTTTGGTAATTTTGTA
1 --AATCGAGGGTAAAACGGTAATTCTGTA
* *** ** *
93657857 AA-CTAAGGGTATTTCAATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
93657884 AATCGAGGATAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
93657911 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
93657938 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
93657965 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
93657992 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
93658019 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
93658046 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
93658073 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
93658100 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
93658127 AATCGAGGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAACGGTAATTCT
93658151 ATCTTACAGG
Statistics
Matches: 459, Mismatches: 64, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
25 2 0.00
26 42 0.09
27 410 0.89
28 3 0.01
29 2 0.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:93658192 original size:27 final size:27
Alignment explanation
Indices: 93658162--93658311 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
93658152 TCTTACAGGA
93658162 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
93658189 GTATTTCAATAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
93658216 GTATTTCTGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* ** * *
93658243 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
93658270 GTACTTT-GGTAATTTTACAAGTTGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
93658297 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
93658312 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.04
27 95 0.92
28 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:93658248 original size:81 final size:82
Alignment explanation
Indices: 93658158--93658311 Score: 195
Period size: 81 Copynumber: 1.9 Consensus size: 82
93658148 TCTATCTTAC
*
93658158 AGGAGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTCAATAATTTTGCAAACTGAGGGTATTT
1 AGGAGTATTTCAGTAATTTTACAAATCGAGGGTACTTT-AATAATTTTACAAACTGAGGGTATTT
*
93658222 CTGTAATTTTACAAATCG
65 CAGTAATTTTACAAATCG
** * * ** **
93658240 AGGA-TATTTGGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTC
1 AGGAGTATTTCAGTAATTTTACAAATCGAGGGTACTTTAATAATTTTACAAACTGAGGGTATTTC
93658304 AGTAATTT
66 AGTAATTT
93658312 GGTAAACTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 54 0.89
82 7 0.11
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (82 bp):
AGGAGTATTTCAGTAATTTTACAAATCGAGGGTACTTTAATAATTTTACAAACTGAGGGTATTTC
AGTAATTTTACAAATCG
Found at i:93660310 original size:6 final size:6
Alignment explanation
Indices: 93660292--93660379 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
93660282 AAGAAACATT
* * *
93660292 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
93660341 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
93660380 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:93660339 original size:31 final size:31
Alignment explanation
Indices: 93660303--93660379 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
93660293 TCAGAACTAG
* *
93660303 AATCAGAATCAGAATCAGAATTAGGTGACAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
* *
93660334 AATCAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
*
93660365 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
93660380 GTGAATGCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAA
Found at i:93660838 original size:27 final size:27
Alignment explanation
Indices: 93660799--93661189 Score: 493
Period size: 27 Copynumber: 14.6 Consensus size: 27
93660789 TACCTCACAA
*
93660799 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
93660826 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
93660853 GGTATTTCGGTATTTTTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93660880 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93660907 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93660934 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
93660961 GGTATTGCGATAATTCTA-CCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93660987 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
93661014 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93661041 GGTATTTCAGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
93661067 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* **
93661094 GGTATTTCGGTAATTTTACAAGT-CAGG
1 GGTATTTCGGTAATTCTAC-CCTACAGG
** * **
93661121 GGTATTTTAGTAATTTTA-CAAACCAGG
1 GGTATTTCGGTAATTCTACCCTA-CAGG
* *
93661148 GGTATTTTGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
93661175 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
93661190 TCACAATCGA
Statistics
Matches: 314, Mismatches: 44, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 46 0.15
27 265 0.84
28 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:93661030 original size:107 final size:108
Alignment explanation
Indices: 93660781--93661180 Score: 497
Period size: 107 Copynumber: 3.7 Consensus size: 108
93660771 GGGGCAAAAT
* * * *
93660781 GGTAATTTTA-CCTCACAA-GGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
1 GGTAATTCTACCCT-ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
* * * * *
93660844 CCCTACAGGGGTATTTCGGTATTTTTACCCTACAAGGGTATTTC
65 CCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTC
* * * *
93660888 GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
93660953 CCTACAGGGGTATTGCGATAATTCTA-CCTACAGGGGTATTTC
66 CCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTC
*
93660995 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
*
93661060 CCTACA-GGGTATTGCGATAATTCTACCCTATAGGGGTATTTC
66 CCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTC
* ** * * * ** **
93661102 GGTAATTTTACAAGT-CAGGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTCT
1 GGTAATTCTAC-CCTACAAGGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTTCAGTAATTCT
*
93661165 ATCCTACAGGGGTATT
64 ACCCTACAGGGGTATT
93661181 TCAGTAATTT
Statistics
Matches: 256, Mismatches: 31, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
106 21 0.08
107 161 0.63
108 74 0.29
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (108 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTC
Found at i:93661202 original size:27 final size:26
Alignment explanation
Indices: 93661091--93661202 Score: 84
Period size: 27 Copynumber: 4.2 Consensus size: 26
93661081 TCTACCCTAT
* *
93661091 AGGGGTATTTCGGTAATTTTACAAGTC
1 AGGGGTATTTCAGTAATTTCACAA-TC
* * *
93661118 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTCAGTAATTTCAC-AATC
** *
93661145 AGGGGTATTTTGGTAA-TTCTATC-CTAC
1 AGGGGTATTTCAGTAATTTC-A-CAAT-C
93661172 AGGGGTATTTCAGTAATTTCACAATC
1 AGGGGTATTTCAGTAATTTCACAATC
93661198 GAGGG
1 -AGGG
93661203 TAAAACGGTA
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
26 4 0.06
27 58 0.85
28 6 0.09
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (26 bp):
AGGGGTATTTCAGTAATTTCACAATC
Found at i:93661204 original size:134 final size:133
Alignment explanation
Indices: 93660809--93661189 Score: 532
Period size: 134 Copynumber: 2.8 Consensus size: 133
93660799 GGTATCTCGG
** *
93660809 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTTTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTCGGTAATTTTACCC
*
93660874 TACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTAT
65 TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACA-GGGTAT
*
93660939 TCCGG
129 TCCGA
* * *
93660944 TAATTCTACCCTACAGGGGTATTGCGATAATTCTACCTACAGGGGTATTTCGGTAATTCTACCCT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTACAGGGGTATTTCGGTAATTTTACCCT
*
93661009 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTG
66 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTC
93661074 CGA
131 CGA
* * * **
93661077 TAATTCTACCCTATAGGGGTATTTCGGTAATTTTA-CAAGTCAGGGGTATTTTAGTAATTTTA-C
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTA--CAGGGGTATTTCGGTAATTTTACC
** * * *
93661140 AAACCAGGGGTATTTTGGTAATTCTATCCTACAGGGGTATTTCAGTAATT
64 CTA-CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATT
93661190 TCACAATCGA
Statistics
Matches: 221, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
132 2 0.01
133 42 0.19
134 146 0.66
135 31 0.14
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (133 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTACAGGGGTATTTCGGTAATTTTACCCT
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTC
CGA
Found at i:93661726 original size:27 final size:27
Alignment explanation
Indices: 93661194--93661729 Score: 415
Period size: 27 Copynumber: 20.0 Consensus size: 27
93661184 GTAATTTCAC
* * *
93661194 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
93661221 AA-CTGCGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
93661248 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * * *
93661275 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
93661302 AATCGAGGGTGAAACGATAATT-TATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
93661328 AATCAAGGGTAAAATTGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
* ** * *
93661355 AATCGAGGG-CATTTCAGTAATTTTA-A
1 AATCGAGGGTAAAAT-GGTAATTCTATA
* *** ** *
93661381 AATCGACGGTATTTTAATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *** *
93661408 AACCGGGGGTACTTTGGTAATTTTACT-
1 AATCGAGGGTAAAATGGTAATTCTA-TA
* *** * *
93661435 GATCGAGGGTATTTTGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
93661462 AA-CTAAGGGTATTCAA---TAATTTTGTA
1 AATC-GAGGGTA--AAATGGTAATTCTATA
* ** *
93661488 AATCGAGGATAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
93661515 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
93661542 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
93661569 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
93661596 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
93661623 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
** * *
93661650 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
