Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 30 of 438
Found at i:7461501 original size:7 final size:6
Alignment explanation
Indices: 7461415--7461498 Score: 56
Period size: 6 Copynumber: 14.7 Consensus size: 6
7461405 TAAGTTAAAT
* * *
7461415 TTAATA TCTCATA TTAATA TTAA-A TTAATA -AAATA TT-AT- CTAA-A
1 TTAATA T-TAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
*
7461459 TAAATA TTAA-A TTTAAT- TTAATA TCTAATA TTAATA TTAA
1 TTAATA TTAATA -TTAATA TTAATA T-TAATA TTAATA TTAA
7461499 ATACTATCAG
Statistics
Matches: 60, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
4 1 0.02
5 20 0.33
6 28 0.47
7 11 0.18
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (6 bp):
TTAATA
Found at i:7463376 original size:21 final size:20
Alignment explanation
Indices: 7463350--7463393 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
7463340 TAACACCAAT
7463350 TAAATA-ATAATTAATTTAAAA
1 TAAATATATAA-TAA-TTAAAA
7463371 TAAATATTATAATAATTAAAA
1 TAAATA-TATAATAATTAAAA
7463392 TA
1 TA
7463394 TTTATTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 14 0.67
22 3 0.14
23 4 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAATATATAATAATTAAAA
Found at i:7470389 original size:14 final size:16
Alignment explanation
Indices: 7470365--7470396 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7470355 ATAGAGTTAT
7470365 AATGAAATA-TTAAAA
1 AATGAAATATTTAAAA
7470380 AATG-AATATTTAAAA
1 AATGAAATATTTAAAA
7470395 AA
1 AA
7470397 AAAAGAGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AATGAAATATTTAAAA
Found at i:7475697 original size:14 final size:14
Alignment explanation
Indices: 7475678--7475706 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7475668 TCCAATTCTA
7475678 CTGTTAAAAACTAG
1 CTGTTAAAAACTAG
7475692 CTGTTAAAAACTAG
1 CTGTTAAAAACTAG
7475706 C
1 C
7475707 ATGACTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (14 bp):
CTGTTAAAAACTAG
Found at i:7476354 original size:29 final size:30
Alignment explanation
Indices: 7476311--7476367 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
7476301 AAATTGGATC
7476311 AAATCAAAATTTCATGTATAAAATTACACA
1 AAATCAAAATTTCATGTATAAAATTACACA
*
7476341 AAATCAAAA-TTCATGTATACAATTACA
1 AAATCAAAATTTCATGTATAAAATTACA
7476368 TATTAAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.53, C:0.14, G:0.04, T:0.30
Consensus pattern (30 bp):
AAATCAAAATTTCATGTATAAAATTACACA
Found at i:7476495 original size:2 final size:2
Alignment explanation
Indices: 7476483--7476524 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
7476473 CATGGCAATC
*
7476483 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7476525 TATGTTGTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7482588 original size:25 final size:25
Alignment explanation
Indices: 7482550--7482601 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
7482540 CTTGGCTTGA
**
7482550 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
7482575 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
7482600 CA
1 CA
7482602 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:7486358 original size:2 final size:2
Alignment explanation
Indices: 7486351--7486385 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7486341 TGCATCAAAA
7486351 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7486386 ATACATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7486488 original size:2 final size:2
Alignment explanation
Indices: 7486481--7486513 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7486471 AAACCTAATA
7486481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7486514 AAAGAGATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7488216 original size:44 final size:44
Alignment explanation
Indices: 7488143--7488527 Score: 479
Period size: 44 Copynumber: 8.8 Consensus size: 44
7488133 ATTATTTTTT
** * *
7488143 ATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTCATCTTTG
1 ATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCG
* ** * *
7488187 ATCTGCTCTCTTGACAATACAGAG-GGCCAAATCCGTTATCTTCG
1 ATCTGCTCTC-TGCCGCTACAGAGACGCCAAATCTGTTATCTTCG
* * * * *
7488231 ATCTGTTTTCTGCCGCTAGAGAAACACCAAATCTGTTATCTTCG
1 ATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCG
* *
7488275 ATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCG
1 ATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCG
* *
7488319 ATCTGCTCT-TCGCCGCTACAGAGATGCCAAATCTGTTATCTTTG
1 ATCTGCTCTCT-GCCGCTACAGAGACGCCAAATCTGTTATCTTCG
*
7488363 ATCTGCTCT-TCGCTGCTACAGAGACGCCAAATCTGTTATCTTCG
1 ATCTGCTCTCT-GCCGCTACAGAGACGCCAAATCTGTTATCTTCG
* *
7488407 ATCTGCTCTCCGCTGCTACAGAGACGCCAAATCTGTTATCTTCG
1 ATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCG
* * *
7488451 ATCTGCTCTCCGCCGCTACAGAGATGCCAAATTTGTTATCTTCG
1 ATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCG
* **
7488495 ATCTACTCTCTGCCGCTACAGAGTTGCCAAATC
1 ATCTGCTCTCTGCCGCTACAGAGACGCCAAATC
7488528 ATCTTGGATT
Statistics
Matches: 300, Mismatches: 37, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
43 8 0.03
44 280 0.93
45 12 0.04
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCG
Found at i:7492627 original size:5 final size:5
Alignment explanation
Indices: 7492617--7492676 Score: 65
Period size: 5 Copynumber: 12.2 Consensus size: 5
7492607 TAATGCAAAT
7492617 AATGC AATGC AATGC ACATG- -ATGC AATGC AATGC ACATG- -ATGC AATGC
1 AATGC AATGC AATGC A-ATGC AATGC AATGC AATGC A-ATGC AATGC AATGC
7492665 AATGC AAATGC A
1 AATGC -AATGC A
7492677 TGGGTTGAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
3 6 0.12
5 31 0.65
6 11 0.23
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
AATGC
Found at i:7492632 original size:19 final size:19
Alignment explanation
Indices: 7492608--7492674 Score: 107
Period size: 19 Copynumber: 3.5 Consensus size: 19
7492598 GGGAAAATCT
*
7492608 AATGCAAATAATGCAATGC
1 AATGCAAATGATGCAATGC
*
7492627 AATGCACATGATGCAATGC
1 AATGCAAATGATGCAATGC
*
7492646 AATGCACATGATGCAATGC
1 AATGCAAATGATGCAATGC
7492665 AATGCAAATG
1 AATGCAAATG
7492675 CATGGGTTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (19 bp):
AATGCAAATGATGCAATGC
Found at i:7494563 original size:133 final size:134
Alignment explanation
Indices: 7494240--7494581 Score: 390
Period size: 135 Copynumber: 2.6 Consensus size: 134
7494230 GTGAAATTCC
* * *
7494240 AAAGAGATATTCGATTATTTTGAGCAAATAGGAAATTGCAACCCAGCACGATAGGGTACTATTCC
1 AAAGAGATATTCGATTATTTTGAGCAAACAGGAAATTGCAACCCAGCACGATAGGGCACGATTCC
* * * ***
7494305 CCGAACTGCTAAATATCGAACATTTCCTTTATAAGTTTTTTTTTTTTTTAGAAAACATGAATGAA
66 CTGAATTGCTAAATATCGAACATCTCCTTTAT-AGTTTTTAAATTTTTTAGAAAACATGAATGAA
**
7494370 ATTCT
130 ACACT
* * *
7494375 AAAGAGACATTCGATTATTTTGAGCAAAC-GAGAAATTGCAACCCAACACGTTAGGGCACGATTC
1 AAAGAGATATTCGATTATTTTGAGCAAACAG-GAAATTGCAACCCAGCACGATAGGGCACGATTC
* * *
7494439 CATTAATTGCTAAATATCGAACATCT-CTTT-T-GTTTTAATGAAATTTTTTA-AAAGACATGAG
65 CCTGAATTGCTAAATATCGAACATCTCCTTTATAGTTTT--T-AAATTTTTTAGAAA-ACATGAA
*
7494500 TGGAACACT
126 TGAAACACT
* * * *
7494509 GAAG-GATATTCGATTGTTTCGAACAAACAGGAAATTGCAACCCAGCACGATAGGGCACGATTCC
1 AAAGAGATATTCGATTATTTTGAGCAAACAGGAAATTGCAACCCAGCACGATAGGGCACGATTCC
7494573 CTGAATTGC
66 CTGAATTGC
7494582 CAAACATCTA
Statistics
Matches: 174, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
131 5 0.03
133 64 0.37
134 28 0.16
135 77 0.44
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (134 bp):
AAAGAGATATTCGATTATTTTGAGCAAACAGGAAATTGCAACCCAGCACGATAGGGCACGATTCC
CTGAATTGCTAAATATCGAACATCTCCTTTATAGTTTTTAAATTTTTTAGAAAACATGAATGAAA
CACT
Found at i:7495344 original size:2 final size:2
Alignment explanation
Indices: 7495332--7495367 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7495322 AATAAACCTA
7495332 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7495368 AAAGAGATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7496336 original size:12 final size:11
Alignment explanation
Indices: 7496307--7496336 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
7496297 TTGTAAACAA
7496307 AAATAAAAAAG
1 AAATAAAAAAG
7496318 AAATAAAAAAG
1 AAATAAAAAAG
7496329 AAACTAAA
1 AAA-TAAA
7496337 GAACAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (11 bp):
AAATAAAAAAG
Found at i:7497098 original size:7 final size:7
Alignment explanation
Indices: 7497086--7497113 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
7497076 TTTATTTTAT
7497086 TTTAATA
1 TTTAATA
7497093 TTTAATA
1 TTTAATA
7497100 TTTAATA
1 TTTAATA
7497107 TTTAATA
1 TTTAATA
7497114 ATTTTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTAATA
Found at i:7500080 original size:16 final size:16
Alignment explanation
Indices: 7500059--7500091 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7500049 ATACAAATTC
7500059 TAATTGTGTTATCTTA
1 TAATTGTGTTATCTTA
*
7500075 TAATTGTGTTATTTTA
1 TAATTGTGTTATCTTA
7500091 T
1 T
7500092 CTTTACCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.12, T:0.61
Consensus pattern (16 bp):
TAATTGTGTTATCTTA
Found at i:7501087 original size:26 final size:26
