Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 305 of 438
Found at i:95445965 original size:20 final size:19
Alignment explanation
Indices: 95445952--95445993 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
95445942 AAATTTTCAT
95445952 AATTTTAAAAAAATATATAA
1 AATTTTAAAAAAAT-TATAA
*
95445972 AATTTTAAAAAAATTAAAA
1 AATTTTAAAAAAATTATAA
95445991 AAT
1 AAT
95445994 CTAAATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTTTAAAAAAATTATAA
Found at i:95445983 original size:19 final size:19
Alignment explanation
Indices: 95445952--95446010 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 19
95445942 AAATTTTCAT
95445952 AATTTTAAAAAAATATATAA
1 AATTTT-AAAAAATATATAA
95445972 AATTTTAAAAAA-AT-TAAA
1 AATTTTAAAAAATATAT-AA
* * *
95445990 AAATCTAAATAATATATAA
1 AATTTTAAAAAATATATAA
95446009 AA
1 AA
95446011 AATTTAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 1 0.03
18 13 0.39
19 12 0.36
20 7 0.21
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
AATTTTAAAAAATATATAA
Found at i:95445990 original size:28 final size:29
Alignment explanation
Indices: 95445959--95446019 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
95445949 CATAATTTTA
*
95445959 AAAAAATATATAA-AAT-TTTAAAAAAATT
1 AAAAAATATA-AATAATATATAAAAAAATT
* *
95445987 AAAAAATCTAAATAATATATAAAAAATTT
1 AAAAAATATAAATAATATATAAAAAAATT
95446016 AAAA
1 AAAA
95446020 TTTTCAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.07
28 12 0.43
29 14 0.50
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (29 bp):
AAAAAATATAAATAATATATAAAAAAATT
Found at i:95446002 original size:48 final size:46
Alignment explanation
Indices: 95445894--95446029 Score: 116
Period size: 48 Copynumber: 2.9 Consensus size: 46
95445884 TTATAAAAAG
* * **
95445894 AAATCAAAATAATTTT-AAAAAATTCAAAAAATTTATAAAAAAAATTCC
1 AAATCTAAATAATTTTAAAAAAATT-ATAAAATTT-T-AAAAAAATTAA
* **
95445942 AAATTTTCATAATTTTAAAAAAATATATAAAATTTTAAAAAAATTAAA
1 AAATCTAAATAATTTTAAAAAAAT-TATAAAATTTTAAAAAAATT-AA
* *
95445990 AAATCTAAATAA-TATATAAAAAATT-TAAAATTTTCAAAAA
1 AAATCTAAATAATTTTA-AAAAAATTATAAAATTTTAAAAAA
95446030 TAATAAATTT
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
46 14 0.19
47 13 0.18
48 29 0.40
49 15 0.21
50 1 0.01
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (46 bp):
AAATCTAAATAATTTTAAAAAAATTATAAAATTTTAAAAAAATTAA
Found at i:95453682 original size:13 final size:13
Alignment explanation
Indices: 95453666--95453692 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
95453656 TTGAATATGG
95453666 AAATTAAATATAT
1 AAATTAAATATAT
95453679 AAATTAAATATAT
1 AAATTAAATATAT
95453692 A
1 A
95453693 TCCTAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATTAAATATAT
Found at i:95455692 original size:39 final size:39
Alignment explanation
Indices: 95455636--95455712 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
95455626 AGCCATGTCC
* *
95455636 TAAAACTTGTGTGAATTTAACATCTTAAATAAGCTTCAA
1 TAAAACTTGTATAAATTTAACATCTTAAATAAGCTTCAA
*
95455675 TAAAACTTGTATAAATTTAACATCTTGAATAAGCTTCA
1 TAAAACTTGTATAAATTTAACATCTTAAATAAGCTTCA
95455713 GCTTTCTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (39 bp):
TAAAACTTGTATAAATTTAACATCTTAAATAAGCTTCAA
Found at i:95457070 original size:46 final size:45
Alignment explanation
Indices: 95457020--95457189 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
95457010 TGGTTGAGCA
95457020 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
95457066 TCCGAACTCGTTGAGTTGAGTCCGAGCTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * **
95457111 CATCCGAACTCGTTGAGTTGATTCCAAGTTCACTTATGGATGAGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
95457159 CCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
95457190 CTAGGGGCGG
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.56
47 26 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:95459241 original size:15 final size:15
Alignment explanation
Indices: 95459221--95459278 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
95459211 ATTATAAAGT
*
95459221 TTAATTATTATTATG
1 TTAATTAATATTATG
*
95459236 TTAATTAATATTATA
1 TTAATTAATATTATG
* *
95459251 AT-ATTATTATTATG
1 TTAATTAATATTATG
95459265 TTAATTAATATTAT
1 TTAATTAATATTAT
95459279 AATGTAAATC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
14 11 0.31
15 24 0.69
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TTAATTAATATTATG
Found at i:95459261 original size:29 final size:29
Alignment explanation
Indices: 95459224--95459281 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
95459214 ATAAAGTTTA
95459224 ATTATTATTATGTTAATTAATATTATAAT
1 ATTATTATTATGTTAATTAATATTATAAT
95459253 ATTATTATTATGTTAATTAATATTATAAT
1 ATTATTATTATGTTAATTAATATTATAAT
95459282 GTAAATCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (29 bp):
ATTATTATTATGTTAATTAATATTATAAT
Found at i:95461638 original size:33 final size:33
Alignment explanation
Indices: 95461593--95461866 Score: 112
Period size: 33 Copynumber: 8.2 Consensus size: 33
95461583 TTATCTGTAG
95461593 GACCATAGTTGGGCTATGGCATTCTAATGATAA
1 GACCATAGTTGGGCTATGGCATTCTAATGATAA
* * *
95461626 GACCATAATTGGGTTATGG-A-ACT-ATGGACGTAA
1 GACCATAGTTGGGCTATGGCATTCTAAT-GA--TAA
* * * * *
95461659 GACCATGGTTGGACCATGGTAGTGTTTATATG-TAA
1 GACCATAGTTGGGCTATGGCA-T-TCTA-ATGATAA
* * *
95461694 GACCATAGCTGGGTTATGGCATTCTGATGATAA
1 GACCATAGTTGGGCTATGGCATTCTAATGATAA
** * * * * *
95461727 GACCATAACTGAGTTATGACACTCTGGATG-TAA
1 GACCATAGTTGGGCTATGGCATTCT-AATGATAA
* * * * * *
95461760 GACAATGGTTGGACCATGTCAGTGTTTATAT-ATAA
1 GACCATAGTTGGGCTATGGCA-T-TCTA-ATGATAA
* * * *
95461795 TACCATAGTTGGGCTATGACATTATGATGATAA
1 GACCATAGTTGGGCTATGGCATTCTAATGATAA
* * * *
95461828 GACCATAATTGGGTTATGGCACTATGAATG-TAA
1 GACCATAGTTGGGCTATGGCATTCT-AATGATAA
95461861 GACCAT
1 GACCAT
95461867 GGCAGGGCTA
Statistics
Matches: 176, Mismatches: 48, Indels: 34
0.68 0.19 0.13
Matches are distributed among these distances:
30 2 0.01
31 4 0.02
32 6 0.03
33 110 0.62
34 10 0.06
35 40 0.23
37 1 0.01
38 1 0.01
39 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (33 bp):
GACCATAGTTGGGCTATGGCATTCTAATGATAA
Found at i:95461730 original size:101 final size:101
Alignment explanation
Indices: 95461555--95461868 Score: 434
Period size: 101 Copynumber: 3.1 Consensus size: 101
95461545 AATTGACGGA
** * * *
95461555 TAAGACCATGGTTGGACCATGACAGTGTTTATCTGTAGGACCATAGTTGGGCTATGGCATTCTAA
1 TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATTCTGA
*
95461620 TGATAAGACCATAATTGGGTTATGGAACTATGGACG
66 TGATAAGACCATAATTGGGTTATGGAACTATGGATG
* *
95461656 TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGACCATAGCTGGGTTATGGCATTCTGA
1 TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATTCTGA
* * *
95461721 TGATAAGACCATAACTGAGTTAT-GACACTCTGGATG
66 TGATAAGACCATAATTGGGTTATGGA-ACTATGGATG
* * * * *
95461757 TAAGACAATGGTTGGACCAT-GTCAGTGTTTATATATAATACCATAGTTGGGCTATGACATTATG
1 TAAGACCATGGTTGGACCATGGT-AGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATTCTG
* *
95461821 ATGATAAGACCATAATTGGGTTATGGCACTATGAATG
65 ATGATAAGACCATAATTGGGTTATGGAACTATGGATG
95461858 TAAGACCATGG
1 TAAGACCATGG
95461869 CAGGGCTATG
Statistics
Matches: 186, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
100 4 0.02
101 181 0.97
102 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATTCTGA
TGATAAGACCATAATTGGGTTATGGAACTATGGATG
Found at i:95463867 original size:49 final size:48
Alignment explanation
Indices: 95463805--95463935 Score: 136
Period size: 49 Copynumber: 2.7 Consensus size: 48
95463795 TGTTGTGTGT
* *
95463805 CAGTGTAAGACCTGTCTGGAACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGAACATGGCATCGAC-CCGATAGATAAAAGC
* * * * * * * *
95463854 CAGTTTAAGACCTGTTTGGGACACGGCATCGGGCTCGATATATAAAAGT
1 CAGTGTAAGACCTGTCTGGAACATGGCATC-GACCCGATAGATAAAAGC
* *
95463903 TAGTGTAAGACCTGTCTAGAACATGGCATCGAC
1 CAGTGTAAGACCTGTCTGGAACATGGCATCGAC
95463936 TTTAATGTGC
Statistics
Matches: 64, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
48 2 0.03
49 60 0.94
50 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGAACATGGCATCGACCCGATAGATAAAAGC
Found at i:95470851 original size:34 final size:34
Alignment explanation
Indices: 95470813--95470879 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
95470803 GTATGCATAT
95470813 TGAATCTG-AGATGGGCTAAGGCCTAAACTGCATC
1 TGAATCTGTA-ATGGGCTAAGGCCTAAACTGCATC
* *
95470847 TGAATTTGTAATGGGCTTAGGCCTAAACTGCAT
1 TGAATCTGTAATGGGCTAAGGCCTAAACTGCAT
95470880 TTGACCGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (34 bp):
TGAATCTGTAATGGGCTAAGGCCTAAACTGCATC
Found at i:95473007 original size:22 final size:22
Alignment explanation
Indices: 95472982--95473047 Score: 82
Period size: 21 Copynumber: 3.0 Consensus size: 22
95472972 TATTTTATAA
95472982 TATTTTTTAAAATTTTAAATAT
1 TATTTTTTAAAATTTTAAATAT
*
95473004 TA-TTTTTGAAATTTTAAATA-
1 TATTTTTTAAAATTTTAAATAT
* *
95473024 TATTTTTTAATAATATAAAATAT
1 TATTTTTTAA-AATTTTAAATAT
95473047 T
1 T
95473048 TAAATATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 2 0.05
21 23 0.62
22 11 0.30
23 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TATTTTTTAAAATTTTAAATAT
Found at i:95473015 original size:21 final size:20
Alignment explanation
Indices: 95472973--95473030 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
95472963 TATTTGAAAT
95472973 ATTTTATAATAT-TTTTTAAA
1 ATTTTA-AATATATTTTTAAA
*
95472993 ATTTTAAATATTATTTTTGAA
1 ATTTTAAATA-TATTTTTAAA
95473014 ATTTTAAATATATTTTT
1 ATTTTAAATATATTTTT
95473031 TAATAATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 4 0.11
20 14 0.40
21 17 0.49
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTAAATATATTTTTAAA
Found at i:95473042 original size:21 final size:20
Alignment explanation
Indices: 95472981--95473048 Score: 75
Period size: 20 Copynumber: 3.3 Consensus size: 20
95472971 ATATTTTATA
95472981 ATATTTTTTAAAATTTTAAAT
1 ATATTTTTTAAAA-TTTAAAT
* *
95473002 ATTATTTTTGAAATTTTAAAT
1 A-TATTTTTTAAAATTTAAAT
*
95473023 ATATTTTTTAATAATATAAA-
1 ATATTTTTTAA-AATTTAAAT
95473043 ATATTT
1 ATATTT