93661677 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
93661704 AATCGAGGGTAAAATGGTAATTCTAT
1 AATCGAGGGTAAAATGGTAATTCTAT
93661730 CTTACAGGAG
Statistics
Matches: 427, Mismatches: 67, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.00
26 60 0.14
27 364 0.85
28 1 0.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:93661769 original size:27 final size:27
Alignment explanation
Indices: 93661739--93661888 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
93661729 TCTTACAGGA
93661739 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
93661766 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
93661793 GTATTTCTGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* ** * *
93661820 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
93661847 GTACTTT-GGTAATTTTACAAGTTGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
93661874 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
93661889 GGTCAACTAA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.04
27 97 0.92
28 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:93663285 original size:30 final size:30
Alignment explanation
Indices: 93663249--93663307 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
93663239 GGTTCGATTG
93663249 CTGGTAGGCACATTGGGGTGTTTTATTTTA
1 CTGGTAGGCACATTGGGGTGTTTTATTTTA
93663279 CTGGTAGGCACATTGGGGTGTTTTATTTT
1 CTGGTAGGCACATTGGGGTGTTTTATTTT
93663308 GCTGTTGGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.10, G:0.31, T:0.44
Consensus pattern (30 bp):
CTGGTAGGCACATTGGGGTGTTTTATTTTA
Found at i:93682660 original size:11 final size:11
Alignment explanation
Indices: 93682644--93682672 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
93682634 CAGAAAAATT
93682644 TATTTTTCTTA
1 TATTTTTCTTA
93682655 TATTTTTCTTA
1 TATTTTTCTTA
93682666 TATTTTT
1 TATTTTT
93682673 GTGGTCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TATTTTTCTTA
Found at i:93688358 original size:55 final size:55
Alignment explanation
Indices: 93688293--93688403 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
93688283 TTCAGAAATG
93688293 ATTTGGGACTAAATCGAGAATATTTAAAACTTTGAGGAAAATGTTAGAAAAATTA
1 ATTTGGGACTAAATCGAGAATATTTAAAACTTTGAGGAAAATGTTAGAAAAATTA
*
93688348 ATTTGGGACTAAATCGATAATATTTAAAACTTTGAGGAAAATGTTAGAAAAATTA
1 ATTTGGGACTAAATCGAGAATATTTAAAACTTTGAGGAAAATGTTAGAAAAATTA
93688403 A
1 A
93688404 CACTACAGGG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (55 bp):
ATTTGGGACTAAATCGAGAATATTTAAAACTTTGAGGAAAATGTTAGAAAAATTA
Found at i:93690893 original size:96 final size:97
Alignment explanation
Indices: 93690729--93690956 Score: 266
Period size: 96 Copynumber: 2.4 Consensus size: 97
93690719 GTTTATGTGT
* * * * **
93690729 GAGCCAGTGTAAGACTG-TGTTTGGAACATGACATCGACATTGTTTTCAGAGCTAGTGTAAGACC
1 GAGCCAGTGTAAGA-TGATGTCTGGAACATGGCATCGACATTGTTATCAGAGCCAAAGTAAGACC
*
93690793 ATGTCTAGGACATGGCATCGGC-CTCAA-TATGC
65 ATGTCTAGGACATGGCATCGGCAC-CAAGTATGA
** *
93690825 GAGCCAGTGTAAGATGATGTCTGGAACATGGCATC-AGCATTGTTATGTGAGCCAAAGTAAGATC
1 GAGCCAGTGTAAGATGATGTCTGGAACATGGCATCGA-CATTGTTATCAGAGCCAAAGTAAGACC
*
93690889 ATGTCTGGGACATGGCATCGGCACCAATGTATGA
65 ATGTCTAGGACATGGCATCGGCACCAA-GTATGA
* **
93690923 GAGCCAATGTAAGACCATGTCTGGAACATGGCAT
1 GAGCCAGTGTAAGATGATGTCTGGAACATGGCAT
93690957 TGGCACCAAT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
95 3 0.03
96 74 0.65
97 1 0.01
98 35 0.31
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (97 bp):
GAGCCAGTGTAAGATGATGTCTGGAACATGGCATCGACATTGTTATCAGAGCCAAAGTAAGACCA
TGTCTAGGACATGGCATCGGCACCAAGTATGA
Found at i:93690942 original size:50 final size:50
Alignment explanation
Indices: 93690784--93691007 Score: 244
Period size: 50 Copynumber: 4.6 Consensus size: 50
93690774 TCAGAGCTAG
* * *
93690784 TGTAAGACCATGTCTAGGACATGGCATCGGC-CTCAA--TATGCGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAC-CAATGTATGAGAGCCAA
** * * * *
93690832 TGTAAGATGATGTCTGGAACATGGCAT---CAGCATTGTTATGTGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCAATG-TATGAGAGCCAA
* *
93690880 AGTAAGATCATGTCTGGGACATGGCATCGGCACCAATGTATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCAATGTATGAGAGCCAA
* * *
93690930 TGTAAGACCATGTCTGGAACATGGCATTGGCACCAATGTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCAATGTATGAGAGCCAA
* *
93690980 TGTAAAACCATGTCTGTGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
93691008 AGTATTTTAC
Statistics
Matches: 146, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
45 3 0.02
48 57 0.39
50 80 0.55
51 6 0.04
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACCAATGTATGAGAGCCAA
Found at i:93697313 original size:50 final size:49
Alignment explanation
Indices: 93697107--93697384 Score: 255
Period size: 48 Copynumber: 5.7 Consensus size: 49
93697097 GGTTATGTGT
* *
93697107 GAGCCAGTGTAAGACCATG-CTTGGAGCATGGCATCGGCACTG-TTATGA
1 GAGCCAGTGTAAGACCATGTCTAGGA-CATGGCATCGGCACCGATTATGA
* * * * * *
93697155 GAGCTAATGTAAGACCATGTCTGGGACATGGCATC-G-ACCTCAATATGC
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACC-GATTATGA
* * * * * ** *
93697203 GAGCCAATGTAAGACGATGT-TTGGAACATAGCATCAGCATTG-TTATGT
1 GAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCACCGATTATGA
**
93697251 GAGCCAGTGTAAGACCATGTCTAGGACATAACATCGGCACCGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT-TATGA
* * *
93697301 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATTGGCACCAATATATGA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT-TATGA
*
93697351 GAGCCAGTGTAAGACCATG-CTCAAGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCT-AGGACATGGCAT
93697385 GTAACAGCCT
Statistics
Matches: 188, Mismatches: 32, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
46 2 0.01
47 4 0.02
48 92 0.49
49 12 0.06
50 78 0.41
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGATTATGA
Found at i:93699587 original size:39 final size:39
Alignment explanation
Indices: 93699526--93699637 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
93699516 GCTCTGATGA
** *
93699526 GCTTCAGTTAGCCTTCAAGCTTCTGGTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
*
93699565 GCTAT-AGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCT-TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
93699604 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACT
93699638 CTAGACTTCA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.02
39 64 0.97
40 1 0.02
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
Found at i:93702255 original size:26 final size:27
Alignment explanation
Indices: 93702226--93702297 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
93702216 CCAATAATAC
93702226 AGCAAAGCTACCAGTAATAAT-AATGT
1 AGCAAAGCTACCAGTAATAATAAATGT
* * *
93702252 AGCATAGCTGCCAGAAACT-ATAAATGT
1 AGCAAAGCTACCAGTAA-TAATAAATGT
* *
93702279 GGCAAAGCCACCAGTAATA
1 AGCAAAGCTACCAGTAATA
93702298 GTGAATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
26 17 0.49
27 18 0.51
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.19
Consensus pattern (27 bp):
AGCAAAGCTACCAGTAATAATAAATGT
Found at i:93702495 original size:27 final size:27
Alignment explanation
Indices: 93702462--93702633 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
93702452 GGGCATAATC
* *
93702462 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* * *
93702489 GTTATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* *
93702516 GTCATTATACCCTACAAGGGTATTACA
1 GTCATTTTACCCTACAAGGGTATTACG
* *
93702543 GTCATTTTACTCTACAAGGGTATTATG
1 GTCATTTTACCCTACAAGGGTATTACG
* * *
93702570 GTCAATTTACCCTAAAAGGGTATTATG
1 GTCATTTTACCCTACAAGGGTATTACG
*
93702597 GTTATTTTACCCTAC-AGAGGTATTACG
1 GTCATTTTACCCTACAAG-GGTATTACG
*
93702624 GTCAATTTAC
1 GTCATTTTAC
93702634 AAACCGGGGC
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 2 0.02
27 121 0.98
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTACG
Found at i:93702660 original size:27 final size:26
Alignment explanation
Indices: 93702630--93702884 Score: 158
Period size: 27 Copynumber: 9.5 Consensus size: 26
93702620 TACGGTCAAT
93702630 TTACAAACCGGGGCTATTTCAGTAATC
1 TTACAAACCGGGG-TATTTCAGTAATC
* * *
93702657 TTACAAATCAGGGTATTTCAGTAATT
1 TTACAAACCGGGGTATTTCAGTAATC
* * * *
93702683 TTACAAGCTAGGGGTATTTCTGTATTC
1 TTACAAAC-CGGGGTATTTCAGTAATC
* * *
93702710 TTACAAACTAGGGGTACTTT-GGTAATT
1 TTACAAAC-CGGGGTA-TTTCAGTAATC
** *
93702737 TTACAAATTGGGGGTATTTC-GTTAATT
1 TTACAAA-CCGGGGTATTTCAG-TAATC
** *
93702764 TTACAAATTGGGGGTATTTCGGTAAT-
1 TTACAAA-CCGGGGTATTTCAGTAATC
* *
93702790 TCTGCAAACCGAGGGTATTTCAATAATC
1 T-TACAAACCG-GGGTATTTCAGTAATC
*
93702818 TTACAAACCAGGGGTATTTCGGTAATC
1 TTACAAACC-GGGGTATTTCAGTAATC
** * * *
93702845 TTA-AAATTGAGAGTATTTCGGTAATT
1 TTACAAACCG-GGGTATTTCAGTAATC
*
93702871 TTACAAACCAGGGT
1 TTACAAACCGGGGT
93702885 CTTAACATCC
Statistics
Matches: 184, Mismatches: 32, Indels: 25
0.76 0.13 0.10
Matches are distributed among these distances:
25 1 0.01
26 47 0.26
27 130 0.71
28 6 0.03
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (26 bp):
TTACAAACCGGGGTATTTCAGTAATC
Found at i:93702741 original size:54 final size:54
Alignment explanation
Indices: 93702615--93702883 Score: 214
Period size: 54 Copynumber: 5.0 Consensus size: 54
93702605 ACCCTACAGA
* *
93702615 GGTATTACGGTCAA-TTTACAAAC-CGGGGCTATTTCAGTAATCTTACAAA-TCA-G
1 GGTATTTCGGT-AATTTTACAAACTAGGGG-TATTTCAGTAATCTTACAAACT-AGG
* * * *
93702668 GGTATTTCAGTAATTTTACAAGCTAGGGGTATTTCTGTATTCTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTCAGTAATCTTACAAACTAGG
* * * * *
93702722 GGTACTTT-GGTAATTTTACAAATTGGGGGTATTTC-GTTAATTTTACAAATTGGG
1 GGTA-TTTCGGTAATTTTACAAACTAGGGGTATTTCAG-TAATCTTACAAACTAGG
* * * * *
93702776 GGTATTTCGGTAATTCTGCAAAC-CGAGGGTATTTCAATAATCTTACAAACCAGG
1 GGTATTTCGGTAATTTTACAAACTAG-GGGTATTTCAGTAATCTTACAAACTAGG
* * * * * *
93702830 GGTATTTCGGTAATCTTA-AAA-TTGAGAGTATTTCGGTAATTTTACAAACCAGG
1 GGTATTTCGGTAATTTTACAAACTAG-GGGTATTTCAGTAATCTTACAAACTAGG
93702883 G
1 G
93702884 TCTTAACATC
Statistics
Matches: 175, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
52 2 0.01