Alignment explanation
Indices: 7501058--7501139 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
7501048 TGGTACAAAT
*
7501058 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
7501084 TGATAATGAATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
7501110 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
7501136 TGAT
1 TGAT
7501140 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:7502330 original size:8 final size:8
Alignment explanation
Indices: 7502317--7502346 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7502307 AGATCGGCAC
7502317 AAGCCGAA
1 AAGCCGAA
7502325 AAGCCGAA
1 AAGCCGAA
*
7502333 ATGCCGAA
1 AAGCCGAA
7502341 AAGCCG
1 AAGCCG
7502347 GTATTTTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:7502615 original size:28 final size:26
Alignment explanation
Indices: 7502583--7502643 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 26
7502573 AAGAATAGTT
7502583 AAATTACT-TGAATACCCCTATGTATGAA
1 AAATTACTGT-AATACCCCTA-G-ATGAA
* *
7502611 AAATTACTGTTATACCCCTAGATGCA
1 AAATTACTGTAATACCCCTAGATGAA
7502637 AAATTAC
1 AAATTAC
7502644 CATTATACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 11 0.37
27 1 0.03
28 17 0.57
29 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACTGTAATACCCCTAGATGAA
Found at i:7502649 original size:26 final size:28
Alignment explanation
Indices: 7502594--7502653 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
7502584 AATTACTTGA
**
7502594 ATACCCCTATGTATGAAAAATTACTGTT
1 ATACCCCTATGTATGAAAAATTACCATT
*
7502622 ATACCCCTA-G-ATGCAAAATTACCATT
1 ATACCCCTATGTATGAAAAATTACCATT
7502648 ATACCC
1 ATACCC
7502654 TTAGGGTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 19 0.66
27 1 0.03
28 9 0.31
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATTACCATT
Found at i:7502844 original size:54 final size:53
Alignment explanation
Indices: 7502762--7502902 Score: 237
Period size: 54 Copynumber: 2.6 Consensus size: 53
7502752 AGGAAGCATC
7502762 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
7502816 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
7502870 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
7502903 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 7 0.08
54 76 0.92
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:7502913 original size:27 final size:27
Alignment explanation
Indices: 7502762--7502920 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
7502752 AGGAAGCATC
*
7502762 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
7502789 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
7502816 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
7502843 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
7502870 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
7502897 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
7502921 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:7506779 original size:16 final size:16
Alignment explanation
Indices: 7506758--7506794 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
7506748 TTGTTATTAT
7506758 TATATGTATGCTTAAA
1 TATATGTATGCTTAAA
7506774 TATATGTATGCTTAAA
1 TATATGTATGCTTAAA
7506790 TATAT
1 TATAT
7506795 ATATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (16 bp):
TATATGTATGCTTAAA
Found at i:7519390 original size:71 final size:71
Alignment explanation
Indices: 7519264--7519402 Score: 206
Period size: 71 Copynumber: 2.0 Consensus size: 71
7519254 CAATTTTTTT
* * * *
7519264 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
7519329 TTTACG
66 TTTACG
* * * *
7519335 TTTCAAAAATCAACTCGTATTACGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
7519400 TTT
66 TTT
7519403 CTGCTTTTTA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (71 bp):
TTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
TTTACG
Found at i:7519530 original size:73 final size:73
Alignment explanation
Indices: 7519437--7519676 Score: 333
Period size: 73 Copynumber: 3.3 Consensus size: 73
7519427 AGAAAATCAG
* **
7519437 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAATTTATGTTTCA
1 CTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTTATGTTTCA
7519502 AAAATTGA
66 AAAATTGA
* **
7519510 CTCATATTACGAGAAATGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTTATGTTTCA
1 CTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTTATGTTTCA
*
7519575 AAATTTGA
66 AAAATTGA
* *
7519583 CTCATATTGCGATAGGTGAGTCAAGCCTCAGGT--CACGCTGAGGTA-TTTTAATTCCTGTTGTT
1 CTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAATT--T-ATGTT
**
7519645 TCAAAAATCAA
63 TCAAAAATTGA
7519656 CTCATATTGCGAGAGGTGAGT
1 CTCATATTGCGAGAGGTGAGT
7519677 TGAGCCTCGG
Statistics
Matches: 148, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
70 8 0.05
71 12 0.08
72 1 0.01
73 127 0.86
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (73 bp):
CTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTTATGTTTCA
AAAATTGA
Found at i:7519540 original size:162 final size:161
Alignment explanation
Indices: 7519269--7519566 Score: 436
Period size: 162 Copynumber: 1.8 Consensus size: 161
7519259 TTTTTTTTCA
*
7519269 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAC
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAC
* * ** *
7519334 GTTTCAAAAATCAACTCGTATTACGAGAAGTGAGTTGAGCCTCAGG-GCACGCTGAGGTATTTTC
66 GTTTCAAAAATCAACTCATATTACGAGAAATGAGTCAAGCCTCAGGCACACGCTGAGGTATTTTC
7519398 AATTTCTGCTTTTTAATTCATGTTTTCCAAG
131 AATTTCTGCTTTTTAATTCATGTTTTCCAAG
* * * *
7519429 AAAATCAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATTT
* **
7519494 ATGTTTCAAAAATTGACTCATATTACGAGAAATGAGTCAAGCCTCAGGTCACACGCTGAGGTATT
64 ACGTTTCAAAAATCAACTCATATTACGAGAAATGAGTCAAGCCTCAGG-CACACGCTGAGGTATT
*
7519559 TTTAATTT
128 TTCAATTT
7519567 ATGTTTCAAA
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
160 38 0.32
162 61 0.51
164 21 0.17
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (161 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAC
GTTTCAAAAATCAACTCATATTACGAGAAATGAGTCAAGCCTCAGGCACACGCTGAGGTATTTTC
AATTTCTGCTTTTTAATTCATGTTTTCCAAG
Found at i:7519683 original size:73 final size:72
Alignment explanation
Indices: 7519429--7519704 Score: 315
Period size: 73 Copynumber: 3.8 Consensus size: 72
7519419 GTTTTCCAAG
* * **
7519429 AAAATCAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGT-ACACGCTGAGGTATTTTTAATTT
7519494 ATGTTTCA
65 ATGTTTCA
** * **
7519502 AAAATTGACTCATATTACGAGAAATGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGT-ACACGCTGAGGTATTTTTAATTT
7519567 ATGTTTCA
65 ATGTTTCA
* ** *
7519575 AAATTTGACTCATATTGCGATAGGTGAGTCAAGCCTCAGGT-CACGCTGAGGTA-TTTTAATTCC
1 AAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTACACGCTGAGGTATTTTTAATT--
*
7519638 TGTTGTTTCA
64 T-ATGTTTCA
** ** *
7519648 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGGCATGCTGAGGTATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTACACGCTGAGGTATTTT
7519705 CAGTTTCTAC
Statistics
Matches: 175, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
70 8 0.05
71 12 0.07
72 3 0.02
73 149 0.85
74 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTACACGCTGAGGTATTTTTAATTTA
TGTTTCA
Found at i:7519805 original size:54 final size:52
Alignment explanation
Indices: 7519720--7519873 Score: 185
Period size: 54 Copynumber: 3.0 Consensus size: 52
7519710 TCTACTTTCC
*
7519720 AATTCCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
*
7519773 AATTTCTGTTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTT
* *
7519824 --TTT-TGTTTTTCAAAAAAATCAACCCATATTGCGAGAAGTGAGTTGAGCCT
1 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
7519874 CGGGTCACAT
Statistics
Matches: 90, Mismatches: 5, Indels: 14
0.83 0.05 0.13
Matches are distributed among these distances:
48 8 0.09
49 4 0.04
50 31 0.34
51 1 0.01
53 13 0.14
54 32 0.36
55 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (52 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
Found at i:7520109 original size:70 final size:71
Alignment explanation
Indices: 7519927--7520176 Score: 279
Period size: 70 Copynumber: 3.5 Consensus size: 71
7519917 AAATTTTTAC
* ** *
7519927 TTTCCTAAAACCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTA
1 TTTCC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTA
* *
7519992 ATTCCTGTTG
65 GTT--T-ATG
* * * * * *
7520002 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAG
1 TTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAG
7520067 TTTATG
66 TTTATG
*
7520073 -TTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAG
1 TTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAG
7520136 TTTATG
66 TTTATG
** ** * *
7520142 TTTAGAAAATTGACTCATCTTGCGAAAGGTGAGTT
1 TTTCCAAAATCAACTCATATTGCGAGAGGTGAGTT
7520177 AAGCTTTTTA
Statistics
Matches: 149, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
69 23 0.15
70 67 0.45
71 2 0.01
72 1 0.01
74 52 0.35
75 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (71 bp):
TTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAG
TTTATG
Found at i:7522084 original size:16 final size:16
Alignment explanation
Indices: 7522063--7522099 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
7522053 TTGTTATTAT
7522063 TATATGTATGCTTAAA
1 TATATGTATGCTTAAA
7522079 TATATGTATGCTTAAA
1 TATATGTATGCTTAAA
7522095 TATAT
1 TATAT
7522100 ATATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (16 bp):
TATATGTATGCTTAAA
Found at i:7523781 original size:8 final size:8
Alignment explanation
Indices: 7523770--7523831 Score: 52
Period size: 8 Copynumber: 7.0 Consensus size: 8
7523760 TTTTTTAATT
7523770 TTAAAAAA
1 TTAAAAAA
7523778 TTAAAAAA
1 TTAAAAAA
7523786 TTATAAAAAAA
1 -T-T-AAAAAA
*
7523797 TTTAAAAA
1 TTAAAAAA
7523805 TTAAAAATCA
1 TTAAAAA--A
*
7523815 TTAAAAGA
1 TTAAAAAA
7523823 TATAAAAAA
1 T-TAAAAAA
7523832 ACATTTTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
8 21 0.48
9 8 0.18
10 9 0.20
11 6 0.14
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (8 bp):
TTAAAAAA
Found at i:7523796 original size:19 final size:19
Alignment explanation
Indices: 7523772--7523832 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 19
7523762 TTTTAATTTT
7523772 AAAAAATTAAAAAATTATA
1 AAAAAATTAAAAAATTATA
*
7523791 AAAAAATTTAAAAATTA-A
1 AAAAAATTAAAAAATTATA
** *
7523809 AAATCATTAAAAGA-TATA
1 AAAAAATTAAAAAATTATA
7523827 AAAAAA
1 AAAAAA
7523833 CATTTTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
17 2 0.06
18 16 0.47
19 16 0.47
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAAAATTAAAAAATTATA
Found at i:7532328 original size:51 final size:51
Alignment explanation
Indices: 7532252--7532359 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 51
7532242 CCAACGTTGT
*
7532252 AGTTAAAATGAGTTTTAAATGCCAACATGAATGTCCAACTAGGATGAGAAA
1 AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
7532303 AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
1 AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
7532354 AGTTAA
1 AGTTAA
7532360 TTTTTTTTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.26
Consensus pattern (51 bp):
AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
Found at i:7533501 original size:103 final size:102
Alignment explanation
Indices: 7533319--7533714 Score: 488
Period size: 103 Copynumber: 3.9 Consensus size: 102
7533309 TCATACTCTC
* * * *
7533319 CCTCACCTCCACTGCCCTCCGGGCAACATGTGACTTTGCACCACTCGGCTCCCTTCCTACATACA
1 CCTCACCTCCACCGTCCTCCGGGCAACATGTGACTTTGCACCACCCGACTCCCTTCCTACATACA
* *
7533384 TCCACCCTCATACTCTCCCTCGCCATCTCTTCGATCT
66 TCCACCCTCGTACTCTCCCTCACCATCTCTTCGATCT
*
7533421 ACCTCACATCCACCGTCCTCCGGGCAACATGTGACTTTGCACCACCCGACTCCCTTCCTACATAC
1 -CCTCACCTCCACCGTCCTCCGGGCAACATGTGACTTTGCACCACCCGACTCCCTTCCTACATAC
*
7533486 ATCCACCCTCGTACTCTCCCTCACCATTTCTTCGATCT
65 ATCCACCCTCGTACTCTCCCTCACCATCTCTTCGATCT
** * ** ** * *
7533524 CCTTCACCTCCATAGTCTTCTAGGCAACACATGACTTTGCACCACCCGGC-CCCTTTCTTACATA
1 CC-TCACCTCCACCGTCCTCCGGGCAACATGTGACTTTGCACCACCCGACTCCC-TTCCTACATA
* * * * *
7533588 TATCTACCCTCGTACTCTCACTCACAATCTCTTCAATCT
64 CATCCACCCTCGTACTCTCCCTCACCATCTCTTCGATCT
* **
7533627 CTCTCACCTCCACCGTCCTCCGGGCAACATGTGACATTGCACCACCTAACTCCCTTCCTACATAC
1 C-CTCACCTCCACCGTCCTCCGGGCAACATGTGACTTTGCACCACCCGACTCCCTTCCTACATAC
* ** *
7533692 ACCCACCCTTATACTCACCCTCA
65 ATCCACCCTCGTACTCTCCCTCA
7533715 TCACCTCCAC
Statistics
Matches: 246, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
102 5 0.02
103 237 0.96
104 4 0.02
ACGTcount: A:0.20, C:0.44, G:0.09, T:0.27
Consensus pattern (102 bp):
CCTCACCTCCACCGTCCTCCGGGCAACATGTGACTTTGCACCACCCGACTCCCTTCCTACATACA
TCCACCCTCGTACTCTCCCTCACCATCTCTTCGATCT
Found at i:7533681 original size:206 final size:206
Alignment explanation
Indices: 7533340--7533714 Score: 547
Period size: 206 Copynumber: 1.8 Consensus size: 206
7533330 CTGCCCTCCG
** * *
7533340 GGCAACATGTGACTTTGCACCACTCGGCTCCCTTCCTACATACATCCACCCTCATACTCTCCCTC
1 GGCAACACATGACTTTGCACCACCCGGCTCCCTTCCTACATACATCCACCCTCATACTCTCACTC
* * * * *
7533405 GCCATCTCTTCGATCTACCTCACATCCACCGTCCTCCGGGCAACATGTGACTTTGCACCACCCGA
66 ACAATCTCTTCAATCTACCTCACATCCACCGTCCTCCGGGCAACATGTGACATTGCACCACCCAA
* * *
7533470 CTCCCTTCCTACATACATCCACCCTCGTACTCTCCCTCACCATTTCTTCGATCTCCTTCACCTCC
131 CTCCCTTCCTACATACACCCACCCTCATACTCACCCTCACCATTTCTTCGATCTCCTTCACCTCC
7533535 ATAGTCTTCTA
196 ATAGTCTTCTA
* * * *
7533546 GGCAACACATGACTTTGCACCACCCGGC-CCCTTTCTTACATATATCTACCCTCGTACTCTCACT
1 GGCAACACATGACTTTGCACCACCCGGCTCCC-TTCCTACATACATCCACCCTCATACTCTCACT
* *
7533610 CACAATCTCTTCAATCT-CTCTCACCTCCACCGTCCTCCGGGCAACATGTGACATTGCACCACCT
65 CACAATCTCTTCAATCTAC-CTCACATCCACCGTCCTCCGGGCAACATGTGACATTGCACCACCC
*
7533674 AACTCCCTTCCTACATACACCCACCCTTATACTCACCCTCA
129 AACTCCCTTCCTACATACACCCACCCTCATACTCACCCTCA
7533715 TCACCTCCAC
Statistics
Matches: 148, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
205 4 0.03
206 144 0.97
ACGTcount: A:0.21, C:0.43, G:0.09, T:0.27
Consensus pattern (206 bp):
GGCAACACATGACTTTGCACCACCCGGCTCCCTTCCTACATACATCCACCCTCATACTCTCACTC
ACAATCTCTTCAATCTACCTCACATCCACCGTCCTCCGGGCAACATGTGACATTGCACCACCCAA
CTCCCTTCCTACATACACCCACCCTCATACTCACCCTCACCATTTCTTCGATCTCCTTCACCTCC
ATAGTCTTCTA
Found at i:7534527 original size:56 final size:56
Alignment explanation
Indices: 7534441--7534553 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
7534431 AAACAGTCTC
*
7534441 ATTGTTAAGTTGGACAAAACTACCTTCATCTCCTCCTTCTATTGGAGCTCTAATAG
1 ATTGTTAAGTTAGACAAAACTACCTTCATCTCCTCCTTCTATTGGAGCTCTAATAG
**
7534497 ATTGTTAAGTTAGATGAAACTACCTTCATCTCCTCCTTCTATTGGAGCTCTAATAG
1 ATTGTTAAGTTAGACAAAACTACCTTCATCTCCTCCTTCTATTGGAGCTCTAATAG
7534553 A
1 A
7534554 AAGTCATTAC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (56 bp):
ATTGTTAAGTTAGACAAAACTACCTTCATCTCCTCCTTCTATTGGAGCTCTAATAG
Found at i:7534831 original size:123 final size:123
Alignment explanation
Indices: 7534607--7534963 Score: 429
Period size: 123 Copynumber: 2.9 Consensus size: 123
7534597 ACATCTGTCA
* * * *
7534607 AAATCTTAGCCCTTCAATTAGTAAAGTTTGTCAAACTTTATTTATGTATTTTTATATAGTTTGTC
1 AAATCTCAGCCCTTCAATTAGTAAAGTTTCT-AAACTTTATTAATGT-TTTTTATATATTTTGTC
* * *
7534672 ---TTTGACAAAAGTACCTTCATCTCCTCCTCCTATTGGAGCTCCAATAAAAGTTCATTAC
64 AAGTTTGACAAAAATACCTTCATCTCCT-CTCCTATTGGAGCTCCAACAAAAGGTCATTAC
* *
7534730 AAATCTCAGCCCTTCAATTAGTAAAGTTTACTAGACTTTGTTAATGTGTTTTTATATATTTTGTC
1 AAATCTCAGCCCTTCAATTAGTAAAGTTT-CTAAACTTTATTAATGT-TTTTTATATATTTTGTC
* * * * *
7534795 AAGTTTGAGAAAAATACCTTTATCTCCT-T-CTGTTGGAGCTCCAACAGAAGGTCTTTAC
64 AAGTTTGACAAAAATACCTTCATCTCCTCTCCTATTGGAGCTCCAACAAAAGGTCATTAC
* * *
7534853 AAATCTCAGCCCTTCAATTGGTAAAGATTGT-TAAACTTTATTAATGTATTTTATGTATTTTGTC
1 AAATCTCAGCCCTTCAATTAGTAAAG-TT-TCTAAACTTTATTAATGTTTTTTATATATTTTGTC
* *
7534917 AAGTTTGACAAAAATACCTTCATCTCCTCATTCTATTGAAGCTCCAA
64 AAGTTTGACAAAAATACCTTCATCTCCTC-TCCTATTGGAGCTCCAA
7534964 TAGGAGTACT
Statistics
Matches: 201, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
122 41 0.20
123 119 0.59
124 5 0.02
125 14 0.07
126 22 0.11
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (123 bp):
AAATCTCAGCCCTTCAATTAGTAAAGTTTCTAAACTTTATTAATGTTTTTTATATATTTTGTCAA
GTTTGACAAAAATACCTTCATCTCCTCTCCTATTGGAGCTCCAACAAAAGGTCATTAC
Found at i:7539440 original size:19 final size:19
Alignment explanation
Indices: 7539418--7539457 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7539408 TACTTCAAGC
* *
7539418 TTTTTAAATTTTTAATTAT
1 TTTTTAAAGTATTAATTAT
*
7539437 TTTTTAACGTATTAATTAT
1 TTTTTAAAGTATTAATTAT
7539456 TT
1 TT
7539458 GGTTAGATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTTAAAGTATTAATTAT
Found at i:7541033 original size:23 final size:24
Alignment explanation
Indices: 7540982--7541038 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
7540972 TTATTTTTAA
*
7540982 CTTTATATTGTGTATCGTATATGT
1 CTTTATATTGTGTATCGTATATAT
*
7541006 TTTTATATATGT-TAT-GTATATAT
1 CTTTATAT-TGTGTATCGTATATAT
7541029 CTTTAGTATT
1 CTTTA-TATT
7541039 ATTAGTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 12 0.43
24 13 0.46
25 3 0.11
ACGTcount: A:0.25, C:0.05, G:0.12, T:0.58
Consensus pattern (24 bp):
CTTTATATTGTGTATCGTATATAT
Found at i:7541400 original size:21 final size:21
Alignment explanation
Indices: 7541376--7541429 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
7541366 ATACTATTAT
* *
7541376 TATATTTATTTTTATTCCTAG
1 TATATTTATTTTTAATACTAG
* *
7541397 TATATTTATTATTAATATTAG
1 TATATTTATTTTTAATACTAG
*
7541418 TATATGTATTTT
1 TATATTTATTTT
7541430 ATTATACGCA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.61
Consensus pattern (21 bp):
TATATTTATTTTTAATACTAG
Found at i:7543064 original size:26 final size:26
Alignment explanation
Indices: 7543027--7543110 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
7543017 TGATACAAAT
*
7543027 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
7543053 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
7543079 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
7543105 TGATAA
1 TGATAA
7543111 GAATATCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:7545124 original size:133 final size:135
