Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 301 of 438
Found at i:94088703 original size:15 final size:14
Alignment explanation
Indices: 94088670--94088708 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
94088660 ATATGATTTT
94088670 TATTTTA-AAAATC
1 TATTTTATAAAATC
94088683 TATTTTATAAAATC
1 TATTTTATAAAATC
*
94088697 TATTTTTTAAAA
1 TATTTTATAAAA
94088709 AATTCCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 7 0.29
14 17 0.71
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (14 bp):
TATTTTATAAAATC
Found at i:94088788 original size:15 final size:16
Alignment explanation
Indices: 94088768--94088799 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
94088758 TTCTATATAG
94088768 ATTTTTAATTTT-AAT
1 ATTTTTAATTTTGAAT
94088783 ATTTTTAATTTTGAAT
1 ATTTTTAATTTTGAAT
94088799 A
1 A
94088800 AAACATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTTTTAATTTTGAAT
Found at i:94101466 original size:7 final size:7
Alignment explanation
Indices: 94101454--94101478 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94101444 AGTAAATATA
94101454 TATTTAT
1 TATTTAT
94101461 TATTTAT
1 TATTTAT
94101468 TATTTAT
1 TATTTAT
94101475 TATT
1 TATT
94101479 ACTAAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTTAT
Found at i:94101815 original size:14 final size:15
Alignment explanation
Indices: 94101796--94101824 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
94101786 GAAATGAAAT
94101796 AAAGAAAGAA-AGCA
1 AAAGAAAGAATAGCA
94101810 AAAGAAAGAATAGCA
1 AAAGAAAGAATAGCA
94101825 GAAGCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.07, G:0.21, T:0.03
Consensus pattern (15 bp):
AAAGAAAGAATAGCA
Found at i:94102005 original size:15 final size:15
Alignment explanation
Indices: 94101981--94102019 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
94101971 TGATGAAATT
*
94101981 AAGTTAATACTTTGA
1 AAGTTCATACTTTGA
94101996 AAGTTCATACTTTGA
1 AAGTTCATACTTTGA
94102011 AAGTTCATA
1 AAGTTCATA
94102020 GGTTTATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (15 bp):
AAGTTCATACTTTGA
Found at i:94102722 original size:13 final size:14
Alignment explanation
Indices: 94102701--94102740 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
94102691 ATTCGATTGG
94102701 AAAATGAATTAAA-
1 AAAATGAATTAAAT
*
94102714 AATATGAATTAAAT
1 AAAATGAATTAAAT
94102728 AAAAGTGAATTAA
1 AAAA-TGAATTAA
94102741 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAT
Found at i:94103137 original size:21 final size:21
Alignment explanation
Indices: 94103111--94103151 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
94103101 TTATGTTCCA
94103111 TATCAGGCACCTCGTGTGTCG
1 TATCAGGCACCTCGTGTGTCG
94103132 TATCAGGCACCTCGTGTGTC
1 TATCAGGCACCTCGTGTGTC
94103152 CTTTCAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.29, G:0.27, T:0.29
Consensus pattern (21 bp):
TATCAGGCACCTCGTGTGTCG
Found at i:94103162 original size:21 final size:21
Alignment explanation
Indices: 94103111--94103162 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
94103101 TTATGTTCCA
* *
94103111 TATCAGGCACCTCGTGTGTCG
1 TATCAAGCACCTCGTGTGTCC
*
94103132 TATCAGGCACCTCGTGTGTCC
1 TATCAAGCACCTCGTGTGTCC
*
94103153 TTTCAAGCAC
1 TATCAAGCAC
94103163 TTATGTGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.17, C:0.31, G:0.23, T:0.29
Consensus pattern (21 bp):
TATCAAGCACCTCGTGTGTCC
Found at i:94104818 original size:7 final size:7
Alignment explanation
Indices: 94104806--94104836 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
94104796 ATATATACAT
94104806 AACCCTA
1 AACCCTA
94104813 AACCCTA
1 AACCCTA
94104820 AACCCTA
1 AACCCTA
94104827 AACCCTA
1 AACCCTA
94104834 AAC
1 AAC
94104837 AATATATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.42, G:0.00, T:0.13
Consensus pattern (7 bp):
AACCCTA
Found at i:94105571 original size:26 final size:26
Alignment explanation
Indices: 94105542--94105645 Score: 154
Period size: 26 Copynumber: 4.0 Consensus size: 26
94105532 TGGTACAAAT
*
94105542 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
94105568 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
94105594 TGATAATGGGCTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
94105620 TGATAATGGTTTAGTTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
94105646 AGATGGGAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:94112523 original size:29 final size:28
Alignment explanation
Indices: 94112473--94112532 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
94112463 GAATTTGAGT
* *
94112473 AATTAGGGCTAAATTGTAAAATTAAT-A
1 AATTAGGGCTAAAATGTAAAATAAATGA
*
94112500 AATTGAGGGACTAAAATGTGAAATAAATGA
1 AATT-AGGG-CTAAAATGTAAAATAAATGA
94112530 AAT
1 AAT
94112533 GTATAGACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.15
28 4 0.15
29 15 0.56
30 4 0.15
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.28
Consensus pattern (28 bp):
AATTAGGGCTAAAATGTAAAATAAATGA
Found at i:94113097 original size:43 final size:43
Alignment explanation
Indices: 94113036--94113271 Score: 382
Period size: 43 Copynumber: 5.5 Consensus size: 43
94113026 GATTTCCGAA
* * *
94113036 ATGTGATTACATGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
*
94113079 ATGTGATTATGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
94113122 ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
* *
94113165 ATGTGATTACGTGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
*
94113208 ATGTGATTACGTGTAAGACCACGTCTGGAATGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
* * *
94113251 ATGCGATTACGAGTAATACCA
1 ATGTGATTACGTGTAAGACCA
94113272 TGTTTAATAC
Statistics
Matches: 180, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 180 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
Found at i:94113286 original size:43 final size:43
Alignment explanation
Indices: 94113036--94113301 Score: 379
Period size: 43 Copynumber: 6.2 Consensus size: 43
94113026 GATTTCCGAA
* *
94113036 ATGTGATTACATGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
94113079 ATGTGATTATGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
94113122 ATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
94113165 ATGTGATTACGTGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
94113208 ATGTGATTACGTGTAAGACCACGTCTGGAATGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * * *** *
94113251 ATGCGATTACGAGTAATACCATGTTTAATACGTTGGCATCAAT
1 ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
94113294 ATGTGATT
1 ATGTGATT
94113302 TCAATATGTG
Statistics
Matches: 202, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 202 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:94113335 original size:56 final size:56
Alignment explanation
Indices: 94113260--94113410 Score: 205
Period size: 56 Copynumber: 2.7 Consensus size: 56
94113250 TATGCGATTA
* * *
94113260 CGAGTAATACCATGTTTAATACGTTGGCATCAATATGTGATT-TCAATATGTGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT-AATATGTGTGTG
* * *
94113316 TGAGTAAGACCACGTTTAATACGTTGGCATCGATAGGTGATTCTGATATGTGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTAATATGTGTGTG
* * *
94113372 CAAGTAAGACCACATTTAATACGTTGGCATTGATATGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTG
94113411 TGTGTGAGTA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
56 82 0.99
57 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.34
Consensus pattern (56 bp):
CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTAATATGTGTGTG
Found at i:94113421 original size:43 final size:43
Alignment explanation
Indices: 94113359--94113449 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
94113349 TAGGTGATTC
*
94113359 TGATATGTGTGTGCAAGTAAGACCACATTTAATACGTTGGCAT
1 TGATATGTGTGTGCAAGTAAGACCACACTTAATACGTTGGCAT
** ** *
94113402 TGATATGTGTGTGTGAGTAAGACCATGCTTAATATGTTGGCAT
1 TGATATGTGTGTGCAAGTAAGACCACACTTAATACGTTGGCAT
*
94113445 CGATA
1 TGATA
94113450 GGTGATTCTG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (43 bp):
TGATATGTGTGTGCAAGTAAGACCACACTTAATACGTTGGCAT
Found at i:94114700 original size:2 final size:2
Alignment explanation
Indices: 94114693--94114726 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
94114683 ATTCGGCACT
94114693 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94114727 AGCATATGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94115668 original size:31 final size:31
Alignment explanation
Indices: 94115592--94115735 Score: 179
Period size: 31 Copynumber: 4.7 Consensus size: 31
94115582 TTAGTCTTGC
** *
94115592 CATAT-ACTGGGCCGAAGCCTTTTGTTTAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
94115622 -AGT-T-ACTAGGCCGAAGCCTTTTCATAAAT
1 CA-TATCACTGGGCCGAAGCCTTTTCATAAAT
*
94115651 CATATCACTGGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
94115682 CATATCACTGGGCCTAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
94115713 CATATCATTGGGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
94115736 ACTGTAAACG
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
29 24 0.24
30 3 0.03
31 72 0.73
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:94115941 original size:25 final size:25
Alignment explanation
Indices: 94115882--94115975 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
94115872 CTCTTTTAAT
* * *
94115882 AACTAGGGCAAAACCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
94115906 AGCTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
94115931 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
94115956 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
94115976 AACACTTCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 17 0.27
25 46 0.73
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:94116772 original size:27 final size:27
Alignment explanation
Indices: 94116742--94116843 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
94116732 GGGCATATTC
* * *
94116742 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTCACCCTACAAGGGTATTACA
* *
94116769 GTCACTTCACCCTACAGGGGCT-TTACA
1 GTCATTTCACCCTACAAGGG-TATTACA
* * * **
94116796 GTCTTTTTA-CCTAATAAGGGTATTTTA
1 GTCATTTCACCCT-ACAAGGGTATTACA
94116823 GTCATTTCACCCTACAAGGGT
1 GTCATTTCACCCTACAAGGGT
94116844 GTTTTGGTAA
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