53 71 0.41
54 99 0.57
55 3 0.02
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTCAGTAATCTTACAAACTAGG
Found at i:93702798 original size:81 final size:81
Alignment explanation
Indices: 93702630--93702878 Score: 226
Period size: 81 Copynumber: 3.1 Consensus size: 81
93702620 TACGGTCAAT
* * * ** *
93702630 TTACAAACCG-GGGCTATTTCAGTAATCTTACAAATCA-GGGTATTTCAGTAATTTTACAAGCTA
1 TTACAAACAGAGGG-TATTTCAATAATCTTACAAACCAGGGGTATTTC-GTAATTTTACAAATTG
*
93702693 GGGGTATTTCTGT-ATTC
64 GGGGTATTTCGGTAATTC
** * ***
93702710 TTACAAACTAG-GGGTACTTT-GGTAATTTTACAAATTGGGGGTATTTCGTTAATTTTACAAATT
1 TTACAAAC-AGAGGGTA-TTTCAATAATCTTACAAACCAGGGGTATTTCG-TAATTTTACAAATT
93702773 GGGGGTATTTCGGTAATTC
63 GGGGGTATTTCGGTAATTC
* * * *
93702792 -TGCAAACCGAGGGTATTTCAATAATCTTACAAACCAGGGGTATTTCGGTAATCTTA-AAATTGA
1 TTACAAACAGAGGGTATTTCAATAATCTTACAAACCAGGGGTATTTC-GTAATTTTACAAATTGG
*
93702855 GAGTATTTCGGTAATT-
65 GGGTATTTCGGTAATTC
93702871 TTACAAAC
1 TTACAAAC
93702879 CAGGGTCTTA
Statistics
Matches: 139, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
80 55 0.40
81 79 0.57
82 5 0.04
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (81 bp):
TTACAAACAGAGGGTATTTCAATAATCTTACAAACCAGGGGTATTTCGTAATTTTACAAATTGGG
GGTATTTCGGTAATTC
Found at i:93706544 original size:28 final size:28
Alignment explanation
Indices: 93706512--93706612 Score: 118
Period size: 28 Copynumber: 3.6 Consensus size: 28
93706502 TAAATGTTAT
93706512 TTGGGCCTAGT-GGCCATATGAATGTGA
1 TTGGGCCTAGTGGGCCATATGAATGTGA
* *
93706539 TTTGGGCCTAATGGGCCATATAAATGTGA
1 -TTGGGCCTAGTGGGCCATATGAATGTGA
* * *
93706568 ATGGG-CT-GATGGGCCATATGAAAGAGA
1 TTGGGCCTAG-TGGGCCATATGAATGTGA
93706595 TTGGGCCTAGTGGGCCAT
1 TTGGGCCTAGTGGGCCAT
93706613 TTATAGGTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
27 21 0.34
28 24 0.39
29 16 0.26
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.27
Consensus pattern (28 bp):
TTGGGCCTAGTGGGCCATATGAATGTGA
Found at i:93706599 original size:27 final size:27
Alignment explanation
Indices: 93706523--93706612 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
93706513 TGGGCCTAGT
*
93706523 GGCCATATGAATGTGATTTGGGCCTAATG
1 GGCCATATGAAAGTGA-TTGGG-CTAATG
* *
93706552 GGCCATAT-AAATGTGAATGGGCTGATG
1 GGCCATATGAAA-GTGATTGGGCTAATG
* *
93706579 GGCCATATGAAAGAGATTGGGCCTAGTG
1 GGCCATATGAAAGTGATTGGG-CTAATG
93706607 GGCCAT
1 GGCCAT
93706613 TTATAGGTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
27 20 0.39
28 19 0.37
29 12 0.24
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.26
Consensus pattern (27 bp):
GGCCATATGAAAGTGATTGGGCTAATG
Found at i:93712607 original size:78 final size:79
Alignment explanation
Indices: 93712450--93712623 Score: 198
Period size: 78 Copynumber: 2.2 Consensus size: 79
93712440 GCTACTCGTT
* * *
93712450 CAAATGCCTTCGGGACAT-GCCGGTTATAGTAATTCGAACAAATGCCTTCGGGACTCAACCCGGA
1 CAAATGCCTTCGGGACTTAACCGGTTATAGTAACTCGAACAAATGCCTTCGGGACTCAACCCGGA
* *
93712514 TTTAGTAACTCGCA
66 TATAGTAACTAGCA
* * *
93712528 CAAATGCCTTC-GGACTTAACCGGATT-TAGTAACTCGCACAAATGCCTTC-GGA-TCTTAGCCG
1 CAAATGCCTTCGGGACTTAACCGG-TTATAGTAACTCGAACAAATGCCTTCGGGACTC-AACCCG
*
93712589 GATATAGTCACTTAGCA
64 GATATAGTAAC-TAGCA
93712606 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
93712624 GCCCGGACAT
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
76 2 0.02
77 27 0.33
78 51 0.62
79 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCGGTTATAGTAACTCGAACAAATGCCTTCGGGACTCAACCCGGA
TATAGTAACTAGCA
Found at i:93712614 original size:39 final size:38
Alignment explanation
Indices: 93712450--93712626 Score: 169
Period size: 38 Copynumber: 4.6 Consensus size: 38
93712440 GCTACTCGTT
* * * * *
93712450 CAAATGCCTTCGGGACAT-GCCGGTTATAGTAATTCGAA
1 CAAATGCCTTC-GGACTTAGCCGGATATAGTAACTAGCA
* * * *
93712488 CAAATGCCTTCGGGACTCAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACT-TAGCCGGATATAGTAACTAGCA
* * *
93712528 CAAATGCCTTCGGACTTAACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCGGATATAGTAACTAGCA
*
93712566 CAAATGCCTTCGGATCTTAGCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCGGATATAGTAAC-TAGCA
93712606 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTC-GGACTTAGCC
93712627 CGGACATCAT
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 50 0.41
39 34 0.28
40 37 0.31
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAGCCGGATATAGTAACTAGCA
Found at i:93719703 original size:40 final size:40
Alignment explanation
Indices: 93719659--93719844 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
93719649 GCTACTCGTT
* ** * *
93719659 CAAATGCCTTCGGGACATGGCCCGG-TTATAGTAATTCGAA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
93719699 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
93719739 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * *
93719779 GAAATGCCTTC-TGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
93719820 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
93719845 CATCATTCGA
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 11 0.09
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:93721699 original size:13 final size:13
Alignment explanation
Indices: 93721677--93721712 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
93721667 ATTTTGAGGC
*
93721677 ACACGGCCGTGGG
1 ACACGCCCGTGGG
93721690 ACACGCCCGT-GG
1 ACACGCCCGTGGG
93721702 ACACGCCCGTG
1 ACACGCCCGTG
93721713 TGCCCTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.17, C:0.39, G:0.36, T:0.08
Consensus pattern (13 bp):
ACACGCCCGTGGG
Found at i:93723586 original size:39 final size:39
Alignment explanation
Indices: 93723496--93723711 Score: 281
Period size: 39 Copynumber: 5.5 Consensus size: 39
93723486 ATAAAGCATG
* * **
93723496 CGGGACTTTAAGCCCGGATATAATACCAGGAC-AAACCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
93723536 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
93723575 CGGGATTTAGCCCGGGTATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
93723614 CGGGACTTAGCTCGGTTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
93723653 TGGGACTTAGCCCGGATATAACACTAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
93723692 CGAGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
93723712 TATCTCACAC
Statistics
Matches: 156, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
38 20 0.13
39 130 0.83
40 6 0.04
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:93731793 original size:28 final size:28
Alignment explanation
Indices: 93731761--93731814 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
93731751 CAGAGTATAA
93731761 GTGGGCCAAAGCCCAATACAGTAACAAG
1 GTGGGCCAAAGCCCAATACAGTAACAAG
* * * *
93731789 GTGGGCCTAAGTCCATTGCAGTAACA
1 GTGGGCCAAAGCCCAATACAGTAACA
93731815 GTATCAGTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.26, T:0.17
Consensus pattern (28 bp):
GTGGGCCAAAGCCCAATACAGTAACAAG
Found at i:93732203 original size:27 final size:27
Alignment explanation
Indices: 93732179--93732356 Score: 212
Period size: 27 Copynumber: 6.6 Consensus size: 27
93732169 GGGCATTATC
*
93732179 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
93732206 GTTATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
93732233 GTCATTATACCTTATAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
93732260 GTCATTTTACCCTACAAGGATATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
93732287 GTCATTTTACCCTAAAGGGTTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
93732314 GTCATTTTACACTACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
93732341 GTCATTTTATCCTACA
1 GTCATTTTACCCTACA
93732357 AGATTATTAC
Statistics
Matches: 125, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:93732374 original size:54 final size:54
Alignment explanation
Indices: 93732227--93732375 Score: 149
Period size: 54 Copynumber: 2.8 Consensus size: 54
93732217 CTATAGGGGC
* * * ** * *
93732227 ATTACGGTCATTATACCTTATAGGGGTATTAC-AGTCATTTTACCCTACAAGGAT
1 ATTACGGTCATTTTACCCTAAAGGATTATTACGA-CCATTTTACACTACAAGGAT
* * ** *
93732281 ATTATGGTCATTTTACCCTAAAGGGTTATTACGGTCATTTTACACTACAAGGGT
1 ATTACGGTCATTTTACCCTAAAGGATTATTACGACCATTTTACACTACAAGGAT
*
93732335 ATTACGGTCATTTTATCCTACAA-GATTATTACGACCATTTT
1 ATTACGGTCATTTTACCCTA-AAGGATTATTACGACCATTTT
93732376 GCAAACCGGG
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
54 78 0.98
55 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (54 bp):
ATTACGGTCATTTTACCCTAAAGGATTATTACGACCATTTTACACTACAAGGAT
Found at i:93732414 original size:27 final size:26
Alignment explanation
Indices: 93732384--93732837 Score: 262
Period size: 27 Copynumber: 17.0 Consensus size: 26
93732374 TTGCAAACCG
* *
93732384 GGGGTATTTCAACAATCTTATAAATAA
1 GGGGTATTTCAATAATCTTACAAAT-A
* * *
93732411 GGGGTATTTCGATAATTTTACAAATTG
1 GGGGTATTTCAATAATCTTACAAA-TA
* *
93732438 GGGGTATTTCGATAATCTTACAAATC
1 GGGGTATTTCAATAATCTTACAAATA
* *
93732464 GGGGTATTTCAATAATTTTACAAATC
1 GGGGTATTTCAATAATCTTACAAATA
* * * * *
93732490 GAGGTTATTTCGATAATTTTATAAACA
1 G-GGGTATTTCAATAATCTTACAAATA
* * * *
93732517 GGGGGTATGTCGATAATCTTAGAAACTG
1 -GGGGTATTTCAATAATCTTACAAA-TA
** *
93732545 GGGGTATTTCGGTAAT-TTACAAACCA
1 GGGGTATTTCAATAATCTTACAAA-TA
** ** *
93732571 AAGGTATTTCGTTAATTTTACAAACTA
1 GGGGTATTTCAATAATCTTACAAA-TA
* * * * **
93732598 AGGGTATTTCGATAATTTTATAAACCG
1 GGGGTATTTCAATAATCTTACAAA-TA
* **
93732625 GGGGTATTTCAAAAATCTTACAGACCA
1 GGGGTATTTCAATAATCTTACA-AATA
* **
93732652 GGGGTATTTCAATAATGTTACAAACCG
1 GGGGTATTTCAATAATCTTACAAA-TA
* * *
93732679 GGGGTATTTTAATAATGTTACAAATC
1 GGGGTATTTCAATAATCTTACAAATA
* * *
93732705 GAGGGTATTTCGATAATGTTACAAATTG
1 G-GGGTATTTCAATAATCTTACAAA-TA
* * * *
93732733 GGGGTATTTCGATAATTTTATGAACTA
1 GGGGTATTTCAATAATCTTA-CAAATA
* * *
93732760 GGGGTATTTCGATAATTTTACAAATC
1 GGGGTATTTCAATAATCTTACAAATA
* * *
93732786 GGGGTATTTCGATAATCTTTCAAACTC
1 GGGGTATTTCAATAATCTTACAAA-TA
* * *
93732813 TGGGTATTTCAGTAATTTTACAAAT
1 GGGGTATTTCAATAATCTTACAAAT
93732838 TGAGGTCTTA
Statistics
Matches: 351, Mismatches: 65, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
26 74 0.21
27 270 0.77
28 7 0.02