95473049 AAATATTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 15 0.38
21 15 0.38
22 10 0.25
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (20 bp):
ATATTTTTTAAAATTTAAAT
Found at i:95473132 original size:11 final size:11
Alignment explanation
Indices: 95473088--95473139 Score: 58
Period size: 11 Copynumber: 5.0 Consensus size: 11
95473078 TTATTATTAG
95473088 TTTTATAATA-
1 TTTTATAATAT
95473098 TTTT-TAATA-
1 TTTTATAATAT
*
95473107 TTTT-TAATTT
1 TTTTATAATAT
95473117 GTTTTATAATAT
1 -TTTTATAATAT
95473129 TTTTATAATAT
1 TTTTATAATAT
95473140 ATTATTTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
9 13 0.35
10 4 0.11
11 15 0.41
12 5 0.14
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TTTTATAATAT
Found at i:95473144 original size:21 final size:20
Alignment explanation
Indices: 95473088--95473144 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
95473078 TTATTATTAG
*
95473088 TTTTATAATATTTTTAATAT
1 TTTTATAATATTTATAATAT
* *
95473108 TTTTA-ATTTGTTTTATAATAT
1 TTTTATA-AT-ATTTATAATAT
95473129 TTTTATAATATATTAT
1 TTTTATAATAT-TTAT
95473145 TTTTAAAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 7
0.70 0.12 0.17
Matches are distributed among these distances:
19 1 0.04
20 7 0.25
21 19 0.68
22 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTATAATATTTATAATAT
Found at i:95473223 original size:31 final size:27
Alignment explanation
Indices: 95473179--95473312 Score: 90
Period size: 31 Copynumber: 4.4 Consensus size: 27
95473169 TTATTATTTG
95473179 TTTTATAATATTTTAAATGTATATTTTAAATA
1 TTTTA-AA-ATTTTAAAT-TA-ATTTTAAA-A
95473211 TTTCTAAAATTTTAAATATAATTTTTATAAA
1 TTT-TAAAATTTTAAAT-TAA-TTTTA-AAA
*
95473242 TTATT-AATTTTTAAATTAATTTTAAATA
1 TT-TTAAAATTTTAAATTAATTTTAAA-A
*
95473270 TATTCAAACATTTTTTAAAATTAAATTTTAAAA
1 T-TTTAAA-A--TTTT-AAATT-AATTTTAAAA
95473303 TTTTAAAATT
1 TTTTAAAATT
95473313 AATATTTTAT
Statistics
Matches: 85, Mismatches: 5, Indels: 27
0.73 0.04 0.23
Matches are distributed among these distances:
27 2 0.02
28 8 0.09
29 8 0.09
30 11 0.13
31 21 0.25
32 17 0.20
33 9 0.11
34 9 0.11
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (27 bp):
TTTTAAAATTTTAAATTAATTTTAAAA
Found at i:95473224 original size:91 final size:88
Alignment explanation
Indices: 95473054--95473237 Score: 241
Period size: 91 Copynumber: 2.1 Consensus size: 88
95473044 TATTTAAATA
* *
95473054 TTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTTAATATTTTTAATTTGT
1 TTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATTTTTAATATGT
*
95473119 TTTATAATATTTTTATAATATATTAT
66 TCTATAATATTTTTA-AATATA--AT
*
95473145 TTTTAAAGATATGACCTTTCAAATTTATTATTTGTTTTATAATATTTTAAATGTATATTTTAAAT
1 TTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAA--TAT-TTTT-AAT
95473210 AT-TTCTA-AA-A-TTTTAAATATAAT
62 ATGTTCTATAATATTTTTAAATATAAT
95473233 TTTTA
1 TTTTA
95473238 TAAATTATTA
Statistics
Matches: 85, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
88 7 0.08
90 6 0.07
91 54 0.64
92 1 0.01
93 5 0.06
94 8 0.09
95 4 0.05
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (88 bp):
TTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATTTTTAATATGT
TCTATAATATTTTTAAATATAAT
Found at i:95473235 original size:12 final size:13
Alignment explanation
Indices: 95473220--95473271 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 13
95473210 ATTTCTAAAA
95473220 TTTTAAATATAATT
1 TTTTAAATATAA-T
95473234 TTTATAAATTATTAAT
1 TTT-TAAA-TA-TAAT
95473250 TTTTAAAT-TAA-
1 TTTTAAATATAAT
95473261 TTTTAAATATA
1 TTTTAAATATA
95473272 TTCAAACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
11 8 0.24
12 5 0.15
14 4 0.12
15 8 0.24
16 6 0.18
17 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTAAATATAAT
Found at i:95479384 original size:30 final size:30
Alignment explanation
Indices: 95479328--95479399 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
95479318 CTATGTATGG
* * * *
95479328 GTGATATGAATTTGAACCGCCCATGTCTGA
1 GTGATATGAACTTGAACCACCAATGTCCGA
* *
95479358 GTGATATGAACTTGAACCACTAATGTCCGG
1 GTGATATGAACTTGAACCACCAATGTCCGA
95479388 GTGATATGAACT
1 GTGATATGAACT
95479400 ACTCTGTGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (30 bp):
GTGATATGAACTTGAACCACCAATGTCCGA
Found at i:95482995 original size:18 final size:18
Alignment explanation
Indices: 95482950--95483008 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
95482940 AATATCATTT
* *
95482950 AGTAACAATCAATTTTTC
1 AGTAAAAATCAATTATTC
* ** *
95482968 GGTAGCAATCAGTTATTC
1 AGTAAAAATCAATTATTC
95482986 AGTAAAAATCAATTATTC
1 AGTAAAAATCAATTATTC
95483004 AGTAA
1 AGTAA
95483009 CAGCTAGTCG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.34
Consensus pattern (18 bp):
AGTAAAAATCAATTATTC
Found at i:95483902 original size:31 final size:31
Alignment explanation
Indices: 95483867--95483930 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95483857 CCTTTTCATG
95483867 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
95483898 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
95483929 TT
1 TT
95483931 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:95484227 original size:24 final size:24
Alignment explanation
Indices: 95484122--95484289 Score: 259
Period size: 24 Copynumber: 7.0 Consensus size: 24
95484112 GCTTTATCAT
* *
95484122 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
95484147 ATAACTGGGGCAAAAGCCCTTTTCA
1 ATAACTGGGGCATAAGCCCTTTT-G
95484172 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
95484195 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
95484219 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
95484243 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
95484267 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
95484290 TCACTTCCTC
Statistics
Matches: 137, Mismatches: 3, Indels: 7
0.93 0.02 0.05
Matches are distributed among these distances:
23 23 0.17
24 79 0.58
25 35 0.26
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:95484364 original size:20 final size:20
Alignment explanation
Indices: 95484339--95484399 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
95484329 TTATGATTAC
95484339 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
95484359 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
95484379 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
95484399 A
1 A
95484400 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:95484474 original size:25 final size:25
Alignment explanation
Indices: 95484442--95484489 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95484432 ATACATAAAC
* * *
95484442 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
95484467 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
95484490 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:95485781 original size:27 final size:27
Alignment explanation
Indices: 95485727--95486063 Score: 432
Period size: 27 Copynumber: 12.6 Consensus size: 27
95485717 GGGTATTTTA
* *
95485727 GTAATTTTGTAAATCG-GGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95485753 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95485780 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
95485807 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
95485834 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95485861 ATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95485887 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
95485913 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
95485940 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
95485967 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
95485994 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95486021 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
95486048 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
95486064 GGAGTACTTT
Statistics
Matches: 275, Mismatches: 30, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
26 64 0.23
27 207 0.75
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:95485920 original size:160 final size:161
Alignment explanation
Indices: 95485727--95486065 Score: 488
Period size: 160 Copynumber: 2.1 Consensus size: 161
95485717 GGGTATTTTA
* *
95485727 GTAATTTTGTAAATCGGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
1 GTAATTATGTAAATCGGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAA
* **
95485792 A-TCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
66 ACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTA
* *
95485856 AAACGATAATTATGTAA-ATCG-GGGTAAAACG
130 AAACGATAATTATATAACCT-GAGGGTAAAACG
* * * *
95485887 GTAATTATGTAAATTGGGGTAAAAC-GATAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTATGTAAATCGGGGTAAAACAG-TAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
95485951 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTA
65 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTA
* *
95486016 AAACGGTAATTCTATAACCTGAGGGTAAAACG
130 AAACGATAATTATATAACCTGAGGGTAAAACG
* *
95486048 GTAATTCTATAAATCGGG
1 GTAATTATGTAAATCGGG
95486066 AGTACTTTGG
Statistics
Matches: 159, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
159 1 0.01
160 131 0.82
161 27 0.17
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (161 bp):
GTAATTATGTAAATCGGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAA
ACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAA
AACGATAATTATATAACCTGAGGGTAAAACG
Found at i:95486107 original size:81 final size:81
Alignment explanation
Indices: 95485727--95486107 Score: 369
Period size: 81 Copynumber: 4.7 Consensus size: 81
95485717 GGGTATTTTA
* * * * ** * *
95485727 GTAATTTTGTAAATCG-GGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
*
95485791 AA-TCGAGGGTAAAATG
66 AACT-GAGGGTAAAACG
* ** * * *
95485807 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
95485872 AA-TCG-GGGTAAAACG
66 AACT-GAGGGTAAAACG
* * * * * * * * *
95485887 GTAATTATGTAAATTG-GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
95485951 AACTGAGGGTAAAACG
66 AACTGAGGGTAAAACG
* **