Alignment explanation
Indices: 7544886--7545166 Score: 480
Period size: 133 Copynumber: 2.1 Consensus size: 135
7544876 GAGTAGTCTC
7544886 CCCAAATGGGCTTCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
7544951 ATTATCTAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTA-CAC
66 ATTATCTAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
7545014 TGTTA
131 TGTTA
*
7545019 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTT-CATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
7545083 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TATTATCT-AATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
7545147 ACTGTTA
129 ACTGTTA
**
7545154 CCTGAATGGGCTT
1 CCCAAATGGGCTT
7545167 AGGCCCAATG
Statistics
Matches: 140, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
133 100 0.71
134 21 0.15
135 19 0.14
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (135 bp):
CCCAAATGGGCTTCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
ATTATCTAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:7548916 original size:26 final size:26
Alignment explanation
Indices: 7548879--7548987 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
7548869 TGATACAAAT
7548879 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
7548905 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
7548930 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7548956 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7548982 TGATAA
1 TGATAA
7548988 GAATCATGTC
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7548934 original size:51 final size:52
Alignment explanation
Indices: 7548879--7548987 Score: 211
Period size: 51 Copynumber: 2.1 Consensus size: 52
7548869 TGATACAAAT
7548879 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
7548930 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
7548982 TGATAA
1 TGATAA
7548988 GAATCATGTC
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 47 0.82
52 10 0.18
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:7550501 original size:25 final size:26
Alignment explanation
Indices: 7550460--7550511 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
7550450 ATTTACTGTT
7550460 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
7550485 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
7550511 T
1 T
7550512 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:7551008 original size:136 final size:136
Alignment explanation
Indices: 7550759--7551043 Score: 509
Period size: 136 Copynumber: 2.1 Consensus size: 136
7550749 GAGTAGTCTC
7550759 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
7550824 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATCA
66 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7550889 CTGTTA
131 CTGTTA
*
7550895 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
7550959 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
7551024 ACTGTTA
130 ACTGTTA
**
7551031 CCTGAATGGGCTT
1 CCCAAATGGGCTT
7551044 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 57 0.40
136 86 0.60
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:7553385 original size:22 final size:22
Alignment explanation
Indices: 7553357--7553413 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
7553347 GTCGTGGAAA
7553357 CACACGGGTGTGTCCCCTAAAT
1 CACACGGGTGTGTCCCCTAAAT
7553379 CACACGGGTGTGTCCCCTAAAT
1 CACACGGGTGTGTCCCCTAAAT
7553401 CACACGGGTGTGT
1 CACACGGGTGTGT
7553414 GGTACTGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (22 bp):
CACACGGGTGTGTCCCCTAAAT
Found at i:7554586 original size:29 final size:29
Alignment explanation
Indices: 7554544--7554602 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
7554534 CAGTAGTTGA
*
7554544 CAAACAACATCGAGCTAAAAAGGCATAAG
1 CAAACAACATCGAGCTAAAAAGACATAAG
7554573 CAAACAACATCGAGCTAAAAAGACATAAG
1 CAAACAACATCGAGCTAAAAAGACATAAG
7554602 C
1 C
7554603 TCTATGCTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.53, C:0.22, G:0.15, T:0.10
Consensus pattern (29 bp):
CAAACAACATCGAGCTAAAAAGACATAAG
Found at i:7556290 original size:2 final size:2
Alignment explanation
Indices: 7556283--7556316 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7556273 CTCAAGATTA
7556283 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7556317 TACTTTCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7556747 original size:51 final size:51
Alignment explanation
Indices: 7556629--7556736 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 51
7556619 CCGACGTTGT
*
7556629 AGTTAAAATGAGTTTTAAATGCCAACATGAATGTCCAACTAGGATGAGAAA
1 AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
7556680 AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
1 AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
7556731 AGTTAA
1 AGTTAA
7556737 TTTTTTTTTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.26
Consensus pattern (51 bp):
AGTTAAAATGAGTTTTAAATGCCAACATGAATATCCAACTAGGATGAGAAA
Found at i:7557834 original size:103 final size:103
Alignment explanation
Indices: 7557646--7557997 Score: 399
Period size: 103 Copynumber: 3.4 Consensus size: 103
7557636 AGTATCTAAC
* * *
7557646 TGACTTTTGCACCACCTGG-TCCCCTTCCTACATACATCCACCCTCATACTC-TCTCTCGCCATC
1 TGAC-TTTGCACCACCCGGCT-CCCTTCCTACATACATCCACCCTCGTACTCTTCT-TCACCATC
* * *
7557709 TCTACGATCTACCTCACATCCACCGTCCTCCGAGCAACATG
63 TCTTCGATCTCCCTCACCTCCACCGTCCTCCGAGCAACATG
* *
7557750 TGACTTTGCACCACCCGGCTCTCTTCCTACATACATCCACCCTCGTGCTCTTCTTCACCATCTCT
1 TGACTTTGCACCACCCGGCTCCCTTCCTACATACATCCACCCTCGTACTCTTCTTCACCATCTCT
* * * **
7557815 TCGATCTCCCACACCTCCACAGTCCT-CTAGGCAACACA
66 TCGATCTCCCTCACCTCCACCGTCCTCCGA-GCAACATG
* * * * * * * * *
7557853 TGACTTTGTACCACCTGGCCCCCTTCCTACATATATCTACCCCCGTACTCTCCCTCACAATCTCT
1 TGACTTTGCACCACCCGGCTCCCTTCCTACATACATCCACCCTCGTACTCTTCTTCACCATCTCT
* *
7557918 TCGATCTCCCTCACCTCCACCGTCCTCCGGGTAACATG
66 TCGATCTCCCTCACCTCCACCGTCCTCCGAGCAACATG
* *
7557956 TGACATTACACCACCCGGCTCCCTTCCTACATAC--CCACCCTC
1 TGACTTTGCACCACCCGGCTCCCTTCCTACATACATCCACCCTC
7557998 ATTCTCACCC
Statistics
Matches: 205, Mismatches: 39, Indels: 11
0.80 0.15 0.04
Matches are distributed among these distances:
101 6 0.03
102 2 0.01
103 188 0.92
104 9 0.04
ACGTcount: A:0.19, C:0.44, G:0.10, T:0.27
Consensus pattern (103 bp):
TGACTTTGCACCACCCGGCTCCCTTCCTACATACATCCACCCTCGTACTCTTCTTCACCATCTCT
TCGATCTCCCTCACCTCCACCGTCCTCCGAGCAACATG
Found at i:7559913 original size:26 final size:26
Alignment explanation
Indices: 7559884--7559943 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
7559874 TCCCTTTGAA
* * *
7559884 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
7559910 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
7559938 TCATTC
1 TCATTC
7559944 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:7559929 original size:28 final size:28
Alignment explanation
Indices: 7559898--7559960 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
7559888 TCGATATTTT
7559898 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
7559926 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
7559954 GTACACT
1 GCACACT
7559961 GAGTACCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:7562227 original size:123 final size:123
Alignment explanation
Indices: 7562003--7562342 Score: 395
Period size: 123 Copynumber: 2.7 Consensus size: 123
7561993 ACATCTGTCG
* * * * * *
7562003 AAATCTTAGCCCTTTAATTAGTAAAGTTTGTCAAACTTTATTTATATATTTTTATAAATTTT-TC
1 AAATCTCAGCCCTTCAATTAGTAAAGTTTAT-AAACTTTATTAATGTATTTTTATATATTTTGTC
* * * *
7562067 --CTTTGACAAAAGTACCTTCATCTCCTCCTCCTATTGGAACTCCGATAGAAATTCATTAC
65 AAATTTGACAAAA-TACATTCATCTCCT-CTCCTATTGGAACTCCAATAGAAAGTCATTAC
*
7562126 AAATCTCAGCCCTTCAATTAGTAAAGTTTAATAGACTTTATTAATGTATTTTTATATATTTTGTC
1 AAATCTCAGCCCTTCAATTAGTAAAGTTT-ATAAACTTTATTAATGTATTTTTATATATTTTGTC
* * * * * *
7562191 AAGTTTGACAAATATACATTCATCTCCT-T-TTGTTGGAGCTCCAATAGAAGGTCTTTAC
65 AAATTTGACAAA-ATACATTCATCTCCTCTCCTATTGGAACTCCAATAGAAAGTCATTAC
* *
7562249 AAATCTCAGCCCTTCAATTGGTAAAGATTGT-TAAACTTTATTAATGTATTTTTATGTATTTTGT
1 AAATCTCAGCCCTTCAATTAGTAAAG-TT-TATAAACTTTATTAATGTATTTTTATATATTTTGT
7562313 CAAATTTGACAAAAATACATTCATCTCCTC
64 CAAATTTGAC-AAAATACATTCATCTCCTC
7562343 CTTCTATCGA
Statistics
Matches: 188, Mismatches: 20, Indels: 17
0.84 0.09 0.08
Matches are distributed among these distances:
123 155 0.82
124 9 0.05
125 1 0.01
126 22 0.12
127 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.41
Consensus pattern (123 bp):
AAATCTCAGCCCTTCAATTAGTAAAGTTTATAAACTTTATTAATGTATTTTTATATATTTTGTCA
AATTTGACAAAATACATTCATCTCCTCTCCTATTGGAACTCCAATAGAAAGTCATTAC
Found at i:7564206 original size:19 final size:18
Alignment explanation
Indices: 7564182--7564247 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 18
7564172 AAATTGGAAA
7564182 AAAATAATTTTTTATATTT
1 AAAATAATTTTTTAT-TTT
*
7564201 AAAATAAATTATATTATTTT
1 AAAAT-AATT-TTTTATTTT
*
7564221 AAGAT-ATTTTTTATTTTT
1 AAAATAATTTTTTA-TTTT
*
7564239 AAAAAAATT
1 AAAATAATT
7564248 AATAAATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
