Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 312 of 438
Found at i:97273499 original size:46 final size:46
Alignment explanation
Indices: 97273342--97273565 Score: 235
Period size: 46 Copynumber: 4.8 Consensus size: 46
97273332 TTATTTGTGT
* * *
97273342 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGAGA
* * *
97273388 GCCAGTGTAAGACCATGTCTGGGACATGTCATTGGC-ATTGAGACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCTA-CGAGATGAGA
* *
97273436 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATG-AGA
*
97273482 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT--GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGA
* * *
97273526 GTCAGTCTAAGACCATGTCTAGGACATGGCATCGGC-ACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGA
97273566 ATATGTGAGA
Statistics
Matches: 155, Mismatches: 14, Indels: 19
0.82 0.07 0.10
Matches are distributed among these distances:
44 10 0.06
45 17 0.11
46 72 0.46
47 32 0.21
48 23 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGA
Found at i:97273583 original size:94 final size:96
Alignment explanation
Indices: 97273349--97273587 Score: 237
Period size: 94 Copynumber: 2.6 Consensus size: 96
97273339 TGTGCCAGTG
* * * * *
97273349 TAAGACATGTCTGGGACATGCATTGGCCAC-A-TTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGAGAGCCAGTGTAAGACCATGTCTGGGA
* * *
97273412 CATGTCATTGGCATTGAGACGAGAGCTAGTG
66 CATGTCATCGGCATCGAGACGAGAGCTAGTC
* *
97273443 TAAGACATGTCTGGGACATGCATCGGCTTCGAGATGT-A-AGCCAGTGTAAGA-CATGTCTGGGA
1 TAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGAGAGCCAGTGTAAGACCATGTCTGGGA
* * *
97273505 CATG-CATCGGC-TACGAGATGTG-TC-AGTC
66 CATGTCATCGGCAT-CGAGACGAGAGCTAGTC
* *
97273533 TAAGACCATGTCTAGGACATGGCATCGGC-ACGAATATGTGAGAGCTAGTGTAAGA
1 TAAGA-CATGTCTAGGACAT-GCATCGGCTACG-AGATGTGAGAGCCAGTGTAAGA
97273588 GCGTGTTTGG
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
90 8 0.07
91 17 0.14
92 25 0.20
93 16 0.13
94 52 0.43
95 2 0.02
96 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (96 bp):
TAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGTCATCGGCATCGAGACGAGAGCTAGTC
Found at i:97276240 original size:23 final size:24
Alignment explanation
Indices: 97276201--97276246 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
97276191 AGATTAAATG
97276201 ATAATTAATTAAGATTA-AACTAT
1 ATAATTAATTAAGATTACAACTAT
*
97276224 ATAATTAAGTTTA-ATTACAACTA
1 ATAATTAA-TTAAGATTACAACTA
97276247 AACCTAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (24 bp):
ATAATTAATTAAGATTACAACTAT
Found at i:97285493 original size:11 final size:11
Alignment explanation
Indices: 97285477--97285519 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
97285467 CTAATTTAAC
*
97285477 ATAAAATCAAA
1 ATAAAATAAAA
*
97285488 ATAAAATGATAA
1 ATAAAAT-AAAA
97285500 ATAAAATAAAA
1 ATAAAATAAAA
97285511 ATAAAATAA
1 ATAAAATAA
97285520 GATTTTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:97285506 original size:5 final size:5
Alignment explanation
Indices: 97285477--97285519 Score: 50
Period size: 5 Copynumber: 7.8 Consensus size: 5
97285467 CTAATTTAAC
97285477 ATAAA ATCAAA ATAAA ATGATAA ATAAA ATAAAA ATAAA ATAA
1 ATAAA AT-AAA ATAAA AT-A-AA ATAAA AT-AAA ATAAA ATAA
97285520 GATTTTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 18 0.53
6 12 0.35
7 4 0.12
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:97293800 original size:40 final size:40
Alignment explanation
Indices: 97293743--97293885 Score: 128
Period size: 40 Copynumber: 3.6 Consensus size: 40
97293733 TTGGAATGAT
* *
97293743 ATCCGGGCTAAGTCCCGAAGGCAATT-ATGCTAG-TAATTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTAA-TAC
* * *
97293783 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTAATAC
* ** * ** *
97293823 ATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTAATAC
* *
97293863 ATTCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
97293886 AACGTGCGAA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 81 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTAATAC
Found at i:97293875 original size:80 final size:80
Alignment explanation
Indices: 97293741--97293894 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
97293731 CATTGGAATG
* * ** *
97293741 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
**
97293806 TTCGTGCGAGTTGAT
66 AACGTGCGAGTTGAT
** * * * *
97293821 ATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAAATTCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
97293886 AACGTGCGA
66 AACGTGCGA
97293895 ATCACTATAA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
AACGTGCGAGTTGAT
Found at i:97295707 original size:31 final size:31
Alignment explanation
Indices: 97295666--97295760 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
97295656 CTTTTTCATA
* **
97295666 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATATTACTGGGCCGAAGCCT
97295697 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATATTACTGGGCCGAAGCCT
*
97295728 TTTCAAGTTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATATTACTGGGCCGAAGCCT
97295759 TT
1 TT
97295761 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATATTACTGGGCCGAAGCCT
Found at i:97296005 original size:24 final size:24
Alignment explanation
Indices: 97295954--97296095 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
97295944 GCTTTATCAT
*
97295954 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
97295979 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97296003 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
97296026 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
97296050 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97296073 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97296096 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 45 0.41
24 52 0.48
25 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97296029 original size:23 final size:23
Alignment explanation
Indices: 97295975--97296094 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
97295965 CCTAGCCTCT
*
97295975 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97295998 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
97296022 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
97296045 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
97296069 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97296092 TTT
1 TTT
97296095 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:97296096 original size:47 final size:47
Alignment explanation
Indices: 97295975--97296096 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
97295965 CCTAGCCTCT
* *
97295975 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
97296022 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
97296069 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
97296097 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:97296167 original size:9 final size:9
Alignment explanation
Indices: 97296153--97296209 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
97296143 ATCTCATGTG
97296153 CATATCATA
1 CATATCATA
*
97296162 CATATCATGTG
1 CATATCA--TA
97296173 CATATCATA
1 CATATCATA
* *
97296182 CATGTCATGTG
1 CATATCA--TA
97296193 CATATCATA
1 CATATCATA
97296202 CATATCAT
1 CATATCAT
97296210 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:97296169 original size:20 final size:20
Alignment explanation
Indices: 97296141--97296211 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
97296131 ACATTTATGA
*
97296141 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
97296161 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
97296181 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
97296201 ACATATCATGT
1 ACATATCATGT
97296212 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:97296176 original size:11 final size:11
Alignment explanation
Indices: 97296146--97296200 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
97296136 TATGAACATC
97296146 TCATGTGCATA
1 TCATGTGCATA
*
97296157 TCA--TACATA
1 TCATGTGCATA
97296166 TCATGTGCATA
1 TCATGTGCATA
* *
97296177 TCA--TACATG
1 TCATGTGCATA
97296186 TCATGTGCATA
1 TCATGTGCATA
97296197 TCAT
1 TCAT
97296201 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:97303683 original size:14 final size:15
Alignment explanation
Indices: 97303652--97303684 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
97303642 GGGTTATGGA
*
97303652 TTTATGTAATTAAGG
1 TTTATGGAATTAAGG
97303667 TTTATGGAATT-AGG
1 TTTATGGAATTAAGG
97303681 TTTA
1 TTTA
97303685 AGTTGAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATGGAATTAAGG
Found at i:97308631 original size:22 final size:23
Alignment explanation
Indices: 97308597--97308646 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 23
97308587 GGAAACGGGT
97308597 AGCTCTCTTGAGCTGAA-CAGTA
1 AGCTCTCTTGAGCTGAATCAGTA
97308619 AGCTCT-TTCGAGCTGAATCAGTA
1 AGCTCTCTT-GAGCTGAATCAGTA
97308642 AGCTC
1 AGCTC
97308647 ATATGAGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 2 0.08
22 14 0.54
23 10 0.38
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (23 bp):
AGCTCTCTTGAGCTGAATCAGTA
Found at i:97308654 original size:23 final size:21
Alignment explanation
Indices: 97308601--97308655 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 21
97308591 ACGGGTAGCT
97308601 CTCT-TGAGCTGAACAGTAAG
1 CTCTATGAGCTGAACAGTAAG
*
97308621 CTCTTTCGAGCTGAATCAGTAAG
1 CTCTAT-GAGCTGAA-CAGTAAG
97308644 CTCATATGAGCT
1 CTC-TATGAGCT
97308656 ATGGTGAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.13
21 1 0.03
22 8 0.27
23 15 0.50
24 2 0.07
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (21 bp):
CTCTATGAGCTGAACAGTAAG
Found at i:97311695 original size:23 final size:22
Alignment explanation
Indices: 97311646--97311696 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
97311636 AAGCTCTATT
* *
97311646 GAGCTAAACAGTAAGCTCTTTC
1 GAGCTAAACAGTAAGCTCATAC
* *
97311668 AAGCTGAATCAGTAAGCTCATAC
1 GAGCT-AAACAGTAAGCTCATAC
97311691 GAGCTA
1 GAGCTA
97311697 TGGTGAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (22 bp):
GAGCTAAACAGTAAGCTCATAC
Found at i:97312836 original size:15 final size:15
Alignment explanation
Indices: 97312816--97312847 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
97312806 AAAATTTCTT
97312816 TACTACACTTTCACA
1 TACTACACTTTCACA
97312831 TACTACACTTTCACA
1 TACTACACTTTCACA