95485967 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
*
95486032 ACCTGAGGGTAAAACG
66 AACTGAGGGTAAAACG
**** * * **
95486048 GTAATTCTATAAATCG-GGAGTACTTTGGTAATTTTACAAGTTGAGGGTATTACAATAATT
1 GTAATTCTATAAATCGAGG-GTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATT
95486108 GGTAAACTAA
Statistics
Matches: 258, Mismatches: 38, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
79 44 0.17
80 65 0.25
81 149 0.58
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
AACTGAGGGTAAAACG
Found at i:95488876 original size:30 final size:31
Alignment explanation
Indices: 95488842--95488904 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95488832 CCTTTTCATA
95488842 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
95488872 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
95488903 TT
1 TT
95488905 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:95489151 original size:23 final size:24
Alignment explanation
Indices: 95489096--95489237 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
95489086 GCTTTATCAT
* *
95489096 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
95489121 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
95489144 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
95489167 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
95489191 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
95489215 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
95489238 TCACTTCCTC
Statistics
Matches: 112, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
23 45 0.40
24 55 0.49
25 12 0.11
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:95489312 original size:20 final size:20
Alignment explanation
Indices: 95489287--95489347 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
95489277 TTATGATTAC
95489287 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
95489307 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
95489327 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
95489347 A
1 A
95489348 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:95489422 original size:25 final size:25
Alignment explanation
Indices: 95489390--95489437 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95489380 ATACATAAAC
* * *
95489390 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
95489415 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
95489438 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:95490728 original size:27 final size:27
Alignment explanation
Indices: 95490674--95491009 Score: 432
Period size: 27 Copynumber: 12.6 Consensus size: 27
95490664 GGGTATTTTA
* *
95490674 GTAATTTTGTAAATCG-GGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95490700 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95490727 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
95490754 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
95490781 GTAATT-TGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95490807 ATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95490833 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
95490859 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
95490886 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
95490913 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
95490940 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
95490967 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
95490994 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
95491010 GGAGTACTTT
Statistics
Matches: 275, Mismatches: 28, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
26 89 0.32
27 182 0.66
28 4 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:95491053 original size:81 final size:81
Alignment explanation
Indices: 95490674--95491053 Score: 362
Period size: 81 Copynumber: 4.7 Consensus size: 81
95490664 GGGTATTTTA
* * * * ** * *
95490674 GTAATTTTGTAAATCG-GGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
*
95490738 AA-TCGAGGGTAAAATG
66 AACT-GAGGGTAAAACG
* * * *
95490754 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTGT--AAATCGAGGGTAAAACGATAATTATGT
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTT-TACAAATCGAGGGTAAAACAATAATTCTAT
95490817 AAA-TCG-GGGTAAAACG
65 AAACT-GAGGGTAAAACG
* * * * * * * * *
95490833 GTAATTATGTAAATTG-GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
95490897 AACTGAGGGTAAAACG
66 AACTGAGGGTAAAACG
* **
95490913 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
*
95490978 ACCTGAGGGTAAAACG
66 AACTGAGGGTAAAACG
**** * * **
95490994 GTAATTCTATAAATCG-GGAGTACTTTGGTAATTTTACAAGTTGAGGGTATTACAATAATT
1 GTAATTCTATAAATCGAGG-GTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATT
95491054 GGTAAACTAA
Statistics
Matches: 255, Mismatches: 37, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
77 1 0.00
78 15 0.06
79 50 0.20
80 70 0.27
81 118 0.46
82 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
AACTGAGGGTAAAACG
Found at i:95493266 original size:17 final size:17
Alignment explanation
Indices: 95493244--95493282 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
95493234 AAAATCCTTA
95493244 TTTCTCCCTTTT-CTTTC
1 TTTCT-CCTTTTCCTTTC
*
95493261 TTTCTCTTTTTCCTTTC
1 TTTCTCCTTTTCCTTTC
95493278 TTTCT
1 TTTCT
95493283 TTCTTCCCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTCTCCTTTTCCTTTC
Found at i:95493516 original size:18 final size:19
Alignment explanation
Indices: 95493495--95493530 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
95493485 TTCCTTTTGC
95493495 TTTCCC-CAAAACTTTTAT
1 TTTCCCTCAAAACTTTTAT
95493513 TTTCCCTCAAAACTTTTA
1 TTTCCCTCAAAACTTTTA
95493531 CTTCCTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTCCCTCAAAACTTTTAT
Found at i:95493535 original size:18 final size:19
Alignment explanation
Indices: 95493496--95493541 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
95493486 TCCTTTTGCT
*
95493496 TTCCC-CAAAACTTTTATT
1 TTCCCTCAAAACTTTTATC
95493514 TTCCCTCAAAACTTTTA-C
1 TTCCCTCAAAACTTTTATC
*
95493532 TTCCTTCAAA
1 TTCCCTCAAA
95493542 TCTCTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.28, C:0.30, G:0.00, T:0.41
Consensus pattern (19 bp):
TTCCCTCAAAACTTTTATC
Found at i:95497180 original size:13 final size:13
Alignment explanation
Indices: 95497162--95497212 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
95497152 CTTAAACCAA
95497162 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
* *
95497175 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGT
*
95497188 ACCTTTCAAAAGT
1 ACTTTTCAAAAGT
*
95497201 AATTTTCAAAAG
1 ACTTTTCAAAAG
95497213 CATTGCTAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
12 4 0.14
13 20 0.69
14 5 0.17
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:95498732 original size:7 final size:6
Alignment explanation
Indices: 95498691--95498731 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
95498681 ATAATTTAAT
*
95498691 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
95498732 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:95498732 original size:20 final size:20
Alignment explanation
Indices: 95498694--95498733 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
95498684 ATTTAATAAA
**
95498694 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
95498714 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
95498734 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:95498769 original size:9 final size:9
Alignment explanation
Indices: 95498751--95498819 Score: 77
Period size: 9 Copynumber: 7.7 Consensus size: 9
95498741 TTTAGACAAA
95498751 TAATTTGGT
1 TAATTTGGT
*
95498760 TAATTCGGT
1 TAATTTGGT
*
95498769 TAATTTGGG
1 TAATTTGGT
95498778 TAATTTGAG-
1 TAATTTG-GT
*
95498787 TAATTCGGT
1 TAATTTGGT
* *
95498796 TAATTCGAT
1 TAATTTGGT
95498805 TAATTTGGT
1 TAATTTGGT
95498814 TAATTT
1 TAATTT
95498820 TATACTTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
8 1 0.02
9 49 0.96
10 1 0.02
ACGTcount: A:0.26, C:0.04, G:0.20, T:0.49
Consensus pattern (9 bp):
TAATTTGGT
Found at i:95498808 original size:27 final size:27
Alignment explanation
Indices: 95498751--95498818 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
95498741 TTTAGACAAA
* *
95498751 TAATTTGGTTAATTCGGTTAATTTGGG
1 TAATTTGGTTAATTCGGTTAATTCGAG
*
95498778 TAATTTGAG-TAATTCGGTTAATTCGAT
1 TAATTTG-GTTAATTCGGTTAATTCGAG
95498805 TAATTTGGTTAATT
1 TAATTTGGTTAATT
95498819 TTATACTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 34 0.94
28 1 0.03
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.49
Consensus pattern (27 bp):
TAATTTGGTTAATTCGGTTAATTCGAG
Found at i:95503178 original size:26 final size:26
Alignment explanation
Indices: 95503149--95503255 Score: 153
Period size: 26 Copynumber: 4.1 Consensus size: 26
95503139 TGGTACAAAT
95503149 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
95503175 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* * *
95503201 GGATAATGGGTTAGGTAACTGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
95503227 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
95503253 TGA
1 TGA
95503256 CAGGCATTTC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 70 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:95503214 original size:52 final size:52
Alignment explanation
Indices: 95503150--95503252 Score: 170
Period size: 52 Copynumber: 2.0 Consensus size: 52
95503140 GGTACAAATT
95503150 GATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCAG
1 GATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCAG
* * * *
95503202 GATAATGGGTTAGGTAACTGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 GATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
95503253 TGACAGGCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (52 bp):
GATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCAG
Found at i:95504909 original size:42 final size:41
Alignment explanation
Indices: 95504850--95504934 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 41
95504840 GTCCTGGTGG