17 4 0.11
18 10 0.26
19 8 0.21
20 11 0.29
21 5 0.13
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
AAAATAATTTTTTATTTT
Found at i:7565396 original size:2 final size:2
Alignment explanation
Indices: 7565389--7565418 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7565379 TTAAAATTTG
7565389 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7565419 TAAAATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7565965 original size:38 final size:39
Alignment explanation
Indices: 7565894--7565970 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
7565884 CCGTGACCTT
7565894 CCCTTGGTTCGTGTGAGCTCTCCTTACGAGTT-GGTCAC
1 CCCTTGGTTCGTGTGAGCTCTCCTTACGAGTTGGGTCAC
* ** *
7565932 CCCTTGGTTTGTGTGAGCTCTCCTTGTGGGTTGGGTCAC
1 CCCTTGGTTCGTGTGAGCTCTCCTTACGAGTTGGGTCAC
7565971 GTGCTACCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
38 28 0.82
39 6 0.18
ACGTcount: A:0.08, C:0.26, G:0.30, T:0.36
Consensus pattern (39 bp):
CCCTTGGTTCGTGTGAGCTCTCCTTACGAGTTGGGTCAC
Found at i:7566927 original size:15 final size:14
Alignment explanation
Indices: 7566893--7566927 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
7566883 AATAATTAAA
7566893 TTTAATTAATATAT
1 TTTAATTAATATAT
7566907 TGTTAATTAATATCAT
1 T-TTAATTAATAT-AT
7566923 TTTAA
1 TTTAA
7566928 ATTTGTCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 15 0.79
16 3 0.16
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (14 bp):
TTTAATTAATATAT
Found at i:7569139 original size:11 final size:10
Alignment explanation
Indices: 7569118--7569147 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7569108 ACAAGTTGAT
*
7569118 AAAAATGAAA
1 AAAAAAGAAA
7569128 AAAAAAGAAA
1 AAAAAAGAAA
7569138 AAAAAAGAAA
1 AAAAAAGAAA
7569148 GGGAAAGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:7569255 original size:36 final size:36
Alignment explanation
Indices: 7569214--7569320 Score: 169
Period size: 36 Copynumber: 3.0 Consensus size: 36
7569204 CCACCAAGCT
* *
7569214 CAACTTCAGCTTCAGCTTCAGCTTCATCTTCAACTA
1 CAACTTCAGCTTCTGCTTCAGCTTCACCTTCAACTA
* *
7569250 TAACTTCTGCTTCTGCTTCAGCTTCACCTTCAACTA
1 CAACTTCAGCTTCTGCTTCAGCTTCACCTTCAACTA
*
7569286 CAACTTCAGCTTCTGCTTCAGCTTCAGCTTCAACT
1 CAACTTCAGCTTCTGCTTCAGCTTCACCTTCAACT
7569321 TGAGCTTGAC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 64 1.00
ACGTcount: A:0.21, C:0.34, G:0.09, T:0.36
Consensus pattern (36 bp):
CAACTTCAGCTTCTGCTTCAGCTTCACCTTCAACTA
Found at i:7569329 original size:6 final size:6
Alignment explanation
Indices: 7569217--7569327 Score: 98
Period size: 6 Copynumber: 18.5 Consensus size: 6
7569207 CCAAGCTCAA
* * * * *
7569217 CTTCAG CTTCAG CTTCAG CTTCAT CTTCAA CTAT-AA CTTCTG CTTCTG
1 CTTCAG CTTCAG CTTCAG CTTCAG CTTCAG CT-TCAG CTTCAG CTTCAG
* * * * *
7569265 CTTCAG CTTCAC CTTCAA CTACAA CTTCAG CTTCTG CTTCAG CTTCAG
1 CTTCAG CTTCAG CTTCAG CTTCAG CTTCAG CTTCAG CTTCAG CTTCAG
* *
7569313 CTTCAA CTTGAG CTT
1 CTTCAG CTTCAG CTT
7569328 GACCTTCAGG
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
5 1 0.01
6 86 0.98
7 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.11, T:0.37
Consensus pattern (6 bp):
CTTCAG
Found at i:7571941 original size:23 final size:24
Alignment explanation
Indices: 7571915--7572011 Score: 108
Period size: 23 Copynumber: 4.0 Consensus size: 24
7571905 TACAAAGTGT
7571915 ATACATAGCATTAAAAATATATA-
1 ATACATAGCATTAAAAATATATAC
7571938 ATACATAGCATTAAAAATATATAC
1 ATACATAGCATTAAAAATATATAC
* *
7571962 ATA-ATATGGCGTTGAAAAATACATAC
1 ATACATA--GCATT-AAAAATATATAC
* *
7571988 ATAATATAGTATTAAAAATATATA
1 AT-ACATAGCATTAAAAATATATA
7572012 TATATAGATA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
23 26 0.41
24 3 0.05
25 14 0.22
26 16 0.25
27 1 0.02
28 3 0.05
ACGTcount: A:0.54, C:0.08, G:0.07, T:0.31
Consensus pattern (24 bp):
ATACATAGCATTAAAAATATATAC
Found at i:7572005 original size:26 final size:25
Alignment explanation
Indices: 7571919--7572007 Score: 101
Period size: 26 Copynumber: 3.6 Consensus size: 25
7571909 AAGTGTATAC
* *
7571919 ATAGCATTAAAAATATATA-AT-AC
1 ATAGCATTAAAAATACATACATAAT
*
7571942 ATAGCATTAAAAATATATACATAAT
1 ATAGCATTAAAAATACATACATAAT
* *
7571967 ATGGCGTTGAAAAATACATACATAAT
1 ATAGCATT-AAAAATACATACATAAT
*
7571993 ATAGTATTAAAAATA
1 ATAGCATTAAAAATA
7572008 TATATATATA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
23 19 0.34
24 2 0.04
25 14 0.25
26 21 0.38
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (25 bp):
ATAGCATTAAAAATACATACATAAT
Found at i:7572144 original size:24 final size:24
Alignment explanation
Indices: 7572096--7572161 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
7572086 ATTAAAAGAC
*
7572096 ATATATACGTAATATATATAAAAA
1 ATATATACATAATATATATAAAAA
* *
7572120 ATGTATACATAATATAGTAT-TAAA
1 ATATATACATAATATA-TATAAAAA
* *
7572144 ATATTTACATAGTATATA
1 ATATATACATAATATATA
7572162 CATATTAGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
23 2 0.06
24 30 0.86
25 3 0.09
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.38
Consensus pattern (24 bp):
ATATATACATAATATATATAAAAA
Found at i:7572287 original size:23 final size:23
Alignment explanation
Indices: 7572233--7572288 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
7572223 ATATATATAT
*
7572233 ATATATAATA-ATGATATTAGAA
1 ATATATAATATATAATATTAGAA
*
7572255 ATACT-CAATATATAATATTAGAA
1 ATA-TATAATATATAATATTAGAA
7572278 ATATATAATAT
1 ATATATAATAT
7572289 TTAAAATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 8 0.29
23 20 0.71
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.38
Consensus pattern (23 bp):
ATATATAATATATAATATTAGAA
Found at i:7572297 original size:14 final size:16
Alignment explanation
Indices: 7572261--7572300 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
7572251 AGAAATACTC
7572261 AATATATAATATTAGA
1 AATATATAATATTAGA
7572277 AATATATAATATTTA-A
1 AATATATAATA-TTAGA
7572293 AATATATA
1 AATATATA
7572301 CATAATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
AATATATAATATTAGA
Found at i:7573252 original size:5 final size:5
Alignment explanation
Indices: 7573242--7573272 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
7573232 ATATGTATGT
*
7573242 AGAAA AGAAA AGAAA AGAAA AAAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
7573273 AAGAACAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:7574661 original size:75 final size:76
Alignment explanation
Indices: 7574374--7574683 Score: 300
Period size: 77 Copynumber: 4.0 Consensus size: 76
7574364 GGAAACAAAA
* ** * * **
7574374 TTTGAAAAATGGATTTTGAAAATACCTC-GACATGTGACCCAAGGCTCAACTCACTTCTCATAAT
1 TTTGAAAAATAGAAATT-AAAATACCTCAG-CGTGTGACCCAAGGCTCAACTCACCTCTCGCAAT
*
7574438 ATGAGTTGATTTTTTT
64 ATAAGTTGA---TTTT
* * * * * * ** *
7574454 TTTGAAAAACATAAATTAAAAATAACTCAGTGCGTGATCTGAGGCTCAACTCACCTCTCGTAATA
1 TTTGAAAAATAGAAATT-AAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATA
* *
7574519 TAAGTTAATTTG
65 TAAGTTGATTTT
* * * *
7574531 TTTGAAAAATAGAGACTAAAAATACCTCAGCGTGTGACTCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAATAGA-AATTAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATA
*
7574596 TGAGTTGATTTT
65 TAAGTTGATTTT
* *
7574608 TTTG-AAAATAGAAATTGAAATACCTCGGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAATAGAAATTAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATAT
*
7574672 AATTTGATTTT
66 AAGTTGATTTT
7574683 T
1 T
7574684 AAAACAAATG
Statistics
Matches: 188, Mismatches: 40, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
75 56 0.30
76 8 0.04
77 67 0.36
78 2 0.01
80 54 0.29
81 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
TTTGAAAAATAGAAATTAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATAT
AAGTTGATTTT
Found at i:7574756 original size:87 final size:86
Alignment explanation
Indices: 7574609--7574860 Score: 231
Period size: 87 Copynumber: 2.9 Consensus size: 86
7574599 GTTGATTTTT
* * *
7574609 TTGAAAATAGAAATTGAAATACCTCGGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATAA
1 TTGAAAACAGAAATTGAAATACCTCAGCGTGT-ACCCAAGGCTCAACTCACCTCTAGCAATATAA
*
7574674 TTTGATTTTTAAAACAAATGAA
65 GTTGATTTTTAAAACAAATGAA
* * *
7574696 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGT-CCCGAGGCTCAAGTCACCTCTAGCAATATG
1 TTGAAAA-CAGAAATTG-AAATACCTCAGCGTGTACCCAAGGCTCAACTCACCTCTAGCAATATA
**
7574760 AGTTGATTTTTTTGAA-AAATAGAAA
64 AGTTGA-TTTTTAAAACAAAT-G-AA
* * * * * * * **
7574785 TTAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGATACTCAACTCACCTCTCA-CAATAT
1 TTGAAAACAGAAATTG-AAATACCTCAGCGTGT-ACCCAAGGCTCAACTCACCTCT-AGCAATAT
*
7574849 GAGTTGATTTTT
63 AAGTTGATTTTT
7574861 GACGAATAGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
87 42 0.30
88 38 0.27
89 28 0.20
90 31 0.22
91 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (86 bp):
TTGAAAACAGAAATTGAAATACCTCAGCGTGTACCCAAGGCTCAACTCACCTCTAGCAATATAAG
TTGATTTTTAAAACAAATGAA
Found at i:7574873 original size:88 final size:86
Alignment explanation
Indices: 7574612--7574879 Score: 238
Period size: 88 Copynumber: 3.0 Consensus size: 86