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (26 bp):
GGGGTATTTCAATAATCTTACAAATA
Found at i:93732441 original size:54 final size:54
Alignment explanation
Indices: 93732371--93732836 Score: 385
Period size: 54 Copynumber: 8.7 Consensus size: 54
93732361 TATTACGACC
* * * * * * * *
93732371 ATTTTGCAAACCGGGGGTATTTCAACAATCTTATAAATAAGGGGTATTTCGATA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACAGGGGGTATTTCGATA
* * *
93732425 ATTTTACAAATTGGGGGTATTTCGATAATCTTACAAATC--GGGGTATTTCAATA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAA-CAGGGGGTATTTCGATA
* * * *
93732478 ATTTTACAAA-TCGAGGTTATTTCGATAATTTTATAAACAGGGGGTATGTCGATA
1 ATTTTACAAACT-GGGGGTATTTCGATAATTTTACAAACAGGGGGTATTTCGATA
* * * ** *
93732532 ATCTTAGAAACTGGGGGTATTTCGGTAA-TTTACAAACCA-AAGGTATTTCGTTA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAA-CAGGGGGTATTTCGATA
** * * * *
93732585 ATTTTACAAACTAAGGGTATTTCGATAATTTTATAAACCGGGGGTATTTCAAAA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACAGGGGGTATTTCGATA
* * ** * * * **
93732639 ATCTTACAGACCAGGGGTATTTCAATAATGTTACAAACCGGGGGTATTTTAATA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACAGGGGGTATTTCGATA
* * * **
93732693 ATGTTACAAA-TCGAGGGTATTTCGATAATGTTACAAATTGGGGGTATTTCGATA
1 ATTTTACAAACT-GGGGGTATTTCGATAATTTTACAAACAGGGGGTATTTCGATA
** *
93732747 ATTTTATGAACTAGGGGTATTTCGATAATTTTACAAATC--GGGGTATTTCGATA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAA-CAGGGGGTATTTCGATA
**
93732800 ATCTTT-CAAACTCTGGGTATTTC-AGTAATTTTACAAA
1 AT-TTTACAAACTGGGGGTATTTCGA-TAATTTTACAAA
93732837 TTGAGGTCTT
Statistics
Matches: 333, Mismatches: 66, Indels: 27
0.78 0.15 0.06
Matches are distributed among these distances:
52 3 0.01
53 126 0.38
54 202 0.61
55 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.36
Consensus pattern (54 bp):
ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACAGGGGGTATTTCGATA
Found at i:93732522 original size:107 final size:107
Alignment explanation
Indices: 93732371--93732832 Score: 450
Period size: 107 Copynumber: 4.3 Consensus size: 107
93732361 TATTACGACC
* * * * * * * * * *
93732371 ATTTTGCAAACCGGGGGTATTTCAACAATCTTATAAATAAGGGGTATTTCGATAATTTTACAAAT
1 ATTTTACAAATCGAGGGTATTTCGATAATTTTATAAACAGGGGGTATTTCGATAATCTTACAAAC
* *
93732436 TGGGGGTATTTCGATAATCTTACAAATC-GGGGTATTTCAATA
66 TAGGGGTATTTCGATAAT-TTACAAACCAGGGGTATTTCAATA
* * *
93732478 ATTTTACAAATCGAGGTTATTTCGATAATTTTATAAACAGGGGGTATGTCGATAATCTTAGAAAC
1 ATTTTACAAATCGAGGGTATTTCGATAATTTTATAAACAGGGGGTATTTCGATAATCTTACAAAC
* * ** **
93732543 TGGGGGTATTTCGGTAATTTACAAACCAAAGGTATTTCGTTA
66 TAGGGGTATTTCGATAATTTACAAACCAGGGGTATTTCAATA
* * * * *
93732585 ATTTTACAAA-CTAAGGGTATTTCGATAATTTTATAAACCGGGGGTATTTCAAAAATCTTACAGA
1 ATTTTACAAATC-GAGGGTATTTCGATAATTTTATAAACAGGGGGTATTTCGATAATCTTACAAA
* * * *
93732649 CCAGGGGTATTTCAATAATGTTACAAACCGGGGGTATTTTAATA
65 CTAGGGGTATTTCGATAAT-TTACAAACCAGGGGTATTTCAATA
* * * ** * **
93732693 ATGTTACAAATCGAGGGTATTTCGATAATGTTACAAATTGGGGGTATTTCGATAATTTTATGAAC
1 ATTTTACAAATCGAGGGTATTTCGATAATTTTATAAACAGGGGGTATTTCGATAATCTTACAAAC
* *
93732758 TAGGGGTATTTCGATAATTTTACAAATC-GGGGTATTTCGATA
66 TAGGGGTATTTCGATAA-TTTACAAACCAGGGGTATTTCAATA
*
93732800 ATCTTT-CAAACTC-TGGGTATTTC-AGTAATTTTA
1 AT-TTTACAAA-TCGAGGGTATTTCGA-TAATTTTA
93732833 CAAATTGAGG
Statistics
Matches: 290, Mismatches: 57, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
106 10 0.03
107 182 0.63
108 96 0.33
109 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (107 bp):
ATTTTACAAATCGAGGGTATTTCGATAATTTTATAAACAGGGGGTATTTCGATAATCTTACAAAC
TAGGGGTATTTCGATAATTTACAAACCAGGGGTATTTCAATA
Found at i:93733085 original size:18 final size:20
Alignment explanation
Indices: 93733056--93733093 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
93733046 CATGTAGGAC
93733056 CACAAGCCCACTT-GGCCCA
1 CACAAGCCCACTTCGGCCCA
93733075 CACAA-CCCACTTCGGCCCA
1 CACAAGCCCACTTCGGCCCA
93733094 ACGAGGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.26, C:0.50, G:0.13, T:0.11
Consensus pattern (20 bp):
CACAAGCCCACTTCGGCCCA
Found at i:93737766 original size:88 final size:88
Alignment explanation
Indices: 93737665--93737851 Score: 338
Period size: 88 Copynumber: 2.1 Consensus size: 88
93737655 ATATGTGGGA
* * *
93737665 AGCTCACAAAAAGTGTGCTAACATGTGGTCGAAACCATTCCTTTTCCTTTTCTTTTACATTGATG
1 AGCTCACACAAAGTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
93737730 CTCACTCGAGCTACAAATGGGTC
66 CTCACTCGAGCTACAAATGGGTC
93737753 AGCTCACACAAAGTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
1 AGCTCACACAAAGTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
*
93737818 CTCACTTGAGCTACAAATGGGTC
66 CTCACTCGAGCTACAAATGGGTC
93737841 AGCTCACACAA
1 AGCTCACACAA
93737852 GCTGACGGTC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 95 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (88 bp):
AGCTCACACAAAGTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
CTCACTCGAGCTACAAATGGGTC
Found at i:93738301 original size:16 final size:17
Alignment explanation
Indices: 93738268--93738301 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
93738258 CAATTCAATC
93738268 CAAAATTCATACTTTTG
1 CAAAATTCATACTTTTG
*
93738285 CAAAATT-ATAGTTTTG
1 CAAAATTCATACTTTTG
93738301 C
1 C
93738302 CCCTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (17 bp):
CAAAATTCATACTTTTG
Found at i:93751059 original size:49 final size:48
Alignment explanation
Indices: 93750987--93751162 Score: 210
Period size: 49 Copynumber: 3.5 Consensus size: 48
93750977 TGAGGTCAGG
93750987 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTT-CA
* * * * *
93751036 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTGGTTCA
* **
93751085 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG-TCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTTCA
93751135 CGTGTGTAGTACTAAGTGCAGGCTACTA
1 --TGTGTAGTACTAAGTGCAGGCTACTA
93751163 TGCGTACTAG
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
49 39 0.35
50 37 0.33
51 35 0.32
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTCA
Found at i:93751208 original size:101 final size:100
Alignment explanation
Indices: 93750986--93751175 Score: 263
Period size: 101 Copynumber: 1.9 Consensus size: 100
93750976 GTGAGGTCAG
* * **
93750986 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCATGTGTAGTACTAAGT
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
*
93751051 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGCGTACCAGATAACTTCGATCAC
* * * ** *
93751086 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAG
*
93751151 TGCAGGCTACTATGCGTACTAGATA
65 TGCAGGCTACTATGCGTACCAGATA
93751176 GCCTTGTCTA
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
100 40 0.49
101 41 0.51
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (100 bp):
GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCAGATAACTTCGATCAC
Found at i:93760827 original size:46 final size:46
Alignment explanation
Indices: 93760760--93761079 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
93760750 AGTGTGCTCT
*
93760760 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
93760806 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
93760852 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATGCCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
93760898 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAAGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
93760944 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
93760990 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
93761036 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
93761080 TCATGTCAAA
Statistics
Matches: 256, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 255 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:93762460 original size:29 final size:29
Alignment explanation
Indices: 93762389--93762534 Score: 136
Period size: 29 Copynumber: 5.1 Consensus size: 29
93762379 AACACCTACA
* *
93762389 CACATGCATATGACCCACTT-GGCCC--AT
1 CACATTCATATGGCCCA-TTAGGCCCAAAT
* * *
93762416 CTCATTCATATAGCCCATTAGGCCCAATT
1 CACATTCATATGGCCCATTAGGCCCAAAT
* *
93762445 CACATTCATATGGCCCATCAGGCCCAATT
1 CACATTCATATGGCCCATTAGGCCCAAAT
** * *
93762474 CATGTTCATATTGCCTATTAGGCCCAAAT
1 CACATTCATATGGCCCATTAGGCCCAAAT
* * *
93762503 CACCTTTATATGGCCCGTTAGGCCCAAAT
1 CACATTCATATGGCCCATTAGGCCCAAAT
93762532 CAC
1 CAC
93762535 CTTATATTCA
Statistics
Matches: 96, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 18 0.19
29 76 0.79
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (29 bp):
CACATTCATATGGCCCATTAGGCCCAAAT
Found at i:93762499 original size:58 final size:58
Alignment explanation
Indices: 93762420--93762529 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 58
93762410 GCCCATCTCA
*
93762420 TTCATATAGCCCATTAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATTCATG
1 TTCATATAGCCCATTAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCATG
* * * * * *
93762478 TTCATATTGCCTATTAGGCCCAAATCACCTTTATATGGCCCGTTAGGCCCAA
1 TTCATATAGCCCATTAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAA
93762530 ATCACCTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 45 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (58 bp):
TTCATATAGCCCATTAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCATG
Found at i:93762535 original size:29 final size:29
Alignment explanation
Indices: 93762420--93762541 Score: 138
Period size: 29 Copynumber: 4.2 Consensus size: 29
93762410 GCCCATCTCA
* * *
93762420 TTCATATAGCCCATTAGGCCCAATTCACA
1 TTCATATGGCCCATTAGGCCCAAATCACC
* * **
93762449 TTCATATGGCCCATCAGGCCCAATTCATG
1 TTCATATGGCCCATTAGGCCCAAATCACC
* *
93762478 TTCATATTGCCTATTAGGCCCAAATCACC
1 TTCATATGGCCCATTAGGCCCAAATCACC
* *
93762507 TTTATATGGCCCGTTAGGCCCAAATCACC
1 TTCATATGGCCCATTAGGCCCAAATCACC
93762536 TT-ATAT
1 TTCATAT
93762542 TCATGCTCAC
Statistics
Matches: 79, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 4 0.05
29 75 0.95
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACC
Found at i:93762778 original size:16 final size:16
Alignment explanation