95504850 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT
1 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATAT
95504892 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATAT
1 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATAT
95504933 CT
1 CT
95504935 GTATCTGGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 6 0.14
42 37 0.86
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (41 bp):
CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATAT
Found at i:95505938 original size:12 final size:11
Alignment explanation
Indices: 95505916--95505945 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
95505906 TCTGTAAGTA
95505916 TTTCTGAAT-T
1 TTTCTGAATAT
95505926 TTTCTGAATAT
1 TTTCTGAATAT
95505937 TTTCTGAAT
1 TTTCTGAAT
95505946 TATCTGTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (11 bp):
TTTCTGAATAT
Found at i:95505941 original size:11 final size:10
Alignment explanation
Indices: 95505916--95505946 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
95505906 TCTGTAAGTA
95505916 TTTCTGAATT
1 TTTCTGAATT
95505926 TTTCTGAATAT
1 TTTCTGAAT-T
95505937 TTTCTGAATT
1 TTTCTGAATT
95505947 ATCTGTCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.58
Consensus pattern (10 bp):
TTTCTGAATT
Found at i:95510081 original size:26 final size:26
Alignment explanation
Indices: 95510052--95510159 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
95510042 TGGTACAAAT
95510052 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95510078 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95510104 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95510130 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95510156 TGAT
1 TGAT
95510160 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95511804 original size:42 final size:42
Alignment explanation
Indices: 95511745--95511830 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
95511735 GTCCTGGTGG
95511745 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT
1 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT
95511787 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT
1 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT
95511829 CT
1 CT
95511831 GTTCTGGTGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (42 bp):
CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT
Found at i:95511877 original size:27 final size:27
Alignment explanation
Indices: 95511790--95511884 Score: 124
Period size: 27 Copynumber: 3.5 Consensus size: 27
95511780 CATATATCTA
95511790 TGCCACAATTATCTG-ATCTGGTGGCTC
1 TGCCACAA-TATCTGTATCTGGTGGCTC
95511817 TGCCACATATATCTGT-TCTGGTGGCTC
1 TGCCACA-ATATCTGTATCTGGTGGCTC
*
95511844 TGCCACAATATCTGTATCTGGTGACT-
1 TGCCACAATATCTGTATCTGGTGGCTC
*
95511870 TCGTCACAATATCTG
1 T-GCCACAATATCTG
95511885 GCAGCCTCGC
Statistics
Matches: 62, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
26 9 0.15
27 52 0.84
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:95512967 original size:11 final size:10
Alignment explanation
Indices: 95512945--95512974 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
95512935 TCTGTAAGTA
95512945 TTCTGAATTT
1 TTCTGAATTT
95512955 TTCTGAATATT
1 TTCTGAAT-TT
95512966 TTCTGAATT
1 TTCTGAATT
95512975 ATCTGTCTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (10 bp):
TTCTGAATTT
Found at i:95517086 original size:26 final size:26
Alignment explanation
Indices: 95517057--95517163 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
95517047 TGGTACAAAT
95517057 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95517083 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95517109 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95517135 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95517160 TGAT
1 TGAT
95517164 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 22 0.29
26 55 0.71
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95520234 original size:28 final size:28
Alignment explanation
Indices: 95520163--95520236 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
95520153 ATAATAAGCC
* *
95520163 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
95520191 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
95520219 CGCGCACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
95520237 CAATTTGAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:95522030 original size:42 final size:42
Alignment explanation
Indices: 95521971--95522056 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
95521961 GTCCTGGTGG
95521971 CTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATAT
1 CTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATAT
* *
95522013 CTATGCCATAATTATCTGATCTGGTGGCTCTGCCACATATAT
1 CTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATAT
95522055 CT
1 CT
95522057 GTTCTGGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (42 bp):
CTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATAT
Found at i:95522046 original size:27 final size:27
Alignment explanation
Indices: 95522016--95522088 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
95522006 CATATATCTA
95522016 TGCCATAATTATCTGATCTGGTGGCTC
1 TGCCATAATTATCTGATCTGGTGGCTC
* *
95522043 TGCCA-CATATATCTGTTCTGGTGGCTC
1 TGCCATAAT-TATCTGATCTGGTGGCTC
95522070 TGCCATAA-TATCTGTATCT
1 TGCCATAATTATCTG-ATCT
95522089 AGTGACTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 8 0.21
27 30 0.77
28 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
TGCCATAATTATCTGATCTGGTGGCTC
Found at i:95528197 original size:64 final size:64
Alignment explanation
Indices: 95528116--95528371 Score: 377
Period size: 64 Copynumber: 4.0 Consensus size: 64
95528106 TCATTCATAA
*
95528116 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * *
95528180 TACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * ** *
95528244 CACATCTAATTAGGAGTATTTGATTCATTTCAATCATAATATCCTAATTATTTGACATTAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * *
95528308 CACATCTAGTTAGGAGTATTTGATTCATTTTGATCATAGCATCCTAGTTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
95528372 GATACATGAA
Statistics
Matches: 169, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 169 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:95528344 original size:128 final size:128
Alignment explanation
Indices: 95528116--95528371 Score: 422
Period size: 128 Copynumber: 2.0 Consensus size: 128
95528106 TCATTCATAA
* * * *
95528116 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATT
1 CACATCTAATTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATCAGCATC
95528181 ACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCAT
66 ACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCAT
* * *
95528244 CACATCTAATTAGGAGTATTTGATTCATTTCAATCATAATATCCTAATTATTTGACATTAGCATC
1 CACATCTAATTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATCAGCATC
* * *
95528309 ACATCTAGTTAGGAGTATTTGATTCATTTTGATCATAGCATCCTAGTTATTTGGCATAAGCAT
66 ACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCAT
95528372 GATACATGAA
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 118 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (128 bp):
CACATCTAATTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATCAGCATC
ACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCAT
Found at i:95528869 original size:176 final size:176
Alignment explanation
Indices: 95528574--95528890 Score: 401
Period size: 176 Copynumber: 1.8 Consensus size: 176
95528564 ACGATAAATA
* * *
95528574 TTATCTCCATGTATTGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGT
1 TTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGAAGT
* * * *
95528639 AGAGCTAGCTCAATATATAAATCTTATCTTTCTAAGGTAGCAAGGAAGCAGACTGAA-ATTTGCA
66 AGAGCTAGCTCAATATATAAATCTAATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGA-TTGAA
95528703 GATCTTATCTCCCTAGGCAGCAGTGGGCAGATCGAAGATGGCGAATG
130 GATCTTATCTCCCTAGGCAGCAGTGGGCAGATCGAAGATGGCGAATG
* * * * *
95528750 TTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCGCTAGCCTTATCTCTCTGAGGTAGTAAG
1 TTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAG-AAG
* * * *
95528815 -AGAGC-AGGTTGGCGAT-TAT-AGTCTAATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATT
65 TAGAGCTA-GCT--CAATATATAAATCTAATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATT
*
95528876 GAAGATTTTATCTCC
127 GAAGATCTTATCTCC
95528891 TTGAAGTTGT
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
175 1 0.01
176 109 0.92
177 6 0.05
178 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (176 bp):
TTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGAAGT
AGAGCTAGCTCAATATATAAATCTAATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTGAAG
ATCTTATCTCCCTAGGCAGCAGTGGGCAGATCGAAGATGGCGAATG
Found at i:95528940 original size:45 final size:45
Alignment explanation
Indices: 95528864--95528956 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 45
95528854 GCAAGGAAAC
* * * * *
95528864 AGACTGAAGATTGAAGATTTTATCTCCTTGAAGTTGTAGTGGAGT
1 AGACTGAAGATAGAAGATCTTATCTCATTGAAGTTGCAGAGGAGT
* *
95528909 AGACTGAAGATAGCAGATCTTGTCTCATTGAAGTTGCAGAGGAGT
1 AGACTGAAGATAGAAGATCTTATCTCATTGAAGTTGCAGAGGAGT
95528954 AGA
1 AGA
95528957 TCGAAGCCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (45 bp):
AGACTGAAGATAGAAGATCTTATCTCATTGAAGTTGCAGAGGAGT
Found at i:95530419 original size:30 final size:30
Alignment explanation
Indices: 95530379--95530439 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
95530369 TTCCCAAGCC
*
95530379 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGCCAAAATG-GTAATTATGCAAAAGTT
* *
95530409 TAGGGCCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGCCAAAATGGTAATTATGCAAAAGTT
95530439 T
1 T
95530440 GTATTAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGCCAAAATGGTAATTATGCAAAAGTT
Found at i:95531160 original size:49 final size:50
Alignment explanation
Indices: 95531079--95531325 Score: 327
Period size: 49 Copynumber: 5.0 Consensus size: 50
95531069 TGAGCTATTG
*