7574602 GATTTTTTTG
* * * * * * * *
7574612 AAAATAGAAATTG-AAATACCTCGGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATAATT
1 AAAACAGAAATTGAAAAGACCTCAGCGTG-G-CCCGAGACTCAACTCACCTCTCACAATATGAGT
*
7574676 TGATTTTTAAAACAAAT-G-AATTGA
64 TGATTTTT--GACAAATAGAAATT-A
* * * * *
7574700 AAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAAGTCACCTCT-AGCAATATGAGTT
1 AAAACAGAAATTGAAAAGACCTCAGCGTGGCCCGAGACTCAACTCACCTCTCA-CAATATGAGTT
*
7574764 GATTTTTTTGAAAAATAGAAATTA
65 GA--TTTTTGACAAATAGAAATTA
* * *
7574788 AAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGATACTCAACTCACCTCTCACAATATGAGT
1 AAAACAGAAATTGAAAAGACCTCAGC--GTGGCCCGAGACTCAACTCACCTCTCACAATATGAGT
* *
7574853 TGATTTTTGACGAATAGAAATTG
64 TGATTTTTGACAAATAGAAATTA
7574876 AAAA
1 AAAA
7574880 TACCTCAGCG
Statistics
Matches: 149, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
87 35 0.23
88 56 0.38
89 23 0.15
90 34 0.23
91 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (86 bp):
AAAACAGAAATTGAAAAGACCTCAGCGTGGCCCGAGACTCAACTCACCTCTCACAATATGAGTTG
ATTTTTGACAAATAGAAATTA
Found at i:7575837 original size:47 final size:47
Alignment explanation
Indices: 7575778--7575868 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
7575768 TTTTGTGTTA
* * *
7575778 ATCAAGACGCCCTTTTTGGGTTTTCACCTTGATCTCTCTTTTTTATT
1 ATCAAGACGCCCTTTTCGGGTTTTCACCTTAATCCCTCTTTTTTATT
* *
7575825 ATCAAGATGCCCTTTTCGGGTTTTCACCTTAATCCCTTTTTTTT
1 ATCAAGACGCCCTTTTCGGGTTTTCACCTTAATCCCTCTTTTTT
7575869 TTAGGCATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.48
Consensus pattern (47 bp):
ATCAAGACGCCCTTTTCGGGTTTTCACCTTAATCCCTCTTTTTTATT
Found at i:7576580 original size:13 final size:13
Alignment explanation
Indices: 7576562--7576614 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
7576552 TGCCCAATGG
7576562 TCTGCCACCACCT
1 TCTGCCACCACCT
*
7576575 TCTGCCACCACCG
1 TCTGCCACCACCT
* *
7576588 TCGGCCACCTACCC
1 TCTGCCACC-ACCT
7576602 TCTGCCACCACCT
1 TCTGCCACCACCT
7576615 GCTCCTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
13 23 0.68
14 11 0.32
ACGTcount: A:0.15, C:0.55, G:0.11, T:0.19
Consensus pattern (13 bp):
TCTGCCACCACCT
Found at i:7577709 original size:3 final size:3
Alignment explanation
Indices: 7577516--7577692 Score: 148
Period size: 3 Copynumber: 59.3 Consensus size: 3
7577506 TTTTATTAAA
* * *
7577516 TAT TAT TAT TAT CAT T-T CTAA TAT TAT TAA TAT TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * * * * * * *
7577561 TAT TGT TAT TAT TAC TAT TAT TAA TAT TCT TGT TAT TAA CAT TGT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7577609 TAT TCCT T-T TAT TAT T-T T-T TAT TTT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
7577652 TAT TAT TAT TAT TAT TAT TAT TAT TAC TAGT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT T
7577693 TCTAGTAATA
Statistics
Matches: 139, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
2 8 0.06
3 126 0.91
4 5 0.04
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:7577987 original size:26 final size:24
Alignment explanation
Indices: 7577958--7578006 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
7577948 ATAAAAAAAG
*
7577958 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
7577984 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
7578007 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:7578026 original size:21 final size:21
Alignment explanation
Indices: 7577977--7578035 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
7577967 ATAATAAATC
*
7577977 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
7577997 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
7578019 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
7578036 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:7578439 original size:25 final size:25
Alignment explanation
Indices: 7578387--7578448 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 25
7578377 ATATTATTAC
7578387 TATATTTATTATTATTAATGATAGTG
1 TATATTT-TTATTATTAATGATAGTG
*
7578413 TATATTTTTATT-TTATATGTATATGTA
1 TATATTTTTATTATTA-ATG-ATA-GTG
7578440 TATATTTTT
1 TATATTTTT
7578449 GTACATAGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
24 3 0.09
25 8 0.25
26 10 0.31
27 11 0.34
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (25 bp):
TATATTTTTATTATTAATGATAGTG
Found at i:7578717 original size:25 final size:27
Alignment explanation
Indices: 7578684--7578742 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
7578674 TTTTAATACC
*
7578684 CTATGTATTG-TGTATATTCTTAAT-A
1 CTATATATTGATGTATATTCTTAATAA
*
7578709 CTATATATTGTATGTATTTTCTTAATAA
1 CTATATATTG-ATGTATATTCTTAATAA
7578737 CTATAT
1 CTATAT
7578743 TATATGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 9 0.31
27 13 0.45
28 7 0.24
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (27 bp):
CTATATATTGATGTATATTCTTAATAA
Found at i:7578724 original size:27 final size:30
Alignment explanation
Indices: 7578694--7578757 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 30
7578684 CTATGTATTG
7578694 TGTATATTCTTAAT-ACTATA-TAT-TGTA
1 TGTATATTCTTAATAACTATATTATATGTA
*
7578721 TGTATTTTCTTAATAACTATATTATATGTA
1 TGTATATTCTTAATAACTATATTATATGTA
*
7578751 TATATAT
1 TGTATAT
7578758 ACTGTGTACG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 13 0.42
28 6 0.19
29 3 0.10
30 9 0.29
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.53
Consensus pattern (30 bp):
TGTATATTCTTAATAACTATATTATATGTA
Found at i:7578748 original size:26 final size:26
Alignment explanation
Indices: 7578694--7578753 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
7578684 CTATGTATTG
*
7578694 TGTATATTCTTAATACTATATATTGTA
1 TGTATATTCTTAATAC-ATATATTATA
*
7578721 TGTATTTTCTTAATA-ACTATATTATA
1 TGTATATTCTTAATACA-TATATTATA
7578747 TGTATAT
1 TGTATAT
7578754 ATATACTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (26 bp):
TGTATATTCTTAATACATATATTATA
Found at i:7579007 original size:2 final size:2
Alignment explanation
Indices: 7579000--7579034 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7578990 CATATTATCT
7579000 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7579035 TTTTAATAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7579075 original size:25 final size:25
Alignment explanation
Indices: 7579047--7579150 Score: 70
Period size: 25 Copynumber: 4.2 Consensus size: 25
7579037 TTAATAAGCC
7579047 TATATTATGTATGTATTTTTAACAT
1 TATATTATGTATGTATTTTTAACAT
* * * * *
7579072 TATACTATGTATATACTTTGTAATAC
1 TATATTATGTATGTA-TTTTTAACAT
* * *
7579098 TATTATCATGT-T-TATATTTAA-AA
1 TA-TATTATGTATGTATTTTTAACAT
* *
7579121 TATATATACGTATGTGTTTTTAACAT
1 TATAT-TATGTATGTATTTTTAACAT
7579147 TATA
1 TATA
7579151 CTATATATAT
Statistics
Matches: 58, Mismatches: 15, Indels: 11
0.69 0.18 0.13
Matches are distributed among these distances:
22 3 0.05
23 6 0.10
24 6 0.10
25 22 0.38
26 15 0.26
27 6 0.10
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.51
Consensus pattern (25 bp):
TATATTATGTATGTATTTTTAACAT
Found at i:7579141 original size:75 final size:75
Alignment explanation
Indices: 7579047--7579212 Score: 298
Period size: 75 Copynumber: 2.2 Consensus size: 75
7579037 TTAATAAGCC
* *
7579047 TATAT-TATGTATGTATTTTTAACATTATACTATGTATATACTTTGTAATACTATTATCATGTTT
1 TATATATACGTATGTATTTTTAACATTATACTATATATATACTTTGTAATACTATTATCATGTTT
7579111 ATATTTAAAA
66 ATATTTAAAA
*
7579121 TATATATACGTATGTGTTTTTAACATTATACTATATATATACTTTGTAATACTATTATCATGTTT
1 TATATATACGTATGTATTTTTAACATTATACTATATATATACTTTGTAATACTATTATCATGTTT
7579186 ATATTTAAAA
66 ATATTTAAAA
7579196 TATATATACGTATGTAT
1 TATATATACGTATGTAT
7579213 AAAGGTAACA
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
74 5 0.06
75 82 0.94
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (75 bp):
TATATATACGTATGTATTTTTAACATTATACTATATATATACTTTGTAATACTATTATCATGTTT
ATATTTAAAA
Found at i:7580675 original size:14 final size:14
Alignment explanation
Indices: 7580653--7580682 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7580643 ATGTATGTAG
*
7580653 AAAAGAAAAGAAAA
1 AAAAAAAAAGAAAA
7580667 AAAAAAAAAGAAAA
1 AAAAAAAAAGAAAA
7580681 AA
1 AA
7580683 GAACAAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAAA
Found at i:7585812 original size:6 final size:6
Alignment explanation
Indices: 7585803--7585873 Score: 52
Period size: 6 Copynumber: 11.8 Consensus size: 6
7585793 GATAAATATA
* * * * * * *
7585803 AATAAC AATAAG AACAAC AACAAC AACAAC AACAAC AAAAAC AACAAC
1 AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC
* * *
7585851 AATAAT AATAAT AATAAT AATAA
1 AATAAC AATAAC AATAAC AATAA
7585874 GCGATGATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.69, C:0.17, G:0.01, T:0.13
Consensus pattern (6 bp):
AATAAC
Found at i:7585823 original size:3 final size:3
Alignment explanation
Indices: 7585815--7585852 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
7585805 TAACAATAAG
*
7585815 AAC AAC AAC AAC AAC AAC AAC AAC AAA AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
7585853 TAATAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:7590044 original size:27 final size:26