26 4 0.07
27 48 0.86
28 4 0.07
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (27 bp):
GTCATTTCACCCTACAAGGGTATTACA
Found at i:94116890 original size:27 final size:27
Alignment explanation
Indices: 94116837--94117146 Score: 219
Period size: 27 Copynumber: 11.4 Consensus size: 27
94116827 TTTCACCCTA
* * * *
94116837 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
94116864 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
94116891 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* * ** *
94116920 CAAGGGTACTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
94116947 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** *
94116974 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
94117001 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
94117028 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
94117055 CAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * * *
94117081 CTAGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
94117108 CAAGGGTATTTTGGTAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
94117135 CGAGGGTATTTC
1 CAAGGGTATTTC
94117147 AATAATTGGT
Statistics
Matches: 228, Mismatches: 50, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
26 22 0.10
27 177 0.78
28 15 0.07
29 14 0.06
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:94117009 original size:54 final size:52
Alignment explanation
Indices: 94116839--94117146 Score: 249
Period size: 54 Copynumber: 5.7 Consensus size: 52
94116829 TCACCCTACA
* * * * * **
94116839 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTCGGTAATTTTACAAACC
* * * * * * ** *
94116892 AATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTACTTCTGTAATTTTGTAAATC
1 -AGGGTATTT-TGGTAA-TTTTACAAA--CTAGGGTATTTCGGTAATTTTACAAACC
* *
94116948 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACT-AGGGTATTTCGGTAATTTTACAAACC
*
94117002 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACTA-GGGTATTTCGGTAATTTTACAAACC
* * * * * *
94117056 AGGGGTATTTTAGCAATTTTACAGACTAGGGTATTTTGGTAATTTTACTAATCA
1 A-GGGTATTTTGGTAATTTTACAAACTAGGGTATTTCGGTAATTTTAC-AAACC
* *
94117110 AGGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTC
1 AGGGTATTTTGGTAATTTTACAA-ACTAGGGTATTTC
94117147 AATAATTGGT
Statistics
Matches: 208, Mismatches: 35, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
53 41 0.20
54 114 0.55
55 18 0.09
56 35 0.17
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (52 bp):
AGGGTATTTTGGTAATTTTACAAACTAGGGTATTTCGGTAATTTTACAAACC
Found at i:94117129 original size:80 final size:80
Alignment explanation
Indices: 94116944--94117147 Score: 252
Period size: 80 Copynumber: 2.5 Consensus size: 80
94116934 TAATTTTGTA
** * *
94116944 AATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTA
1 AATCAGGGGTATTTTGGTAATTTTACAAACAGAGGGTATTTCAGCAATTTCACAAACCAGTGGTA
94117009 TTTTGGTAATTTTAC
66 TTTTGGTAATTTTAC
* * * * *
94117024 AAACTAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGCAATTTTACAGACTAG-GG
1 AATC-AGGGGTATTTTGGTAATTTTACAAA-CAGAGGGTATTTCAGCAATTTCACAAACCAGTGG
94117087 TATTTTGGTAATTTTAC
64 TATTTTGGTAATTTTAC
* *
94117104 TAATCAAGGGTATTTTGGTAATTTTACAAGTC-GAGGGTATTTCA
1 -AATCAGGGGTATTTTGGTAATTTTACAA-ACAGAGGGTATTTCA
94117148 ATAATTGGTA
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
79 1 0.01
80 55 0.52
81 49 0.46
82 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (80 bp):
AATCAGGGGTATTTTGGTAATTTTACAAACAGAGGGTATTTCAGCAATTTCACAAACCAGTGGTA
TTTTGGTAATTTTAC
Found at i:94117152 original size:27 final size:27
Alignment explanation
Indices: 94117095--94117153 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
94117085 GGTATTTTGG
***
94117095 TAATTTTACTAATCAAGGGTATTTTGG
1 TAATTTTACTAATCAAGGGTATTTCAA
*
94117122 TAATTTTAC-AAGTCGAGGGTATTTCAA
1 TAATTTTACTAA-TCAAGGGTATTTCAA
94117149 TAATT
1 TAATT
94117154 GGTAAACTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.42
Consensus pattern (27 bp):
TAATTTTACTAATCAAGGGTATTTCAA
Found at i:94119470 original size:31 final size:31
Alignment explanation
Indices: 94119384--94119527 Score: 188
Period size: 31 Copynumber: 4.7 Consensus size: 31
94119374 TTAGTCTTGC
** *
94119384 CATAT-ACTGGGCCGAAGCCTTTTGTTTAA-
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
94119413 CAGT-T-ACTAGGCCAAAGCCTTTTCATAAAT
1 CA-TATCACTGGGCCGAAGCCTTTTCATAAAT
*
94119443 CATATCACTGGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
94119474 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
94119505 CATATCACTGGGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
94119528 ACTGTAAACG
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
29 23 0.23
30 4 0.04
31 74 0.73
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:94119770 original size:23 final size:22
Alignment explanation
Indices: 94119733--94119838 Score: 77
Period size: 25 Copynumber: 4.4 Consensus size: 22
94119723 CTGGAGGCCT
*
94119733 AGCCTCTTTTAATAACTAGGGCAA
1 AGCC-CTTTTGATAACT-GGGCAA
*
94119757 AACCCTTTTGATAAGCTGGGCAA
1 AGCCCTTTTGATAA-CTGGGCAA
* *
94119780 AGCCCATTTCGGTAAACTGGGGCAA
1 AGCCC-TTTTGAT-AACT-GGGCAA
* *
94119805 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GAT-AACT-GGGCAA
94119830 AGCCCTTTT
1 AGCCCTTTT
94119839 AGCACTTCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
23 19 0.27
24 15 0.21
25 36 0.51
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (22 bp):
AGCCCTTTTGATAACTGGGCAA
Found at i:94119835 original size:25 final size:25
Alignment explanation
Indices: 94119746--94119838 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
94119736 CTCTTTTAAT
* * *
94119746 AACTAGGGCAAAACCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
94119770 AGCT-GGGCAAAGCCCATTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
94119794 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
94119819 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
94119839 AGCACTTCCT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
23 13 0.22
24 9 0.15
25 38 0.63
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:94120795 original size:27 final size:27
Alignment explanation
Indices: 94120742--94121051 Score: 219
Period size: 27 Copynumber: 11.4 Consensus size: 27
94120732 TTTCACCCTA
* * * *
94120742 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
94120769 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
94120796 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* ** *
94120825 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * * *
94120852 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** *
94120879 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
94120906 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
94120933 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
94120960 CAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * * *
94120986 CTAGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
94121013 CAAGGGTATTTTGGTAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
94121040 CGAGGGTATTTC
1 CAAGGGTATTTC
94121052 AATAATTGGT
Statistics
Matches: 230, Mismatches: 48, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
26 22 0.10
27 178 0.77
28 15 0.07
29 15 0.07
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:94120914 original size:54 final size:52
Alignment explanation
Indices: 94120744--94121051 Score: 249
Period size: 54 Copynumber: 5.7 Consensus size: 52
94120734 TCACCCTACA
* * * * * **
94120744 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTCGGTAATTTTACAAACC
* * * * * ** **
94120797 AATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATT
1 -AGGGTATTT-TGGTAA-TTTTACAAA--CTAGGGTATTTCGGTAATTTTACAAACC
* *
94120853 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACT-AGGGTATTTCGGTAATTTTACAAACC
*
94120907 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACTA-GGGTATTTCGGTAATTTTACAAACC
* * * * * *
94120961 AGGGGTATTTTAGCAATTTTACAGACTAGGGTATTTTGGTAATTTTACTAATCA
1 A-GGGTATTTTGGTAATTTTACAAACTAGGGTATTTCGGTAATTTTAC-AAACC
* *
94121015 AGGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTC
1 AGGGTATTTTGGTAATTTTACAA-ACTAGGGTATTTC
94121052 AATAATTGGT
Statistics
Matches: 208, Mismatches: 35, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
53 41 0.20
54 114 0.55
55 18 0.09
56 35 0.17
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (52 bp):
AGGGTATTTTGGTAATTTTACAAACTAGGGTATTTCGGTAATTTTACAAACC
Found at i:94120945 original size:81 final size:79
Alignment explanation
Indices: 94120827--94121052 Score: 267
Period size: 81 Copynumber: 2.8 Consensus size: 79
94120817 TAGAAAGTCA
** *
94120827 AGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC
1 AGGGTATTT-TGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTC
* *
94120891 GGTAATTTCACAAACC
64 AGCAATTTCACAAACC
*
94120907 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTT
1 AG-GGTATTTTGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTT
* * * *
94120971 TAGCAATTTTACAGACT
63 CAGCAATTTCACAAACC
* * *
94120988 AGGGTATTTTGGTAATTTTACTAATCAAGGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCA
1 AGGGTATTTTGGTAATTTTACAAAT-AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
94121053 ATAATTGGTA
Statistics
Matches: 125, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
79 1 0.01
80 57 0.46
81 67 0.54
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (79 bp):
AGGGTATTTTGGTAATTTTACAAATAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAG
CAATTTCACAAACC
Found at i:94121057 original size:27 final size:27
Alignment explanation
Indices: 94121000--94121058 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
94120990 GGTATTTTGG
***
94121000 TAATTTTACTAATCAAGGGTATTTTGG
1 TAATTTTACTAATCAAGGGTATTTCAA
*
94121027 TAATTTTAC-AAGTCGAGGGTATTTCAA
1 TAATTTTACTAA-TCAAGGGTATTTCAA
94121054 TAATT
1 TAATT
94121059 GGTAAACTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.42
Consensus pattern (27 bp):
TAATTTTACTAATCAAGGGTATTTCAA
Found at i:94122086 original size:2 final size:2
Alignment explanation
Indices: 94122079--94122111 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
94122069 TTTGCTATGT
94122079 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