97312846 TA
1 TA
97312848 AATAATCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (15 bp):
TACTACACTTTCACA
Found at i:97319128 original size:22 final size:22
Alignment explanation
Indices: 97319073--97319150 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
97319063 ACGAACTAAT
* *
97319073 AACAGTAAGCTCGATTGAGTTGG
1 AACAGTAAGCTCTATTGAGCT-G
* *
97319096 AAACAGGAAGCTCTATTGACCTG
1 -AACAGTAAGCTCTATTGAGCTG
97319119 AACAGTAAGCTCT-TTCGAGCTG
1 AACAGTAAGCTCTATT-GAGCTG
97319141 AATCAGTAAG
1 AA-CAGTAAG
97319151 TTCATATGAG
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
21 2 0.04
22 19 0.41
23 8 0.17
24 17 0.37
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:97323280 original size:18 final size:18
Alignment explanation
Indices: 97323257--97323291 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97323247 AATATCATAC
97323257 ATACATATATTTATTTTA
1 ATACATATATTTATTTTA
* *
97323275 ATACATGTTTTTATTTT
1 ATACATATATTTATTTT
97323292 TAAAACATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (18 bp):
ATACATATATTTATTTTA
Found at i:97324546 original size:29 final size:30
Alignment explanation
Indices: 97324489--97324546 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
97324479 TATTTTATTG
*
97324489 TTAATTTTGTTATTATTTTAAATGCATTTA
1 TTAATTTTGTTATTATTTTAAAGGCATTTA
* *
97324519 TTAATTTT-TTATTATTTTATAGGGATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
97324547 GCTTGTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.62
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTA
Found at i:97324671 original size:11 final size:12
Alignment explanation
Indices: 97324650--97324682 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
97324640 ATATATTTTT
*
97324650 AAAATTTATATA
1 AAAATTAATATA
97324662 AAAA-TAATATA
1 AAAATTAATATA
97324673 AAAATTAATA
1 AAAATTAATA
97324683 AGGGAGGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:97325436 original size:5 final size:5
Alignment explanation
Indices: 97325426--97325501 Score: 107
Period size: 5 Copynumber: 14.4 Consensus size: 5
97325416 TTATTAAAAA
97325426 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
*
97325476 TATTCAG TATAAT TATAT TAATAT TA
1 TA-T-AT TAT-AT TATAT T-ATAT TA
97325502 ATTGTAAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
5 51 0.78
6 11 0.17
7 3 0.05
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:97327470 original size:29 final size:29
Alignment explanation
Indices: 97327438--97327540 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
97327428 GTGACGAGAT
* * *
97327438 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
97327467 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * * *
97327496 TGGCACTATGTGTGTGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
97327525 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97327541 TGATTGATAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 3 0.05
29 57 0.95
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:97329197 original size:22 final size:22
Alignment explanation
Indices: 97329172--97329224 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
97329162 ATATACAAAG
*
97329172 GTTCGCATAAAGCATTCGTAGA
1 GTTCGCATAAAGCATTCATAGA
* * * *
97329194 GTTCGCACATAGCATTTATAGG
1 GTTCGCATAAAGCATTCATAGA
97329216 GTTCGCATA
1 GTTCGCATA
97329225 GTTAAATATG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (22 bp):
GTTCGCATAAAGCATTCATAGA
Found at i:97329968 original size:16 final size:17
Alignment explanation
Indices: 97329947--97329978 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
97329937 AGATTTGACA
97329947 AAAAAATAGAA-AAATT
1 AAAAAATAGAATAAATT
97329963 AAAAAATAGAATAAAT
1 AAAAAATAGAATAAAT
97329979 AATTTCAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AAAAAATAGAATAAATT
Found at i:97330140 original size:14 final size:14
Alignment explanation
Indices: 97330121--97330160 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
97330111 TTTATTATCA
97330121 TTATTATTACTGCT
1 TTATTATTACTGCT
* *
97330135 TTATTATTATTTCT
1 TTATTATTACTGCT
97330149 TCTATTATTACT
1 T-TATTATTACT
97330161 ACTACTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.23, C:0.12, G:0.03, T:0.62
Consensus pattern (14 bp):
TTATTATTACTGCT
Found at i:97330170 original size:26 final size:26
Alignment explanation
Indices: 97330111--97330190 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
97330101 TCACCTAATT
* *
97330111 TTTATTATCATTATTATTACTGCT-T
1 TTTATTATCATTATTATTACTACTAC
*
97330136 TATTATTATTTCTTCTATTATTACTACTAC
1 T-TTATTA--TCAT-TATTATTACTACTAC
*
97330166 TTTATTATCATTATTATTATTACTA
1 TTTATTATCATTATTATTACTACTA
97330191 TCGCAATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
25 1 0.02
26 19 0.42
27 3 0.07
28 3 0.07
29 18 0.40
30 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.01, T:0.59
Consensus pattern (26 bp):
TTTATTATCATTATTATTACTACTAC
Found at i:97330187 original size:32 final size:32
Alignment explanation
Indices: 97330112--97330187 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 32
97330102 CACCTAATTT
* * * *
97330112 TTATTATCATTATTATTACTGCTTTATTATTA
1 TTATTATTATTATTACTACTACTTTATTATCA
97330144 TT-TCT-TCTATTATTACTACTACTTTATTATCA
1 TTAT-TAT-TATTATTACTACTACTTTATTATCA
97330176 TTATTATTATTA
1 TTATTATTATTA
97330188 CTATCGCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
31 2 0.06
32 32 0.89
33 2 0.06
ACGTcount: A:0.28, C:0.12, G:0.01, T:0.59
Consensus pattern (32 bp):
TTATTATTATTATTACTACTACTTTATTATCA
Found at i:97337003 original size:55 final size:55
Alignment explanation
Indices: 97336883--97337004 Score: 131
Period size: 55 Copynumber: 2.2 Consensus size: 55
97336873 GAGCCTGCCA
* * * *
97336883 AAAC-AACACGGGCGTGTGACACGCCCATGTGGAAGACCCGTGGTTGAAACTGAG
1 AAACTAACACGGGCGTGCGACACGCCCATGTCGAACACCCGTGGTTCAAACTGAG
* * * **
97336937 AAACTAGCACGGGCGTGCGACACGCCCGTGTCTAACACCCGTGG-TCAAACCTGTT
1 AAACTAACACGGGCGTGCGACACGCCCATGTCGAACACCCGTGGTTCAAA-CTGAG
*
97336992 AAATTAACACGGG
1 AAACTAACACGGG
97337005 TGTGGGAGAA
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
54 8 0.15
55 47 0.85
ACGTcount: A:0.29, C:0.27, G:0.28, T:0.16
Consensus pattern (55 bp):
AAACTAACACGGGCGTGCGACACGCCCATGTCGAACACCCGTGGTTCAAACTGAG
Found at i:97337484 original size:23 final size:23
Alignment explanation
Indices: 97337458--97337503 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97337448 TGAGGAAACT
*
97337458 TCATACCCATGATTTTACCATGC
1 TCATACCCATGATATTACCATGC
* * *
97337481 TCATTCTCATGATATTCCCATGC
1 TCATACCCATGATATTACCATGC
97337504 CAATATCTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.37
Consensus pattern (23 bp):
TCATACCCATGATATTACCATGC
Found at i:97352756 original size:47 final size:47
Alignment explanation
Indices: 97352702--97353586 Score: 1374
Period size: 47 Copynumber: 18.6 Consensus size: 47
97352692 TATTTGAATA
* *
97352702 AATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
97352749 AATGTGAAAGTGTATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA--G--TGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97352800 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97352849 AATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97352896 AATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97352943 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97352992 AATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97353039 AATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
97353086 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
97353135 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
** *
97353182 AATGCAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97353229 AATCTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
97353276 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
97353323 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97353370 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
97353419 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
97353466 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97353513 AATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
97353560 AATGTGAAAGTGTATAAATGTAATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
97353587 TCCCAAAGGG
Statistics
Matches: 767, Mismatches: 59, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
47 549 0.72
49 175 0.23
51 43 0.06
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:97352974 original size:143 final size:143
Alignment explanation
Indices: 97352699--97353586 Score: 1514
Period size: 143 Copynumber: 6.2 Consensus size: 143
97352689 GTATATTTGA
*
97352699 ATAAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G--T
97352764 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
62 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
97352829 GCCTAATGGCCAACGTG
127 GCCTAATGGCCAACGTG
*
97352846 ATAAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
97352911 ATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
97352976 AATGGCCAACGTG
131 AATGGCCAACGTG
*
97352989 ATAAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
97353054 ATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
97353119 AATGGCCAACGTG
131 AATGGCCAACGTG
* * * **
97353132 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCAAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
97353197 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTGAAAGTG--TATATATGTGATAAGGCCG
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
*
97353260 AATGGCCAATGTG
131 AATGGCCAACGTG
*
97353273 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
97353338 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
97353403 AATGGCCAACGTG
131 AATGGCCAACGTG
97353416 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
97353481 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAAAGTG--TATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* *
97353544 AATGGCCGATGTG
131 AATGGCCAACGTG
* * *
97353557 ATGAATGTGAAAGTGTATAAATGTAATAAG
1 ATAAATGTGAAAGTGTATATATGTGATAAG
97353587 TCCCAAAGGG
Statistics
Matches: 706, Mismatches: 33, Indels: 10
0.94 0.04 0.01
Matches are distributed among these distances:
141 189 0.27
143 459 0.65
145 1 0.00
147 57 0.08
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (143 bp):
ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCAACGTG
Found at i:97353068 original size:190 final size:188
Alignment explanation
Indices: 97352702--97353586 Score: 1383
Period size: 190 Copynumber: 4.6 Consensus size: 188
97352692 TATTTGAATA
* *
97352702 AATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--G--TGTA
97352767 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* * *
97352832 TAATGGCCAACGTGATAAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
125 TAATGGCCAACGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
97352896 AATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * * *
97352961 TATGTGATAAGGCCTAATGGCCAACGTGATAAATGCGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * * *
97353026 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATG
129 GGCCAACGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
97353086 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
**
97353151 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGCAAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * * *
97353216 GGCCGATGTGATGAATCTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
129 GGCCAACGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
97353276 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
97353341 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
* *
97353406 GGCCAACGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 GGCCAACGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
97353466 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
97353531 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTAATAAG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
97353587 TCCCAAAGGG
Statistics
Matches: 646, Mismatches: 39, Indels: 18
0.92 0.06 0.03
Matches are distributed among these distances:
188 103 0.16
190 401 0.62
192 88 0.14
194 54 0.08
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (188 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCAACGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:97353178 original size:22 final size:22
Alignment explanation
Indices: 97353152--97353274 Score: 59
Period size: 22 Copynumber: 5.3 Consensus size: 22
97353142 AAGTGTATAT
97353152 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* ** ***
97353174 ATGTGATGAATGCAAAAGTGTATA
1 ATGTGAT-AAGGCCGAA-TGGCCA
* *
97353198 TATGTGATAAGGCCTAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
97353221 ATGTGATGAA-TCTGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
97353245 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
97353268 ATGTGAT
1 ATGTGAT
97353275 GAATGTGAAA
Statistics
Matches: 68, Mismatches: 25, Indels: 16
0.62 0.23 0.15
Matches are distributed among these distances:
22 22 0.32
23 15 0.22
24 15 0.22
25 16 0.24
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:97355254 original size:133 final size:132
Alignment explanation
Indices: 97354980--97355275 Score: 360
Period size: 132 Copynumber: 2.2 Consensus size: 132
97354970 ATCACGGCAG
* * * * * *
97354980 ATCTCATCTCCCTAAAGTTACAATGGAACATGTTAAAGTTGCAAGTCTTATCTCCCTCAAGTTGT
1 ATCTCATCTTCCTAAAGTTACAGTGGAGCAGGTTAAAGTTACAAGTCTAATCTCCCTCAAGTTGT
* * *
97355045 AGTAGAGTAGACCGAAGATGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTAC
66 AGTAGAGCAGACCGAAGATGCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTAC
97355110 AA
131 AA
* * * * * *
97355112 ACCAT-ATCTTCCTGAAGTTACAGTGGAGTAGGTTGAAGTTACAAGTCTAATCTCCTTGAAGTTG
1 ATC-TCATCTTCCTAAAGTTACAGTGGAGCAGGTTAAAGTTACAAGTCTAATCTCCCTCAAGTTG
* * ** *
97355176 TAGTGGAGCAGACTGAAGATAGCAAAACTTATCTTTCTGAATTTGCAATAGAGCAGATTAAAGCT
65 TAGTAGAGCAGACCGAAGAT-GCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCT
97355241 ACAA
129 ACAA
* * *
97355245 GTCTCATCTTCCTAAAGTTGCAGCGGAGCAG
1 ATCTCATCTTCCTAAAGTTACAGTGGAGCAG
97355276 ACTAAAGCCA
Statistics
Matches: 135, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
132 68 0.50
133 67 0.50
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (132 bp):
ATCTCATCTTCCTAAAGTTACAGTGGAGCAGGTTAAAGTTACAAGTCTAATCTCCCTCAAGTTGT
AGTAGAGCAGACCGAAGATGCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTAC
AA
Found at i:97355302 original size:133 final size:132
Alignment explanation
Indices: 97355026--97355316 Score: 332
Period size: 133 Copynumber: 2.2 Consensus size: 132
97355016 AGTTGCAAGT
* * * * *
97355026 CTTATCTCCCTCAAGTTGTAGTAGAGTAGACCGAAGATGCAAATCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCTTGAAGTTGTAGTAGAGCAGACCGAAGATGCAAAACTTATCTCCCTGAAGTTGCAA
* * * ** * **
97355091 TAGAGCAGATTAAAGCTACAAACCATATCTTCCTGAAGTTACAGTGGAGTAGGTTGAAGTTACAA
66 TAGAGCAGATTAAAGCTACAAACCATATCTTCCTAAAGTTACAGCGGAGCAGACTAAAGCCACAA
**
97355156 GT
131 AC
* * * ** *
97355158 CTAATCTCCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAAACTTATCTTTCTGAATTTGCA
1 CTTATCTCCTTGAAGTTGTAGTAGAGCAGACCGAAGAT-GCAAAACTTATCTCCCTGAAGTTGCA
** *
97355223 ATAGAGCAGATTAAAGCTACAAGTC-TCATCTTCCTAAAGTTGCAGCGGAGCAGACTAAAGCCAC
65 ATAGAGCAGATTAAAGCTACAAACCAT-ATCTTCCTAAAGTTACAGCGGAGCAGACTAAAGCCAC
97355287 AAAC
129 AAAC
*
97355291 CTTATCTCCTTGAAGTTGCAGTAGAG
1 CTTATCTCCTTGAAGTTGTAGTAGAG
97355317 TAGGTTAAAG
Statistics
Matches: 130, Mismatches: 27, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
132 33 0.25
133 97 0.75
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (132 bp):
CTTATCTCCTTGAAGTTGTAGTAGAGCAGACCGAAGATGCAAAACTTATCTCCCTGAAGTTGCAA
TAGAGCAGATTAAAGCTACAAACCATATCTTCCTAAAGTTACAGCGGAGCAGACTAAAGCCACAA
AC
Found at i:97355357 original size:44 final size:44
Alignment explanation
Indices: 97355065--97355357 Score: 239
Period size: 44 Copynumber: 6.6 Consensus size: 44
97355055 ACCGAAGATG
*
97355065 CAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
1 CAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * * * * * * *
97355109 CAAACCATATCTTCCTGAAGTTACAGTGGAGTAGGTTGAAGTTA
1 CAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * * * * * *
97355153 CAAGTCTAATC-TCCTTGAAGTTGTAGTGGAGCAGACTGAAGATA
1 CAAATCTTATCTTCC-TGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * * *
97355197 GCAAAACTTATCTTTCTGAATTTGCAATAGAGCAGATTAAAGCTA
1 -CAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * * ** * *
97355242 CAAGTCTCATCTTCCTAAAGTTGCAGCGGAGCAGACTAAAGCCA
1 CAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * * *
97355286 CAAACCTTATC-TCCTTGAAGTTGCAGTAGAGTAGGTTAAAGTTA
1 CAAATCTTATCTTCC-TGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * *
97355330 CAAGTCTTATCTTCCTGAGGTTACAGTA
1 CAAATCTTATCTTCCTGAAGTTGCAGTA
97355358 AGTTAGAACA
Statistics
Matches: 188, Mismatches: 56, Indels: 10
0.74 0.22 0.04
Matches are distributed among these distances:
43 6 0.03
44 147 0.78
45 33 0.18
46 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (44 bp):
CAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
Found at i:97356965 original size:21 final size:21
Alignment explanation
Indices: 97356918--97356969 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
97356908 TATATTTTTT
* *
97356918 CTATTTTATTCTTTCTTTTAA
1 CTATTTTATTTTTTCCTTTAA
*
97356939 CT-TTTTATTTTTTCCTTTAT
1 CTATTTTATTTTTTCCTTTAA
*
97356959 TTATTTTATTT
1 CTATTTTATTT
97356970 ATGCTTCCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (21 bp):
CTATTTTATTTTTTCCTTTAA
Found at i:97362939 original size:49 final size:49
Alignment explanation
Indices: 97362879--97363001 Score: 129
Period size: 49 Copynumber: 2.5 Consensus size: 49
97362869 TGTGTGTCAA
* * *
97362879 TGTAAGGCCTGTCTGGGACATGGCATCGACAGCGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACAGCGATAGATAAAAGCCAG
* * * * * ** * *
97362928 TGTAAGACCTGTCTGGGATACGACATTGGCCTCGATATATAAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACAGCGATAGATAAAAGCCAG
97362977 TGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACC-TGTCTGGGACATGGC
97363002 GTCAGCATCT
Statistics
Matches: 58, Mismatches: 15, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
49 46 0.79
50 12 0.21
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACAGCGATAGATAAAAGCCAG
Found at i:97370035 original size:2 final size:2
Alignment explanation
Indices: 97370028--97370059 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
97370018 TAGGTACGTA
97370028 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97370060 GCATAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97370131 original size:9 final size:9
Alignment explanation
Indices: 97370117--97370143 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
97370107 CACACACTAA
97370117 TAATAATAG
1 TAATAATAG
97370126 TAATAATAG
1 TAATAATAG
97370135 TAATAATAG
1 TAATAATAG
97370144 AAAGATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (9 bp):
TAATAATAG
Found at i:97370406 original size:21 final size:21
Alignment explanation
Indices: 97370381--97370429 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
97370371 TATATATTCG
* *
97370381 TAATATATAAAAACGTATATA
1 TAATATATAAAAACATATACA
*
97370402 TAATAT-T-AAAACATTTACA
1 TAATATATAAAAACATATACA
97370421 TAATATATA
1 TAATATATA
97370430 CACACATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 15 0.65
20 2 0.09
21 6 0.26
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (21 bp):
TAATATATAAAAACATATACA
Found at i:97370529 original size:23 final size:22
Alignment explanation
Indices: 97370482--97370537 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
97370472 AACAATACTA
*
97370482 ATAT-TACATAAAGATATACCT
1 ATATATACATAAAGATATAACT
97370503 ATATATACATTAAAGATATATAC-
1 ATATATACA-TAAAGATATA-ACT
97370526 ATATATA-ATAAA
1 ATATATACATAAA
97370538 ATACATGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 8 0.26
22 5 0.16
23 17 0.55
24 1 0.03
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.34
Consensus pattern (22 bp):
ATATATACATAAAGATATAACT
Found at i:97370785 original size:15 final size:15
Alignment explanation
Indices: 97370765--97370798 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
97370755 TGATAGTGAA
*
97370765 AATAATAGATATAAT
1 AATAATAGAAATAAT
*
97370780 AATAATAGAAATGAT
1 AATAATAGAAATAAT
97370795 AATA
1 AATA
97370799 CTGTATGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (15 bp):
AATAATAGAAATAAT
Found at i:97370992 original size:16 final size:16
Alignment explanation
Indices: 97370960--97370997 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
97370950 AATATACACA
*
97370960 AATATATAAAAATAAT
1 AATATATAAAAACAAT