Alignment explanation
Indices: 7589996--7590074 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
7589986 AAAGTAAACA
*
7589996 ATAAAACAATTTAAAATGAATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
**
7590022 ATAAAACAAGTTTAAAATAAATAATGT
1 ATAAAACAA-TTTAAAATAAATAATAC
* * **
7590049 ATAAAGCATTTTAAAATCTATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
7590075 TGAAATACCC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
26 22 0.51
27 21 0.49
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (26 bp):
ATAAAACAATTTAAAATAAATAATAC
Found at i:7590257 original size:22 final size:23
Alignment explanation
Indices: 7590232--7590277 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7590222 CAACCAAATC
7590232 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
7590254 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
7590277 A
1 A
7590278 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:7590283 original size:23 final size:23
Alignment explanation
Indices: 7590239--7590283 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7590229 ATCAATTCAA
*
7590239 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
7590262 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
7590284 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:7593246 original size:17 final size:17
Alignment explanation
Indices: 7593224--7593263 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7593214 TGAAATATAT
*
7593224 AATATACAATAACTTAA
1 AATATAAAATAACTTAA
* *
7593241 AATATAAAATAATTTGA
1 AATATAAAATAACTTAA
7593258 AATATA
1 AATATA
7593264 TATATAACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (17 bp):
AATATAAAATAACTTAA
Found at i:7597039 original size:13 final size:13
Alignment explanation
Indices: 7596990--7597037 Score: 69
Period size: 13 Copynumber: 3.7 Consensus size: 13
7596980 TTAATAATAC
7596990 TTTTAAAAAGTAT
1 TTTTAAAAAGTAT
7597003 TTTTAAAAAGTAT
1 TTTTAAAAAGTAT
* * *
7597016 TGTGAAAAATTAT
1 TTTTAAAAAGTAT
7597029 TTTTAAAAA
1 TTTTAAAAA
7597038 TTTAAATGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
TTTTAAAAAGTAT
Found at i:7597315 original size:13 final size:13
Alignment explanation
Indices: 7597297--7597336 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
7597287 GTTATATTTA
7597297 AATAATTAAATAT
1 AATAATTAAATAT
7597310 AATAATTAAATATT
1 AATAATTAAATA-T
* *
7597324 TATAATTAGATAT
1 AATAATTAAATAT
7597337 TGACATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
AATAATTAAATAT
Found at i:7597330 original size:14 final size:14
Alignment explanation
Indices: 7597297--7597347 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
7597287 GTTATATTTA
7597297 AATAATTAAATA-T
1 AATAATTAAATATT
7597310 AATAATTAAATATT
1 AATAATTAAATATT
* *
7597324 TATAATTAGATATT
1 AATAATTAAATATT
7597338 GACATAATTA
1 -A-ATAATTA
7597348 TATTATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 12 0.38
14 13 0.41
16 7 0.22
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (14 bp):
AATAATTAAATATT
Found at i:7603532 original size:126 final size:126
Alignment explanation
Indices: 7603307--7603550 Score: 418
Period size: 126 Copynumber: 1.9 Consensus size: 126
7603297 TTTTTAGCCT
*
7603307 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACTCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* * *
7603372 CTGTGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTTAGAGTGAACTGG
66 CTGTGAATTCTTTAAATACCAAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* *
7603433 TAAGAGGATATTCGAGTATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
7603498 CT-TCGAATTCTTTAAATACCAAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 CTGT-GAATTCTTTAAATACCAAACATTGCCTTTATTTTGAAAAATTTTGAGAG
7603551 AAGATCAATG
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
125 1 0.01
126 110 0.99
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTGTGAATTCTTTAAATACCAAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:7603685 original size:13 final size:12
Alignment explanation
Indices: 7603653--7603702 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
7603643 AACCATATAT
7603653 AAATAATT-A-A
1 AAATAATTAATA
7603663 AAATAA-TAATA
1 AAATAATTAATA
*
7603674 ATAGTAATTAATA
1 A-AATAATTAATA
7603687 GAAATAATTAATA
1 -AAATAATTAATA
7603700 AAA
1 AAA
7603703 CAACAGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 1 0.03
10 7 0.21
11 2 0.06
12 7 0.21
13 15 0.45
14 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (12 bp):
AAATAATTAATA
Found at i:7604448 original size:18 final size:18
Alignment explanation
Indices: 7604415--7604450 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7604405 TAACAAGTAG
**
7604415 GGTGATGGAGTTAGTGGA
1 GGTGATGGAGGCAGTGGA
7604433 GGTGATGGAGGCAGTGGA
1 GGTGATGGAGGCAGTGGA
7604451 TGGTTTAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.03, G:0.53, T:0.22
Consensus pattern (18 bp):
GGTGATGGAGGCAGTGGA
Found at i:7604486 original size:37 final size:37
Alignment explanation
Indices: 7604428--7604508 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
7604418 GATGGAGTTA
7604428 GTGGAGGTGATGGAGGCAGTGGATGGTTTAGTAGGGT
1 GTGGAGGTGATGGAGGCAGTGGATGGTTTAGTAGGGT
* *
7604465 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGAGGTGATGGAGGCAGTGGATGGTTTAGTAGGGT
7604502 GATGGAG
1 G-TGGAG
7604509 TTAGTGGTCG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 36 0.90
38 4 0.10
ACGTcount: A:0.19, C:0.01, G:0.53, T:0.27
Consensus pattern (37 bp):
GTGGAGGTGATGGAGGCAGTGGATGGTTTAGTAGGGT
Found at i:7604502 original size:29 final size:29
Alignment explanation
Indices: 7604469--7604531 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
7604459 TAGGGTGTGG
7604469 GGGTGATGGAGGTAGTGGAT-GGTTTAGTA
1 GGGTGATGGAGGTAGTGG-TCGGTTTAGTA
* *
7604498 GGGTGATGGAGTTAGTGGTCGGTTTAGTG
1 GGGTGATGGAGGTAGTGGTCGGTTTAGTA
7604527 GGGTG
1 GGGTG
7604532 TTTAATTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.16, C:0.02, G:0.51, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGTCGGTTTAGTA
Found at i:7607767 original size:34 final size:34
Alignment explanation
Indices: 7607702--7607773 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
7607692 ATTCTAAATT
* * **
7607702 CTAAATATTAATATTAAATGTTAAATGTTAAACC
1 CTAAATATTAATACTAAATCTTAAAAATTAAACC
* *
7607736 CTAAATATTAATCCTAAATCTTAAAAATTAAATC
1 CTAAATATTAATACTAAATCTTAAAAATTAAACC
7607770 CTAA
1 CTAA
7607774 CCTTGCATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.49, C:0.12, G:0.03, T:0.36
Consensus pattern (34 bp):
CTAAATATTAATACTAAATCTTAAAAATTAAACC
Found at i:7613568 original size:20 final size:20
Alignment explanation
Indices: 7613545--7613594 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
7613535 AAATCCAAAT
7613545 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
* *
7613565 TAAAATATTGAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
7613585 TAAGAATACT
1 TAA-AATACT
7613595 GATGTGGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:7614488 original size:21 final size:22
Alignment explanation
Indices: 7614464--7614510 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
7614454 GTTGTTTTGT
*
7614464 TGTTG-TTTGTTGTCATTTTAA
1 TGTTGTTTTGTTATCATTTTAA
*
7614485 TGTTGTTTTGTTATCATTTTAT
1 TGTTGTTTTGTTATCATTTTAA
7614507 TGTT
1 TGTT
7614511 ATTATTTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.13, C:0.04, G:0.17, T:0.66
Consensus pattern (22 bp):
TGTTGTTTTGTTATCATTTTAA
Found at i:7622200 original size:17 final size:19
Alignment explanation
Indices: 7622167--7622202 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
7622157 ATTTAAATAA
7622167 AAATATTAGATTAAAAAAT
1 AAATATTAGATTAAAAAAT
7622186 AAAT-TTAGA-TAAAAAAT
1 AAATATTAGATTAAAAAAT
7622203 TAGGCCTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (19 bp):
AAATATTAGATTAAAAAAT
Found at i:7625355 original size:21 final size:21
Alignment explanation
Indices: 7625331--7625374 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7625321 CTAAAAGAAG
*
7625331 AAGAAAAAAAAAGGAAAAAAA
1 AAGAAAAAAAAAGAAAAAAAA
*
7625352 AAGAAAGAAAAAGAAAAAAAA
1 AAGAAAAAAAAAGAAAAAAAA
7625373 AA
1 AA
7625375 CTTCTCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (21 bp):
AAGAAAAAAAAAGAAAAAAAA
Found at i:7625373 original size:10 final size:10
Alignment explanation
Indices: 7625331--7625373 Score: 68
Period size: 10 Copynumber: 4.2 Consensus size: 10
7625321 CTAAAAGAAG
7625331 AAGAAAAAAA
1 AAGAAAAAAA
7625341 AAGGAAAAAAA
1 AA-GAAAAAAA
*
7625352 AAGAAAGAAA
1 AAGAAAAAAA
7625362 AAGAAAAAAA
1 AAGAAAAAAA
7625372 AA
1 AA
7625374 ACTTCTCTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 20 0.67
11 10 0.33
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:7627866 original size:23 final size:23
Alignment explanation
Indices: 7627822--7627867 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7627812 ACAATTCCTT
* *
7627822 AAAATTTTGGCCTCCTCTTGTGG
1 AAAAATTTGGCCTCCTCATGTGG
7627845 AAAAATTTGGCCT-CTGCATGTGG