Indices: 93762753--93762799 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
93762743 GCAGCCAAAC
* *
93762753 TTTTGGCTTTTTGGCA
1 TTTTGACTTTTCGGCA
93762769 TTTTGACTTTTCGGCA
1 TTTTGACTTTTCGGCA
93762785 TTTT-AGCTTTTCGGC
1 TTTTGA-CTTTTCGGC
93762800 TTCTTCCGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 1 0.04
16 27 0.96
ACGTcount: A:0.09, C:0.17, G:0.21, T:0.53
Consensus pattern (16 bp):
TTTTGACTTTTCGGCA
Found at i:93765722 original size:17 final size:18
Alignment explanation
Indices: 93765700--93765733 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93765690 TACATTGAAG
93765700 TGTTTT-AATGAAAACCA
1 TGTTTTCAATGAAAACCA
*
93765717 TGTTTTCATTGAAAACC
1 TGTTTTCAATGAAAACC
93765734 CTTCTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
TGTTTTCAATGAAAACCA
Found at i:93766828 original size:29 final size:29
Alignment explanation
Indices: 93766792--93766879 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
93766782 TGGCCCATCT
*
93766792 CATTCATATAGCCCATCAGGCCTAATTCA
1 CATTCATATAGCCCATCAGGCCCAATTCA
*
93766821 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATAGCCCATCAGGCCCAATTCA
* * * * *
93766850 TATTCATATGGCCTATTAGGCCCAAATCA
1 CATTCATATAGCCCATCAGGCCCAATTCA
93766879 C
1 C
93766880 CTTTATATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.27
Consensus pattern (29 bp):
CATTCATATAGCCCATCAGGCCCAATTCA
Found at i:93766887 original size:29 final size:29
Alignment explanation
Indices: 93766797--93766915 Score: 105
Period size: 29 Copynumber: 4.1 Consensus size: 29
93766787 CATCTCATTC
* * * * * *
93766797 ATATAGCCCATCAGGCCTAATTCACATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* * ** *
93766826 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
*
93766855 ATATGGCCTATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
93766884 ATATGTCCCGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
93766912 ATAT
1 ATAT
93766916 TCATGCTCAT
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 6 0.08
29 72 0.92
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:93766888 original size:58 final size:58
Alignment explanation
Indices: 93766793--93766903 Score: 132
Period size: 58 Copynumber: 1.9 Consensus size: 58
93766783 GGCCCATCTC
* *
93766793 ATTCATATAGCCCATCAGGCCTAATTCACATTCATATGGCCCATCAGGCCCAATTCAT
1 ATTCATATAGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCAT
* * * * * * * *
93766851 ATTCATATGGCCTATTAGGCCCAAATCACCTTTATATGTCCCGTTAGGCCCAA
1 ATTCATATAGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAA
93766904 ATCACCTTAT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 43 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.29
Consensus pattern (58 bp):
ATTCATATAGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCAT
Found at i:93771130 original size:73 final size:73
Alignment explanation
Indices: 93771045--93771195 Score: 230
Period size: 73 Copynumber: 2.1 Consensus size: 73
93771035 ATATAAAGAT
** * * *
93771045 AATAATTAGTGAATATTTATTATTTTTCTGTTCAAATATGTCTCTTACTCCTCTTATTAGCATTC
1 AATAATTAGTGAATATTTATTATTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
93771110 TTACTAAG
66 TTACTAAG
* *
93771118 AATAATTAGTGAATCTTTATTGTTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
1 AATAATTAGTGAATATTTATTATTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
*
93771183 TTACTGAG
66 TTACTAAG
93771191 AATAA
1 AATAA
93771196 ATTTAACGAG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (73 bp):
AATAATTAGTGAATATTTATTATTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
TTACTAAG
Found at i:93771821 original size:17 final size:18
Alignment explanation
Indices: 93771786--93771820 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93771776 CTCCCATCCT
* *
93771786 CTAAGGGGAAGCAGAAAA
1 CTAAGGGAAAGAAGAAAA
93771804 CTAAGGGAAAGAAGAAA
1 CTAAGGGAAAGAAGAAA
93771821 CCGACTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.09, G:0.31, T:0.06
Consensus pattern (18 bp):
CTAAGGGAAAGAAGAAAA
Found at i:93772677 original size:36 final size:36
Alignment explanation
Indices: 93772630--93772703 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
93772620 TTAAGATTAT
**
93772630 TACGTGACTTTCATTGATGATTATTCTTGATAATAA
1 TACGTGACTTTCATCAATGATTATTCTTGATAATAA
*
93772666 TACGTGACTTTCATCAATGATTATTCTTGATAGTAA
1 TACGTGACTTTCATCAATGATTATTCTTGATAATAA
93772702 TA
1 TA
93772704 TGTTTATCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (36 bp):
TACGTGACTTTCATCAATGATTATTCTTGATAATAA
Found at i:93786651 original size:40 final size:39
Alignment explanation
Indices: 93786585--93786745 Score: 146
Period size: 40 Copynumber: 4.1 Consensus size: 39
93786575 GGATTTAACT
** *
93786585 GGATATAAC-ACAAGCACAATTGCCTTCGGGTCTTAACCC
1 GGATATAACAACTCGCAC-ATTGCCTTCGGGTCTTAGCCC
* *** *
93786624 GGATTTGGTAACTTGCACATTTGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTCGCACA-TTGCCTTCGGGTCTTAGCCC
*
93786664 GGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTCGCAC-ATTGCCTTCGGGTCTTAGCCC
* * * *
93786704 GGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCC
1 GGATATAA-CAACTCGCA-CATTGCCTTCGGGTCTTAGCCC
93786744 GG
1 GG
93786746 GTATCATTCA
Statistics
Matches: 101, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 6 0.06
40 93 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
GGATATAACAACTCGCACATTGCCTTCGGGTCTTAGCCC
Found at i:93787439 original size:32 final size:32
Alignment explanation
Indices: 93787398--93787462 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
93787388 AGGCCAATTA
93787398 TACACTTAATACCACACAAAAACAGCATACAT
1 TACACTTAATACCACACAAAAACAGCATACAT
93787430 TACACTTAATACCACACAAAAACAGCATACAT
1 TACACTTAATACCACACAAAAACAGCATACAT
93787462 T
1 T
93787463 TTACTAACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.49, C:0.28, G:0.03, T:0.20
Consensus pattern (32 bp):
TACACTTAATACCACACAAAAACAGCATACAT
Found at i:93789294 original size:45 final size:45
Alignment explanation
Indices: 93789244--93789333 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
93789234 TGTGAAGAAG
93789244 AAAAAGCAATAGCTACCAAAATGGAGAACAAAATGAGAACAGCTT
1 AAAAAGCAATAGCTACCAAAATGGAGAACAAAATGAGAACAGCTT
93789289 AAAAAGCAATAGCTACCAAAATGGAGAACAAAATGAGAACAGCTT
1 AAAAAGCAATAGCTACCAAAATGGAGAACAAAATGAGAACAGCTT
93789334 TCGGCACTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.53, C:0.16, G:0.18, T:0.13
Consensus pattern (45 bp):
AAAAAGCAATAGCTACCAAAATGGAGAACAAAATGAGAACAGCTT
Found at i:93801621 original size:47 final size:47
Alignment explanation
Indices: 93801468--93801677 Score: 165
Period size: 47 Copynumber: 4.3 Consensus size: 47
93801458 CATAGTAAAA
* * * *
93801468 CTATGGTCTTACATA-TAGTCACATATTACACACTGAAGCCATAGCTCAG
1 CTATGGTCTTATACAGTAG-CACATA-T-CACACTGATGCCATAGCCCAG
* * * * * *
93801517 CCATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAAA
1 CTATGGTCTTATACAGTAGCACATATCACACTGATGCCATAGCCC-AG
*
93801564 C-ATGGTCTTATACAGTAGCACATATCACACTGATGCCATATCCCAG
1 CTATGGTCTTATACAGTAGCACATATCACACTGATGCCATAGCCCAG
** * *
93801610 CTATGGTCTTATACGAAAATCACATGATCACATCACACCGATGCCATAGCCCAG
1 CTATGGTCTTATAC-AGTAGCAC---AT---ATCACACTGATGCCATAGCCCAG
93801664 CTATGGTCTTATAC
1 CTATGGTCTTATAC
93801678 GGATCACATG
Statistics
Matches: 133, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
46 29 0.22
47 43 0.32
48 11 0.08
49 13 0.10
51 2 0.02
54 35 0.26
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (47 bp):
CTATGGTCTTATACAGTAGCACATATCACACTGATGCCATAGCCCAG
Found at i:93801632 original size:95 final size:97
Alignment explanation
Indices: 93801465--93801641 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 97
93801455 TGCCATAGTA
* *
93801465 AAACTATGGTCTTACATATAGTCACATATTACACACTGAAGCCATAGCTCAGCCATGGTCTTACA
1 AAACTATGGTCTTACACATAGTCACATATTACACACTGAAGCCATAGCCCAGCCATGGTCTTACA
*
93801530 CGGATCACAT-ATCACACTGATGCCATATCCC
66 CGAATCACATGATCACACTGATGCCATATCCC
* * * * *
93801561 AAAC-ATGGTCTTATACAGTAG-CACATA-T-CACACTGATGCCATATCCCAGCTATGGTCTTAT
1 AAACTATGGTCTTACACA-TAGTCACATATTACACACTGAAGCCATAGCCCAGCCATGGTCTTAC
93801622 ACGAAAATCACATGATCACA
65 ACG--AATCACATGATCACA
93801642 TCACACCGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
93 31 0.45
94 1 0.01
95 24 0.35
96 13 0.19
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (97 bp):
AAACTATGGTCTTACACATAGTCACATATTACACACTGAAGCCATAGCCCAGCCATGGTCTTACA
CGAATCACATGATCACACTGATGCCATATCCC
Found at i:93801645 original size:54 final size:51
Alignment explanation
Indices: 93801587--93801693 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 51
93801577 AGTAGCACAT
* *
93801587 ATCACACTGATGCCATATCCCAGCTATGGTCTTATACGAAAATCACATGATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACG--AATCACATG-TCAC
*
93801641 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGATCACATGTCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGAATCACATGTCAC
93801692 AT
1 AT
93801694 GTTGTCATGA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
51 6 0.12
52 8 0.16
54 36 0.72
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (51 bp):
ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGAATCACATGTCAC
Found at i:93804347 original size:72 final size:71
Alignment explanation
Indices: 93804105--93804701 Score: 532
Period size: 72 Copynumber: 8.4 Consensus size: 71
93804095 TCAATGAAAA
* * * * * * *
93804105 CCCAAATAGTTAACAATAGTTAAAAGCTCCCAACTGTCATTATTAAGGCTCGTAAGTTCAATACT
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAACT
93804170 ACAACC
66 ACAACC
* * * * *
93804176 CCCAAATAATTAGCGAGAGTTAAAAGCTCCTAGTTGTTATCATTAAGGCTCGTAGGTTTAAAACT
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAACT
*
93804241 GCAACC
66 ACAACC
* * * *
93804247 CCCAAATAGTTAGCGAGAGATAAAAGCTCCCAGCTATCATAATTAAGGCTTGTAGGTTTAAAACT
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAACT
** *
93804312 GTATCC
66 ACAACC
* * * *
93804318 CCTCAAATAGTTAGTGAGAGTTAAAAGCTCCCAACTGTCATCATTAAGGCTCATAGGTTTAAAAC
1 CC-CAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAAC
* * *
93804383 CATAGCC
65 TACAACC
* * * * * **
