Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 315 of 438
Found at i:98549933 original size:23 final size:23
Alignment explanation
Indices: 98549897--98549967 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 23
98549887 GGACTCACCA
*
98549897 CAACTCGTATGAGCTTACTGATT
1 CAACTCGTAAGAGCTTACTGATT
* *
98549920 CAACTTGTAAGAGCTTACTGTTT
1 CAACTCGTAAGAGCTTACTGATT
* * ** *
98549943 CAGCTCATTGGAGCTTACCGATT
1 CAACTCGTAAGAGCTTACTGATT
98549966 CA
1 CA
98549968 GCTTGAAAGA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (23 bp):
CAACTCGTAAGAGCTTACTGATT
Found at i:98549979 original size:23 final size:23
Alignment explanation
Indices: 98549907--98550005 Score: 69
Period size: 23 Copynumber: 4.3 Consensus size: 23
98549897 CAACTCGTAT
* *
98549907 GAGCTTACTGATTCAACTTGTAA
1 GAGCTTACTGATTCAGCTTGAAA
* * **
98549930 GAGCTTACTGTTTCAGC-TCATTG
1 GAGCTTACTGATTCAGCTTGA-AA
*
98549953 GAGCTTACCGATTCAGCTTGAAA
1 GAGCTTACTGATTCAGCTTGAAA
* * *
98549976 GAGCGTATTG-TTCAGC-TCAATA
1 GAGCTTACTGATTCAGCTTGAA-A
98549998 GAGCTTAC
1 GAGCTTAC
98550006 CATTTTCAGC
Statistics
Matches: 56, Mismatches: 17, Indels: 7
0.70 0.21 0.09
Matches are distributed among these distances:
21 3 0.05
22 14 0.25
23 37 0.66
24 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTTGAAA
Found at i:98550000 original size:22 final size:20
Alignment explanation
Indices: 98549975--98550029 Score: 56
Period size: 24 Copynumber: 2.5 Consensus size: 20
98549965 TCAGCTTGAA
98549975 AGAGCGTATTGTTCAGCTCAAT
1 AGAGC-TATT-TTCAGCTCAAT
98549997 AGAGCTTACCATTTTCAGCTCAAT
1 AGAGC-T---ATTTTCAGCTCAAT
98550021 AGAGCTATT
1 AGAGCTATT
98550030 ATTTATCAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
20 3 0.10
22 6 0.21
23 1 0.03
24 16 0.55
25 3 0.10
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (20 bp):
AGAGCTATTTTCAGCTCAAT
Found at i:98550016 original size:46 final size:46
Alignment explanation
Indices: 98549907--98550006 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 46
98549897 CAACTCGTAT
* * * * * *
98549907 GAGCTTACTGATTCAACTTGTAAGAGCTTACTGTTTCAGCTCATTG
1 GAGCTTACCGATTCAGCTTGAAAGAGCGTACTGTTTCAGCTCAATA
*
98549953 GAGCTTACCGATTCAGCTTGAAAGAGCGTATTG-TTCAGCTCAATA
1 GAGCTTACCGATTCAGCTTGAAAGAGCGTACTGTTTCAGCTCAATA
98549998 GAGCTTACC
1 GAGCTTACC
98550007 ATTTTCAGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 19 0.40
46 28 0.60
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (46 bp):
GAGCTTACCGATTCAGCTTGAAAGAGCGTACTGTTTCAGCTCAATA
Found at i:98562383 original size:29 final size:28
Alignment explanation
Indices: 98562341--98562425 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 28
98562331 ACATGGCTTG
* *
98562341 GAAT-TGATTCGGGCCGGATGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
98562369 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
* *
98562398 GAATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
98562426 ACATGTATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 23 0.45
29 28 0.55
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (28 bp):
GAATGTGATTTGGGCCAATGGGCCATAT
Found at i:98562419 original size:28 final size:29
Alignment explanation
Indices: 98562358--98562425 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 29
98562348 TTCGGGCCGG
*
98562358 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
98562387 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
98562415 GTGGGCCATAT
1 ATGGGCCATAT
98562426 ACATGTATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:98563119 original size:11 final size:11
Alignment explanation
Indices: 98563103--98563128 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
98563093 ATTGCATGTA
98563103 TGATATTATTG
1 TGATATTATTG
98563114 TGATATTATTG
1 TGATATTATTG
98563125 TGAT
1 TGAT
98563129 GTGGGCTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:98564025 original size:22 final size:21
Alignment explanation
Indices: 98564000--98564041 Score: 50
Period size: 22 Copynumber: 1.9 Consensus size: 21
98563990 GTATTATGTA
98564000 ATTA-AGTTTAGGTTGATTGATT
1 ATTAGAGTTT-GG-TGATTGATT
98564022 ATTATGAGTTTGGTGATTGA
1 ATTA-GAGTTTGGTGATTGA
98564042 CATTTTGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
22 11 0.61
23 2 0.11
24 5 0.28
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (21 bp):
ATTAGAGTTTGGTGATTGATT