94122112 TTTGTGATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:94130048 original size:43 final size:43
Alignment explanation
Indices: 94129938--94130092 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 43
94129928 AGCTCGTACA
* * ** * *
94129938 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGAAATCAAATAACG
* *
94129980 ATGCCATTATCCC-GACAGGGTCTTACACGAAAT-AGAATAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGAAATCA-AATAACG
* * *
94130022 ATGCCAATGTCCCAGATATGGTCTTACAC-ATAATCACAAT-ACA
1 ATGCCAATATCCCAGACATGGTCTTACACGA-AATCA-AATAACG
** *
94130065 ATTTCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATATCCCAGACATGGTCTTACA
94130093 TGTAATCACA
Statistics
Matches: 91, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 37 0.41
43 49 0.54
44 4 0.04
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGAAATCAAATAACG
Found at i:94147034 original size:16 final size:17
Alignment explanation
Indices: 94147013--94147047 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
94147003 ACTTTGAAGT
94147013 GTCACAC-GCCCGTGTG
1 GTCACACAGCCCGTGTG
94147029 GTCACACAGGCCCGTGTG
1 GTCACACA-GCCCGTGTG
94147047 G
1 G
94147048 CTTGGGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.17
Consensus pattern (17 bp):
GTCACACAGCCCGTGTG
Found at i:94149360 original size:40 final size:40
Alignment explanation
Indices: 94149278--94149497 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
94149268 ACCCAAGTAT
** * *
94149278 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
94149316 CTTCGGGTCTTAGCTCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
94149356 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
94149396 CTTCGAGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
94149436 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
94149476 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
94149498 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 124 0.82
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:94161527 original size:48 final size:48
Alignment explanation
Indices: 94161471--94161566 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
94161461 CTTGGAGGAG
* *
94161471 TTAGTTTGTTAAAGAAGTTGTTAAGTTGTTGAATCAGTTATTGAAGCT
1 TTAGTTTGTTAAAGAAGTTGTTAAGCTGTTGAATCAATTATTGAAGCT
*
94161519 TTAGTTTGTTAAAGAAGTTGTTAAGCTGTTGAGTCAATTATTGAAGCT
1 TTAGTTTGTTAAAGAAGTTGTTAAGCTGTTGAATCAATTATTGAAGCT
94161567 CTTTGCTTAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.29, C:0.05, G:0.23, T:0.43
Consensus pattern (48 bp):
TTAGTTTGTTAAAGAAGTTGTTAAGCTGTTGAATCAATTATTGAAGCT
Found at i:94162687 original size:26 final size:26
Alignment explanation
Indices: 94162651--94162703 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
94162641 CAATGCTAAG
94162651 TTCTCCTTGAAAGATCTTGGTTGTCT
1 TTCTCCTTGAAAGATCTTGGTTGTCT
94162677 TTCTCCTTGAAAGATCTTGGTTGTCT
1 TTCTCCTTGAAAGATCTTGGTTGTCT
94162703 T
1 T
94162704 GCATACTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.47
Consensus pattern (26 bp):
TTCTCCTTGAAAGATCTTGGTTGTCT
Found at i:94165557 original size:68 final size:68
Alignment explanation
Indices: 94165483--94165616 Score: 178
Period size: 68 Copynumber: 2.0 Consensus size: 68
94165473 TAGACATGGG
* * * * ** * *
94165483 GTTGTATTATGTAAGACCACAGCTTGGTTATGGTAGCCTATGGAGTTCGCTGGGACAGTAAACAC
1 GTTGTATTATGTAAGACCACAGCTTAGCTATGGCAGCATATAAAGTCCACTGGGACAGTAAACAC
94165548 GGA
66 GGA
* *
94165551 GTTGTATTATGTAAGACCATATCTTAGCTATGGCAGCATATAAAGTCCACTGGGACAGTAAACAC
1 GTTGTATTATGTAAGACCACAGCTTAGCTATGGCAGCATATAAAGTCCACTGGGACAGTAAACAC
94165616 G
66 G
94165617 AGGTAGTCTA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (68 bp):
GTTGTATTATGTAAGACCACAGCTTAGCTATGGCAGCATATAAAGTCCACTGGGACAGTAAACAC
GGA
Found at i:94183510 original size:30 final size:31
Alignment explanation
Indices: 94183469--94183538 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
94183459 ATGCAGCTAG
* *
94183469 TAAACCAGTCACTTAAT-TT-TTAAAAAATGA
1 TAAATCAGTCAC-TAATGTTATCAAAAAATGA
*
94183499 TAAATCAGTCACTAATGTTATCAAAAAGTGA
1 TAAATCAGTCACTAATGTTATCAAAAAATGA
*
94183530 CAAATCAGT
1 TAAATCAGT
94183539 TACCCATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.12
30 13 0.38
31 17 0.50
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (31 bp):
TAAATCAGTCACTAATGTTATCAAAAAATGA
Found at i:94185047 original size:3 final size:3
Alignment explanation
Indices: 94185039--94185117 Score: 76
Period size: 3 Copynumber: 27.3 Consensus size: 3
94185029 GAAATTTTTC
* * *
94185039 TCT TCT TCT TC- TCC TCC TCT TCT TCT TCT TAT T-T TCT T-T TCCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T-CT
* *
94185082 TCT TCT TCT TTT TCT TCT TCT TC- TCT ACT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
94185118 TTTATTTTAC
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
2 8 0.12
3 55 0.85
4 2 0.03
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:94185085 original size:26 final size:27
Alignment explanation
Indices: 94185044--94185125 Score: 89
Period size: 26 Copynumber: 3.1 Consensus size: 27
94185034 TTTTCTCTTC
* *
94185044 TTCTTCTCCTCCTCTTCTTCTTCTTATT
1 TTCTTCTTCTCTTCTTCTTCTT-TTATT
*
94185072 TTCTT-TTC-CTTCTTCTTCTTTT-TC
1 TTCTTCTTCTCTTCTTCTTCTTTTATT
*
94185096 TTCTTCTTCTCTACTTCTTCTTTTTATT
1 TTCTTCTTCTCTTCTTCTTC-TTTTATT
94185124 TT
1 TT
94185126 ACTGCCCAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
24 6 0.13
25 5 0.11
26 20 0.44
27 6 0.13
28 8 0.18
ACGTcount: A:0.04, C:0.29, G:0.00, T:0.67
Consensus pattern (27 bp):
TTCTTCTTCTCTTCTTCTTCTTTTATT
Found at i:94185462 original size:2 final size:2
Alignment explanation
Indices: 94185455--94185492 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
94185445 GAAGCTTATC
94185455 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94185493 GCGCACATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94185531 original size:14 final size:14
Alignment explanation
Indices: 94185512--94185539 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
94185502 AAAATTACTT
94185512 ATTTAGAATACAGA
1 ATTTAGAATACAGA
94185526 ATTTAGAATACAGA
1 ATTTAGAATACAGA
94185540 GTTGTGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
ATTTAGAATACAGA
Found at i:94187607 original size:30 final size:30
Alignment explanation
Indices: 94187571--94187630 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
94187561 GAGGTAAAAG
94187571 TTTGTTCATCATTCTTATTCTTTCCAATTC
1 TTTGTTCATCATTCTTATTCTTTCCAATTC
94187601 TTTGTTCATCATTCTTATTCTTTCCAATTC
1 TTTGTTCATCATTCTTATTCTTTCCAATTC
94187631 ACTCAAGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.23, G:0.03, T:0.57
Consensus pattern (30 bp):
TTTGTTCATCATTCTTATTCTTTCCAATTC
Found at i:94188844 original size:9 final size:9
Alignment explanation
Indices: 94188830--94188871 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
94188820 CATGCAAATT
94188830 AGAAAAGAA
1 AGAAAAGAA
94188839 AGAAAAAGAA
1 AG-AAAAGAA
94188849 A-ACAAAGAA
1 AGA-AAAGAA
*
94188858 AGAAAAGAG
1 AGAAAAGAA
94188867 AGAAA
1 AGAAA
94188872 GGGGTTCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 1 0.03
9 19 0.66
10 9 0.31
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (9 bp):
AGAAAAGAA
Found at i:94189924 original size:6 final size:6
Alignment explanation
Indices: 94189913--94189944 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
94189903 TGAGTATCCA
*
94189913 TCCGAG TCCGAG TCCGAG TCTGAG TCCGAG TC
1 TCCGAG TCCGAG TCCGAG TCCGAG TCCGAG TC
94189945 GTGTTAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.22
Consensus pattern (6 bp):
TCCGAG
Found at i:94190022 original size:18 final size:18
Alignment explanation
Indices: 94189999--94190071 Score: 76
Period size: 18 Copynumber: 3.7 Consensus size: 18
94189989 TGAAATGGCC
94189999 AAGATGAGAAATGAATAT
1 AAGATGAGAAATGAATAT
94190017 AAGATGAGAAATATTGAAT-T
1 AAGATGAG-AA-A-TGAATAT
94190037 GGCAAAGATGAGAAATGAATAT
1 ----AAGATGAGAAATGAATAT
94190059 AAGATGAGAAATG
1 AAGATGAGAAATG
94190072 TGATATGAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
18 21 0.45
19 2 0.04
20 2 0.04
21 10 0.21
22 2 0.04
23 2 0.04
24 8 0.17
ACGTcount: A:0.52, C:0.01, G:0.25, T:0.22
Consensus pattern (18 bp):
AAGATGAGAAATGAATAT
Found at i:94190045 original size:42 final size:42
Alignment explanation
Indices: 94189985--94190070 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
94189975 TATGTGATTG
*
94189985 ATATTGAAATGGCCAAGATGAGAAATGAATATAAGATGAGAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATAAGATGAGAA
*
94190027 ATATTGAATTGGCAAAGATGAGAAATGAATATAAGATGAGAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATAAGATGAGAA
94190069 AT
1 AT
94190071 GTGATATGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.50, C:0.03, G:0.23, T:0.23
Consensus pattern (42 bp):
ATATTGAAATGGCAAAGATGAGAAATGAATATAAGATGAGAA
Found at i:94190055 original size:21 final size:21
Alignment explanation
Indices: 94189989--94190056 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
94189979 TGATTGATAT
* *
94189989 TGAAATGGCCAAGATGAGAAA
1 TGAATTGGCAAAGATGAGAAA
94190010 TGAA-T---ATAAGATGAGAAATA
1 TGAATTGGCA-AAGATGAG-AA-A
94190030 TTGAATTGGCAAAGATGAGAAA
1 -TGAATTGGCAAAGATGAGAAA
94190052 TGAAT
1 TGAAT
94190057 ATAAGATGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 16
0.69 0.02 0.29
Matches are distributed among these distances:
18 8 0.21
19 2 0.05
20 2 0.05
21 13 0.34
22 2 0.05
23 2 0.05
24 8 0.21
25 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.25, T:0.22
Consensus pattern (21 bp):
TGAATTGGCAAAGATGAGAAA
Found at i:94190112 original size:32 final size:33
Alignment explanation
Indices: 94190051--94190112 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
94190041 AAGATGAGAA
** *
94190051 ATGAATATAAGATGAGAAATGTGATATGAAATG
1 ATGAATATAAGATGAGAAACCTGAAATGAAATG
*
94190084 ATGAA-ATAAGATGTGAAACCTGAAATGAA
1 ATGAATATAAGATGAGAAACCTGAAATGAA
94190113 TTCAAGTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 20 0.80
33 5 0.20
ACGTcount: A:0.50, C:0.03, G:0.23, T:0.24
Consensus pattern (33 bp):
ATGAATATAAGATGAGAAACCTGAAATGAAATG
Found at i:94210084 original size:45 final size:45
Alignment explanation
Indices: 94209976--94210141 Score: 206
Period size: 45 Copynumber: 3.6 Consensus size: 45