95531079 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * * *
95531129 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T
* * * * **
95531179 TCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* *
95531229 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * *
95531279 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
95531326 GCTTCGGCTA
Statistics
Matches: 170, Mismatches: 25, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
49 83 0.49
50 49 0.29
51 38 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
Found at i:95531217 original size:28 final size:28
Alignment explanation
Indices: 95531185--95531268 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
95531175 AACTTCGATC
95531185 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
95531213 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
95531235 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
95531263 ACGTGT
1 ACGTGT
95531269 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:95533205 original size:15 final size:15
Alignment explanation
Indices: 95533185--95533216 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
95533175 TAATATTATC
95533185 TAGGAAACATTGAAA
1 TAGGAAACATTGAAA
95533200 TAGGAAACATTGAAA
1 TAGGAAACATTGAAA
95533215 TA
1 TA
95533217 CATGTATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (15 bp):
TAGGAAACATTGAAA
Found at i:95536904 original size:49 final size:50
Alignment explanation
Indices: 95536823--95537069 Score: 318
Period size: 49 Copynumber: 5.0 Consensus size: 50
95536813 TGAGCTATTG
*
95536823 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * * * *
95536873 T-GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T
* * * * **
95536923 TCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* *
95536973 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * *
95537023 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
95537070 GCTTCGGCTA
Statistics
Matches: 168, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
49 82 0.49
50 49 0.29
51 37 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
Found at i:95536961 original size:28 final size:28
Alignment explanation
Indices: 95536929--95537012 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
95536919 AACTTCGATC
95536929 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
95536957 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
95536979 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
95537007 ACGTGT
1 ACGTGT
95537013 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:95542410 original size:19 final size:19
Alignment explanation
Indices: 95542363--95542410 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
95542353 CATCGCGTCA
95542363 AGGCAATTGGTTTTTCAGG
1 AGGCAATTGGTTTTTCAGG
** *
95542382 AAACAATTGGTTTTTTAGG
1 AGGCAATTGGTTTTTCAGG
*
95542401 AGGCATTTGG
1 AGGCAATTGG
95542411 ATCGGTTGGA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.25, C:0.08, G:0.29, T:0.38
Consensus pattern (19 bp):
AGGCAATTGGTTTTTCAGG
Found at i:95547989 original size:3 final size:3
Alignment explanation
Indices: 95547981--95548024 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
95547971 ACTGCCATGA
*
95547981 AAG AAG AAG AAG AAG AAG AAG -AG AAG AAG AAG -AG GAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
95548025 GGGCGGCGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:95548007 original size:14 final size:14
Alignment explanation
Indices: 95547981--95548024 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
95547971 ACTGCCATGA
95547981 AAGAAGAAGAAGAAG
1 AAGAAG-AGAAGAAG
95547996 AAGAAGAGAAGAAG
1 AAGAAGAGAAGAAG
*
95548010 AAGAGGAGAAGAAG
1 AAGAAGAGAAGAAG
95548024 A
1 A
95548025 GGGCGGCGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 22 0.79
15 6 0.21
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (14 bp):
AAGAAGAGAAGAAG
Found at i:95548026 original size:11 final size:11
Alignment explanation
Indices: 95547981--95548025 Score: 72
Period size: 11 Copynumber: 4.0 Consensus size: 11
95547971 ACTGCCATGA
95547981 AAGAAGAAGAAG
1 AAGAAGAAG-AG
95547993 AAGAAGAAGAG
1 AAGAAGAAGAG
95548004 AAGAAGAAGAG
1 AAGAAGAAGAG
*
95548015 GAGAAGAAGAG
1 AAGAAGAAGAG
95548026 GGCGGCGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 23 0.72
12 9 0.28
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (11 bp):
AAGAAGAAGAG
Found at i:95548072 original size:19 final size:18
Alignment explanation
Indices: 95548040--95548097 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
95548030 GCGAAAAAGG
95548040 AAAGAAAGAAAGAAAAAA
1 AAAGAAAGAAAGAAAAAA
* *
95548058 AAAGAAGAGAGAGAAGAAA
1 AAAGAA-AGAAAGAAAAAA
* *
95548077 AGAGAAAAATAAGAAAAAA
1 AAAGAAAGA-AAGAAAAAA
95548096 AA
1 AA
95548098 TAAATAGAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
18 8 0.26
19 23 0.74
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.02
Consensus pattern (18 bp):
AAAGAAAGAAAGAAAAAA
Found at i:95548581 original size:30 final size:31
Alignment explanation
Indices: 95548521--95548580 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
95548511 TTGTATGTAT
*
95548521 TGTTATTTTAAAAGTCGGTATAATTTTTTTA
1 TGTTATTTTAAAAGTCGATATAATTTTTTTA
*
95548552 TGTTATTTTAAAAGTTGATATAATTTTTT
1 TGTTATTTTAAAAGTCGATATAATTTTTT
95548581 AACTCATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.57
Consensus pattern (31 bp):
TGTTATTTTAAAAGTCGATATAATTTTTTTA
Found at i:95549123 original size:12 final size:13
Alignment explanation
Indices: 95549105--95549139 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
95549095 CCTTCCCTCG
95549105 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
95549118 -TTTTCTTTCTTT
1 CTTTTCTTTCTTT
*
95549130 CTTTCCTTTC
1 CTTTTCTTTC
95549140 CCCCTTGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
CTTTTCTTTCTTT
Found at i:95549290 original size:15 final size:14
Alignment explanation
Indices: 95549257--95549295 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
95549247 TCCACAACCT
*
95549257 TTTTTTTTTTTTAGA
1 TTTTTTTTTTTTA-C
*
95549272 TTTTTGTTTTTTAC
1 TTTTTTTTTTTTAC
95549286 TTTTTTTTTT
1 TTTTTTTTTT
95549296 AACAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.08, C:0.03, G:0.05, T:0.85
Consensus pattern (14 bp):
TTTTTTTTTTTTAC
Found at i:95554381 original size:2 final size:2
Alignment explanation
Indices: 95554374--95554410 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
95554364 AGTTTTGCTA
95554374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95554411 ACAAGGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:95558494 original size:42 final size:42
Alignment explanation
Indices: 95558425--95558569 Score: 148
Period size: 42 Copynumber: 3.5 Consensus size: 42
95558415 CAATGTCATG
* **** *
95558425 TCCCAGACATGGTCTTACAAGGGATCTCATATCGATGCCATA
1 TCCCAGATATGGTCTTACACCAAATCTCATATAGATGCCATA
* * * *
95558467 TCCCAGAAATGGTCTTATACCAAATCTCATTTAGATGCCATG
1 TCCCAGATATGGTCTTACACCAAATCTCATATAGATGCCATA
* * * *
95558509 TCCTAGATGTGGTCTTACACGAAATCTCATATTA-ACGCCATA
1 TCCCAGATATGGTCTTACACCAAATCTCATA-TAGATGCCATA
95558551 TCCCAGATATGGTCTTACA
1 TCCCAGATATGGTCTTACA
95558570 TGATAACATA
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 81 0.98
43 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
TCCCAGATATGGTCTTACACCAAATCTCATATAGATGCCATA
Found at i:95573822 original size:6 final size:6
Alignment explanation
Indices: 95573811--95573860 Score: 100
Period size: 6 Copynumber: 8.3 Consensus size: 6
95573801 AAAATATATA
95573811 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
95573859 AA
1 AA
95573861 TAAAATAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:95581801 original size:41 final size:41
Alignment explanation
Indices: 95581754--95581953 Score: 186
Period size: 41 Copynumber: 4.9 Consensus size: 41
95581744 AAACACCGCA
* * *
95581754 AAAAACTAAACAATAGCGGCATTTTTGGCCCAAACGCCATT
1 AAAAACTGATCAATAGCGGCATTTTTGGCCCAAACGCCACT
* * **
95581795 AAAAACTGATCAATAGCGGCGTTTTTTAGCTAAAACGCCACT
1 AAAAACTGATCAATAGCGGC-ATTTTTGGCCCAAACGCCACT
***** *
95581837 AAAAACTGATCAATAGCGGCATTTTTATATAAAACGCCATT
1 AAAAACTGATCAATAGCGGCATTTTTGGCCCAAACGCCACT
* * ** * * *
95581878 AAAAACTAAGCAATAGTTGCGTATTTGGTCCAAACGCCACT
1 AAAAACTGATCAATAGCGGCATTTTTGGCCCAAACGCCACT
* *
95581919 -AAAATTGATCAATAGCGGCATTTTTGGTCCAAACG
1 AAAAACTGATCAATAGCGGCATTTTTGGCCCAAACG
95581954 TCGCAAAAAA
Statistics
Matches: 128, Mismatches: 30, Indels: 3
0.80 0.19 0.02
Matches are distributed among these distances:
40 28 0.22
41 64 0.50
42 36 0.28
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (41 bp):
AAAAACTGATCAATAGCGGCATTTTTGGCCCAAACGCCACT
Found at i:95581851 original size:83 final size:82
Alignment explanation
Indices: 95581754--95581953 Score: 224
Period size: 83 Copynumber: 2.4 Consensus size: 82
95581744 AAACACCGCA
* * * * * *
95581754 AAAAACTAAACAATAGCGGCATTTTTGGCCCAAACGCCATTAAAAACTGATCAATAGCGGCGTTT
1 AAAAACTGATCAATAGCGGCATTTTTGGACCAAACGCCATTAAAAACTAAGCAATAGCGGCG-TA
95581819 TTTAGCT-AAAACGCCACT
65 TTT-GCTCAAAACGCCACT
** ** **
95581837 AAAAACTGATCAATAGCGGCATTTTTATATAAAACGCCATTAAAAACTAAGCAATAGTTGCGTAT
1 AAAAACTGATCAATAGCGGCATTTTTGGACCAAACGCCATTAAAAACTAAGCAATAGCGGCGTAT
* *
95581902 TTGGTCCAAACGCCACT
66 TTGCTCAAAACGCCACT
* *
95581919 -AAAATTGATCAATAGCGGCATTTTTGGTCCAAACG
1 AAAAACTGATCAATAGCGGCATTTTTGGACCAAACG
95581954 TCGCAAAAAA
Statistics
Matches: 96, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
81 31 0.32
82 14 0.15
83 51 0.53
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (82 bp):
AAAAACTGATCAATAGCGGCATTTTTGGACCAAACGCCATTAAAAACTAAGCAATAGCGGCGTAT
TTGCTCAAAACGCCACT
Found at i:95581986 original size:42 final size:39
Alignment explanation
Indices: 95581764--95581997 Score: 139
Period size: 42 Copynumber: 5.7 Consensus size: 39
95581754 AAAAACTAAA
* *
95581764 CAATAGCGGCATTTTTGGCCCAAACGCCATTAAAAACTGAT
1 CAATAGCGGCATTTTTGGTCCAAACGCCA--AAAAATTGAT
* * * *
95581805 CAATAGCGGCGTTTTTTAG-CTAAAACGCCACTAAAAACTGAT
1 CAATAGCGGC-ATTTTTGGTC-CAAACGCCA--AAAAATTGAT