97370976 AATAT-TAAATAACAAT
1 AATATATAAA-AACAAT
97370992 AATATA
1 AATATA
97370998 ATAATAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
AATATATAAAAACAAT
Found at i:97372769 original size:49 final size:49
Alignment explanation
Indices: 97372713--97372839 Score: 125
Period size: 49 Copynumber: 2.6 Consensus size: 49
97372703 TGTTGTGTGT
* *
97372713 CAGTGTAAGACCTATCTAGGACATGGCATC-GACAC-CGGTAGATAGGAA-C
1 CAGTGTAAGACCTATCTAGGACATGGCATCAG-C-CTCGATAGATA-AAAGC
* * * * * *
97372762 CAGTGTAAGACTTGTCTGGGACACGGCATCAGCCTCGATATATAAAAGT
1 CAGTGTAAGACCTATCTAGGACATGGCATCAGCCTCGATAGATAAAAGC
*
97372811 CAGTGTAAGACCTTTCTAGGACATGGCAT
1 CAGTGTAAGACCTATCTAGGACATGGCAT
97372840 TAACTTTGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
48 3 0.05
49 59 0.94
50 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTAGGACATGGCATCAGCCTCGATAGATAAAAGC
Found at i:97378528 original size:5 final size:5
Alignment explanation
Indices: 97378518--97378555 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
97378508 TTACTAAACA
*
97378518 TATAT TATAT TGTAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
97378556 TGTTGAAGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:97385744 original size:37 final size:37
Alignment explanation
Indices: 97385694--97385770 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
97385684 CATAAATTAG
* *
97385694 AATATCTAAATTTGTATAATACATGGACAAAAATATT
1 AATATCTAAATTTGTATAATACAAGGACAAAAATAAT
97385731 AATATCTAAATTTGTATAATACAAGGACAAAAATAAT
1 AATATCTAAATTTGTATAATACAAGGACAAAAATAAT
97385768 AAT
1 AAT
97385771 TCAACTGGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (37 bp):
AATATCTAAATTTGTATAATACAAGGACAAAAATAAT
Found at i:97388390 original size:20 final size:19
Alignment explanation
Indices: 97388343--97388392 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
97388333 ACAAAGGAAC
*
97388343 CGAAGTGCAGACAGAGGCA
1 CGAAGTGCAAACAGAGGCA
*
97388362 CAAATGTGCAAACAGAGGCA
1 CGAA-GTGCAAACAGAGGCA
97388382 CTGAAGTGCAA
1 C-GAAGTGCAA
97388393 TCCCGTACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 3 0.12
20 21 0.81
21 2 0.08
ACGTcount: A:0.40, C:0.20, G:0.30, T:0.10
Consensus pattern (19 bp):
CGAAGTGCAAACAGAGGCA
Found at i:97392774 original size:27 final size:27
Alignment explanation
Indices: 97392681--97392799 Score: 116
Period size: 27 Copynumber: 4.4 Consensus size: 27
97392671 CCATAAAATA
* * * * *
97392681 GGTAAAATGATCGTAATTCTCTTATAG
1 GGTAAAATGACCGTAATGCCCATGTAG
* *
97392708 GGTAAAATGACTGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCATGTAG
*
97392735 GGTAAAATGACCGTAATGGCCATGTAG
1 GGTAAAATGACCGTAATGCCCATGTAG
* *
97392762 GGTAAAATAACCGTAACAT-CCC-TGTAT
1 GGTAAAATGACCGT-A-ATGCCCATGTAG
97392789 GGTAAAATGAC
1 GGTAAAATGAC
97392800 AATTATGCCC
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 73 0.94
28 3 0.04
29 2 0.03
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCATGTAG
Found at i:97396339 original size:50 final size:49
Alignment explanation
Indices: 97396265--97396396 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 49
97396255 CATGATGTGT
* * * * * *
97396265 CAGTATAAGACCCTATCTGAGACATGGCATCAGCACGGATACATGGGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGGA-ACATGAGAGC
* * ** *
97396315 CAGTGTAAGACTATGTGTGGGACATGGCATCA--ACTTAACGTGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGGAACATGAGAGC
97396362 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
97396397 TTATACCCTA
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
47 37 0.55
48 3 0.04
49 1 0.01
50 26 0.39
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGGAACATGAGAGC
Found at i:97397963 original size:41 final size:41
Alignment explanation
Indices: 97397913--97398000 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
97397903 GTGTGACGAC
*
97397913 TCCTAATAAGATAAATTGTGTTTTATTCATATAGTAAATGGA
1 TCCT-ATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
97397955 TCCTATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
1 TCCTATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
97397996 TCCTA
1 TCCTA
97398001 ACGTAGCTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 41 0.91
42 4 0.09
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (41 bp):
TCCTATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
Found at i:97403957 original size:46 final size:45
Alignment explanation
Indices: 97403872--97403986 Score: 119
Period size: 46 Copynumber: 2.6 Consensus size: 45
97403862 GACGAGAGCA
* * * *
97403872 AGTATAAGA-TATGTTTGGGACATGCATCAGCCTCTTGATGTAAGCC
1 AGTATAAGACCATGTCTAGGACATGCATCAGCCTCATGATGT--GCC
* *
97403918 AGTGTAAGA-CATGTCTAGGACATGCATCAG-CTACATGATGTGTC
1 AGTATAAGACCATGTCTAGGACATGCATCAGCCT-CATGATGTGCC
*
97403962 AGTATAAGACCGTGTCTAGGACATG
1 AGTATAAGACCATGTCTAGGACATG
97403987 GAATCGGCAC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
44 10 0.17
45 16 0.27
46 33 0.56
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (45 bp):
AGTATAAGACCATGTCTAGGACATGCATCAGCCTCATGATGTGCC
Found at i:97412759 original size:14 final size:14
Alignment explanation
Indices: 97412740--97412767 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97412730 CCTAACTTAA
97412740 AATTGATCAAAACT
1 AATTGATCAAAACT
97412754 AATTGATCAAAACT
1 AATTGATCAAAACT
97412768 TCTACTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AATTGATCAAAACT
Found at i:97424656 original size:17 final size:17
Alignment explanation
Indices: 97424634--97424666 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
97424624 TGATGGTTGC
97424634 ATTTATTAATAACATGT
1 ATTTATTAATAACATGT
97424651 ATTTATTAATAACATG
1 ATTTATTAATAACATG
97424667 AAATTCTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (17 bp):
ATTTATTAATAACATGT
Found at i:97433118 original size:30 final size:30
Alignment explanation
Indices: 97433082--97433169 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
97433072 TCATCATATT
*
97433082 ACAAACTTTCAAGTATTTCGGGACCATAAC
1 ACAAACTTTCAAGTATTTCGGGATCATAAC
* * *
97433112 ACAAACTTTCAAGTATTTCAGGATTATATC
1 ACAAACTTTCAAGTATTTCGGGATCATAAC
*
97433142 ACAAACTTTCAATTATTTCGGGATCATA
1 ACAAACTTTCAAGTATTTCGGGATCATA
97433170 TAATTCATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.33
Consensus pattern (30 bp):
ACAAACTTTCAAGTATTTCGGGATCATAAC
Found at i:97433536 original size:23 final size:23
Alignment explanation
Indices: 97433496--97433541 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
97433486 GAGTTCAAGT
97433496 GAGCTATATCAGGAAGCCCATAA
1 GAGCTATATCAGGAAGCCCATAA
97433519 GAGCTTATATCAGG-AGCCCATAA
1 GAGC-TATATCAGGAAGCCCATAA
97433542 TAGATAACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (23 bp):
GAGCTATATCAGGAAGCCCATAA
Found at i:97437113 original size:49 final size:49
Alignment explanation
Indices: 97437057--97437271 Score: 342
Period size: 49 Copynumber: 4.4 Consensus size: 49
97437047 TACATATATG
* *
97437057 TGTGATAAGG-CTGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
97437106 TGTGATAAGGCCTAAAGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
97437155 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* * *
97437204 TGTGATGAGACCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
97437253 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
97437272 TAATGTAAAA
Statistics
Matches: 156, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
49 154 0.99
50 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:97437430 original size:37 final size:37
Alignment explanation
Indices: 97437373--97437456 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
97437363 GGAATATGTT
*
97437373 CCGGGTGAGA-CCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
97437409 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
97437446 CCGGGTAAGAC
1 CCGGGTAAGAC
97437457 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 9 0.20
37 36 0.80
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:97448839 original size:48 final size:48
Alignment explanation
Indices: 97448787--97448914 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
97448777 CTCGCACACT
* * *
97448787 AAGTGCCAATATCATGGCCCGAAGCCAACTCAAT-ATATCTCGCA-TCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGA-AGCTCACACT-CA
* * * * *
97448835 AAGTGCTAATATCAGGGCCTGAACCCAAATCAATGAAGCTCACACTCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACTCA
97448883 AAGTGCCAATA-CATGGCCCGAAGCCAAATCAA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAA
97448915 AGTATCCCCT
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
47 18 0.27
48 46 0.70
49 2 0.03
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.18
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACTCA
Found at i:97456387 original size:21 final size:21
Alignment explanation
Indices: 97456353--97456399 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
97456343 GTGGCTCAGA
* *
97456353 ACATGGCCGTGTGGCTACTCC
1 ACATGCCCGAGTGGCTACTCC
* *
97456374 ACATGCCCGAGTGGCTATTTC
1 ACATGCCCGAGTGGCTACTCC
97456395 ACATG
1 ACATG
97456400 TCTGTGTACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.30, G:0.26, T:0.26
Consensus pattern (21 bp):
ACATGCCCGAGTGGCTACTCC
Found at i:97458292 original size:2 final size:2
Alignment explanation
Indices: 97458285--97458311 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97458275 ACATGCTTGC
97458285 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
97458312 ATCTTACAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97459747 original size:12 final size:14
Alignment explanation
Indices: 97459730--97459761 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
97459720 ATGAGAACAC
97459730 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
97459742 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
97459756 ATGTGT
1 ATGTGT
97459762 TTAAGATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:97459847 original size:50 final size:50
Alignment explanation
Indices: 97459783--97460109 Score: 359
Period size: 50 Copynumber: 6.5 Consensus size: 50
97459773 TTAGGTTATG
* *
97459783 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * * * * * **
97459833 TGTGTAGTACTAAGTGCGGGCTACTATGCGTACCCGATAGTTTCAA-TCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-AT-AAGTCACA
* * * * * *
97459884 TGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * *
97459934 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * * **
97459984 TATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * * **
97460034 TGTGTAGTACTAAATGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
*
97460084 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
97460110 TACGTACTAG
Statistics
Matches: 229, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
49 1 0.00
50 190 0.83
51 36 0.16
52 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
Found at i:97459921 original size:101 final size:100
Alignment explanation
Indices: 97459727--97460109 Score: 376
Period size: 100 Copynumber: 3.8 Consensus size: 100
97459717 GTTATGAGAA
* * * *** * * *
97459727 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATAGTTTTAGGTTATGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG--ATAGATCATGTGTGTAGTA
* *
97459792 CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGT
64 CTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
* * * *
97459829 CGCATGTGTAGTACTAAGTGCGGGCTACTATGCGTACCCGATAGTTTCA-ATCATGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG-AT-AGATCATGTGTGTAGTA
* * *
97459893 CTAAGTGTAGGCTACTACATGTATCAGATGGTTAGGT
64 CTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
* * * *** *
97459930 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATATGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGATAGATCATGTGTGTAGTACT
*
97459995 AAGTGCAGGCTACTACGTGTATCAGATGGATAAGT
66 AAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
** * * * * * *
97460030 CATGTGTGTAGTACTAAATGTAGGCTACTACGTGTACCAGATTGATAGGT--TGCATGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGATAGATCATG--TGTGTAGTA
*
97460093 CTAAGTGTAGGCTACTA
64 CTAAGTGCAGGCTACTA
97460110 TACGTACTAG
Statistics
Matches: 237, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
99 1 0.00
100 113 0.48
101 87 0.37
102 36 0.15
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGATAGATCATGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
Found at i:97460006 original size:151 final size:150
Alignment explanation
Indices: 97459731--97460110 Score: 483
Period size: 151 Copynumber: 2.5 Consensus size: 150
97459721 TGAGAACACA
* * * * * **
97459731 TGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATAGTTTTAGGTTATGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGAT-G-GTTAGGTTACATGTGTAGTACTAA
* * * * *
97459796 GTGCAGGCTACTACGTGTACCAGATTGTTAAGTCGCATGTGTAGTACTAAGTGCGGGCTACTATG
64 GTGCAGGCTACTATGTGTACCAGATTGATAAGTCGCATATGTAGTACTAAGTGCAGGCTACTACG
* **
97459861 CGTACCCGATAGTTTCAA-TCATG
129 CGTACCAGAT-GGAT-AAGTCATG
* *
97459884 TGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTTACATGTGTAGTACTAAGT
* *
97459949 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCATATGTAGTACTAAGTGCAGGCTACTACGTG
66 GCAGGCTACTATGTGTACCAGATTGATAAGTCGCATATGTAGTACTAAGTGCAGGCTACTACGCG
*
97460014 TATCAGATGGATAAGTCATG
131 TACCAGATGGATAAGTCATG
* * * * *
97460034 TGTGTAGTACTAAATGTAGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTTACATGTGTAGTACTAAGT
*
97460099 GTAGGCTACTAT
66 GCAGGCTACTAT
97460111 ACGTACTAGA
Statistics
Matches: 198, Mismatches: 28, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
149 2 0.01
150 76 0.38
151 86 0.43
152 1 0.01
153 33 0.17
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (150 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTTACATGTGTAGTACTAAGT
GCAGGCTACTATGTGTACCAGATTGATAAGTCGCATATGTAGTACTAAGTGCAGGCTACTACGCG
TACCAGATGGATAAGTCATG
Found at i:97460022 original size:100 final size:100
Alignment explanation
Indices: 97459783--97460109 Score: 413
Period size: 100 Copynumber: 3.3 Consensus size: 100
97459773 TTAGGTTATG
* * *
97459783 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGT
* * * * * * ***
97459848 GCGGGCTACTATGCGTACCCGATAGTTTCA-ATCATG
66 GCAGGCTACTATGTGTACCAGATTG-AT-AGGTCGCA
* * *
97459884 TGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGT
97459949 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
66 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * ** *
97459984 TATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCATGTGTGTAGTACTAAAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGT
* * *
97460049 GTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
66 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
*
97460084 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
97460110 TACGTACTAG
Statistics
Matches: 197, Mismatches: 28, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
99 1 0.01
100 116 0.59
101 80 0.41
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
Found at i:97461674 original size:47 final size:46
Alignment explanation
Indices: 97461612--97461780 Score: 180
Period size: 47 Copynumber: 3.6 Consensus size: 46
97461602 GACAAGGGCT
* *
97461612 AGTGTAAGACGTGTCTGGGACATGTATCAGCCACATTATGATAGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCAGCCACATGATGATAGCC
* * * * *
97461658 AGTGTAAGATCATGTCTGGGATATGGCATCGGCGTA-AAGATGAGT-GCC
1 AGTGTAAGA-CGTGTCTGGGACAT-GCATCAGC-CACATGATGA-TAGCC
* *
97461706 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTCAATGATGGTAGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCAGCCAC-ATGATGATAGCC
* *
97461753 AGTGTAAGATGTGTCTGGGACATACATC
1 AGTGTAAGACGTGTCTGGGACATGCATC
97461781 GGCTAAGCTT
Statistics
Matches: 100, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
46 17 0.17
47 58 0.58
48 23 0.23
49 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACGTGTCTGGGACATGCATCAGCCACATGATGATAGCC
Found at i:97461721 original size:94 final size:93
Alignment explanation
Indices: 97461560--97461825 Score: 304
Period size: 94 Copynumber: 2.8 Consensus size: 93
97461550 TTTATGTGAG
* * * * * *
97461560 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACAAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGC--TAAGATAAGTGCTAGTGTAAGACGTG
* *
97461625 TCTGGGACATGTATCAGCCAC-ATTATGAT
64 TCTGGGACATGCATCAGCCACAATGATGAT
* * *
97461654 AGCCAGTGTAAGATCATGTCTGGGATATGGCATCGGCGTAAAGATGAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGC-T-AAGATAAGTGCTAGTGTAAGACGTG
* *
97461719 TCTGGGACATGCATCAGCCTCAATGATGGT
64 TCTGGGACATGCATCAGCCACAATGATGAT
* * * ** *
97461749 AGCCAGTGTAAGAT-GTGTCTGGGACAT-ACATCGGCTAAGCTTCGTGCTAGTGTAAGACATGTC
1 AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCTAAGATAAGTGCTAGTGTAAGACGTGTC
97461812 TGGGACATGCATCA
66 TGGGACATGCATCA
97461826 ACACTTATAC
Statistics
Matches: 148, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
91 36 0.24
92 1 0.01
93 8 0.05
94 83 0.56
95 20 0.14
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (93 bp):
AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCTAAGATAAGTGCTAGTGTAAGACGTGTC
TGGGACATGCATCAGCCACAATGATGAT
Found at i:97461812 original size:44 final size:44
Alignment explanation
Indices: 97461612--97461824 Score: 160
Period size: 47 Copynumber: 4.6 Consensus size: 44
97461602 GACAAGGGCT
* * * * *
97461612 AGTGTAAGACGTGTCTGGGACATGTATCAGCCACA-TTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAAGTTA-G-T-GCC
* *
97461658 AGTGTAAGATCATGTCTGGGATATGGCATCGGCGTAAAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAAAG-TTAGTGCC
* * * * *
97461706 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTCAATGATGGTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCT-AAAGTTAGT-GCC
** * * *
97461753 AGTGTAAGATGTGTCTGGGACATACATCGGCT-AAGCTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAAG-TTAGTGCC
97461797 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
97461825 AACACTTATA
Statistics
Matches: 134, Mismatches: 24, Indels: 20
0.75 0.13 0.11
Matches are distributed among these distances:
44 29 0.22
45 3 0.02
46 20 0.15
47 58 0.43
48 18 0.13
49 3 0.02
50 1 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTAAAGTTAGTGCC
Found at i:97464401 original size:20 final size:20
Alignment explanation
Indices: 97464373--97464415 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
97464363 CATATAAAGA
* *
97464373 AAAACTTATAATTATTTTTT
1 AAAACTTATAATGAATTTTT
* *
97464393 AAAATTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
97464413 AAA
1 AAA
97464416 GTCAGAACAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
AAAACTTATAATGAATTTTT
Found at i:97465342 original size:45 final size:46
Alignment explanation
Indices: 97465278--97465448 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 46
97465268 AACCCGCCCC
*
97465278 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GTTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGTTTCGCATCCA
*
97465323 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G--T--TTCGCATCCA
* * **
97465371 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGTTTCGCATCCA
97465416 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97465449 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 62 0.57
47 30 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGTTTCGCATCCA
Found at i:97465394 original size:92 final size:92
Alignment explanation
Indices: 97465283--97465451 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
97465273 GCCCCTAAGT
**
97465283 GAACTCGGACTCAACTCAACGAGCTCGG-GTTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
97465347 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97465375 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
97465440 GAGTTCGGATGC
66 GAGTTCGGATGC
97465452 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 62 0.85
93 11 0.15
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97465903 original size:30 final size:30
Alignment explanation
Indices: 97465869--97465928 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97465859 ATTTAATACG
97465869 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97465899 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97465929 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97471851 original size:28 final size:29
Alignment explanation
Indices: 97471753--97471851 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
97471743 TCACAAATTG
* *
97471753 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
97471782 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
97471810 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
97471838 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
97471852 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:97475847 original size:93 final size:93