93804390 TCCAAAATAGTTAGCGAGATTTAAAAGCTCCCAACTGTCATTATTAAGGCTCGCAAGAATAAAAC
1 -CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAAC
*
93804455 TACAGCCC
65 TACA-ACC
* * * *
93804463 CCCAAATAGTTAACGAGAGTTAAAAGCTTCCAGTTGTCATTATTAAGGCTCGTAGGTTTACAACT
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAACT
* * *
93804528 GCATCAT
66 ACAAC-C
* * * * * * * * * *
93804535 CTCAAATAGTTAGTGAGAGTTAAAAGCTCTCAGTTGTC-TTATTAAGGCTTGCAAGTTCAATACC
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAACT
* *
93804599 ATAGCCC
66 ACA-ACC
* * * * * * * * *
93804606 CCCAAACAGTTGGCAAGATTTAAAAGCTCCTAACTATCATTATTAAGACTCATAGGTTTAAAA-T
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAACT
93804670 CACAACC
66 -ACAACC
* * *
93804677 CCCAAATAGTCAACGATAGTTAAAA
1 CCCAAATAGTTAGCGAGAGTTAAAA
93804702 ACCCTCAGAT
Statistics
Matches: 416, Mismatches: 103, Indels: 14
0.78 0.19 0.03
Matches are distributed among these distances:
71 189 0.45
72 223 0.54
73 4 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (71 bp):
CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTATTAAGGCTCGTAGGTTTAAAACT
ACAACC
Found at i:93805119 original size:27 final size:27
Alignment explanation
Indices: 93805080--93805138 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
93805070 CCATATTCTT
** *
93805080 ATTCTCAGTAGGAAGGGTCACATTATC
1 ATTCTCAACAGGAAGGGCCACATTATC
* * *
93805107 ATTCTCAACAGGAGGGGCCATATTGTC
1 ATTCTCAACAGGAAGGGCCACATTATC
93805134 ATTCT
1 ATTCT
93805139 TGATAAGAGG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (27 bp):
ATTCTCAACAGGAAGGGCCACATTATC
Found at i:93808509 original size:40 final size:39
Alignment explanation
Indices: 93808381--93808511 Score: 120
Period size: 40 Copynumber: 3.3 Consensus size: 39
93808371 TATGCTGGAA
* * * * *
93808381 ATTATATCCGGGTTGAGACCCAAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTG
** * * *
93808421 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GGG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTG
*
93808459 ACATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTG
1 --ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-GTG
93808501 ATTATATCCGG
1 ATTATATCCGG
93808512 TTATATTCCG
Statistics
Matches: 70, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 2 0.03
40 66 0.94
42 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTG
Found at i:93814044 original size:18 final size:19
Alignment explanation
Indices: 93814018--93814060 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
93814008 TTTCCCAAAA
93814018 TAAATATT-ATTTACTAAAT
1 TAAATATTAATTTACT-AAT
*
93814037 TAAA-ATTAATTTTCTAAT
1 TAAATATTAATTTACTAAT
93814055 TAAATA
1 TAAATA
93814061 ATTTTCTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
TAAATATTAATTTACTAAT
Found at i:93818147 original size:28 final size:28
Alignment explanation
Indices: 93818114--93818224 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
93818104 AAGCGTTTTG
93818114 GTGGCTCTGCCACAAATATCTGTTTCTA
1 GTGGCTCTGCCACAAATATCTGTTTCTA
* *
93818142 GTGGCTCTGCCACAAATGTCTGTTTCTG
1 GTGGCTCTGCCACAAATATCTGTTTCTA
* * * * *
93818170 GTGGCCCTACCACAATTATCTGTATCTG
1 GTGGCTCTGCCACAAATATCTGTTTCTA
* *
93818198 GTGACTCTGTCAC-AATATCTG-TTCTA
1 GTGGCTCTGCCACAAATATCTGTTTCTA
93818224 G
1 G
93818225 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
26 4 0.06
27 7 0.10
28 58 0.84
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (28 bp):
GTGGCTCTGCCACAAATATCTGTTTCTA
Found at i:93820840 original size:40 final size:40
Alignment explanation
Indices: 93820648--93820833 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
93820638 TCGAATGATG
* * *
93820648 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
93820688 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93820728 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93820768 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
93820809 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93820834 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93820840 original size:80 final size:80
Alignment explanation
Indices: 93820648--93820866 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 80
93820638 TCGAATGATG
* * **
93820648 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
93820712 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
93820728 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
*
93820791 TTGTGCGAGTTACTATAA
64 TCGTGCGAGTTACTA-AA
* **
93820809 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
93820867 TACGTGATTC
Statistics
Matches: 119, Mismatches: 12, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
79 17 0.14
80 92 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:93828988 original size:40 final size:40
Alignment explanation
Indices: 93828796--93828981 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
93828786 TCGAATGATG
* * *
93828796 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
93828836 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93828876 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93828916 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
93828957 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93828982 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93828988 original size:80 final size:79
Alignment explanation
Indices: 93828796--93829013 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 79
93828786 TCGAATGATG
* * **
93828796 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
93828860 CGTGCGAGTTACTAAA
64 CGTGCGAGTTACTAAA
* *
93828876 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATT
*
93828940 TGTGCGAGTTACTATAA
64 CGTGCGAGTTACTA-AA
* ** *
93828957 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGTCCGAAGG
93829014 TACGTGATTC
Statistics
Matches: 119, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
78 7 0.06
79 11 0.09
80 91 0.76
81 10 0.08
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTCG
TGCGAGTTACTAAA
Found at i:93837398 original size:26 final size:25
Alignment explanation
Indices: 93837369--93837427 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
93837359 ATTTACTAAA
*
93837369 ATACCCTAAGTATG-AAAATTACCATT
1 ATACCCT-AG-ATGCAAAATGACCATT
*
93837395 ATACCTCTAGGTGCAAAATGACCATT
1 ATACC-CTAGATGCAAAATGACCATT
93837421 ATACCCT
1 ATACCCT
93837428 TAGGGTTGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 4 0.14
26 23 0.79
27 2 0.07
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (25 bp):
ATACCCTAGATGCAAAATGACCATT
Found at i:93837574 original size:28 final size:28
Alignment explanation
Indices: 93837534--93837646 Score: 128
Period size: 28 Copynumber: 4.2 Consensus size: 28
93837524 GGAGGAAGCG
*
93837534 TTCTGGTGGCTCTGTCACAAATATCTAT
1 TTCTGGTGGCTCTGTCACAAATATCTGT
* *
93837562 TTCTGGTGGCTCTGCCACAAATGTCTGT
1 TTCTGGTGGCTCTGTCACAAATATCTGT
* *
93837590 TTCTGGTGGCCCTG---CAATTATCTGT
1 TTCTGGTGGCTCTGTCACAAATATCTGT
* *
93837615 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGTCACAAATATCTGT
93837641 TTCTGG
1 TTCTGG
93837647 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
25 20 0.28
26 5 0.07
27 7 0.10
28 39 0.55
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGTCACAAATATCTGT
Found at i:93850820 original size:93 final size:93
Alignment explanation
Indices: 93850708--93850879 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
93850698 GCCCATAAGT
* *
93850708 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93850773 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
93850801 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93850866 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
93850880 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:93850875 original size:46 final size:46
Alignment explanation
Indices: 93850700--93850875 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
93850690 TGTAACCCGC
* * *
93850700 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
93850746 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
93850796 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
93850839 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93850876 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:93853305 original size:30 final size:30
Alignment explanation
Indices: 93853260--93853348 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
93853250 CAAAGATAAC
93853260 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
93853289 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
93853319 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
93853349 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:93853308 original size:15 final size:15
Alignment explanation
Indices: 93853260--93853339 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
93853250 CAAAGATAAC
*
93853260 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
93853274 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
93853289 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
93853304 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
93853319 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
93853334 AAGAAA
1 AAGAAA
93853340 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:93853348 original size:15 final size:15
Alignment explanation
Indices: 93853271--93853348 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
93853261 AGAAAACCGA
93853271 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
93853286 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
93853300 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
93853315 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
93853331 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
93853346 ATA
1 ATA
93853349 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:93858861 original size:19 final size:19
Alignment explanation
Indices: 93858833--93858869 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
93858823 TGAGAGAAAC
93858833 AAAAACAAAGAAAGAAAAA
1 AAAAACAAAGAAAGAAAAA
* *
93858852 AAAAAGAAAGGAAGAAAA