* ** * * *
95581847 CAATAGCGGCATTTTT-ATATAAAACGCCATTAAAAACTAAG
1 CAATAGCGGCATTTTTGGT-CCAAACGCCA--AAAAATTGAT
** * * *
95581888 CAATAGTTGCGTATTTGGTCCAAACGCCACTAAAATTGAT
1 CAATAGCGGCATTTTTGGTCCAAACGCCA-AAAAATTGAT
*
95581928 CAATAGCGGCATTTTTGGTCCAAACGTCGCAAAAAAGTTTAT
1 CAATAGCGGCATTTTTGGTCCAAACG-C-CAAAAAA-TTGAT
* ** *
95581970 CTATAGCGGTGTTTTTGGTGCAAACGCC
1 CAATAGCGGCATTTTTGGTCCAAACGCC
95581998 CCAAAAAGTT
Statistics
Matches: 153, Mismatches: 32, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
40 29 0.19
41 60 0.39
42 64 0.42
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (39 bp):
CAATAGCGGCATTTTTGGTCCAAACGCCAAAAAATTGAT
Found at i:95582306 original size:14 final size:14
Alignment explanation
Indices: 95582281--95582328 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
95582271 ATGGCTTTCT
95582281 CTAAACCCTTAAATC
1 CTAAA-CCTTAAATC
95582296 CTAAACCTTAAA-C
1 CTAAACCTTAAATC
* *
95582309 CTTAAACCCTAAATT
1 C-TAAACCTTAAATC
95582324 CTAAA
1 CTAAA
95582329 AACATAAGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 2 0.07
14 21 0.72
15 6 0.21
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (14 bp):
CTAAACCTTAAATC
Found at i:95582328 original size:21 final size:21
Alignment explanation
Indices: 95582280--95582328 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
95582270 TATGGCTTTC
*
95582280 TCTAAACCCTTAAATCCTAAA
1 TCTAAACCCTTAAACCCTAAA
*
95582301 CCTTAAA-CCTTAAACCCTAAA
1 TC-TAAACCCTTAAACCCTAAA
95582322 TTCTAAA
1 -TCTAAA
95582329 AACATAAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (21 bp):
TCTAAACCCTTAAACCCTAAA
Found at i:95582594 original size:34 final size:35
Alignment explanation
Indices: 95582519--95582599 Score: 110
Period size: 38 Copynumber: 2.3 Consensus size: 35
95582509 GGTTTAAAGC
* *
95582519 TTATGGTTTAGGGTTCAATGGTAGTATATATTTTAAGT
1 TTATGGTTTAGGGCTCAATGGTAG---ATATGTTAAGT
95582557 TTATGGTTTAGGGCTCAATGGTAG-TATGTTAAGT
1 TTATGGTTTAGGGCTCAATGGTAGATATGTTAAGT
95582591 TTATGGTTT
1 TTATGGTTT
95582600 GGGTCGGGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
34 18 0.44
38 23 0.56
ACGTcount: A:0.23, C:0.04, G:0.26, T:0.47
Consensus pattern (35 bp):
TTATGGTTTAGGGCTCAATGGTAGATATGTTAAGT
Found at i:95583782 original size:82 final size:82
Alignment explanation
Indices: 95583668--95583831 Score: 208
Period size: 82 Copynumber: 2.0 Consensus size: 82
95583658 CTCCAACGAC
*
95583668 ATTAGCGGCGCTTTTTTGAAAAACACCGCTAAAGATCGAGAGTTAGCGGCGC-TTTTGTAAAAAT
1 ATTAGCGGCGCTTTTTTGAAAAACACCACTAAAGATCGAGAGTTAGCGGCGCTTTTTGTAAAAAT
*
95583732 GCCTG-AAAAGATCGAGA
66 ACC-GCAAAAGATCGAGA
* * * * *
95583749 ATTAGCGGCAG-TTTTTTCGAAAAACGCCACTAAAGTTCGAGATTTAGTGGCGCTTTTTTTAAAA
1 ATTAGCGGC-GCTTTTTT-GAAAAACACCACTAAAGATCGAGAGTTAGCGGCGCTTTTTGTAAAA
*
95583813 ATACCGCTAAAGATCGAGA
64 ATACCGCAAAAGATCGAGA
95583832 TTTATTGGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
81 15 0.21
82 32 0.45
83 24 0.34
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (82 bp):
ATTAGCGGCGCTTTTTTGAAAAACACCACTAAAGATCGAGAGTTAGCGGCGCTTTTTGTAAAAAT
ACCGCAAAAGATCGAGA
Found at i:95583832 original size:41 final size:41
Alignment explanation
Indices: 95583669--95583835 Score: 178
Period size: 41 Copynumber: 4.1 Consensus size: 41
95583659 TCCAACGACA
*
95583669 TTAGCGGCGCTTTTTTGAAAAACACCGCTAAAGATCGAGAG
1 TTAGCGGCGCTTTTTTGAAAAACACCGCTAAAGATCGAGAT
* ** * *
95583710 TTAGCGGCGCTTTTGT-AAAAATGCCTG-AAAAGATCGAGAA
1 TTAGCGGCGCTTTTTTGAAAAACACC-GCTAAAGATCGAGAT
* * *
95583750 TTAGCGGCAG-TTTTTTCGAAAAACGCCACTAAAGTTCGAGAT
1 TTAGCGGC-GCTTTTTT-GAAAAACACCGCTAAAGATCGAGAT
* * *
95583792 TTAGTGGCGCTTTTTTTAAAAATACCGCTAAAGATCGAGAT
1 TTAGCGGCGCTTTTTTGAAAAACACCGCTAAAGATCGAGAT
95583833 TTA
1 TTA
95583836 TTGGCTTTCT
Statistics
Matches: 103, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
40 31 0.30
41 41 0.40
42 31 0.30
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTTGAAAAACACCGCTAAAGATCGAGAT
Found at i:95584872 original size:85 final size:87
Alignment explanation
Indices: 95584729--95584897 Score: 234
Period size: 85 Copynumber: 2.0 Consensus size: 87
95584719 GTGAACTGTG
** * *
95584729 AAGCAATCTATTAACATTTTAAACCTCAGCTAAACAACTCTTCTACCTATAAAGAACATTT-AC-
1 AAGCAATCTATTAACATTTTAAACCTCAGCTAAACAACTCTTCTACAAACAAAAAACATTTGACT
*
95584792 TATACCATTGCAATTATTATTC
66 TATACCACTGCAATTATTATTC
* * *
95584814 AAGCAATTTATTAACATTTTAAACCTCAGTTAAACAAGTCTTCTACAAACAAAAAACATTTGACT
1 AAGCAATCTATTAACATTTTAAACCTCAGCTAAACAACTCTTCTACAAACAAAAAACATTTGACT
* *
95584879 TTTATCACTGCAATTATTA
66 TATACCACTGCAATTATTA
95584898 CCCAAGAACA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 54 0.75
86 2 0.03
87 16 0.22
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.34
Consensus pattern (87 bp):
AAGCAATCTATTAACATTTTAAACCTCAGCTAAACAACTCTTCTACAAACAAAAAACATTTGACT
TATACCACTGCAATTATTATTC
Found at i:95586563 original size:22 final size:22
Alignment explanation
Indices: 95586505--95586626 Score: 108
Period size: 22 Copynumber: 5.7 Consensus size: 22
95586495 TCATCTCAAG
95586505 ATAAGTTTAAAAGGTATTTAAT
1 ATAAGTTTAAAAGGTATTTAAT
* **
95586527 ATAA--ATAAATTGTATTTAAT
1 ATAAGTTTAAAAGGTATTTAAT
95586547 ATAAGTTTAAAAGGTATTTAAT
1 ATAAGTTTAAAAGGTATTTAAT
* ** *** * *
95586569 ATTA--TCCAAATCCATCTCAAG
1 ATAAGTTTAAAAGGTAT-TTAAT
95586590 ATAAGTTTAAAAGGTATTTAAT
1 ATAAGTTTAAAAGGTATTTAAT
95586612 ATAAGTTTAAAAGGT
1 ATAAGTTTAAAAGGT
95586627 TGGGTTTCAT
Statistics
Matches: 73, Mismatches: 22, Indels: 10
0.70 0.21 0.10
Matches are distributed among these distances:
20 23 0.32
21 6 0.08
22 38 0.52
23 6 0.08
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (22 bp):
ATAAGTTTAAAAGGTATTTAAT
Found at i:95586608 original size:43 final size:43
Alignment explanation
Indices: 95586480--95586613 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 43
95586470 CTTTAGTTGC
95586480 AATATTATCCAAATCTCATCTCAAGATAAGTTTAAAAGGTATTT
1 AATATTATCCAAATC-CATCTCAAGATAAGTTTAAAAGGTATTT
* ** * *
95586524 AATATAAAT--AAATTGTAT-TTAATATAAGTTTAAAAGGTATTT
1 AATAT-TATCCAAA-TCCATCTCAAGATAAGTTTAAAAGGTATTT
95586566 AATATTATCCAAATCCATCTCAAGATAAGTTTAAAAGGTATTT
1 AATATTATCCAAATCCATCTCAAGATAAGTTTAAAAGGTATTT
95586609 AATAT
1 AATAT
95586614 AAGTTTAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 11
0.78 0.10 0.11
Matches are distributed among these distances:
41 2 0.03
42 30 0.40
43 35 0.47
44 6 0.08
45 2 0.03
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (43 bp):
AATATTATCCAAATCCATCTCAAGATAAGTTTAAAAGGTATTT
Found at i:95586845 original size:9 final size:9
Alignment explanation
Indices: 95586833--95587128 Score: 150
Period size: 9 Copynumber: 33.6 Consensus size: 9
95586823 TATATCATAT
95586833 CATAACTTA
1 CATAACTTA
95586842 CATAACTTA
1 CATAACTTA
95586851 CATAACTTA
1 CATAACTTA
*
95586860 TATAACTTA
1 CATAACTTA
* *
95586869 GATAA-ATA
1 CATAACTTA
* *
95586877 TATAACATA
1 CATAACTTA
* *
95586886 GATAA-ATA
1 CATAACTTA
*
95586894 TATAACTTA
1 CATAACTTA
95586903 CATAACTTA
1 CATAACTTA
* *
95586912 CACAA-ATA
1 CATAACTTA
* * *
95586920 TATATCATA
1 CATAACTTA
95586929 TCATAACTTA
1 -CATAACTTA
95586939 CATAA--TA
1 CATAACTTA
*
95586946 CATAA-ATA
1 CATAACTTA
* * *
95586954 TATATCATA
1 CATAACTTA
95586963 TCATAACTTA
1 -CATAACTTA
95586973 CATAACTTA
1 CATAACTTA
95586982 CATAACTTA
1 CATAACTTA
*
95586991 TATAACTTA
1 CATAACTTA
* *
95587000 GATAA-ATA
1 CATAACTTA
*
95587008 TATAACTTA
1 CATAACTTA
*
95587017 CACAACTTTA
1 CATAAC-TTA
*
95587027 CATAA-ATA
1 CATAACTTA
* * *
95587035 TATATCATA
1 CATAACTTA
*
95587044 TCATATCTTA
1 -CATAACTTA
95587054 CATAACTTA
1 CATAACTTA
95587063 CATAATACTTA
1 CAT-A-ACTTA
* *
95587074 AAT-ATTTA
1 CATAACTTA
95587082 TCAT-A--T-
1 -CATAACTTA
*
95587088 CATATCTTA
1 CATAACTTA
95587097 CATAACTTA
1 CATAACTTA
*
95587106 CAAAACTTA
1 CATAACTTA
*
95587115 CTTAACTTA
1 CATAACTTA
95587124 CATAA
1 CATAA
95587129 TAAATAAATA
Statistics
Matches: 225, Mismatches: 44, Indels: 36
0.74 0.14 0.12
Matches are distributed among these distances:
5 3 0.01
7 8 0.04
8 38 0.17
9 142 0.63
10 27 0.12
11 7 0.03
ACGTcount: A:0.47, C:0.16, G:0.01, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:95586880 original size:17 final size:17
Alignment explanation
Indices: 95586843--95587018 Score: 93
Period size: 17 Copynumber: 10.6 Consensus size: 17
95586833 CATAACTTAC
*
95586843 ATAACTTACATAACTTAT
1 ATAACTTACATAA-ATAT
*
95586861 ATAACTTAGATAAATAT
1 ATAACTTACATAAATAT
* *
95586878 ATAACATAGATAAATAT
1 ATAACTTACATAAATAT
95586895 ATAACTTAC--------
1 ATAACTTACATAAATAT
*
95586904 ATAACTTACACAAATAT
1 ATAACTTACATAAATAT
* * * *
95586921 ATATCATATCATAACTTAC
1 ATAACTTA-CATAA-ATAT
95586940 ATAA--TACATAAATAT
1 ATAACTTACATAAATAT
* * * *
95586955 ATATCATATCATAACTTAC
1 ATAACTTA-CATAA-ATAT
*
95586974 ATAACTTACATAACTTAT
1 ATAACTTACATAA-ATAT
*
95586992 ATAACTTAGATAAATAT
1 ATAACTTACATAAATAT
95587009 ATAACTTACA
1 ATAACTTACA
95587019 CAACTTTACA
Statistics
Matches: 122, Mismatches: 22, Indels: 29
0.71 0.13 0.17
Matches are distributed among these distances:
9 9 0.07
15 5 0.04
16 5 0.04
17 48 0.39
18 42 0.34
19 13 0.11
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (17 bp):
ATAACTTACATAAATAT
Found at i:95586901 original size:43 final size:44
Alignment explanation
Indices: 95586829--95587031 Score: 198
Period size: 43 Copynumber: 4.6 Consensus size: 44
95586819 TATATATATC
* *
95586829 ATATCATAACTTACATAACTTACATAACTTATATAACTTAGATAA
1 ATAT-ATAACATACATAACTTACATAACTTACATAACTTAGATAA
* * * * *
95586874 ATATATAACATAGATAA-ATATATAACTTACATAACTTACACAA
1 ATATATAACATACATAACTTACATAACTTACATAACTTAGATAA
* * * *
95586917 ATATATATCATATCATAACTTACATAA--TACATAA-ATATATATC
1 ATATATAACATA-CATAACTTACATAACTTACATAACTTAGATA-A
* *
95586960 ATATCATAACTTACATAACTTACATAACTTATATAACTTAGATAA
1 ATAT-ATAACATACATAACTTACATAACTTACATAACTTAGATAA
* *
95587005 ATATATAACTTACACAACTTTACATAA
1 ATATATAACATACATAAC-TTACATAA
95587032 ATATATATCA
Statistics
Matches: 128, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
42 4 0.03
43 57 0.45
44 34 0.27
45 28 0.22
46 5 0.04
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.34