Alignment explanation
Indices: 97475740--97475910 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
97475730 GCCCCTAAGT
* *
97475740 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97475805 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97475833 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97475898 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97475911 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97475907 original size:46 final size:46
Alignment explanation
Indices: 97475735--97475907 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
97475725 AACCCGCCCC
* * *
97475735 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
97475781 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
97475829 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
97475874 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97475908 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:97476363 original size:30 final size:30
Alignment explanation
Indices: 97476329--97476388 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97476319 ATTTAATACG
97476329 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97476359 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97476389 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97483263 original size:45 final size:46
Alignment explanation
Indices: 97483212--97483382 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
97483202 AACCCGCCCC
*
97483212 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
97483257 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCA
* * *
97483305 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
97483350 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97483383 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:97483374 original size:92 final size:92
Alignment explanation
Indices: 97483217--97483385 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
97483207 GCCCCTAAGT
*
97483217 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
97483282 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
97483309 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97483373 CGAGTTCGGATGC
65 CGAGTTCGGATGC
97483386 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 62 0.84
93 12 0.16
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97483838 original size:30 final size:29
Alignment explanation
Indices: 97483804--97483862 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
97483794 ATTTAATACG
97483804 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTGCCCCTA
* * *
97483834 AACTTTTGCATAATTACACTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTGCCCCTA
97483863 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTGCCCCTA
Found at i:97489042 original size:47 final size:46
Alignment explanation
Indices: 97488927--97489056 Score: 151
Period size: 47 Copynumber: 2.8 Consensus size: 46
97488917 GGTAATGTGA
97488927 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGAC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGAC
* * *
97488973 GAGGGCTAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCTACATT-ACGAC
1 GA--GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--AAATTGA-GAC
97489022 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
97489057 GCGTAGAGAT
Statistics
Matches: 71, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
46 18 0.25
47 28 0.39
48 18 0.25
49 7 0.10
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGAC
Found at i:97489042 original size:94 final size:94
Alignment explanation
Indices: 97488928--97489100 Score: 265
Period size: 94 Copynumber: 1.8 Consensus size: 94
97488918 GTAATGTGAG
* * *
97488928 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATAGAGACAAGGGCCAGTGTAAGACGTG
*
97488993 TCTGGGACATGCATCAGCTACATTACGAC
66 GCTGGGACATGCATCAGCTACATTACGAC
*** * *
97489022 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATAAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATAGAGACAAGGGCCAGTGTAAGACGTG
97489087 GCTGGGACATGCAT
66 GCTGGGACATGCAT
97489101 TGGCCTTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 70 1.00
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.21
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATAGAGACAAGGGCCAGTGTAAGACGTG
GCTGGGACATGCATCAGCTACATTACGAC
Found at i:97489078 original size:48 final size:46
Alignment explanation
Indices: 97488926--97489142 Score: 147
Period size: 47 Copynumber: 4.6 Consensus size: 46
97488916 GGGTAATGTG
** * **
97488926 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGACG
1 AGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCG-GCTAGAGATA
* * * * * *
97488974 AGGGCTAGTGTAAGACGTGTCTGGGACAT-GCATCAGCTACA-TTA
1 AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTAGAGATA
*
97489018 CGACAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATA
1 --AGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TAGAGATA
* * * *
97489068 AGTGCCAGTGTAAGACGTGGCTGGGACAT-GCATTGGCCTTA-ATGAT-
1 AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGG-C-TAGA-GATA
* *
97489114 GGTAGCCAGTGTAAGACGTGTCTGGGACA
1 AG-AGCCAGTGTAAGACATGTCTGGGACA
97489143 AGCATCAGCA
Statistics
Matches: 133, Mismatches: 27, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 25 0.19
47 68 0.51
48 33 0.25
49 3 0.02
50 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTAGAGATA
Found at i:97489092 original size:47 final size:47
Alignment explanation
Indices: 97488980--97489148 Score: 154
Period size: 47 Copynumber: 3.6 Consensus size: 47
97488970 GACGAGGGCT
* *
97488980 AGTGTAAGACGTGTCTGGGACATGCATCAG-C-TACAT--TACGACAGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCGGCCGTA-ATGATA-G-TAGCC
*
97489026 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CGTAGA-GATAAGT-GCC
1 AGTGTAAGA-CGTGTCTGGGACAT-GCATCGGCCGTA-ATGAT-AGTAGCC
* * * *
97489074 AGTGTAAGACGTGGCTGGGACATGCATTGGCCTTAATGATGGTAGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCGGCCGTAATGATAGTAGCC
*
97489121 AGTGTAAGACGTGTCTGGGACAAGCATC
1 AGTGTAAGACGTGTCTGGGACATGCATC
97489149 AGCACTTATA
Statistics
Matches: 102, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
46 18 0.18
47 59 0.58
48 19 0.19
49 3 0.03
50 2 0.02
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACGTGTCTGGGACATGCATCGGCCGTAATGATAGTAGCC
Found at i:97492492 original size:180 final size:179
Alignment explanation
Indices: 97492190--97492544 Score: 503
Period size: 180 Copynumber: 2.0 Consensus size: 179
97492180 TCTGTATCAT
* **
97492190 GAGATAAATATTTTTTAGTGAAGAAAGATCGGAACTATCAGATAGTGAAACAGGGGTATTTTTAA
1 GAGATAAATATTTTTTAGTGAAGAAAGATCGGAACTATCAGACAGTGAAACAGGGGTAACTTTAA
* * * *
97492255 TGAATAAATTGTACTAATTGGTTAAACCAAAAATTCTTAAAATTTTATGGTAAGAATATATGTAA
66 TGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATGTTATGGTAAGAATATATGTAA
* * * * ***
97492320 GTTTAATTTTTGGTAAAGTTAGCGGTTCTTAATTTGGAGTCTCGTACCAA
131 GTCT-ATTTTTGGGAAAATTAACAAATCTTAATTTGGAGTCTCGTACCAA
* * * * ** *
97492370 GAGATAAATTTTTTTTAGTGAAGAGAGGTCGGAACTGTTGGACAGTGAAATAGGGGTAACTTTAA
1 GAGATAAATATTTTTTAGTGAAGAAAGATCGGAACTATCAGACAGTGAAACAGGGGTAACTTTAA
97492435 TGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATGTTATGGTAAGAATATATGTAA
66 TGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATGTTATGGTAAGAATATATGTAA
*
97492500 GTCTATTTTTGGGAAAATTAACAAATCTTAATTTGGAGTTTCGTA
131 GTCTATTTTTGGGAAAATTAACAAATCTTAATTTGGAGTCTCGTA
97492545 GATCCAGCTA
Statistics
Matches: 153, Mismatches: 22, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
179 34 0.22
180 119 0.78
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (179 bp):
GAGATAAATATTTTTTAGTGAAGAAAGATCGGAACTATCAGACAGTGAAACAGGGGTAACTTTAA
TGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATGTTATGGTAAGAATATATGTAA
GTCTATTTTTGGGAAAATTAACAAATCTTAATTTGGAGTCTCGTACCAA
Found at i:97498397 original size:50 final size:50
Alignment explanation
Indices: 97498284--97498711 Score: 412
Period size: 50 Copynumber: 8.5 Consensus size: 50
97498274 GAGAACATAT
* * *
97498284 TGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGTCACGTG
*
97498336 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * * * * * *
97498386 TGTAATACTAAGTGCACGCTACTATGCGTACCTGATAGTTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCACGTG
* * * *
97498437 TGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * *
97498487 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * * * * *
97498537 TGTAGTACTAAGTGTAGGCTATTATGCGTACCA-ATTAACTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACGTG
* * * * *
97498588 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGCCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * * *
97498638 TGTAGTACTAAGTACAGGCTACTACGTCTACCAGATTGATAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * *
97498688 TGCAGTACAAAGTACAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
97498712 TGCATACCAG
Statistics
Matches: 307, Mismatches: 63, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
48 3 0.01
49 6 0.02
50 195 0.64
51 75 0.24
52 28 0.09
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
Found at i:97498448 original size:101 final size:99
Alignment explanation
Indices: 97498328--97498722 Score: 387
Period size: 101 Copynumber: 3.9 Consensus size: 99
97498318 ACAGTTTTAG
*
97498328 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAATA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
* * * *
97498393 CTAAGTGCACGCTACTATGCGTACCTGATAGTTTC
66 CTAAGTGCAGGCTACTACGCGTACCAGATAG-TTA
* * * * *
97498428 GATCACGTGTGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTGTGTAGT
1 G-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGT
* * * *
97498493 ACTAAGTGCAGGCTACTACGTGTACCGGATTGATA
65 ACTAAGTGCAGGCTACTACGCGTACCAGATAGTTA
* * * * * * * * * *
97498528 GGTCGCATGTGTAGTACTAAGTGTAGGCTATTATGCGTACCA-ATTAACTTCGATCACGTGTGTA
1 -GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACATGTGTA
* * * *
97498592 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAA
63 GTACTAAGTGCAGGCTACTACGCGTACCAGATAG-TTA
* * * * * *
97498630 GCCACGTGTGTAGTACTAAGTACAGGCTACTACGTCTACCAGATTGATAGGTCGCATGTGCAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
* * * *
97498695 CAAAGTACAGGCTACTATGCATACCAGA
66 CTAAGTGCAGGCTACTACGCGTACCAGA
97498723 GAGCTTCGGT
Statistics