1 AAAAACAAAGAAAGAAAA
93858870 GTGTTCATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.81, C:0.03, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAACAAAGAAAGAAAAA
Found at i:93860158 original size:40 final size:40
Alignment explanation
Indices: 93860099--93860205 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
93860089 CAATTGAATG
* * * *
93860099 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
93860139 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
93860179 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
93860206 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:93860225 original size:40 final size:39
Alignment explanation
Indices: 93860140--93860266 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
93860130 CTGGAAATTA
* * *
93860140 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
93860178 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
93860220 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
93860260 TATCCGG
1 TATCCGG
93860267 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:93864768 original size:75 final size:75
Alignment explanation
Indices: 93864649--93864820 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
93864639 CATGGCAAAG
** *
93864649 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
93864708 CCATACTGAGC
65 CCATACCGAGC
93864719 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
93864784 CATACCGAGT
66 CATACCGAGC
***
93864794 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
93864821 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:93864787 original size:35 final size:35
Alignment explanation
Indices: 93864652--93864818 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
93864642 GGCAAAGTGT
* **
93864652 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
93864687 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
93864722 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
93864762 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
93864798 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
93864819 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:93864810 original size:36 final size:35
Alignment explanation
Indices: 93864748--93864818 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
93864738 ATTATCAAAT
* *
93864748 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
93864783 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
93864819 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:93872267 original size:75 final size:75
Alignment explanation
Indices: 93872148--93872318 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
93872138 CATGGCAAAG
** *
93872148 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
93872207 CCATACTGAGC
65 CCATACCGAGC
93872218 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
93872283 CATACCGAGT
66 CATACCGAGC
***
93872293 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
93872319 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:93872286 original size:35 final size:35
Alignment explanation
Indices: 93872151--93872316 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
93872141 GGCAAAGTGT
* **
93872151 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
93872186 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
93872221 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
93872261 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
93872296 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
93872317 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:93879098 original size:264 final size:264
Alignment explanation
Indices: 93878619--93879146 Score: 930
Period size: 264 Copynumber: 2.0 Consensus size: 264
93878609 TAACTCAGTG
* * *
93878619 AACATACCGATTATTAAGATAATAGAACTTTATTCATACTAAAGTTTACCATACTTAACAAAATT
1 AACATAACAATTATTAAGAAAATAGAACTTTATTCATACTAAAGTTTACCATACTTAACAAAATT
* * * *
93878684 TCAAATTTTTGAACAAAATATAACCTAACCATAATTTAAAGAAAAGTTAATTCTAAGAGGAAATA
66 TCAAATTTTTGAACAAAATATAACCTAACCATAATTAAAAGAAAAATTAATCCTAAGAGCAAATA
* * *
93878749 GTTTTAATTTTCGATCTCCCTACTTAAGATAAACAATGTCCTCATTGTTAGAAGTGAAAAGATAC
131 ATTTTAATTTTCGATCCCCCCACTTAAGATAAACAATGTCCTCATTGTTAGAAGTGAAAAGATAC
*
93878814 TATACACCAAGTAGGATTCTAGAAAAGGGGAGGTGAGTCAATTTGAGTGCTTCAGTACCAAACTC
196 TATACACCAAGTAGGATTCTAGAAAAGGGGAGGTGAGTCAATTTGAGTGCTTAAGTACCAAACTC
93878879 TCCT
261 TCCT
*
93878883 AACATAACAATTATTAAGAAAATAGAACTTTATTCATACTAAAGTTTAGCATACTTAACAAAATT
1 AACATAACAATTATTAAGAAAATAGAACTTTATTCATACTAAAGTTTACCATACTTAACAAAATT
93878948 TCAAATTTTTGAACAAAATATAACCTAACCATAATTAAAAGAAAAATTAATCCTAAGAGCAAATA
66 TCAAATTTTTGAACAAAATATAACCTAACCATAATTAAAAGAAAAATTAATCCTAAGAGCAAATA
*
93879013 ATTTTAATTTTCGATCCCCCCACTTAAGATAAACAATGTCCTCATTGTTAGAAGTGAAAAGATAT
131 ATTTTAATTTTCGATCCCCCCACTTAAGATAAACAATGTCCTCATTGTTAGAAGTGAAAAGATAC
*
93879078 TATACACCAAGTAGGATTCTAGAAAAGGGGAGGTGAGTCAATTTGAGTGCTTAAGTACCAAGCTC
196 TATACACCAAGTAGGATTCTAGAAAAGGGGAGGTGAGTCAATTTGAGTGCTTAAGTACCAAACTC
93879143 TCCT
261 TCCT
93879147 TAGATCCAAT
Statistics
Matches: 250, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
264 250 1.00
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (264 bp):
AACATAACAATTATTAAGAAAATAGAACTTTATTCATACTAAAGTTTACCATACTTAACAAAATT
TCAAATTTTTGAACAAAATATAACCTAACCATAATTAAAAGAAAAATTAATCCTAAGAGCAAATA
ATTTTAATTTTCGATCCCCCCACTTAAGATAAACAATGTCCTCATTGTTAGAAGTGAAAAGATAC
TATACACCAAGTAGGATTCTAGAAAAGGGGAGGTGAGTCAATTTGAGTGCTTAAGTACCAAACTC
TCCT
Found at i:93880599 original size:24 final size:26
Alignment explanation
Indices: 93880572--93880627 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
93880562 AATATTTTTC
* *
93880572 TAAAATATT-AATAATTTAAT-AAAT
1 TAAAATATTAAAGAATTAAATAAAAT
93880596 TAAAGA-ATTAAAGAATTAAATAAAAT
1 TAAA-ATATTAAAGAATTAAATAAAAT
93880622 TAAAAT
1 TAAAAT
93880628 TTAGGAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
24 7 0.27
25 11 0.42
26 8 0.31
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (26 bp):
TAAAATATTAAAGAATTAAATAAAAT
Found at i:93881371 original size:16 final size:15
Alignment explanation
Indices: 93881346--93881379 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
93881336 AAGGCTGAAA
*
93881346 ATAATTAATATACATT
1 ATAATAAATATA-ATT
93881362 ATAATAAATATAATT
1 ATAATAAATATAATT
93881377 ATA
1 ATA
93881380 TATTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:93881501 original size:29 final size:29
Alignment explanation
Indices: 93881447--93881502 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
93881437 GTCTTTAAAG
* *
93881447 ATATTTACAAAAAGAGACAACTAATTTCA
1 ATATTTACAAAAAGAGAAAACAAATTTCA
*
93881476 ATATTTACAGAAAGA-AAAACCAAATTT
1 ATATTTACAAAAAGAGAAAA-CAAATTT
93881503 TACAAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 3 0.13
29 20 0.87
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.27
Consensus pattern (29 bp):
ATATTTACAAAAAGAGAAAACAAATTTCA
Found at i:93883868 original size:29 final size:29
Alignment explanation
Indices: 93883801--93883925 Score: 126
Period size: 29 Copynumber: 4.3 Consensus size: 29
93883791 AAGTCTACAT
* * * *
93883801 ACATGCATATGGCTCACTAGGCAC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
93883829 ACATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
93883858 ATATTCGTATGGCCCATTAGGCCCAAACC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** ** *
93883887 ACATTCATACAGCCCATTAGGTGCACATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
93883916 ACATTCATAT
1 ACATTCATAT
93883926 ACATGCTTTC
Statistics
Matches: 78, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 19 0.24
29 59 0.76
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:93887418 original size:48 final size:48
Alignment explanation
Indices: 93887357--93888058 Score: 843
Period size: 48 Copynumber: 14.0 Consensus size: 48
93887347 TGTTACAACA
* * * * *
93887357 TTCACATTAGCCATTCGGCTTTACCACATATTCATGTCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
93887405 TTCACATTTGCCATTCGGCTTTACGACATATACATATCTCATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATA--TCACACATATAT
93887455 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
93887503 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
93887551 TTCACATTTGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
93887599 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
93887647 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA-
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
93887694 TTCACATTCGCCATTAGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
93887742 TTCACATTCGCCATTAGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
93887790 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* ** ** **
93887838 TTCACACATATACATATCACACATATATTTCACAT-TAGCCAT-TCGGCTTACCACATATACAT
1 TTCACA-TTAGCCAT-TC-GGC-T-T-TACCACATATA--CATAT---C--A-CACATAT--AT
*
93887900 ATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 -T-TCAC----A-TT---A---GCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
93887961 TTCACATTCGCCATTAGGCTTTACCACATATACATATCACAAATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
93888009 TTCACATTAGCCATTCTGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
93888057 TT
1 TT
93888059 ATTTATCTTG
Statistics
Matches: 574, Mismatches: 47, Indels: 66
0.84 0.07 0.10
Matches are distributed among these distances:
47 45 0.08
48 408 0.71
49 5 0.01
50 45 0.08
51 1 0.00
52 1 0.00
53 3 0.01
54 9 0.02
55 4 0.01
57 1 0.00
59 4 0.01
60 8 0.01
61 2 0.00
62 2 0.00
63 8 0.01
64 4 0.01
66 1 0.00
68 5 0.01
69 7 0.01
70 3 0.01
71 2 0.00
72 1 0.00
73 2 0.00
74 3 0.01
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:93887842 original size:13 final size:13
Alignment explanation
Indices: 93887826--93887871 Score: 65
Period size: 13 Copynumber: 3.4 Consensus size: 13
93887816 CATATACATA
93887826 TCACACATATATT
1 TCACACATATATT
*
93887839 TCACACATATACATA
1 TCACACATAT--ATT
93887854 TCACACATATATT
1 TCACACATATATT
93887867 TCACA
1 TCACA