94209966 AGGAATTGAT
** * * * *
94209976 TAAGACCATATTTCAAAGACACTATGGCAACACGACGGAAAAATGAA
1 TAAGACCATGGTTGAAAGACACTATGGCATCAAGAC-G-AGAATGAA
94210023 TAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAATGAA
1 TAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAATGAA
* * * * *
94210068 TAAAATCATGGCTGAAAGACACTATGACATCAAGACGAGAATAAA
1 TAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAATGAA
*
94210113 TAAGACCATGGTTGAAAGACACCATGGCA
1 TAAGACCATGGTTGAAAGACACTATGGCA
94210142 CACTCCAATC
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 71 0.69
46 1 0.01
47 31 0.30
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (45 bp):
TAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAATGAA
Found at i:94211679 original size:19 final size:21
Alignment explanation
Indices: 94211655--94211699 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
94211645 ACATCGTTTT
*
94211655 CAAAAGCCCA-AAG-GCTAAA
1 CAAAAGCACATAAGTGCTAAA
94211674 CAAAAGCACATAAGTGCTAAA
1 CAAAAGCACATAAGTGCTAAA
94211695 CAAAA
1 CAAAA
94211700 ACCTGTAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.39
20 3 0.13
21 11 0.48
ACGTcount: A:0.56, C:0.22, G:0.13, T:0.09
Consensus pattern (21 bp):
CAAAAGCACATAAGTGCTAAA
Found at i:94211729 original size:21 final size:21
Alignment explanation
Indices: 94211705--94211816 Score: 91
Period size: 21 Copynumber: 5.4 Consensus size: 21
94211695 CAAAAACCTG
* *
94211705 TAAGGGTTGAACAGAAGCTCA
1 TAAGAGTTGAACAGAAACTCA
* *
94211726 TAAGAGTTGAACGGAAACCCA
1 TAAGAGTTGAACAGAAACTCA
* *
94211747 TAAG-GTTAAACAGAAGCTCA
1 TAAGAGTTGAACAGAAACTCA
* * * *
94211767 AAAGAGATGAACGGAAACTAA
1 TAAGAGTTGAACAGAAACTCA
* * *
94211788 TTAGGGTTGAACGGAAACTCA
1 TAAGAGTTGAACAGAAACTCA
*
94211809 TATGAGTT
1 TAAGAGTT
94211817 AAATAGAAGC
Statistics
Matches: 68, Mismatches: 22, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
20 15 0.22
21 53 0.78
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (21 bp):
TAAGAGTTGAACAGAAACTCA
Found at i:94214906 original size:18 final size:18
Alignment explanation
Indices: 94214880--94214930 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 18
94214870 TTTAAAACCA
*
94214880 AATTATTTTACAATTAAT
1 AATTCTTTTACAATTAAT
94214898 AATTCTTTT---A-TAGAT
1 AATTCTTTTACAATTA-AT
94214913 AATTCTTTTACAATTAAT
1 AATTCTTTTACAATTAAT
94214931 TTCATAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
14 2 0.07
15 12 0.44
18 11 0.41
19 2 0.07
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (18 bp):
AATTCTTTTACAATTAAT
Found at i:94222048 original size:29 final size:29
Alignment explanation
Indices: 94221986--94222088 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
94221976 GTGACGAGAT
* * *
94221986 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
94222015 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
94222044 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
94222073 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
94222089 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:94232323 original size:18 final size:18
Alignment explanation
Indices: 94232297--94232342 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
94232287 TATTTATTTT
*
94232297 ATATTTATAATA-ATAATA
1 ATATATATAATATATAA-A
94232315 ATATATATAATATATAAA
1 ATATATATAATATATAAA
94232333 ATATAATATA
1 ATAT-ATATA
94232343 TTTACTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATATATAATATATAAA
Found at i:94232329 original size:7 final size:7
Alignment explanation
Indices: 94232302--94232343 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
94232292 ATTTTATATT
94232302 TATAATA
1 TATAATA
94232309 -ATAATA
1 TATAATA
94232315 -AT-ATA
1 TATAATA
94232320 TATAATA
1 TATAATA
*
94232327 TATAAAA
1 TATAATA
94232334 TATAATA
1 TATAATA
94232341 TAT
1 TAT
94232344 TTACTTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 3 0.10
6 10 0.32
7 18 0.58
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
TATAATA
Found at i:94236260 original size:2 final size:2
Alignment explanation
Indices: 94236253--94236285 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
94236243 CAAATATCAA
94236253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94236286 ACATCAGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94236431 original size:19 final size:19
Alignment explanation
Indices: 94236409--94236447 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
94236399 TATATCATAA
94236409 CCGAATATGCCAAACACAT
1 CCGAATATGCCAAACACAT
*
94236428 CCGAATATGCCAACCACAT
1 CCGAATATGCCAAACACAT
94236447 C
1 C
94236448 ATTTAATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.36, G:0.10, T:0.15
Consensus pattern (19 bp):
CCGAATATGCCAAACACAT
Found at i:94241137 original size:26 final size:26
Alignment explanation
Indices: 94241108--94241211 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
94241098 ATTCCCATCT
*
94241108 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
94241134 TGGAACAGTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
94241160 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
94241186 TGGATCATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
94241212 ATTTGTACCG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:94251452 original size:46 final size:46
Alignment explanation
Indices: 94251400--94251575 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
94251390 TGGTTGAGCA
*
94251400 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
94251446 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
94251491 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
94251539 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94251576 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94251556 original size:93 final size:93
Alignment explanation
Indices: 94251397--94251567 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
94251387 GGATGGTTGA
* **
94251397 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94251462 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
94251490 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94251555 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
94251568 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94254209 original size:46 final size:45
Alignment explanation
Indices: 94254099--94254316 Score: 199
Period size: 46 Copynumber: 4.8 Consensus size: 45
94254089 AGATTTGTGT
* * * * *
94254099 GCCAGTGTAAGACCATGTATGGGACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CAGATGAGA
* *
94254147 GCTAGTGTAAGTCATGTCTGGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGA
* * * **
94254193 GCCACTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGA
* * * *
94254239 GCCAGTGTCAGACATGTCTGGGACATGCATCGGCTAC-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GA
*
94254283 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
94254317 ACGGTTACAT
Statistics
Matches: 142, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
43 1 0.01
44 33 0.23
45 2 0.01
46 78 0.55
47 18 0.13
48 10 0.07
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGA
Found at i:94254347 original size:46 final size:43
Alignment explanation
Indices: 94254150--94254353 Score: 171
Period size: 46 Copynumber: 4.5 Consensus size: 43
94254140 GACGAGGGCT
* * * *
94254150 AGTGTAAGTCATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-CAT--GTG-C
* * *
94254196 ACTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGACATG-T-G-C
* * *
94254242 AGTGTCAGACATGTCTGGGACATGCATCGGCTACGAGATGTGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGACATGTGC
94254285 TAGTGTAAGACATGTCTGGGACATGCATCAGC-ACGGTTACATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCAGCTAC-G--ACATGTG-C
*
94254332 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
94254354 CGGCATCAAC
Statistics
Matches: 136, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
43 3 0.02
44 32 0.24
45 3 0.02
46 95 0.70
47 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGACATGTGC
Found at i:94263745 original size:41 final size:41
Alignment explanation
Indices: 94263700--94263817 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
94263690 TGAAAGATAA
94263700 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
94263741 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
94263771 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
94263812 ATGTAG
1 ATGTAG
94263818 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:94263756 original size:71 final size:71
Alignment explanation
Indices: 94263668--94263831 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
94263658 GAGATGTATC
94263668 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
94263733 AGGACA
66 AGGACA
94263739 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
94263804 AGGACA
66 AGGACA
94263810 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
94263832 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:94269110 original size:42 final size:42
Alignment explanation
Indices: 94269055--94269156 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
94269045 GAAGGCTAAA
* *
94269055 CAGAAGCAT-ATAAGTGCTAAACAAAAACCCGTAAGGGTTGAA-
1 CAGAAGC-TCATAAGAGCTAAACAAAAACCCATAAGGGTT-AAG
* * *
94269097 CGGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTAAG
1 CAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGGGTTAAG
*
94269139 CAGAAGCTCAAAAGAGCT
1 CAGAAGCTCATAAGAGCT
94269157 GAACGGAAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
41 3 0.06
42 48 0.94
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.15
Consensus pattern (42 bp):
CAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGGGTTAAG
Found at i:94269117 original size:21 final size:21
Alignment explanation
Indices: 94269093--94269164 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
94269083 CCGTAAGGGT
94269093 TGAACGGAAGCTCATAAGAGC
1 TGAACGGAAGCTCATAAGAGC
* * * *
94269114 TGAACGAAAACCCATAAG-GG
1 TGAACGGAAGCTCATAAGAGC
* * *
94269134 TTAAGCAGAAGCTCAAAAGAGC
1 TGAA-CGGAAGCTCATAAGAGC
94269156 TGAACGGAA
1 TGAACGGAA
94269165 ACCAATTAGG
Statistics
Matches: 36, Mismatches: 13, Indels: 4
0.68 0.25 0.08
Matches are distributed among these distances:
20 4 0.11
21 28 0.78