Consensus pattern (44 bp):
ATATATAACATACATAACTTACATAACTTACATAACTTAGATAA
Found at i:95587047 original size:81 final size:80
Alignment explanation
Indices: 95586833--95587067 Score: 255
Period size: 79 Copynumber: 3.0 Consensus size: 80
95586823 TATATCATAT
* * * * * * * *
95586833 CATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACATA-GATAA-ATATA
1 CATAACTTACATAA-ATATATAACTTACATAACTTACATAAATATATATCATATCATAACTTACA
95586896 TAACTTACATAACTTA
65 TAACTTACATAACTTA
* * * *
95586912 CACAA-ATATATATCATATCATAACTTACATAA--TACATAAATATATATCATATCATAACTTAC
1 CATAACTTACATA-AATAT-ATAACTTACATAACTTACATAAATATATATCATATCATAACTTAC
95586974 ATAACTTACATAACTTA
64 ATAACTTACATAACTTA
* * * *
95586991 TATAACTTAGATAAATATATAACTTACACAACTTTACATAAATATATATCATATCATATCTTACA
1 CATAACTTACATAAATATATAACTTACATAAC-TTACATAAATATATATCATATCATAACTTACA
95587056 TAACTTACATAA
65 TAACTTACATAA
95587068 TACTTAAATA
Statistics
Matches: 129, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
77 17 0.13
78 23 0.18
79 42 0.33
80 5 0.04
81 42 0.33
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.35
Consensus pattern (80 bp):
CATAACTTACATAAATATATAACTTACATAACTTACATAAATATATATCATATCATAACTTACAT
AACTTACATAACTTA
Found at i:95587085 original size:43 final size:41
Alignment explanation
Indices: 95587029--95587114 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 41
95587019 CAACTTTACA
95587029 TAAATATATATCATATCATATCTTACATAACTTACATAATACT
1 TAAATATATATCATATCATATCTTACATAACTTACA-AA-ACT
*
95587072 TAAATATTTATCATATCATATCTTACATAACTTACAAAACT
1 TAAATATATATCATATCATATCTTACATAACTTACAAAACT
95587113 TA
1 TA
95587115 CTTAACTTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
41 5 0.12
42 2 0.05
43 35 0.83
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (41 bp):
TAAATATATATCATATCATATCTTACATAACTTACAAAACT
Found at i:95587113 original size:124 final size:129
Alignment explanation
Indices: 95586820--95587128 Score: 400
Period size: 124 Copynumber: 2.4 Consensus size: 129
95586810 TTAATGTTAT
95586820 ATATATATCATATCATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACAT
1 ATATATATCATATCATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACAT
* * * *
95586885 AGATAAATATATAACTTACATAACTTACACAAATATATATCATATCATAACTTACATAATACATA
66 ACACAAATATATAACATAAATAAC-TACAC-AATATATATCATATCATAACTTACATAATACATA
95586950 A
129 A
*
95586951 ATATATATCATATCATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACTT
1 ATATATATCATATCATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACAT
* * * *
95587016 ACACAACT-T-T-ACATAAATATA-TA-TC-ATATCATATCTTA-CATAACTTACATAATACTTA
66 ACACAAATATATAACATAAATA-ACTACACAATAT-ATATCATATCATAACTTACATAATACATA
95587074 A
129 A
* * * *
95587075 ATATTTATCATATCATATCTTACATAACTTACAAAACTTACT-TAACTTACATAA
1 ATATATATCATATCATAACTTACATAACTTACATAACTTA-TATAACTTAGATAA
95587129 TAAATAAATA
Statistics
Matches: 162, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
124 72 0.44
125 8 0.05
126 1 0.01
127 2 0.01
128 7 0.04
129 2 0.01
130 1 0.01
131 69 0.43
ACGTcount: A:0.47, C:0.16, G:0.01, T:0.36
Consensus pattern (129 bp):
ATATATATCATATCATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACAT
ACACAAATATATAACATAAATAACTACACAATATATATCATATCATAACTTACATAATACATAA
Found at i:95592196 original size:13 final size:14
Alignment explanation
Indices: 95592180--95592208 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
95592170 TTTTAAATAT
95592180 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
95592193 TTATAATGGTTTAA
1 TTATAATGGTTTAA
95592207 TT
1 TT
95592209 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:95592886 original size:47 final size:47
Alignment explanation
Indices: 95592817--95592910 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
95592807 CATTGAGTTT
95592817 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
*
95592864 TTGAAGTATCATTTAGGTTTGCTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
95592911 AAGAAGGATT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.18, C:0.06, G:0.27, T:0.49
Consensus pattern (47 bp):
TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
Found at i:95593037 original size:43 final size:43
Alignment explanation
Indices: 95592977--95593070 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
95592967 CTTTTTTTTA
*
95592977 CCAAAAA-CGTCGCTAAAGGTGACGCTCTTTAGCAGCGTTTGT
1 CCAAAAAGCGTCGCTAAAGGTCACGCTCTTTAGCAGCGTTTGT
* **
95593019 CCAAAAAGCGTCGCTAAAGGTCACGTTCTTTAGTGGCGTTTGT
1 CCAAAAAGCGTCGCTAAAGGTCACGCTCTTTAGCAGCGTTTGT
95593062 CCAAAAAGC
1 CCAAAAAGC
95593071 ACTGCTAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 7 0.15
43 40 0.85
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (43 bp):
CCAAAAAGCGTCGCTAAAGGTCACGCTCTTTAGCAGCGTTTGT
Found at i:95593094 original size:43 final size:43
Alignment explanation
Indices: 95593011--95593098 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
95593001 CTCTTTAGCA
* ** * *
95593011 GCGTTTGTCCAAAAAGCGTCGCTAAAGGTCACGTTCTTTAGTG
1 GCGTTTGTCCAAAAAGCCTCGCTAAAGACCACATTATTTAGTG
*
95593054 GCGTTTGTCCAAAAAGCACT-GCTAAATACCACATTATTTAGTG
1 GCGTTTGTCCAAAAAGC-CTCGCTAAAGACCACATTATTTAGTG
95593097 GC
1 GC
95593099 CTTTTTTACA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (43 bp):
GCGTTTGTCCAAAAAGCCTCGCTAAAGACCACATTATTTAGTG
Found at i:95595513 original size:31 final size:31
Alignment explanation
Indices: 95595475--95595551 Score: 145
Period size: 31 Copynumber: 2.5 Consensus size: 31
95595465 TTTAGAGAGT
95595475 CACACACCCGTGTGGGTAGGCCGTGTGATCA
1 CACACACCCGTGTGGGTAGGCCGTGTGATCA
95595506 CACACACCCGTGTGGGTAGGCCGTGTGATCA
1 CACACACCCGTGTGGGTAGGCCGTGTGATCA
*
95595537 CACACACCCATGTGG
1 CACACACCCGTGTGG
95595552 CTTGGGACAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (31 bp):
CACACACCCGTGTGGGTAGGCCGTGTGATCA
Found at i:95599976 original size:42 final size:42
Alignment explanation
Indices: 95599930--95600051 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
95599920 CTTACATGGG
*
95599930 ATCTCACATCGATGCCATATCCCAGATATGGTCTTATACGAA
1 ATCTCATATCGATGCCATATCCCAGATATGGTCTTATACGAA
* * ** ** *
95599972 ATCTCATTTCGATGCCATGTCCTTGACGTGGTCTTACACGAA
1 ATCTCATATCGATGCCATATCCCAGATATGGTCTTATACGAA
* * *
95600014 ATCTCATATCAACGCCATATCCCAGATATGGTTTTATA
1 ATCTCATATCGATGCCATATCCCAGATATGGTCTTATA
95600052 TAGGATCTCA
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
ATCTCATATCGATGCCATATCCCAGATATGGTCTTATACGAA
Found at i:95604801 original size:271 final size:271
Alignment explanation
Indices: 95604318--95604863 Score: 993
Period size: 271 Copynumber: 2.0 Consensus size: 271
95604308 TTGGCCAATA
95604318 TTGGCATATAAATGCTTTAATTGTAACTAGCCATTGGAATGGCTTATGATGAATATGTTTGGTAT
1 TTGGCATATAAATGCTTTAATTGTAACTAGCCATTGGAATGGCTTATGATGAATATGTTTGGTAT
95604383 GCGTTTGAAATGGTTGATTGATAGAAATTATATTGGCATATTGATGATTGAATTAAGTTAGCATA
66 GCGTTTGAAATGGTTGATTGATAGAAATTATATTGGCATATTGATGATTGAATTAAGTTAGCATA
95604448 TTTGATAAGATATGCATATATGTGAACTTGGTAATTTAAGTAAATGTGTATACTTGATTATATGA
131 TTTGATAAGATATGCATATATGTGAACTTGGTAATTTAAGTAAATGTGTATACTTGATTATATGA
95604513 GGTATTATATCATGTATAGGACTTGATTTTGAGTTGGGTTAAATGACCTATGATAGCTTGTGAAT
196 GGTATTATATCATGTATAGGACTTGATTTTGAGTTGGGTTAAATGACCTATGATAGCTTGTGAAT
*
95604578 GTGTGAAAGTG
261 GTGTGAAACTG
* ** *
95604589 TTGGCATATAAATGCTTTAATTGTAATTAGTTATTGGAATGGCTTATGATGGATATGTTTGGTAT
1 TTGGCATATAAATGCTTTAATTGTAACTAGCCATTGGAATGGCTTATGATGAATATGTTTGGTAT
* *
95604654 GCGTTTGAAGTGGTTGATTGATAGAAATTATTTTGGCATATTGATGATTGAATTAAGTTAGCATA
66 GCGTTTGAAATGGTTGATTGATAGAAATTATATTGGCATATTGATGATTGAATTAAGTTAGCATA
** *
95604719 TTTGATAATCTATGCATATATGTGAACTTGGTAATTTAAGTAAGTGTGTATACTTGATTATATGA
131 TTTGATAAGATATGCATATATGTGAACTTGGTAATTTAAGTAAATGTGTATACTTGATTATATGA
95604784 GGTATTATATCATGTATAGGACTTGATTTTGAGTTGGGTTAAATGACCTATGATAGCTTGTGAAT
196 GGTATTATATCATGTATAGGACTTGATTTTGAGTTGGGTTAAATGACCTATGATAGCTTGTGAAT
*
95604849 GTGTTAAACTG
261 GTGTGAAACTG
95604860 TTGG
1 TTGG
95604864 TGTAGGAGGA
Statistics
Matches: 264, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
271 264 1.00
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (271 bp):
TTGGCATATAAATGCTTTAATTGTAACTAGCCATTGGAATGGCTTATGATGAATATGTTTGGTAT
GCGTTTGAAATGGTTGATTGATAGAAATTATATTGGCATATTGATGATTGAATTAAGTTAGCATA
TTTGATAAGATATGCATATATGTGAACTTGGTAATTTAAGTAAATGTGTATACTTGATTATATGA
GGTATTATATCATGTATAGGACTTGATTTTGAGTTGGGTTAAATGACCTATGATAGCTTGTGAAT
GTGTGAAACTG
Found at i:95608798 original size:2 final size:2
Alignment explanation
Indices: 95608791--95608816 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95608781 TCAAGTATTC
95608791 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
95608817 GAATGTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95612816 original size:13 final size:13
Alignment explanation
Indices: 95612798--95612827 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
95612788 CACAGTTCAC
95612798 ACTTAACAGACAT
1 ACTTAACAGACAT
95612811 ACTTAACAGACAT
1 ACTTAACAGACAT
95612824 ACTT
1 ACTT
95612828 GTGACAGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (13 bp):
ACTTAACAGACAT
Found at i:95616250 original size:19 final size:20
Alignment explanation
Indices: 95616226--95616263 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
95616216 GGTACCACCA
95616226 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
95616245 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
95616264 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:95616603 original size:93 final size:93
Alignment explanation
Indices: 95616493--95616663 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
95616483 GCCCCTAAGT
* *
95616493 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95616558 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
95616586 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95616651 CGAGTTCGGATGC
66 CGAGTTCGGATGC
95616664 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95616660 original size:46 final size:46
Alignment explanation
Indices: 95616488--95616660 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