Matches: 238, Mismatches: 51, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
99 2 0.01
100 70 0.29
101 162 0.68
102 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (99 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTACGCGTACCAGATAGTTA
Found at i:97498563 original size:151 final size:151
Alignment explanation
Indices: 97498284--97498720 Score: 606
Period size: 151 Copynumber: 2.9 Consensus size: 151
97498274 GAGAACATAT
* * * * *
97498284 TGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTACTAAGT
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TG-GTTAGGTCACGTGTGTAGTACTAAGT
* * * *
97498349 GCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAATACTAAGTGCACGCTACTATGCG
64 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
* **
97498414 TACCTGA-TAGTTTCGATCACGTG
129 TACC-AATTAACTTCGATCACGTG
*
97498437 TGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
* * *
97498502 AGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGTAGTACTAAGTGTAGGCTATTATGCGTA
66 AGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
97498567 CCAATTAACTTCGATCACGTG
131 CCAATTAACTTCGATCACGTG
* * * * *
97498588 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGCCACGTGTGTAGTACTAAGTAC
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
* * * * *
97498653 AGGCTACTACGTCTACCAGATTGATAGGTCGCATGTGCAGTACAAAGTACAGGCTACTATGCATA
66 AGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
97498718 CCA
131 CCA
97498721 GAGAGCTTCG
Statistics
Matches: 253, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
150 1 0.00
151 220 0.87
152 1 0.00
153 31 0.12
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
AGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
CCAATTAACTTCGATCACGTG
Found at i:97501097 original size:13 final size:13
Alignment explanation
Indices: 97501079--97501111 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
97501069 AAAGGCACAC
97501079 GCCCGTGCCTCTA
1 GCCCGTGCCTCTA
97501092 GCCCGTGCCTCTA
1 GCCCGTGCCTCTA
*
97501105 GGCCGTG
1 GCCCGTG
97501112 TCCCTCACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.42, G:0.30, T:0.21
Consensus pattern (13 bp):
GCCCGTGCCTCTA
Found at i:97506878 original size:43 final size:43
Alignment explanation
Indices: 97506830--97506927 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
97506820 CTTACATGTT
*
97506830 ATCACATATCGATGCCACTGTCCCACACAGGGTCTTACACGAA
1 ATCACATATCGATGCCAATGTCCCACACAGGGTCTTACACGAA
* * * * *
97506873 ATCACA-ATACAATGCCAATGTCCCAGACATGGTCTTACATGTA
1 ATCACATAT-CGATGCCAATGTCCCACACAGGGTCTTACACGAA
97506916 ATCACATATCGA
1 ATCACATATCGA
97506928 GTCGATGCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.04
43 42 0.91
44 2 0.04
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (43 bp):
ATCACATATCGATGCCAATGTCCCACACAGGGTCTTACACGAA
Found at i:97506999 original size:50 final size:48
Alignment explanation
Indices: 97506884--97507063 Score: 181
Period size: 50 Copynumber: 3.8 Consensus size: 48
97506874 TCACAATACA
* * * *
97506884 ATGCCAATGTCCCAGACATGGTCTTACA-TG-TAATCACATATCGAGTCG
1 ATGCC-ATGTCCCAGACATGGTTTTACACTGCTCA-CACATATCAAGCCG
* * * * **
97506932 ATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCCTCTTTTCGTGCCG
1 ATGCCATGTCCCAGACATGGTTTTACACT-GCTC-ACACATATCAAGCCG
*
97506982 ATGCCATGTCCCAGACATGGTCTTACACTG---ACACATATCAAGCCG
1 ATGCCATGTCCCAGACATGGTTTTACACTGCTCACACATATCAAGCCG
97507027 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCACA
1 ATGCCATGTCCCAGACATGGTTTTACACT-GCTCACA
97507064 TGTATTGCCA
Statistics
Matches: 108, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
45 37 0.34
46 1 0.01
47 21 0.19
48 6 0.06
49 5 0.05
50 38 0.35
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTTTTACACTGCTCACACATATCAAGCCG
Found at i:97507042 original size:45 final size:46
Alignment explanation
Indices: 97506884--97507055 Score: 186
Period size: 45 Copynumber: 3.6 Consensus size: 46
97506874 TCACAATACA
*
97506884 ATGCCAATGTCCCAGACATGGTCTTACA-TGTAATCACATATCGAGTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACTGT-A-CACATATCGAGCCG
* * * * * *
97506932 ATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCCTCTTTTCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G---TACACATATCGAGCCG
*
97506982 ATGCCATGTCCCAGACATGGTCTTACACTG-ACACATATCAAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGTACACATATCGAGCCG
*
97507027 ATGCCATGTCCCAGACATGGTTTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
97507056 AGCTCACATG
Statistics
Matches: 104, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
45 37 0.36
47 21 0.20
48 6 0.06
49 2 0.02
50 37 0.36
52 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGTACACATATCGAGCCG
Found at i:97507055 original size:95 final size:97
Alignment explanation
Indices: 97506884--97507060 Score: 288
Period size: 95 Copynumber: 1.8 Consensus size: 97
97506874 TCACAATACA
* *
97506884 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCGAGTCGATGCCATGTCCCAGACA
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCAAGCCGATGCCATGTCCCAGACA
*
97506949 TGGTTTTACACTGGCTCTCCTCTTTTCGTGCCG
65 TGGTTTTACACTAGCTCTCCTCTTTTCGTGCCG
97506982 ATGCC-ATGTCCCAGACATGGTCTTACACTG-A-CACATATCAAGCCGATGCCATGTCCCAGACA
1 ATGCCAATGTCCCAGACATGGTCTTACA-TGAATCACATATCAAGCCGATGCCATGTCCCAGACA
97507044 TGGTTTTACACTAGCTC
65 TGGTTTTACACTAGCTC
97507061 ACATGTATTG
Statistics
Matches: 75, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
95 45 0.60
96 1 0.01
97 22 0.29
98 7 0.09
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCAAGCCGATGCCATGTCCCAGACAT
GGTTTTACACTAGCTCTCCTCTTTTCGTGCCG
Found at i:97515624 original size:82 final size:79
Alignment explanation
Indices: 97515463--97515626 Score: 274
Period size: 82 Copynumber: 2.0 Consensus size: 79
97515453 ATCATCATAA
* *
97515463 CAATTCCTCACCACATATTATAGTTATCAAGATTTGGCATATTAGTACATTTGGAGAACCATACC
1 CAATTCCTCACCACATATTATAGTTATCAAGATTTGGCATATTAGTACATTTGAAGAACCATACA
97515528 ATCAAGACATTTTC
66 ATCAAGACATTTTC
*
97515542 CAATTCCTCACCACATATTATAGTTGATTAAGATTTGGCATATTAGTACATTTATGAAGAACCAT
1 CAATTCCTCACCACATATTATAGTT-ATCAAGATTTGGCATATTAGTACA-TT-TGAAGAACCAT
97515607 ACAATCAAGACATTTTC
63 ACAATCAAGACATTTTC
97515624 CAA
1 CAA
97515627 ACCAAAGTAA
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
79 25 0.32
80 23 0.29
81 2 0.03
82 29 0.37
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (79 bp):
CAATTCCTCACCACATATTATAGTTATCAAGATTTGGCATATTAGTACATTTGAAGAACCATACA
ATCAAGACATTTTC
Found at i:97516774 original size:112 final size:111
Alignment explanation
Indices: 97516520--97516832 Score: 380
Period size: 112 Copynumber: 2.8 Consensus size: 111
97516510 CAAAAATTTT
* * * *
97516520 AAAAAATTTGTTATTT-TTTCTTGAATGGTAGAATATCTATCTAAATTTTTAAGAAATTCATTTA
1 AAAAAATGTGTTATTTGTTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAATTCATTT-
* * *** *
97516584 AAAATTCAATAAAGTCATAAAAAATATAAAAACTCCAAATGTTTAAAAC
65 AAAATTCAAAAAACT-AT-AAAAATATAAAAACTCCAAAAACTCAAAAC
* *
97516633 AAAAAACGTGTTATTTGTTTCTTGAATGGTAAAATGTCTATATAAAATTTTAAGAAACTT-ATTT
1 AAAAAATGTGTTATTTGTTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAA-TTCATTT
* * *
97516697 AAAATTCAACAAAACTATAAATATATAAAAAGTTTCAAAAACTCAAAA-
65 AAAATTCAA-AAAACTATAAAAATATAAAAA-CTCCAAAAACTCAAAAC
*
97516745 AAAAAATGTGTTATTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAATTCATTTA
1 AAAAAATGTGTTATTTGTTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAATTCATTTA
*
97516810 AAAGTTCAATAAAATTATAAAAA
66 AAA-TTCAA-AAAACTATAAAAA
97516833 GTTTCAAATG
Statistics
Matches: 173, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
111 2 0.01
112 74 0.43
113 51 0.29
114 44 0.25
115 2 0.01
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (111 bp):
AAAAAATGTGTTATTTGTTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAATTCATTTA
AAATTCAAAAAACTATAAAAATATAAAAACTCCAAAAACTCAAAAC
Found at i:97516886 original size:98 final size:105
Alignment explanation
Indices: 97516632--97516887 Score: 287
Period size: 112 Copynumber: 2.4 Consensus size: 105
97516622 ATGTTTAAAA
* * * *
97516632 CAAAAAACGTGTTATTTGTTTCTTGAATGGTAAAATGTCTATATAAAATTTTAAGAAACTTATTT
1 CAAAAAAAGTGTTAGTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAACTTATTT
97516697 AAAATTCAACAAAACTATAAATATATAAAAAGTTTCAAAAACT
66 AAAATT--AC-AAACTATAAATATATAAAAAGTTTCAAAAACT
*
97516740 CAAAAAAAAAATGTGTTATTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAA-TT
1 C---AAAAAAA-GTGTTAGTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAACTT
***
97516804 CATTTAAAAGTT-C-AA-TA-AAAT-TATAAAAAGTTTCAAATGTT
62 -ATTTAAAA-TTACAAACTATAAATATATAAAAAGTTTCAAAAACT
*
97516845 C-AAAAAA-TGTT-GTTGCTTCTTGAATGATAAAATGTCTATCTAA
1 CAAAAAAAGTGTTAGTTGCTTCTTGAATGGTAAAATGTCTATCTAA
97516888 GAAGGAATAA
Statistics
Matches: 134, Mismatches: 8, Indels: 22
0.82 0.05 0.13
Matches are distributed among these distances:
98 30 0.22
99 4 0.03
101 6 0.04
105 18 0.13
106 4 0.03
107 2 0.01
108 3 0.02
110 1 0.01
111 8 0.06
112 56 0.42
113 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (105 bp):
CAAAAAAAGTGTTAGTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAACTTATTT
AAAATTACAAACTATAAATATATAAAAAGTTTCAAAAACT
Found at i:97516992 original size:14 final size:14
Alignment explanation
Indices: 97516975--97517004 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
97516965 ATTATTTAAA
*
97516975 TTTTTTTATAGTTT
1 TTTTTTTATAATTT
97516989 TTTTTTTATAATTT
1 TTTTTTTATAATTT
97517003 TT
1 TT
97517005 AATGGTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (14 bp):
TTTTTTTATAATTT
Found at i:97522929 original size:21 final size:19
Alignment explanation
Indices: 97522903--97522942 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
97522893 TTATTATTTT
97522903 CAATTAAATTATATATTATAA
1 CAATT-AATT-TATATTATAA
*
97522924 CAATTAATTTTTATTATAA
1 CAATTAATTTATATTATAA
97522943 TTATTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 4 0.22
21 5 0.28
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
CAATTAATTTATATTATAA
Found at i:97523588 original size:17 final size:17
Alignment explanation
Indices: 97523549--97523588 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
97523539 AAGAAAATAT
*
97523549 TTTATGTTAAAAGTTAA
1 TTTATTTTAAAAGTTAA
*
97523566 -TTATTTTAAAATTTAA
1 TTTATTTTAAAAGTTAA
97523582 TTTATTT
1 TTTATTT
97523589 ATCATTAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTATTTTAAAAGTTAA
Found at i:97523748 original size:17 final size:17
Alignment explanation
Indices: 97523726--97523764 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
97523716 ATCATCAAAA
97523726 TAATAATAATAA-ATATT
1 TAATAA-AATAATATATT
97523743 TAATAAAATAATATATT
1 TAATAAAATAATATATT
*
97523760 AAATA
1 TAATA
97523765 TTTTTTAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAAAATAATATATT
Found at i:97547191 original size:21 final size:22
Alignment explanation
Indices: 97547151--97547195 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
97547141 TCGAAAACTG
97547151 GTAAAAGGTATCAATACTTTTT
1 GTAAAAGGTATCAATACTTTTT
* *
97547173 GTAAAA-GTATCGATGCTTTTT
1 GTAAAAGGTATCAATACTTTTT
97547194 GT
1 GT
97547196 GTAATCTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (22 bp):
GTAAAAGGTATCAATACTTTTT
Found at i:97549110 original size:40 final size:39
Alignment explanation
Indices: 97549066--97549157 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 39
97549056 GACTCGCTCA
*
97549066 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
97549105 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
*
97549145 AAAGCCTTCGGGA
1 AATGCCTTCGGGA
97549158 TTAGCCCGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 12 0.26
40 28 0.61
41 6 0.13
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:97549191 original size:39 final size:40
Alignment explanation
Indices: 97549101--97549194 Score: 120
Period size: 39 Copynumber: 2.4 Consensus size: 40
97549091 ATAGCGACTT
** *
97549101 GCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTT
1 GCACGAATGCCTTCGGGACTTAACCCGAATTTAGTAACTC
* * *
97549141 GCAC-AAAGCCTTCGGGA-TTAGCCCGAATTTATTAACTC
1 GCACGAATGCCTTCGGGACTTAACCCGAATTTAGTAACTC
97549179 GCACGAATGCCTTCGG
1 GCACGAATGCCTTCGG
97549195 ATCCTAGTCC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 20 0.43
39 22 0.48
40 4 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGAATTTAGTAACTC
Found at i:97557157 original size:40 final size:39
Alignment explanation
Indices: 97557113--97557241 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
97557103 GACTCGCTCA
*
97557113 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
97557152 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
97557192 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
97557230 GAATGCCTTCGG
1 -AATGCCTTCGG
97557242 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:97557241 original size:78 final size:80
Alignment explanation
Indices: 97557148--97557294 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
97557138 ATAGCGACTT
* * *
97557148 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
97557210 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
97557226 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
97557291 CGGA
66 CGGA
97557295 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:97557278 original size:40 final size:37
Alignment explanation
Indices: 97557129--97557294 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
97557119 TTCGGGACGA
* ** *
97557129 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
97557169 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
97557207 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
97557247 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
97557287 AGCCCGGA
1 AGCCCGGA
97557295 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:97561045 original size:45 final size:45
Alignment explanation
Indices: 97560981--97561188 Score: 224
Period size: 45 Copynumber: 4.6 Consensus size: 45
97560971 GCAGATAAAC
*
97560981 TGCTAGTACGGTGTGGATAAACCACTCATTGGTGTAGATAAAAAT
1 TGCTAATACGGTGTGGATAAACCACTCATTGGTGTAGATAAAAAT
* * * * **
97561026 TGCTAGTACAGTGTTGATAAACCACTCATTGATGTAGATAAATGCT
1 TGCTAATACGGTGTGGATAAACCACTCATTGGTGTAGATAAA-AAT
* * * **
97561072 T-TTAATACGGTGTGGATAAACCACTCATTGGTGCATATAAAAGC
1 TGCTAATACGGTGTGGATAAACCACTCATTGGTGTAGATAAAAAT
**
97561116 TGCTAATACGGTGTGGATAAACCACTCATTGGTGTTA-ATAAAAGC
1 TGCTAATACGGTGTGGATAAACCACTCATTGGTG-TAGATAAAAAT
* * *
97561161 TAC-AATACAGTATGGATAAACCACTCAT
1 TGCTAATACGGTGTGGATAAACCACTCAT
97561189 CCATATAGAT
Statistics
Matches: 140, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
44 24 0.17
45 113 0.81
46 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (45 bp):
TGCTAATACGGTGTGGATAAACCACTCATTGGTGTAGATAAAAAT
Found at i:97561088 original size:90 final size:89
Alignment explanation
Indices: 97560987--97561188 Score: 262
Period size: 90 Copynumber: 2.3 Consensus size: 89
97560977 AAACTGCTAG
* * * *
97560987 TACGGTGTGGATAAACCACTCATTGGTGTAGATAAAAATTGCTAGTACAGTGTTGATAAACCACT
1 TACGGTGTGGATAAACCACTCATTGGTGCAGATAAAAACTGCTAATACAGTGTGGATAAACCACT
* **
97561052 CATTGATG-TAGATAAATGCTTTTAA
66 CATTGATGTTA-ATAAAAGC-TACAA
* * *
97561077 TACGGTGTGGATAAACCACTCATTGGTGCATATAAAAGCTGCTAATACGGTGTGGATAAACCACT
1 TACGGTGTGGATAAACCACTCATTGGTGCAGATAAAAACTGCTAATACAGTGTGGATAAACCACT
*
97561142 CATTGGTGTTAATAAAAGCTACAA
66 CATTGATGTTAATAAAAGCTACAA
* *
97561166 TACAGTATGGATAAACCACTCAT
1 TACGGTGTGGATAAACCACTCAT
97561189 CCATATAGAT
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
89 24 0.24
90 72 0.73
91 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (89 bp):
TACGGTGTGGATAAACCACTCATTGGTGCAGATAAAAACTGCTAATACAGTGTGGATAAACCACT
CATTGATGTTAATAAAAGCTACAA
Found at i:97561338 original size:34 final size:34
Alignment explanation
Indices: 97561288--97561377 Score: 117
Period size: 34 Copynumber: 2.6 Consensus size: 34
97561278 CCCATACAAT
* *
97561288 GCAATATGACATGCTTATAGCAGATCAATACGGTA
1 GCAATA-GACATGCTTATAACAGATCAATACAGTA
* *
97561323 GTAATAGACATGCTTATAACATATCAATACAGTA
1 GCAATAGACATGCTTATAACAGATCAATACAGTA
* *
97561357 GCAATAAACATGCTTACAACA
1 GCAATAGACATGCTTATAACA
97561378 AGTTAGTACG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 43 0.90
35 5 0.10
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (34 bp):
GCAATAGACATGCTTATAACAGATCAATACAGTA
Found at i:97561654 original size:14 final size:14
Alignment explanation
Indices: 97561635--97561661 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97561625 TAGAACAATT
97561635 CTCAAAATTATGGA
1 CTCAAAATTATGGA
97561649 CTCAAAATTATGG
1 CTCAAAATTATGG
97561662 GAAAAACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (14 bp):
CTCAAAATTATGGA
Found at i:97564329 original size:16 final size:16
Alignment explanation
Indices: 97564308--97564339 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
97564298 TCGAGTTGAG
*
97564308 AAAATTATTTAATTTA
1 AAAATTAATTAATTTA
97564324 AAAATTAATTAATTTA
1 AAAATTAATTAATTTA
97564340 TGATGTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AAAATTAATTAATTTA
Found at i:97567743 original size:5 final size:5
Alignment explanation
Indices: 97567733--97567758 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
97567723 GATACCAACC
97567733 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
97567759 GTTTTGGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:97569817 original size:43 final size:43
Alignment explanation
Indices: 97569756--97569918 Score: 245
Period size: 43 Copynumber: 3.8 Consensus size: 43
97569746 CTAAAGGCCA
* **
97569756 TTCCCACAAACGCAGCTAAAGGTCATGGCCTTTAGCGGCGCTT
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGCTT
* *
97569799 TTCCCACAAACGTCGCTAAAAATCATGGCCTTTAGCGGCGTTT
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGCTT
*
97569842 TTCCCATAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGCTT
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGCTT
* * *
97569885 TTCCCACAAACGCCGTTAAAGATCATAGCCTTTA
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTA
97569919 AAAAATATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGCTT
Found at i:97570229 original size:31 final size:31
Alignment explanation
Indices: 97570153--97570226 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 31
97570143 TCAAGTTATC
97570153 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATTTAGAA
97570185 TTAAA-ACTAAAATAAATAATAAAAA-TTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATTTAGAA
97570215 TTAAATATAAAA
1 TTAAATATAAAA
97570227 ATATCAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 11 0.28
31 15 0.38
32 13 0.33
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATTTAGAA
Found at i:97575814 original size:7 final size:7
Alignment explanation
Indices: 97575802--97575833 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
97575792 ATTTATCTCT
97575802 AAACCCC
1 AAACCCC
97575809 AAACCCC
1 AAACCCC
97575816 AAACCCC
1 AAACCCC
*
97575823 AAACCCT
1 AAACCCC
97575830 AAAC
1 AAAC
97575834 TCTAGGCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.47, C:0.50, G:0.00, T:0.03
Consensus pattern (7 bp):
AAACCCC
Found at i:97575852 original size:7 final size:7
Alignment explanation
Indices: 97575800--97575868 Score: 50
Period size: 7 Copynumber: 9.9 Consensus size: 7
97575790 ATATTTATCT
97575800 CTAAACC
1 CTAAACC
*
97575807 CCAAACC
1 CTAAACC
*
97575814 CCAAACC
1 CTAAACC
*
97575821 CCAAACC
1 CTAAACC
*
97575828 CTAAACT
1 CTAAACC
**
97575835 CTAGGCC
1 CTAAACC
*
97575842 CTAAACT
1 CTAAACC
97575849 CTAAACC
1 CTAAACC
*
97575856 AT-AACC
1 CTAAACC
97575862 CATAAAC
1 C-TAAAC
97575869 TAAATTACTT
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
6 4 0.08
7 41 0.85
8 3 0.06
ACGTcount: A:0.42, C:0.42, G:0.03, T:0.13
Consensus pattern (7 bp):
CTAAACC
Found at i:97575930 original size:41 final size:41
Alignment explanation
Indices: 97575885--97576072 Score: 277
Period size: 41 Copynumber: 4.6 Consensus size: 41
97575875 ACTTTTTTGC
* * *
97575885 GGCGTTTTTCAAAAAGCGCAGCTAAAACCTCGATTTATAGT
1 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
* *
97575926 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTTGATCTATAGC
1 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
* * * *
97575967 GGCGTTTTTCGAAAAGCGCCACTAAAACCTCAATCTATAGA
1 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
*
97576008 AGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
1 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
*
97576049 GGCATTTTTCCAAAAGCGCCGCTA
1 GGCGTTTTTCCAAAAGCGCCGCTA
97576073 TTGTTCAGTT
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 130 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (41 bp):
GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
Done.