22 4 0.11
ACGTcount: A:0.43, C:0.18, G:0.26, T:0.12
Consensus pattern (21 bp):
TGAACGGAAGCTCATAAGAGC
Found at i:94269157 original size:42 final size:42
Alignment explanation
Indices: 94269078--94269185 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
94269068 GTGCTAAACA
* * *
94269078 AAAACCCGTAAGGGTTGAACGGAAGCTCATAAGAGCTGAACG
1 AAAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACG
94269120 AAAACCCATAAGGGTT-AAGCAGAAGCTCAAAAGAGCTGAACG
1 AAAACCCATAAGGGTTGAA-CAGAAGCTCAAAAGAGCTGAACG
* * * *
94269162 GAAACCAATTAGGGGTGAACAGAA
1 AAAACCCATAAGGGTTGAACAGAA
94269186 ATTCATATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.04
42 53 0.93
43 2 0.04
ACGTcount: A:0.43, C:0.18, G:0.27, T:0.13
Consensus pattern (42 bp):
AAAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACG
Found at i:94272049 original size:13 final size:13
Alignment explanation
Indices: 94272031--94272062 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
94272021 GACACATGGG
94272031 CGTGTGGCTTGGC
1 CGTGTGGCTTGGC
94272044 CGTGTGGCTTGGC
1 CGTGTGGCTTGGC
94272057 CGTGTG
1 CGTGTG
94272063 ACTTAAGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.22, G:0.47, T:0.31
Consensus pattern (13 bp):
CGTGTGGCTTGGC
Found at i:94272223 original size:24 final size:24
Alignment explanation
Indices: 94272187--94272238 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
94272177 CACGGTCGTG
*
94272187 TAACCGCTGCAGTTTAAATTTTTC
1 TAACCGCTACAGTTTAAATTTTTC
94272211 TAACCGCTACAGTTTAAATTTTTC
1 TAACCGCTACAGTTTAAATTTTTC
94272235 TAAC
1 TAAC
94272239 TTTTTCCTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (24 bp):
TAACCGCTACAGTTTAAATTTTTC
Found at i:94273191 original size:24 final size:24
Alignment explanation
Indices: 94273159--94273229 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
94273149 GGGTGTGACA
94273159 TGAAATGTGGCACTTCAGTGCAAT
1 TGAAATGTGGCACTTCAGTGCAAT
*
94273183 TGAAATGTGGCACTTCAGTGCAAA
1 TGAAATGTGGCACTTCAGTGCAAT
* **
94273207 TGAAA-ATGGCACTTTGGTGCAAT
1 TGAAATGTGGCACTTCAGTGCAAT
94273230 ACTGTGACTA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 14 0.33
24 28 0.67
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (24 bp):
TGAAATGTGGCACTTCAGTGCAAT
Found at i:94275635 original size:115 final size:112
Alignment explanation
Indices: 94275400--94275694 Score: 315
Period size: 115 Copynumber: 2.6 Consensus size: 112
94275390 GAGTCATTTA
* * * * * *
94275400 AAAAAAAAATTTTGGGTGCTGACTAGTAGATGGCCGGCACTAGGTATATTTTTCAGGTCCCAAGG
1 AAAAAAAAATTTTTGGTGTTGGCCAGTAGATGGCCGGCACTAGGTACATTTTTCGGGTCCCAAGG
* **
94275465 CAATTTTTTTTTTTTACTTTTGGACTTTGATGGCCGACACTAGTGTCAAT
66 CAA---TTTTTTTTTACTTTGGGACAATGATGGCCGACACTAGTGTCAAT
* *
94275515 TAAAAAAAATTTTTGGTGTTGGCCAATAGATGGCCGGCACTAGGTACATTTTTCGGGTCCCAAGG
1 AAAAAAAAATTTTTGGTGTTGGCCAGTAGATGGCCGGCACTAGGTACATTTTTCGGGTCCCAAGG
**
94275580 CAA-TTTTTTTTACTTTGGGACAATGATGGTTGACACTAGTGTCCCAAAGT
66 CAATTTTTTTTTACTTTGGGACAATGATGGCCGACACTAGTGT--C-AA-T
** * * * * * *
94275630 AAAAAAAAA-AATTGAGTGTTAGCCAGTAAATGACCGGCACCAAGTACATTTTTTGGGTCCCAAG
1 AAAAAAAAATTTTTG-GTGTTGGCCAGTAGATGGCCGGCACTAGGTACATTTTTCGGGTCCCAAG
94275694 G
65 G
94275695 TTTACTTTGG
Statistics
Matches: 152, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
111 34 0.22
113 1 0.01
114 5 0.03
115 112 0.74
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (112 bp):
AAAAAAAAATTTTTGGTGTTGGCCAGTAGATGGCCGGCACTAGGTACATTTTTCGGGTCCCAAGG
CAATTTTTTTTTACTTTGGGACAATGATGGCCGACACTAGTGTCAAT
Found at i:94276471 original size:90 final size:90
Alignment explanation
Indices: 94276270--94276553 Score: 446
Period size: 90 Copynumber: 3.2 Consensus size: 90
94276260 TTTGTATCTG
*
94276270 TAAATTTAATTTAGTCTGTATTATATGTAGCTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
1 TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
94276335 ATCTG-TTGTAGTTTGTTGGATGTT
66 ATCTGTTTGTAGTTTGTTGGATGTT
* * * * * * *
94276359 TAAATTTAATTTAATCTATATTATATATAGTTTGAATTTAAAAATTTCGTGCACTAATTTTATCC
1 TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
*
94276424 ATCTGTTTGTAGTTTGTTGGGTGTT
66 ATCTGTTTGTAGTTTGTTGGATGTT
* *
94276449 TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAATTTAAAATTTTCATATATTAATTTTACCC
1 TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
94276514 ATCTGTTTGTAGTTTGTT-GATTGTT
66 ATCTGTTTGTAGTTTGTTGGA-TGTT
94276539 TAAATTTAATTTAGT
1 TAAATTTAATTTAGT
94276554 GAATATTATT
Statistics
Matches: 174, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
89 63 0.36
90 111 0.64
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.51
Consensus pattern (90 bp):
TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
ATCTGTTTGTAGTTTGTTGGATGTT
Found at i:94276561 original size:90 final size:89
Alignment explanation
Indices: 94276270--94276596 Score: 433
Period size: 90 Copynumber: 3.7 Consensus size: 89
94276260 TTTGTATCTG
* *
94276270 TAAATTTAATTTAGTCTGTATTATATGTAGCTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
1 TAAATTTAATTTAGTCTATATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
94276335 ATCTG-TTGTAGTTTGTTGGATGTT
66 ATCTGTTTGTAGTTTGTT-GATGTT
* * * * * *
94276359 TAAATTTAATTTAATCTATATTATATATAGTTTGAATTTAAAAATTTCGTGCACTAATTTTATCC
1 TAAATTTAATTTAGTCTATATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
*
94276424 ATCTGTTTGTAGTTTGTTGGGTGTT
66 ATCTGTTTGTAGTTTGTT-GATGTT
* * *
94276449 TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAATTTAAAATTTTCATATATTAATTTTACCC
1 TAAATTTAATTTAGTCTATATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
94276514 ATCTGTTTGTAGTTTGTTGATTGTT
66 ATCTGTTTGTAGTTTGTTGA-TGTT
** * * * * *
94276539 TAAATTTAATTTAGTGAATATTAT-TTTTGTTTGAATTTTATATTTTTTGTGTATTAAT
1 TAAATTTAATTTAGTCTATATTATATGTAGTTTGAA-TTTAAAATTTTCGTGTATTAAT
94276597 ATTGTAGAAT
Statistics
Matches: 206, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
89 72 0.35
90 134 0.65
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (89 bp):
TAAATTTAATTTAGTCTATATTATATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTACCC
ATCTGTTTGTAGTTTGTTGATGTT
Found at i:94276612 original size:179 final size:175
Alignment explanation
Indices: 94276218--94276639 Score: 497
Period size: 179 Copynumber: 2.4 Consensus size: 175
94276208 AAGGTTTCAT
* * *
94276218 TTTTATATTTTCGTGTATTAATTTCTTAAAATGTTTGTATTTTTTGTATCTGTAAATTTAATTTA
1 TTTTATATTTTCGTGTATTAATTT-ATAAAATGTTTGTATTTATTGTAT-TTTAAATTTAATTTA
* *
94276283 GTCTGTATTATATGTAGCTTGAATTTAAAATTTTCGTGTATTAATTTTACCCATCTGTTGTAGTT
64 GTCTGTATTATATGTAGCTTGAATTTAAAATTTTCATATATTAATTTTACCCATCTGTTGTAGTT
*
94276348 TGTTGGATGTTTAAATTTAATTTAATCTATATTATATATAGTTTGAA
129 TGTTGGATGTTTAAATTTAATTTAATCAATATTATATATAGTTTGAA
* * * * * * ** * **
94276395 TTTAAAAATTTCGTGCACTAATTTTATCCATCTGTTTGTAGTTTGTTGGGTGTTTAAATTTAATT
1 TTTTATATTTTCGTGTATTAA-TTTAT-AAAATGTTTGTA-TTTATTGTAT-TTTAAATTTAATT
*
94276460 TAGTCTGTATTATATGTAGTTTGAATTTAAAATTTTCATATATTAATTTTACCCATCTGTTTGTA
62 TAGTCTGTATTATATGTAGCTTGAATTTAAAATTTTCATATATTAATTTTACCCATCTG-TTGTA
* * * *
94276525 GTTTGTT-GATTGTTTAAATTTAATTTAGTGAATATTAT-TTTTGTTTGAA
126 GTTTGTTGGA-TGTTTAAATTTAATTTAATCAATATTATATATAGTTTGAA
* * *
94276574 TTTTATATTTTTTGTGTATTAATATTGTAGAATGTTTGTATTTTATTGTATTTGTAAATTTAATT
1 TTTTATA-TTTTCGTGTATTAAT-TTATAAAATGTTTGTA-TTTATTGTATTT-TAAATTTAATT
94276639 T
62 T
94276640 GTTGTGTACT
Statistics
Matches: 200, Mismatches: 37, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
177 17 0.09
178 14 0.07
179 119 0.60
180 50 0.25
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.55
Consensus pattern (175 bp):
TTTTATATTTTCGTGTATTAATTTATAAAATGTTTGTATTTATTGTATTTTAAATTTAATTTAGT
CTGTATTATATGTAGCTTGAATTTAAAATTTTCATATATTAATTTTACCCATCTGTTGTAGTTTG
TTGGATGTTTAAATTTAATTTAATCAATATTATATATAGTTTGAA
Found at i:94277255 original size:21 final size:19
Alignment explanation
Indices: 94277229--94277301 Score: 58
Period size: 21 Copynumber: 3.6 Consensus size: 19
94277219 GTGGAAATAA
94277229 ATTTAATTTTTTTCTCATTTC
1 ATTTAATTTTTTT-TC-TTTC
* *
94277250 ATTTAAATTATCTTTCTTTC
1 ATTT-AATTTTTTTTCTTTC
*
94277270 TATTTTAATTTATTTT-TTTC
1 -A-TTTAATTTTTTTTCTTTC
94277290 ATATTAATTTTT
1 AT-TTAATTTTT
94277302 CTCTCATTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
18 1 0.02
19 9 0.21
20 8 0.19
21 14 0.33
22 10 0.24
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTAATTTTTTTTCTTTC
Found at i:94277276 original size:22 final size:21
Alignment explanation
Indices: 94277251--94277294 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
94277241 TCTCATTTCA
94277251 TTTAAATTATCTTTCTTTC-TAT
1 TTTAAATTAT-TTT-TTTCATAT
*
94277273 TTTAATTTATTTTTTTCATAT
1 TTTAAATTATTTTTTTCATAT
94277294 T
1 T
94277295 AATTTTTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 7 0.35
22 9 0.45
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTAAATTATTTTTTTCATAT
Found at i:94277301 original size:15 final size:14
Alignment explanation
Indices: 94277272--94277328 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
94277262 TTTCTTTCTA
*
94277272 TTTTAATTT-ATTT
1 TTTTCATTTAATTT
94277285 TTTTCATATTAATTT
1 TTTTCAT-TTAATTT
94277300 TTCTCTCATTGTAATTT
1 TT-T-TCATT-TAATTT
*
94277317 ATTTCATTTAAT
1 TTTTCATTTAAT
94277329 GTGTTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
13 6 0.16
14 6 0.16
15 11 0.30
16 3 0.08
17 11 0.30
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.65
Consensus pattern (14 bp):
TTTTCATTTAATTT
Found at i:94277363 original size:22 final size:22
Alignment explanation
Indices: 94277338--94277407 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
94277328 TGTGTTTTAA
*
94277338 ATTAAATATTTATGTATATTCT
1 ATTAAATATTTATGTATATTAT
* * * *
94277360 ATTATAAT-TTAATGTGTTTTAA
1 ATTA-AATATTTATGTATATTAT
* * *
94277382 AATAAATATGTATGTATATTGT
1 ATTAAATATTTATGTATATTAT
94277404 ATTA
1 ATTA
94277408 TAATTTAATG
Statistics
Matches: 33, Mismatches: 13, Indels: 4
0.66 0.26 0.08
Matches are distributed among these distances:
21 3 0.09
22 27 0.82
23 3 0.09
ACGTcount: A:0.39, C:0.01, G:0.09, T:0.51
Consensus pattern (22 bp):
ATTAAATATTTATGTATATTAT
Found at i:94277370 original size:44 final size:44
Alignment explanation
Indices: 94277322--94277429 Score: 180
Period size: 44 Copynumber: 2.5 Consensus size: 44
94277312 AATTTATTTC