95616478 AACCCGCCCC
* * * *
95616488 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
95616534 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
95616582 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
95616627 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95616661 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:95623819 original size:19 final size:20
Alignment explanation
Indices: 95623795--95623832 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
95623785 GGTACCACCA
95623795 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
95623814 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
95623833 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:95624172 original size:93 final size:93
Alignment explanation
Indices: 95624062--95624232 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
95624052 GCCCCTAAGT
* *
95624062 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95624127 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
95624155 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95624220 CGAGTTCGGATGC
66 CGAGTTCGGATGC
95624233 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95624229 original size:46 final size:46
Alignment explanation
Indices: 95624057--95624229 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
95624047 AACCCGCCCC
* * * *
95624057 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
95624103 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
95624151 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
95624196 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95624230 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:95625943 original size:38 final size:38
Alignment explanation
Indices: 95625900--95625981 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
95625890 TTCCTTATGA
95625900 CATGTTTTCTCATTGGTCAAGTTTTAATAAGCCTTTGT
1 CATGTTTTCTCATTGGTCAAGTTTTAATAAGCCTTTGT
95625938 CATGTTTTCTCATTGGTCAAGTTTTAATAAGCCTTTGT
1 CATGTTTTCTCATTGGTCAAGTTTTAATAAGCCTTTGT
95625976 CA-GTTT
1 CATGTTT
95625982 CAATTAATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 4 0.09
38 40 0.91
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.48
Consensus pattern (38 bp):
CATGTTTTCTCATTGGTCAAGTTTTAATAAGCCTTTGT
Found at i:95625944 original size:21 final size:21
Alignment explanation
Indices: 95625915--95625981 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
95625905 TTTCTCATTG
95625915 GTCAAGTTTTAATAAGCCTTT
1 GTCAAGTTTTAATAAGCCTTT
* * * *
95625936 GTCATGTTTT-CT---CATTG
1 GTCAAGTTTTAATAAGCCTTT
95625953 GTCAAGTTTTAATAAGCCTTT
1 GTCAAGTTTTAATAAGCCTTT
95625974 GTC-AGTTT
1 GTCAAGTTT
95625982 CAATTAATTT
Statistics
Matches: 34, Mismatches: 8, Indels: 9
0.67 0.16 0.18
Matches are distributed among these distances:
17 12 0.35
18 1 0.03
20 6 0.18
21 15 0.44
ACGTcount: A:0.22, C:0.15, G:0.16, T:0.46
Consensus pattern (21 bp):
GTCAAGTTTTAATAAGCCTTT
Found at i:95628145 original size:42 final size:42
Alignment explanation
Indices: 95628098--95628189 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
95628088 TGGCCCTTAG
* * ** *
95628098 GCCCATTTCAATATCATATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
95628140 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
95628182 GCCCATTT
1 GCCCATTT
95628190 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:95628430 original size:26 final size:26
Alignment explanation
Indices: 95628334--95628507 Score: 246
Period size: 26 Copynumber: 6.8 Consensus size: 26
95628324 CCTCTTTAAT
* * *
95628334 AACTGGGGCA-AAGCCTTTTTTAGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
***
95628359 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
95628384 AACTGGGGCA-AAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
95628409 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
95628435 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
95628461 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
95628487 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
95628508 GCACTTCCTC
Statistics
Matches: 137, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 54 0.39
26 83 0.61
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:95629391 original size:27 final size:27
Alignment explanation
Indices: 95629312--95629399 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
95629302 TATTCGTCAT
* *
95629312 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCTTACAGGGGCT-TTACGGTCTC
*
95629339 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCTTACAGGGGCTTTACGGTCTC
*
95629366 TTTACCTTACAGGGGCTTTACGGTCTT
1 TTTACCTTACAGGGGCTTTACGGTCTC
95629393 TTTACCT
1 TTTACCT
95629400 AATAGGGGTA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TTTACCTTACAGGGGCTTTACGGTCTC
Found at i:95629482 original size:27 final size:27
Alignment explanation
Indices: 95629429--95629772 Score: 244
Period size: 27 Copynumber: 12.7 Consensus size: 27
95629419 TTTCATCCTA
* * *
95629429 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** **
95629456 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** * *
95629483 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-C
* ** *
95629512 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* *
95629539 TAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** ** *
95629566 TGAGGGTATTTCAGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
95629593 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* * *
95629620 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** *
95629647 TGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
95629674 CAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** *
95629700 CTAGGGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
95629727 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
95629754 CAAGGGCATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
95629773 CTGTAAATCG
Statistics
Matches: 250, Mismatches: 60, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
26 24 0.10
27 199 0.80
28 14 0.06
29 13 0.05
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:95629637 original size:81 final size:80
Alignment explanation
Indices: 95629541--95629746 Score: 313
Period size: 81 Copynumber: 2.6 Consensus size: 80
95629531 TTGTAAATTA
* * *
95629541 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTA
*
95629606 GTAATTTTACAAACT
66 GCAATTTTACAAACT
*
95629621 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTT
*
95629686 AGCAATTTTACAGACT
65 AGCAATTTTACAAACT
** * *
95629702 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTT
95629747 TGTAAACCAA
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 41 0.36
81 74 0.64
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTA
GCAATTTTACAAACT
Found at i:95629850 original size:27 final size:27
Alignment explanation
Indices: 95629514--95629856 Score: 230
Period size: 27 Copynumber: 12.7 Consensus size: 27
95629504 TAGAAAGTCA
* * **
95629514 AGGGTATTTCT-GTAACTTTGTAAATTA
1 AGGGTATTT-TGGTAATTTTATAAATCG
* *
95629541 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTATAAATCG
** * * *
95629568 AGGGTATTTCAGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
95629594 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* *
95629621 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * *
95629649 AGGGTATTTCGGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * * *
95629675 AGGGGTATTTTAGCAATTTTACAGA-CT
1 A-GGGTATTTTGGTAATTTTATAAATCG
*
95629702 AGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTA-TAAATCG
* * *
95629729 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * *
95629756 AGGGCATTTTAGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
****
95629783 AGGGTAAAACGGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** *
95629810 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*
95629837 AGGGTACTTTGGTAATTTTA
1 AGGGTATTTTGGTAATTTTA
95629857 CAATTTGAGG
Statistics
Matches: 258, Mismatches: 50, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
26 24 0.09
27 232 0.90
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:95632928 original size:40 final size:40
Alignment explanation
Indices: 95632845--95633094 Score: 226
Period size: 40 Copynumber: 6.3 Consensus size: 40
95632835 ACCCAAGTAT
* ** * * *
95632845 CTTCGGGATTTAG-CCGGATATAACCTCTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
95632883 CTTCGGGTCTTTGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
95632923 CTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATGC
* *
95632963 CTTCGGGACTTAGCCCGGA-ATTAGTAACTGGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTCACTAGCACAAATGC
* * *
95633003 CTTCGGGACTTAGCCCAGA-ATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTCACTAGCACAAATGC
* * * *
95633043 CTTTGAGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTCACTAGCACAAATGC
95633083 CTTCGGGACTTA
1 CTTCGGGACTTA
95633095 ACCCCGTTAG
Statistics
Matches: 178, Mismatches: 27, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
38 10 0.06
39 16 0.09
40 151 0.85
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:95632979 original size:80 final size:80
Alignment explanation
Indices: 95632881--95633094 Score: 270
Period size: 80 Copynumber: 2.7 Consensus size: 80
95632871 CTCGCACAAG
* * * * * *
95632881 GCCTTCGGGTCTTTGCCCGG-ATATGGTCACTAGCATAAATGCCTTCGGGTCTTAGCCC-GGATA
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGAAT-
95632944 TAGCAACTCACACAAAT
64 TAGCAACTCACACAAAT
* *
95632961 GCCTTCGGGACTTAGCCCGGAATTAGTAACTGGCACAAATGCCTTCGGGACTTAGCCCAGAATTA
1 GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGAATTA
* *
95633026 GTAACTCGCACAAAT
66 GCAACTCACACAAAT
* * * *
95633041 GCCTTTGAGACTTAGCCCGGAATTAATCACTAGCACAAATGTCTTCGGGACTTA
1 GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTA
95633095 ACCCCGTTAG
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 111 0.96
81 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGAATTA
GCAACTCACACAAAT
Done.