93887872 TTAGCCATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 17 0.59
15 12 0.41
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (13 bp):
TCACACATATATT
Found at i:93887845 original size:28 final size:28
Alignment explanation
Indices: 93887814--93887871 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
93887804 TCGGCTTTAC
93887814 CACATATACATATCACACATATATTTCA
1 CACATATACATATCACACATATATTTCA
93887842 CACATATACATATCACACATATATTTCA
1 CACATATACATATCACACATATATTTCA
93887870 CA
1 CA
93887872 TTAGCCATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (28 bp):
CACATATACATATCACACATATATTTCA
Found at i:93887852 original size:76 final size:75
Alignment explanation
Indices: 93887766--93887918 Score: 297
Period size: 76 Copynumber: 2.0 Consensus size: 75
93887756 TAGGCTTTAC
93887766 CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACA
1 CACATATACATATCACACATATATTTCACATTAGCCATTCGGC-TTACCACATATACATATCACA
93887831 CATATATTTCA
65 CATATATTTCA
93887842 CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTACCACATATACATATCACAC
1 CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTACCACATATACATATCACAC
93887907 ATATATTTCA
66 ATATATTTCA
93887917 CA
1 CA
93887919 TTCGCCATTC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
75 34 0.44
76 43 0.56
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.32
Consensus pattern (75 bp):
CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTACCACATATACATATCACAC
ATATATTTCA
Found at i:93887854 original size:17 final size:15
Alignment explanation
Indices: 93887814--93887864 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
93887804 TCGGCTTTAC
93887814 CACATATACATATCA
1 CACATATACATATCA
*
93887829 CACATAT--ATTTCA
1 CACATATACATATCA
93887842 CACATATACATATCA
1 CACATATACATATCA
93887857 CACATATA
1 CACATATA
93887865 TTTCACATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 12 0.38
15 20 0.62
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.29
Consensus pattern (15 bp):
CACATATACATATCA
Found at i:93887864 original size:171 final size:171
Alignment explanation
Indices: 93887671--93888014 Score: 618
Period size: 171 Copynumber: 2.0 Consensus size: 171
93887661 TCGGCTTTAC
*
93887671 CACATATACATATCACACATATA-TTCACATTCGCCATTAGGCTTTACCACATATACATATCACA
1 CACATATACATATCACACATATATTTCACATTAGCCATTAGGC-TTACCACATATACATATCACA
93887735 CATATATTTCACATTCGCCATTAGGCTTTACCACATATACATATCACACATATATTTCACATTAG
65 CATATATTTCACATTCGCCATTAGGCTTTACCACATATACATATCACACATATATTTCACATTAG
* *
93887800 CCATTCGGCTTTACCACATATACATATCACACATATATTTCA
130 CCATTAGGCTTTACCACATATACATATCACAAATATATTTCA
*
93887842 CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTACCACATATACATATCACAC
1 CACATATACATATCACACATATATTTCACATTAGCCATTAGGCTTACCACATATACATATCACAC
* *
93887907 ATATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTCGC
66 ATATATTTCACATTCGCCATTAGGCTTTACCACATATACATATCACACATATATTTCACATTAGC
93887972 CATTAGGCTTTACCACATATACATATCACAAATATATTTCA
131 CATTAGGCTTTACCACATATACATATCACAAATATATTTCA
93888013 CA
1 CA
93888015 TTAGCCATTC
Statistics
Matches: 166, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
171 149 0.90
172 17 0.10
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (171 bp):
CACATATACATATCACACATATATTTCACATTAGCCATTAGGCTTACCACATATACATATCACAC
ATATATTTCACATTCGCCATTAGGCTTTACCACATATACATATCACACATATATTTCACATTAGC
CATTAGGCTTTACCACATATACATATCACAAATATATTTCA
Found at i:93887882 original size:219 final size:219
Alignment explanation
Indices: 93887401--93888058 Score: 958
Period size: 219 Copynumber: 2.9 Consensus size: 219
93887391 TGTCTCATAC
* * * * *
93887401 ATATTTCACATTTGCCATTCGGCTTTACGACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACATTAGCCATTCGGC-TTACCACATATACATA--TCACACATATATTTCACATTCGC
* * *
93887466 CATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACA
63 CATTAGGCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTAGGCTTTACCACA
* * * *
93887531 TATACATATCTCATACATATTTCACATTTGCCATTCGGCTTTACCACATATACATATCACACATA
128 TATACATATCACAAATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACAC--A
93887596 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACAT
191 TA--T---A-T-----TT---C---A-CACATATACATATCACACAT
93887643 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA-TTCACATTCGCCA
1 ATATTTCACATTAGCCATTCGGC-TTACCACATATACATATCACACATATATTTCACATTCGCCA
93887707 TTAGGCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTAGGCTTTACCACATA
65 TTAGGCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTAGGCTTTACCACATA
*
93887772 TACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA
130 TACATATCACAAATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA
93887837 TTTCACACATATACATATCACACAT
195 TTTCACACATATACATATCACACAT
93887862 ATATTTCACATTAGCCATTCGGCTTACCACATATACATATCACACATATATTTCACATTCGCCAT
1 ATATTTCACATTAGCCATTCGGCTTACCACATATACATATCACACATATATTTCACATTCGCCAT
*
93887927 TCGGCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTAGGCTTTACCACATAT
66 TAGGCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTAGGCTTTACCACATAT
*
93887992 ACATATCACAAATATATTTCACATTAGCCATTCTGCTTTACCACATATACATATCACACATATAT
131 ACATATCACAAATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
93888057 TT
196 TT
93888059 ATTTATCTTG
Statistics
Matches: 400, Mismatches: 15, Indels: 25
0.91 0.03 0.06
Matches are distributed among these distances:
218 27 0.07
219 186 0.47
220 1 0.00
223 1 0.00
226 2 0.00
231 1 0.00
232 1 0.00
235 1 0.00
237 3 0.01
239 130 0.32
240 9 0.02
242 38 0.09
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.34
Consensus pattern (219 bp):
ATATTTCACATTAGCCATTCGGCTTACCACATATACATATCACACATATATTTCACATTCGCCAT
TAGGCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTAGGCTTTACCACATAT
ACATATCACAAATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
TTCACACATATACATATCACACAT
Found at i:93887938 original size:123 final size:124
Alignment explanation
Indices: 93887718--93887966 Score: 464
Period size: 123 Copynumber: 2.0 Consensus size: 124
93887708 TAGGCTTTAC
*
93887718 CACATATACATATCACACATATATTTCACATTCGCCATTAGGCTTTACCACATATACATATCACA
1 CACATATACATATCACACATATATTTCACATTAGCCATTAGGCTTTACCACATATACATATCACA
93887783 CATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
66 CATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
*
93887842 CACATATACATATCACACATATATTTCACATTAGCCATTCGGC-TTACCACATATACATATCACA
1 CACATATACATATCACACATATATTTCACATTAGCCATTAGGCTTTACCACATATACATATCACA
*
93887906 CATATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
66 CATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
93887965 CA
1 CA
93887967 TTCGCCATTA
Statistics
Matches: 122, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
123 81 0.66
124 41 0.34
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (124 bp):
CACATATACATATCACACATATATTTCACATTAGCCATTAGGCTTTACCACATATACATATCACA
CATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
Found at i:93889747 original size:2 final size:2
Alignment explanation
Indices: 93889740--93889765 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
93889730 TGCCGAATGC
93889740 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
93889766 TCATCCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93896548 original size:29 final size:27
Alignment explanation
Indices: 93896514--93896616 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
93896504 TACTCAATCA
*
93896514 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
93896543 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
93896572 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
93896601 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
93896617 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:93904187 original size:46 final size:46
Alignment explanation
Indices: 93904120--93904253 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
93904110 ATATATATAC
* * *
93904120 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
93904166 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
93904212 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
93904254 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:93904245 original size:47 final size:47
Alignment explanation
Indices: 93904183--93904443 Score: 436
Period size: 47 Copynumber: 5.6 Consensus size: 47
93904173 ACACATTTCG
* * * *
93904183 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93904230 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93904277 CATTGGCCATTCGGCCTTAT--CACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93904322 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
93904369 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
93904416 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
93904444 TATATACAGG
Statistics
Matches: 205, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
45 45 0.22
47 160 0.78
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:93904270 original size:92 final size:92
Alignment explanation
Indices: 93904174--93904443 Score: 436
Period size: 92 Copynumber: 2.9 Consensus size: 92
93904164 CTATCTCATA
* * * *
93904174 CACATT-TCGCATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCC
1 CACATTATCACATTGGCCATTCGGCCTTATCACA-ATACACATGTTCACATTCATCACATTGGCC
93904238 ATTCGGCCTTATCACACATACGCATGTT
65 ATTCGGCCTTATCACACATACGCATGTT
*
93904266 CACATTCATCACATTGGCCATTCGGCCTTATCAC-ATACGCATGTTCACATTCATCACATTGGCC
1 CACATT-ATCACATTGGCCATTCGGCCTTATCACAATACACATGTTCACATTCATCACATTGGCC
93904330 ATTCGGCCTTATCACACATACGCATGTT
65 ATTCGGCCTTATCACACATACGCATGTT
93904358 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
1 CACATT-ATCACATTGGCCATTCGGCCTTATCACA-ATACACATGTTCACATTCATCACATTGGC
*
93904423 CATTCGGCCTTATCACGCATA
64 CATTCGGCCTTATCACACATA
93904444 TATATACAGG
Statistics
Matches: 167, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
92 96 0.57
94 71 0.43
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (92 bp):
CACATTATCACATTGGCCATTCGGCCTTATCACAATACACATGTTCACATTCATCACATTGGCCA
TTCGGCCTTATCACACATACGCATGTT
Done.