*
94277322 ATTTAATGTGTTTTAAATTAAATATTTATGTATATTCTATTATA
1 ATTTAATGTGTTTTAAATTAAATATGTATGTATATTCTATTATA
* *
94277366 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAATTAAATATGTATGTATATTCTATTATA
*
94277410 ATTTAATGTGCTTTAAATTA
1 ATTTAATGTGTTTTAAATTA
94277430 GGAATAAGAA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.52
Consensus pattern (44 bp):
ATTTAATGTGTTTTAAATTAAATATGTATGTATATTCTATTATA
Found at i:94281055 original size:20 final size:20
Alignment explanation
Indices: 94281032--94281092 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
94281022 AGTGCTAACG
94281032 GAAGCCCATAGGGTTGAACA
1 GAAGCCCATAGGGTTGAACA
** * *
94281052 GAAGCTTATAGGAGCTGAACG
1 GAAGCCCATAGG-GTTGAACA
* *
94281073 GAAACCCACAGGGTTGAACA
1 GAAGCCCATAGGGTTGAACA
94281093 TAAACTCATA
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.36, C:0.20, G:0.30, T:0.15
Consensus pattern (20 bp):
GAAGCCCATAGGGTTGAACA
Found at i:94281056 original size:40 final size:41
Alignment explanation
Indices: 94281006--94281118 Score: 111
Period size: 41 Copynumber: 2.8 Consensus size: 41
94280996 GCCTGATAGC
* * * *
94281006 TGAATAGAAGCACATAAGTGCT-AACGGAAGCCCATAGGGT
1 TGAACAGAAGCACATAAGAGCTGAACGGAAACCCACAGGGT
** *
94281046 TGAACAGAAGCTTATAGGAGCTGAACGGAAACCCACAGGGT
1 TGAACAGAAGCACATAAGAGCTGAACGGAAACCCACAGGGT
* * * * *
94281087 TGAACATAAACTCATATGAGTTGAACGGAAAC
1 TGAACAGAAGCACATAAGAGCTGAACGGAAAC
94281119 TCATAAGGGT
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
40 17 0.28
41 43 0.72
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.18
Consensus pattern (41 bp):
TGAACAGAAGCACATAAGAGCTGAACGGAAACCCACAGGGT
Found at i:94281074 original size:41 final size:42
Alignment explanation
Indices: 94281011--94281201 Score: 140
Period size: 42 Copynumber: 4.6 Consensus size: 42
94281001 ATAGCTGAAT
* * * * *
94281011 AGAAGCACATAAGTGCT-AACGGAAGCCCAT-AGGGTTGAAC
1 AGAAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAAC
* * * * * *
94281051 AGAAGCTTATAGGAGCTGAACGGAAACCCA-CAGGGTTGAAC
1 AGAAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAAC
* * * * * * *
94281092 ATAAACTCATATGAGTTGAACGGAAACTCATAAGGGTTAAAC
1 AGAAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAAC
*
94281134 TA-AAGCTCAAAAAAGCTAAAC-GAGAACCCATAAGGGTTAAAC
1 -AGAAGCTCAAAAGAGCTAAACGGA-AACCCATAAGGGTTAAAC
* *
94281176 TGAAGCTTAAAAGAGCTAAACGGAAA
1 AGAAGCTCAAAAGAGCTAAACGGAAA
94281202 GCAAACATGA
Statistics
Matches: 121, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
40 13 0.11
41 47 0.39
42 58 0.48
43 3 0.02
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
AGAAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAAC
Found at i:94281142 original size:21 final size:21
Alignment explanation
Indices: 94281118--94281182 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
94281108 TGAACGGAAA
94281118 CTCATAAGGGTTAAACTAAAG
1 CTCATAAGGGTTAAACTAAAG
* ** * *
94281139 CTCAAAAAAGCTAAACGAGAA-
1 CTCATAAGGGTTAAACTA-AAG
* *
94281160 CCCATAAGGGTTAAACTGAAG
1 CTCATAAGGGTTAAACTAAAG
94281181 CT
1 CT
94281183 TAAAAGAGCT
Statistics
Matches: 29, Mismatches: 13, Indels: 4
0.63 0.28 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (21 bp):
CTCATAAGGGTTAAACTAAAG
Found at i:94283625 original size:122 final size:118
Alignment explanation
Indices: 94283438--94283729 Score: 401
Period size: 123 Copynumber: 2.5 Consensus size: 118
94283428 GCTGGCCATT
* * *
94283438 AGTGTCCCAAAGT-AAAAAAAATTACATTGGGA-CCAAAAAATATACTTGGTGCCAACTATTTAC
1 AGTGTCCCAAAGTAAAAAAAAATTACATTGGGACCCAAAAAATGTACTTGGTGTCAACCATTTAC
* * * * * *
94283501 TGGCCAGCATTCAAA-ATTTTTTTCTTACTTTGGGATACTGGTGTCGGCTATT
66 TGGCCAGCAATCAAATATTTTTTTCTTACTTTGGGACACTAGTATCGACTATG
*
94283553 AGTGTCCCAAAGTAAAAAAAAAAAAAATTATATTGGGACCCAAAAAATGTACTTGGTGTCAACCA
1 AGTGTCCCAAAGT-----AAAAAAAAATTACATTGGGACCCAAAAAATGTACTTGGTGTCAACCA
* *
94283618 TTTACTGGCTAGCAATCAAATTTTTTTTTCTTACTTTGGGACACTAGTATCGACTATG
61 TTTACTGGCCAGCAATCAAATATTTTTTTCTTACTTTGGGACACTAGTATCGACTATG
*
94283676 AGTGTCCCAAAGTAAAAAAAAATTACATTAGGACCCAAAAAATGTACTTGGTGT
1 AGTGTCCCAAAGTAAAAAAAAATTACATTGGGACCCAAAAAATGTACTTGGTGT
94283730 GCTGACCATC
Statistics
Matches: 155, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
115 13 0.08
118 39 0.25
121 18 0.12
122 41 0.26
123 44 0.28
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (118 bp):
AGTGTCCCAAAGTAAAAAAAAATTACATTGGGACCCAAAAAATGTACTTGGTGTCAACCATTTAC
TGGCCAGCAATCAAATATTTTTTTCTTACTTTGGGACACTAGTATCGACTATG
Found at i:94288308 original size:15 final size:15
Alignment explanation
Indices: 94288288--94288319 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
94288278 CATGAAAATA
94288288 AAATATTTCCGAACG
1 AAATATTTCCGAACG
94288303 AAATATTTCCGAACG
1 AAATATTTCCGAACG
94288318 AA
1 AA
94288320 CTGTTGGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (15 bp):
AAATATTTCCGAACG
Found at i:94310647 original size:40 final size:40
Alignment explanation
Indices: 94310602--94310731 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
94310592 CGGAATACAA
94310602 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
94310642 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
94310682 CTGGATGTAGCCACTAGTAC-AATTACCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
94310722 CCGGATATAA
1 CCGGATATAA
94310732 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 3 0.04
40 71 0.96
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:94314092 original size:12 final size:12
Alignment explanation
Indices: 94314075--94314099 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94314065 GTAGTGAAAG
94314075 AATTATGGTGTA
1 AATTATGGTGTA
94314087 AATTATGGTGTA
1 AATTATGGTGTA
94314099 A
1 A
94314100 CCAACTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (12 bp):
AATTATGGTGTA
Found at i:94317225 original size:21 final size:21
Alignment explanation
Indices: 94317200--94317264 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
94317190 TAGCCTTCGG
94317200 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
* * *
94317221 GCTTCAG-TTAGC-CTT-CGG
1 GCTTCCGTTTAGCACTTATGT
94317239 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
94317260 GCTTC
1 GCTTC
94317265 AGTTAGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
20 8 0.23
21 12 0.34
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:94317278 original size:39 final size:39
Alignment explanation
Indices: 94317182--94317270 Score: 178
Period size: 39 Copynumber: 2.3 Consensus size: 39
94317172 GCTCTGATGA
94317182 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
94317221 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
94317260 GCTTCAGTTAG
1 GCTTCAGTTAG
94317271 ATTTCGGGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.13, C:0.25, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:94322868 original size:70 final size:70
Alignment explanation
Indices: 94322791--94323361 Score: 451
Period size: 70 Copynumber: 8.2 Consensus size: 70
94322781 GTGCTAAGTG
* * * *
94322791 TTTTGGAGACTGCGGTATTGAACCTGCAAGCCTTAAGATACCAACTGGGAGTGTAGGCTCGCACT
1 TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
*
94322856 AACTG
66 AACTA
* * * * * * * * *
94322861 TTTTGGAGGTTGTGATATTGAACCAGCAAGCCTTAAAATACCAGTTGGGAGCATAGGCTTGCACT
1 TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
94322926 AACTA
66 AACTA
* * * * * *
94322931 TTTTGAAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTGGGAGCATAAGCTCGCGCT
1 TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
94322996 AACTA
66 AACTA
* * * * * * * ** * * **
94323001 TTTTGTAGGTTGCGGTATTGAACTTGTGTGCCTTAGGATATCAATTGGGAACGTAGCCTCGTGCT
1 TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
94323066 AACTA
66 AACTA
* * * * * * *
94323071 TTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAGGATACCAGCTGAGAGCGTAAGCTCGCATT
1 TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
*
94323136 AACTG
66 AACTA
** * ** ****
94323141 TTTTGGAGGCTGCGGTATTGAACCTATGAGCCTTAAGATATCAGCTGGGAGCGTAAACTCATGTT
1 TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
*
94323206 AACAA
66 AACTA
* * * * * * * * * * **
94323211 TTTTGGAGGCTACGGTATTAAACATGCTAGCCTTAGGATATCAGCTAGGAGCATAGGTTGGCGTT
1 TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
94323276 AACTA
66 AACTA
* * * * * * * * * * *
94323281 TTTTAGAGGCTG-GCGTATTAAACCTGCAAGGCTTAGGATATCAGCTAGGAGAGTAGGTTCACGC
1 TTTTGGAGGCTGCG-GTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCAC
*
94323345 TAACTG
65 TAACTA
94323351 TTTTGGAGGCT
1 TTTTGGAGGCT
94323362 ATGTGTAACA
Statistics
Matches: 402, Mismatches: 98, Indels: 2
0.80 0.20 0.00
Matches are distributed among these distances:
69 1 0.00
70 401 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (70 bp):
TTTTGGAGGCTGCGGTATTGAACCTGCGAGCCTTAAGATACCAGCTGGGAGCGTAGGCTCGCACT
AACTA
Found at i:94323174 original size:140 final size:139
Alignment explanation
Indices: 94322758--94323262 Score: 501
Period size: 140 Copynumber: 3.6 Consensus size: 139
94322748 AGCCTTTATA
* * * * *
94322758 ATATCAGTTGGGAACGTAAGCACGTGCTAAGTGTTTTGGAGACTGCGGTATTGAACCTGCAAGCC
1 ATATCAGTTGGGAACGT-AGCTCGTGCTAACTATTTTGGAGGCTGCGGTATTGAACCTGCGAGCC
* * * * *
94322823 TTAAGATACCAACTGGGAGTGTAGGCTCGCACTAACTGTTTTGGAGGTTGTGATATTGAACC-A-
65 TTAAGATACCAGCTGGGAGCGTAAGCTCGCACTAACTGTTTTGGAGGTTGCGGTATTGAACCTAT
*
94322886 GCAAGCCTTAAA
130 G--AGCCTTAAG
* * * * ** * * *
94322898 ATACCAGTTGGGAGCATAGGCTTGCACTAACTATTTTGAAGGCTGCGATATTGAACCTACGAGCC
1 ATATCAGTTGGGAACGTA-GCTCGTGCTAACTATTTTGGAGGCTGCGGTATTGAACCTGCGAGCC
* * * * * *
94322963 TTAAGATACCAGCTGGGAGCATAAGCTCGCGCTAACTATTTTGTAGGTTGCGGTATTGAACTTGT
65 TTAAGATACCAGCTGGGAGCGTAAGCTCGCACTAACTGTTTTGGAGGTTGCGGTATTGAACCTAT
* *
94323028 GTGCCTTAGG
130 GAGCCTTAAG
* * * *
94323038 ATATCAATTGGGAACGTAGCCTCGTGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCC
1 ATATCAGTTGGGAACGTAG-CTCGTGCTAACTATTTTGGAGGCTGCGGTATTGAACCTGCGAGCC
* * * *
94323103 TTAGGATACCAGCTGAGAGCGTAAGCTCGCATTAACTGTTTTGGAGGCTGCGGTATTGAACCTAT
65 TTAAGATACCAGCTGGGAGCGTAAGCTCGCACTAACTGTTTTGGAGGTTGCGGTATTGAACCTAT
94323168 GAGCCTTAAG
130 GAGCCTTAAG
* * * * * * * * * *
94323178 ATATCAGCTGGGAGCGTAAACTCATGTTAACAATTTTGGAGGCTACGGTATTAAACATGCTAGCC
1 ATATCAGTTGGGAACGT-AGCTCGTGCTAACTATTTTGGAGGCTGCGGTATTGAACCTGCGAGCC