1 AAAAATTTGGCCTCCT-CATGTGG
7627868 CTTTGATGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.35
Consensus pattern (23 bp):
AAAAATTTGGCCTCCTCATGTGG
Found at i:7630946 original size:31 final size:30
Alignment explanation
Indices: 7630887--7630947 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
7630877 TTTTTTTTGC
* *
7630887 AAAAGTGTTCAAATTAAAGTCAAACTTTTT
1 AAAAGTGTTCAAATGAAAGTAAAACTTTTT
*
7630917 AAAAGTGTTCAAATGAAGGTTAAAACTTTTT
1 AAAAGTGTTCAAATGAAAG-TAAAACTTTTT
7630948 TGAAAATACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 17 0.63
31 10 0.37
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (30 bp):
AAAAGTGTTCAAATGAAAGTAAAACTTTTT
Found at i:7634864 original size:13 final size:13
Alignment explanation
Indices: 7634846--7634880 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
7634836 TTTAATAAAT
7634846 TGCAACTAGTGTC
1 TGCAACTAGTGTC
*
7634859 TGCAACTAGTGTT
1 TGCAACTAGTGTC
7634872 TGCAACTAG
1 TGCAACTAG
7634881 GAAGTAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (13 bp):
TGCAACTAGTGTC
Found at i:7635398 original size:24 final size:24
Alignment explanation
Indices: 7635358--7635413 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
7635348 GGTCACCTTT
7635358 ATTGC-AAA-ACGTTTAGGAAGAG
1 ATTGCAAAATACGTTTAGGAAGAG
7635380 ATTGCAAAATACGTTTAGGAAGAG
1 ATTGCAAAATACGTTTAGGAAGAG
7635404 ATTGCAAAAT
1 ATTGCAAAAT
7635414 CTCTCGAACC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 5 0.16
23 3 0.09
24 24 0.75
ACGTcount: A:0.43, C:0.09, G:0.23, T:0.25
Consensus pattern (24 bp):
ATTGCAAAATACGTTTAGGAAGAG
Found at i:7637994 original size:52 final size:48
Alignment explanation
Indices: 7637932--7638124 Score: 196
Period size: 47 Copynumber: 4.0 Consensus size: 48
7637922 GAAATGTGAT
* *
7637932 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG---TGTGATATGTGC
* *
7637984 TTCCGTATAAGACCATATCCGGGATATGGCATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * *
7638031 TACTGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTGA
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * *
7638078 TT-CGTGTAAGACCATGGCTGGGCTATGGCCTCG-GTATGTGATATGTG
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAG--TGTGATATGTG
7638125 ACTATGTGCA
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
46 25 0.20
47 55 0.45
48 11 0.09
50 1 0.01
51 1 0.01
52 29 0.24
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:7640767 original size:31 final size:34
Alignment explanation
Indices: 7640717--7640789 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 34
7640707 ATTATGTCTC
*
7640717 TTTATTTTTGTTTGATTGAATTTT-GTCATAAAT
1 TTTAATTTTGTTTGATTGAATTTTAGTCATAAAT
* * *
7640750 TTTAATTTT-TTT-ATTGAATTTTATTCTTCAAT
1 TTTAATTTTGTTTGATTGAATTTTAGTCATAAAT
7640782 TTTAATTT
1 TTTAATTT
7640790 AAAATAAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 10 0.29
32 17 0.49
33 8 0.23
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (34 bp):
TTTAATTTTGTTTGATTGAATTTTAGTCATAAAT
Found at i:7645464 original size:20 final size:21
Alignment explanation
Indices: 7645439--7645479 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7645429 ATTTTTTAAA
7645439 TATATAATATA-GATTATTTT
1 TATATAATATATGATTATTTT
* *
7645459 TATATATTATATTATTATTTT
1 TATATAATATATGATTATTTT
7645480 AAACACAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
TATATAATATATGATTATTTT
Found at i:7645465 original size:22 final size:21
Alignment explanation
Indices: 7645438--7645479 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
7645428 AATTTTTTAA
7645438 ATATATAATATAGATTATTTTT
1 ATATATAATAT-GATTATTTTT
* *
7645460 ATATATTATATTATTATTTT
1 ATATATAATATGATTATTTT
7645480 AAACACAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
ATATATAATATGATTATTTTT
Found at i:7651620 original size:42 final size:42
Alignment explanation
Indices: 7651573--7651656 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
7651563 ATTGGATTAG
7651573 TTTGGAGGTTAAATTGTGAGTAAAGCTGTTTTATAATTGTAA
1 TTTGGAGGTTAAATTGTGAGTAAAGCTGTTTTATAATTGTAA
7651615 TTTGGAGGTTAAATTGTGAGTAAAGCTGTTTTATAATTGTAA
1 TTTGGAGGTTAAATTGTGAGTAAAGCTGTTTTATAATTGTAA
7651657 GTGTTCGGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.43
Consensus pattern (42 bp):
TTTGGAGGTTAAATTGTGAGTAAAGCTGTTTTATAATTGTAA
Found at i:7658112 original size:20 final size:19
Alignment explanation
Indices: 7658058--7658136 Score: 52
Period size: 20 Copynumber: 4.0 Consensus size: 19
7658048 TTAGGATTTA
*
7658058 AGGTTTAAGGTTTAA-GTT
1 AGGTTTAGGGTTTAAGGTT
* * **
7658076 TGAGTTTTGGGCCTAAGGTT
1 AG-GTTTAGGGTTTAAGGTT
*
7658096 CAGGTTTAGGGTTTAAGATT
1 -AGGTTTAGGGTTTAAGGTT
*
7658116 ACGAGTTTGGGGTTTAAGGTT
1 A-G-GTTTAGGGTTTAAGGTT
7658137 TGGGTTCAGA
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
18 1 0.02
19 10 0.23
20 17 0.39
21 16 0.36
ACGTcount: A:0.22, C:0.05, G:0.33, T:0.41
Consensus pattern (19 bp):
AGGTTTAGGGTTTAAGGTT
Found at i:7666829 original size:38 final size:38
Alignment explanation
Indices: 7666774--7666850 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
7666764 ATGGAGATAG
7666774 TTCAGAGGTTCACTGTGGGAAGTATATAAGAATAGGCC
1 TTCAGAGGTTCACTGTGGGAAGTATATAAGAATAGGCC
*
7666812 TTCAGAGGTTCAGTGTGGGAAGTATATAAGAATAGGCC
1 TTCAGAGGTTCACTGTGGGAAGTATATAAGAATAGGCC
7666850 T
1 T
7666851 ACGTGAGTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (38 bp):
TTCAGAGGTTCACTGTGGGAAGTATATAAGAATAGGCC
Found at i:7667627 original size:2 final size:2
Alignment explanation
Indices: 7667620--7667648 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7667610 GCAAATACAG
7667620 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
7667649 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7668392 original size:16 final size:15
Alignment explanation
Indices: 7668354--7668407 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 15
7668344 ATTAACATAT
* *
7668354 TATTATTTTTAAT-G
1 TATTATTATTACTAG
*
7668368 TATTGTTATTACTAG
1 TATTATTATTACTAG
*
7668383 TTATTATTATTTCTAG
1 -TATTATTATTACTAG
7668399 TATTATTAT
1 TATTATTAT
7668408 ATATAATATT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
14 10 0.30
15 10 0.30
16 13 0.39
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (15 bp):
TATTATTATTACTAG
Found at i:7668679 original size:140 final size:136
Alignment explanation
Indices: 7668387--7668786 Score: 397
Period size: 140 Copynumber: 2.8 Consensus size: 136
7668377 TACTAGTTAT
*
7668387 TATTATTTCTAGTA-TTATTATATATAATATTAGTGTATGTTTTATATATGTATGTATATATATA
1 TATTATTTCTAGTATTTATTATATATAATATTAGTGTATGTTTTAT-TATATATGTATATATATA
* ** * *
7668451 --TAT--A-GTATTA-TCTTAATTACTTTATTTTAATATTACTATTGTATTATATTTACTTTTTA
65 TTTATACATGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATGTTATATTTACTTTTTA
*
7668510 TATTTCA
130 TATTTAA
*
7668517 TCATTATTTCTAGTATTATTATTAGATATAATATTAGTGTATGTTTTATTATATATGTATATATA
1 T-ATTATTTCTAGTA-T-TTATTATATATAATATTAGTGTATGTTTTATTATATATGTATATATA
*
7668582 TATTTATACATGGTATTATTTTTAATTA-TTTCATTTTAATATTTTTATTATGTTATATTTGCTT
63 TATTTATACAT-GTATTATTTTTAATTACTTT-ATTTTAATATTTTTATTATGTTATATTTAC-T
*
7668646 TTTTTTGATTAATAA
125 TTTTAT-ATT--TAA
* * *
7668661 TATTATTACTA-TATTTATTATTATTATTAATAATAGTGTATATTTT-TTATATGTTTATGTATA
1 TATTATTTCTAGTATTTATTA-TA-TA-TAATATTAGTGTATGTTTTATTATA----TATGTATA
*
7668724 TGTATATATTTGTGTACATAGTATTATTTTCTAATTACTTTATTTTAATATTTTTATTATGTT
59 --TATATA-TT-TATACAT-GTATTATTTT-TAATTACTTTATTTTAATATTTTTATTATGTT
7668787 TATGTGTATA
Statistics
Matches: 225, Mismatches: 16, Indels: 37
0.81 0.06 0.13
Matches are distributed among these distances:
130 1 0.00
131 13 0.06
133 17 0.08
134 30 0.13
135 3 0.01
137 1 0.00
139 9 0.04
140 39 0.17
141 8 0.04
142 12 0.05
143 26 0.12
144 3 0.01
146 8 0.04
148 6 0.03
149 2 0.01
150 16 0.07
151 28 0.12
152 3 0.01
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (136 bp):
TATTATTTCTAGTATTTATTATATATAATATTAGTGTATGTTTTATTATATATGTATATATATAT
TTATACATGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATGTTATATTTACTTTTTAT
ATTTAA
Found at i:7668993 original size:27 final size:30
Alignment explanation
Indices: 7668963--7669025 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 30
7668953 ATATGTATCG
7668963 TGTATATTCTTAAT-ACTATA-TAT-TGTA
1 TGTATATTCTTAATAACTATATTATATGTA
*
7668990 TGTATTTTCTTAATAACTATATTATATGTA
1 TGTATATTCTTAATAACTATATTATATGTA
*
7669020 TATATA
1 TGTATA
7669026 CTATGTATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 13 0.43
28 6 0.20
29 3 0.10
30 8 0.27
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (30 bp):
TGTATATTCTTAATAACTATATTATATGTA
Found at i:7669017 original size:26 final size:26
Alignment explanation
Indices: 7668963--7669022 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
7668953 ATATGTATCG
*
7668963 TGTATATTCTTAATACTATATATTGTA
1 TGTATATTCTTAATAC-ATATATTATA
*
7668990 TGTATTTTCTTAATA-ACTATATTATA
1 TGTATATTCTTAATACA-TATATTATA
7669016 TGTATAT
1 TGTATAT
7669023 ATACTATGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (26 bp):
TGTATATTCTTAATACATATATTATA
Done.