* * *
94323243 TTAGGATATCAGCTAGGAGC
65 TTAAGATACCAGCTGGGAGC
94323263 ATAGGTTGGC
Statistics
Matches: 291, Mismatches: 69, Indels: 10
0.79 0.19 0.03
Matches are distributed among these distances:
139 2 0.01
140 287 0.99
141 1 0.00
142 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (139 bp):
ATATCAGTTGGGAACGTAGCTCGTGCTAACTATTTTGGAGGCTGCGGTATTGAACCTGCGAGCCT
TAAGATACCAGCTGGGAGCGTAAGCTCGCACTAACTGTTTTGGAGGTTGCGGTATTGAACCTATG
AGCCTTAAG
Found at i:94323229 original size:210 final size:209
Alignment explanation
Indices: 94322791--94323253 Score: 512
Period size: 210 Copynumber: 2.2 Consensus size: 209
94322781 GTGCTAAGTG
* * * * * ** *
94322791 TTTTGGAGACTGCGGTATTGAACCTGCAAGCCTTAAGATACCAACTGGGAGTGTAGGCTCGCACT
1 TTTTGGAGGCTGCGGTATTGAACATG-TAGCCTTAGGATATCAACTGGGAACGTAGCCTCGCACT
* * * * * * *
94322856 AACTGTTTTGGAGGTTGTGATATTGAACCAGCAAGCCTTAAAATACCAGTTGGGAGCATAGGCTT
65 AACTATTTTAGAGGCTGTGATATTGAACCAGCAAGCCTTAAAATACCAGCTGAGAGCATAAGCTC
94322921 GCACTAACTATTTTGAAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTGGGAGCATA
130 GCACTAACTATTTTGAAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTGGGAGCATA
* * *
94322986 AGCTCGCGCTAACTA
195 AACTCACGCTAACAA
* * * * * **
94323001 TTTTGTAGGTTGCGGTATTGAACTTGTGTGCCTTAGGATATCAATTGGGAACGTAGCCTCGTGCT
1 TTTTGGAGGCTGCGGTATTGAACATGT-AGCCTTAGGATATCAACTGGGAACGTAGCCTCGCACT
* ** * ** *
94323066 AACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAGGATACCAGCTGAGAGCGTAAGCTC
65 AACTATTTTAGAGGCTGTGATATTGAACCAGCAAGCCTTAAAATACCAGCTGAGAGCATAAGCTC
* * * * * * *
94323131 GCATTAACTGTTTTGGAGGCTGCGGTATTGAACCTATGAGCCTTAAGATATCAGCTGGGAGCGTA
130 GCACTAACTATTTTGAAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTGGGAGCATA
* *
94323196 AACTCATGTTAACAA
195 AACTCACGCTAACAA
* *
94323211 TTTTGGAGGCTACGGTATTAAACATGCTAGCCTTAGGATATCA
1 TTTTGGAGGCTGCGGTATTGAACATG-TAGCCTTAGGATATCA
94323254 GCTAGGAGCA
Statistics
Matches: 205, Mismatches: 46, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
210 204 1.00
211 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (209 bp):
TTTTGGAGGCTGCGGTATTGAACATGTAGCCTTAGGATATCAACTGGGAACGTAGCCTCGCACTA
ACTATTTTAGAGGCTGTGATATTGAACCAGCAAGCCTTAAAATACCAGCTGAGAGCATAAGCTCG
CACTAACTATTTTGAAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTGGGAGCATAA
ACTCACGCTAACAA
Found at i:94323281 original size:210 final size:210
Alignment explanation
Indices: 94322848--94323361 Score: 530
Period size: 210 Copynumber: 2.4 Consensus size: 210
94322838 GGAGTGTAGG
* * * * * * ** * *
94322848 CTCGCACTAACTGTTTTGGAGGTTGTGATATTGAACCAGCAAGCCTTAAAATACCAGTTGGGAGC
1 CTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACCTGCAAGCCTTAGGATACCAGCTGAGAGC
* * * *
94322913 ATAGGCTTGCACTAACTATTTTGAAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTG
66 GTAGGCTCGCACTAACTGTTTTGGAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTG
* * * * * * * * *
94322978 GGAGCATAAGCTCGCGCTAACTATTTTGTAGGTTGCGGTATTGAACTTGTGTGCCTTAGGATATC
131 GGAGCATAAACTCACGCTAACAATTTTGGAGGCTACGGTATTAAACATGTGAGCCTTAGGATATC
* * *
94323043 AATTGGGAACGTAGC
196 AACTAGGAACATAGC
* * *
94323058 CTCGTGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAGGATACCAGCTGAGAGC
1 CTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACCTGCAAGCCTTAGGATACCAGCTGAGAGC
* * * * *
94323123 GTAAGCTCGCATTAACTGTTTTGGAGGCTGCGGTATTGAACCTATGAGCCTTAAGATATCAGCTG
66 GTAGGCTCGCACTAACTGTTTTGGAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTG
* * *
94323188 GGAGCGTAAACTCATGTTAACAATTTTGGAGGCTACGGTATTAAACATGCT-AGCCTTAGGATAT
131 GGAGCATAAACTCACGCTAACAATTTTGGAGGCTACGGTATTAAACATG-TGAGCCTTAGGATAT
* * *
94323252 CAGCTAGGAGCATAGG
195 CAACTAGGAACATAGC
* * * * * *
94323268 TTGGCGTTAACTATTTTAGAGGCTG-GCGTATTAAACCTGCAAGGCTTAGGATATCAGCT-AGGA
1 CTCGCGCTAACTATTTTAGAGGCTGTG-GTATTGAACCTGCAAGCCTTAGGATACCAGCTGA-GA
* * * *
94323331 GAGTAGGTTCACGCTAACTGTTTTGGAGGCT
64 GCGTAGGCTCGCACTAACTGTTTTGGAGGCT
94323362 ATGTGTAACA
Statistics
Matches: 246, Mismatches: 55, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
209 2 0.01
210 243 0.99
211 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (210 bp):
CTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACCTGCAAGCCTTAGGATACCAGCTGAGAGC
GTAGGCTCGCACTAACTGTTTTGGAGGCTGCGATATTGAACCTACGAGCCTTAAGATACCAGCTG
GGAGCATAAACTCACGCTAACAATTTTGGAGGCTACGGTATTAAACATGTGAGCCTTAGGATATC
AACTAGGAACATAGC
Found at i:94324698 original size:40 final size:40
Alignment explanation
Indices: 94324649--94324790 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
94324639 CATATAGGTA
*
94324649 CAATTAGGGGTATCGAAGTACAAACAACGGCACGTATGTG
1 CAATCAGGGGTATCGAAGTACAAACAACGGCACGTATGTG
* * * * * * * *
94324689 TAATCAGGGGTACCGAAGTATAAATAAGGGTACATATATG
1 CAATCAGGGGTATCGAAGTACAAACAACGGCACGTATGTG
* * ** *
94324729 CAATCAGGGTTA-CTAAAGTACAAACAGTGACACGTATGTG
1 CAATCAGGGGTATC-GAAGTACAAACAACGGCACGTATGTG
* *
94324769 CAATCAAGGCTATCGAAGTACA
1 CAATCAGGGGTATCGAAGTACA
94324791 GTAATTTTCT
Statistics
Matches: 77, Mismatches: 23, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
39 1 0.01
40 75 0.97
41 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (40 bp):
CAATCAGGGGTATCGAAGTACAAACAACGGCACGTATGTG
Found at i:94326110 original size:70 final size:70
Alignment explanation
Indices: 94325910--94326145 Score: 267
Period size: 70 Copynumber: 3.4 Consensus size: 70
94325900 TTACACTATA
* * * ***
94325910 GTATTGAACTTGCGAGCCTTAGGATATCAGTTAGGAGCGTAGGCTCACGCTAACTATTTTTTTGG
1 GTATTGAACCTGCGAGCCTTAGGATATCAGTTGGGAGCGTAGGCTCACACTAACTATTTTAGAGG
* *
94325975 ATGCA
66 TTGCG
* * * * *
94325980 GTATTGAACTTGCGAG-CTTCAGGATAGCGGTTGGGAGCATAGGCTCGCACTAACTATTTTAGAG
1 GTATTGAACCTGCGAGCCTT-AGGATATCAGTTGGGAGCGTAGGCTCACACTAACTATTTTAGAG
*
94326044 GTTGTG
65 GTTGCG
* * * *
94326050 GTATTGAACCTACGAGCCTTAGGATATTAGCTGGGAGCGTAGGTTCACACTAACTATTTTAGAGG
1 GTATTGAACCTGCGAGCCTTAGGATATCAGTTGGGAGCGTAGGCTCACACTAACTATTTTAGAGG
*
94326115 TTACG
66 TTGCG
* *
94326120 GTATTGAACCTTCGAGCCTTAAGATA
1 GTATTGAACCTGCGAGCCTTAGGATA
94326146 CCAACTGAGA
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
69 3 0.02
70 133 0.96
71 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (70 bp):
GTATTGAACCTGCGAGCCTTAGGATATCAGTTGGGAGCGTAGGCTCACACTAACTATTTTAGAGG
TTGCG
Found at i:94328504 original size:40 final size:40
Alignment explanation
Indices: 94328398--94328587 Score: 305
Period size: 39 Copynumber: 4.8 Consensus size: 40
94328388 CGGATGATAA
94328398 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
94328438 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
94328477 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
94328517 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
94328556 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
94328588 AGCTATATCC
Statistics
Matches: 140, Mismatches: 7, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 72 0.51
40 67 0.48
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:94328529 original size:79 final size:79
Alignment explanation
Indices: 94328394--94328587 Score: 311
Period size: 79 Copynumber: 2.5 Consensus size: 79
94328384 TATTCGGATG
* *
94328394 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGT-CCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCA
94328458 TTTGTGCGAGTTACT
66 -TTGTGCGAGTTACT
*
94328473 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGC
94328537 ATTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
* *
94328552 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
94328588 AGCTATATCC
Statistics
Matches: 106, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
78 1 0.01
79 95 0.90
80 10 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCA
TTGTGCGAGTTACT
Found at i:94336476 original size:40 final size:40
Alignment explanation
Indices: 94336421--94336652 Score: 367
Period size: 40 Copynumber: 5.8 Consensus size: 40
94336411 CGGATGATAA
*
94336421 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
94336461 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
94336501 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
94336541 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
94336581 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
94336621 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
94336653 AGCTATATCC
Statistics
Matches: 177, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 176 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:94338256 original size:19 final size:21
Alignment explanation
Indices: 94338232--94338270 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
94338222 ATCCTATCAT
94338232 GAATTT-TTA-CATGATAATA
1 GAATTTATTAGCATGATAATA
*
94338251 GAATTTATTAGCATGCTAAT
1 GAATTTATTAGCATGATAAT
94338271 CACATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 3 0.18
21 8 0.47
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (21 bp):
GAATTTATTAGCATGATAATA
Found at i:94340389 original size:12 final size:13
Alignment explanation
Indices: 94340361--94340393 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
94340351 TTATTTCTTT
94340361 TTCTCCATCTACC
1 TTCTCCATCTACC
*
94340374 TTCTCC-TCTTCC
1 TTCTCCATCTACC
94340386 TTCTCCAT
1 TTCTCCAT
94340394 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:94341523 original size:28 final size:28
Alignment explanation
Indices: 94341462--94341526 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
94341452 ATTTACTAGA
* *
94341462 ATACCCTTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* * *
94341490 AGACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
94341518 ATACCCCTA
1 ATACCCCTA
94341527 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:94341690 original size:27 final size:27
Alignment explanation
Indices: 94341632--94341721 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
94341622 AGGAAGCGTC
94341632 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
94341660 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
94341687 CTGGTGGCACTGCCATAAAATATCTGTAT
1 CTGGTGGCACTGCCA-CAAATATCTGT-T
94341716 CTGGTG
1 CTGGTG
94341722 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:94341740 original size:55 final size:56
Alignment explanation
Indices: 94341632--94341746 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
94341622 AGGAAGCGTC
* *
94341632 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
94341687 CTGGTGGC-ACTGCCATAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
94341743 CTGG
1 CTGG
94341747 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:94342194 original size:19 final size:19
Alignment explanation
Indices: 94342172--94342210 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
94342162 TTTAATTATT
* *
94342172 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
94342191 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
94342210 T
1 T
94342211 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:94342874 original size:46 final size:44
Alignment explanation
Indices: 94342790--94342957 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 44
94342780 GTAAGGTACT
94342790 GATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCG-AGGCC
* * *
94342836 GATGCATGTCTCAAACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCGAGGCC
* * * *
94342882 AATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTC-ACTGCC
1 GATGCATGTCCCAGACATGTCTTACACT-G-ACACATCTCGA-GGCC
*
94342928 GATGCCATGTACCAGACATGGTCTTACACT
1 GATG-CATGTCCCAGACAT-GTCTTACACT
94342958 ATCTCTCATA
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 12 0.12
45 14 0.14
46 51 0.50
47 14 0.14
48 11 0.11
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGACACATCTCGAGGCC
Found at i:94345600 original size:2 final size:2
Alignment explanation
Indices: 94345593--94345620 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
94345583 CATATACCAA
94345593 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94345621 CAAGATATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94346296 original size:23 final size:23
Alignment explanation
Indices: 94346270--94346391 Score: 104
Period size: 23 Copynumber: 5.2 Consensus size: 23
94346260 TTTCGAGCCA
*
94346270 TGAT-CGGTAAGCTCCTCTTGAGC
1 TGATACGGTAAGCT-CTATTGAGC
* *
94346293 TGATAACAGTAAGCTCTAATGAGC
1 TGAT-ACGGTAAGCTCTATTGAGC
* *
94346317 TGATATGGTAAGCTCTATCGAGC
1 TGATACGGTAAGCTCTATTGAGC
* *
94346340 TGA-ACCGGTAAGCTCCAATGAGC
1 TGATA-CGGTAAGCTCTATTGAGC
* * *
94346363 TGAAAACAGTAAGCTCTTTTGAGC
1 TG-ATACGGTAAGCTCTATTGAGC
94346387 TGATA
1 TGATA
94346392 TATCGGTAAG
Statistics
Matches: 78, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
22 1 0.01
23 40 0.51
24 28 0.36
25 9 0.12
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (23 bp):
TGATACGGTAAGCTCTATTGAGC
Found at i:94346319 original size:24 final size:24
Alignment explanation
Indices: 94346288--94346391 Score: 106
Period size: 23 Copynumber: 4.4 Consensus size: 24
94346278 AAGCTCCTCT
94346288 TGAGCTGATAACAGTAAGCTCTAA
1 TGAGCTGATAACAGTAAGCTCTAA
**
94346312 TGAGCTGAT-ATGGTAAGCTCT-A
1 TGAGCTGATAACAGTAAGCTCTAA
* * *
94346334 TCGAGCTGA-ACCGGTAAGCTCCAA
1 T-GAGCTGATAACAGTAAGCTCTAA
* **
94346358 TGAGCTGAAAACAGTAAGCTCTTT
1 TGAGCTGATAACAGTAAGCTCTAA
94346382 TGAGCTGATA
1 TGAGCTGATA
94346392 TATCGGTAAG
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
22 2 0.03
23 33 0.51
24 30 0.46
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (24 bp):
TGAGCTGATAACAGTAAGCTCTAA
Found at i:94348310 original size:16 final size:16
Alignment explanation
Indices: 94348291--94348323 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
94348281 CATGATTGTA
94348291 AATAAAAATAAAAAAT
1 AATAAAAATAAAAAAT
*
94348307 AATAATAATAAAAAAT
1 AATAAAAATAAAAAAT
94348323 A
1 A
94348324 TTTAGATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AATAAAAATAAAAAAT
Found at i:94350864 original size:26 final size:26
Alignment explanation
Indices: 94350802--94350866 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 26
94350792 TTAGGTTGAG
*
94350802 AAAATATTTTAATTGAGAAAATTAATTA
1 AAAATATTTTAATT--GAAAATTAAATA
*
94350830 AAAATTATTTTAATT-AATATTAAATA
1 AAAA-TATTTTAATTGAAAATTAAATA
94350856 AATAATATTTT
1 AA-AATATTTT
94350867 GAGAATAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 17 0.52
27 2 0.06
28 4 0.12
29 10 0.30
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (26 bp):
AAAATATTTTAATTGAAAATTAAATA
Found at i:94350914 original size:18 final size:17
Alignment explanation
Indices: 94350882--94350918 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
94350872 TAAAAAATTT
*
94350882 ATTATTGAGTTGGTTAA
1 ATTATTGAATTGGTTAA
94350899 ATTATATGAATTGGTTAA
1 ATTAT-TGAATTGGTTAA
94350917 AT
1 AT
94350919 GTCCAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (17 bp):
ATTATTGAATTGGTTAA
Found at i:94352296 original size:3 final size:3
Alignment explanation
Indices: 94352288--94352328 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
94352278 TTTGATTCAC
* *
94352288 CAT CAT CAT CAC CAT CAT CAT CGT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
94352329 CTTTCTTGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.37, G:0.02, T:0.29
Consensus pattern (3 bp):
CAT
Found at i:94354055 original size:72 final size:72
Alignment explanation
Indices: 94353750--94354029 Score: 413
Period size: 72 Copynumber: 3.9 Consensus size: 72
94353740 ATAATTTAGT
* * * *
94353750 ATAAATAAGTAGAACATAAATTTAATATCCGAAAATCAAACATAAACAATTATTGAT--AACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
*
94353813 CTCTA-AGC
66 AT-TACA-C
* * * *
94353821 ATAAATAAGTAGACCATAAATTCAATATCCAAAGACCAAACATAAACAAATATTAATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
94353886 ATTACAC
66 ATTACAC
*
94353893 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
94353958 ATTACAC
66 ATTACAC
* *
94353965 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAATAACTATTGAGAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
94354030 TTTAGCATTG
Statistics
Matches: 190, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
71 50 0.26
72 132 0.69
73 8 0.04
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.23
Consensus pattern (72 bp):
ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
ATTACAC
Found at i:94354488 original size:18 final size:18
Alignment explanation
Indices: 94354461--94354544 Score: 123
Period size: 18 Copynumber: 4.7 Consensus size: 18
94354451 TCCATCAATT
94354461 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
94354479 TGAGCATCATTTGAAATG
1 TGAACATCATTTGAAATG
* *
94354497 TGAGCATTATTTGAAATG
1 TGAACATCATTTGAAATG
* *
94354515 TAAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
94354533 TGAACATCATTT
1 TGAACATCATTT
94354545 CTCACATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:94355695 original size:26 final size:26
Alignment explanation
Indices: 94355659--94355712 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
94355649 AATGCTAGAA
94355659 CATATACAAGCTAATACCAAGGTAAT
1 CATATACAAGCTAATACCAAGGTAAT
*
94355685 CATATACAAGCTAATACCAGGGTAAT
1 CATATACAAGCTAATACCAAGGTAAT
94355711 CA
1 CA
94355713 CGCACATAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.22
Consensus pattern (26 bp):
CATATACAAGCTAATACCAAGGTAAT
Found at i:94356367 original size:40 final size:41
Alignment explanation
Indices: 94356273--94356490 Score: 226
Period size: 41 Copynumber: 5.3 Consensus size: 41
94356263 TGTTTTAACA
* * * * * *
94356273 AAAACGCCGCTAAA-AACTGAGCAATAACTGCGTTTTTTGTT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCG-CTTTTGGT
* * * *
94356314 AAAACGCCACTAAA-AACAGAGCATTAGCGACACTTCTGGT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
*
94356354 AAAACGCCGCTAAAG-ACTAGAGCATTAGCGGCGCTTTTGTT
1 AAAACGCCGCTAAAGAAC-AGAGCATTAGCGGCGCTTTTGGT
* * * *
94356395 AAAATGCCGCTAAAGACCAGAGCATTAACGGCGCTTTTCGT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
* *
94356436 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTAGT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
* *
94356477 AAAATGCCACTAAA
1 AAAACGCCGCTAAA
94356491 AGTTATATAA
Statistics
Matches: 149, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
40 20 0.13
41 128 0.86
42 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (41 bp):
AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
Found at i:94356448 original size:82 final size:81
Alignment explanation
Indices: 94356273--94356491 Score: 271
Period size: 82 Copynumber: 2.7 Consensus size: 81
94356263 TGTTTTAACA
* * * * * *
94356273 AAAACGCCGCTAAAAACT-GAGCAATAACTGCGTTTTTTGTTAAAACGCCACTAAAAACAGAGCA
1 AAAACGCCGCTAAAGACTAGAGCATTAGCGGCG-CTTTTGTTAAAATGCCACTAAAAACAGAGCA
* *
94356337 TTAGCGACACTTCTGGT
65 TTAACGACACTTCTCGT
* *
94356354 AAAACGCCGCTAAAGACTAGAGCATTAGCGGCGCTTTTGTTAAAATGCCGCTAAAGACCAGAGCA
1 AAAACGCCGCTAAAGACTAGAGCATTAGCGGCGCTTTTGTTAAAATGCCACTAAA-AACAGAGCA
* * *
94356419 TTAACGGCGCTTTTCGT
65 TTAACGACACTTCTCGT
*
94356436 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTAG-TAAAATGCCACTAAAA
1 AAAACGCCGCTAAAGACTAGAGCATTAGCGGCGCTTTT-GTTAAAATGCCACTAAAA
94356492 GTTATATAAC
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
81 37 0.31
82 82 0.68
83 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (81 bp):
AAAACGCCGCTAAAGACTAGAGCATTAGCGGCGCTTTTGTTAAAATGCCACTAAAAACAGAGCAT
TAACGACACTTCTCGT
Found at i:94357535 original size:18 final size:19
Alignment explanation
Indices: 94357512--94357550 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
94357502 AGATCTTTTT
94357512 TATTTTT-TATCAAAATAA
1 TATTTTTATATCAAAATAA
*
94357530 TATTTTTATATGAAAATAA
1 TATTTTTATATCAAAATAA
94357549 TA
1 TA
94357551 AATATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
TATTTTTATATCAAAATAA
Found at i:94361884 original size:43 final size:44
Alignment explanation
Indices: 94361794--94361885 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 44
94361784 TGAGAAAAGT
* *
94361794 GCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAGGAAAAAGC
1 GCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAGCAAAAAAC
* **
94361838 GCCGTTAAAGGTCATGATC-TTAGCGGCGTTT-TTTCAAATAAAC
1 GCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAGCAAA-AAAC
94361881 GCCGC
1 GCCGC
94361886 AAGCTTTAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 4 0.10
43 19 0.46
44 18 0.44
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (44 bp):
GCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAGCAAAAAAC
Done.