Found at i:98565135 original size:597 final size:596
Alignment explanation
Indices: 98564003--98565173 Score: 2171
Period size: 597 Copynumber: 2.0 Consensus size: 596
98563993 TTATGTAATT
*
98564003 AAGTTTAGGTTGATTGATTATTATGAGTTTGGTGATTGACATTTTGAGAACAACAAAAAGAAACG
1 AAGTTTAGGTTGATGGATTATTATGAGTTTGGTGATTGACATTTTGAGAACAACAAAAAGAAACG
*
98564068 TAAGAACAACAAATGTAAGAAGGAAGGAAATTTCATTAAAGCAAGAAAGTAGGTACAAATGCAAG
66 TAAGAACAACAAATGTAAGAAGGAAGGAAATTTCATTAAAGCAAGAAAGTAGGTACAAATACAAG
98564133 AAAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCCCCTCTGCATCTGCCTCTCCCTCATT
131 AAAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCCCCTCTGCATCTGCCTCTCCCTCATT
98564198 GCTAACTTCCTCAATAGGAGCGGGATGGCTGGCTCTGGTTTTAGGGAGAAGAAGAGATTGTTAGA
196 GCTAACTTCCTCAATAGGAGCGGGATGGCTGGCTCTGGTTTTAGGGAGAAGAAGAGATTGTTAGA
*
98564263 TTCTTGTTATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAAAGTTGGTGAGCTTGCGCATA
261 TTCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAAAGTTGGTGAGCTTGCGCATA
*
98564328 CAGCTAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATTT
326 CAGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATTT
*
98564393 GATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATTCAAGTC
391 GATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGTC
* * *
98564458 TTCGTAGTTTTCCTTCTGCATCCTCTTTGAATCAGCCAACCGTCATTCCTACAAGTATTTGATAG
456 TTCGTAGTTTTCCTTCTGCATCCTCTTTAAATCAGCCAACCATCATTCCTACAAGGATTTGATAG
*
98564523 ATTAATAAGTGGCTTCCCCTTATTTTTAGGTTTGTCTTACTCTTTTTAACAATGGCTTCCCCTTA
521 ATTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATGGCTTCCCCTTA
98564588 TTTCAAATTTC
586 TTTCAAATTTC
* *
98564599 AAGTTTAGGTTGATGGGTTATTATGAGTTTGGTGATTGGCATTTTGAGAACAACAAAAAGAAACG
1 AAGTTTAGGTTGATGGATTATTATGAGTTTGGTGATTGACATTTTGAGAACAACAAAAAGAAACG
*
98564664 TAAGAACAACAAATGTAAGAAGGAAGGAAATTTCATTAAAGCAGGAAAGTAGGTACAAATACAAG
66 TAAGAACAACAAATGTAAGAAGGAAGGAAATTTCATTAAAGCAAGAAAGTAGGTACAAATACAAG
*
98564729 AAAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCTCCTCTGCATCTGCCTCTCCCTCATT
131 AAAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCCCCTCTGCATCTGCCTCTCCCTCATT
*
98564794 GCTAACTTCCTCAATAGGAGCGGGGATGGCTGGCTCTGGTTTTAGGGAGAAGAAGAGGTTGTTAG
196 GCTAACTTCCTCAATAGGAGC-GGGATGGCTGGCTCTGGTTTTAGGGAGAAGAAGAGATTGTTAG
*
98564859 ATTCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAACGTTGGTGAGCTTGCGCAT
260 ATTCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAAAGTTGGTGAGCTTGCGCAT
98564924 ACAGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATT
325 ACAGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATT
98564989 TGATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGT
390 TGATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGT
* * *
98565054 CTTCGTATTTTTCCTTTTGCATCCTCTTTAAATCAGCCAACCATCATTCCTCCAAGGATTTGATA
455 CTTCGTAGTTTTCCTTCTGCATCCTCTTTAAATCAGCCAACCATCATTCCTACAAGGATTTGATA
98565119 GATTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATG
520 GATTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATG
98565174 ATTAATTTCA
Statistics
Matches: 556, Mismatches: 18, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
596 210 0.38
597 346 0.62
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (596 bp):
AAGTTTAGGTTGATGGATTATTATGAGTTTGGTGATTGACATTTTGAGAACAACAAAAAGAAACG
TAAGAACAACAAATGTAAGAAGGAAGGAAATTTCATTAAAGCAAGAAAGTAGGTACAAATACAAG
AAAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCCCCTCTGCATCTGCCTCTCCCTCATT
GCTAACTTCCTCAATAGGAGCGGGATGGCTGGCTCTGGTTTTAGGGAGAAGAAGAGATTGTTAGA
TTCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAAAGTTGGTGAGCTTGCGCATA
CAGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATTT
GATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGTC
TTCGTAGTTTTCCTTCTGCATCCTCTTTAAATCAGCCAACCATCATTCCTACAAGGATTTGATAG
ATTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATGGCTTCCCCTTA
TTTCAAATTTC
Found at i:98569522 original size:25 final size:25
Alignment explanation
Indices: 98569480--98569527 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
98569470 ACTTTCTGCC
**
98569480 AATTTTTTTTATTTTTCT-TTAATT
1 AATTTTTTTTATAATTCTATTAATT
98569504 AATTTATTTTTATAATTCTATTAA
1 AATTT-TTTTTATAATTCTATTAA
98569528 AATTATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 11 0.55
26 4 0.20
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (25 bp):
AATTTTTTTTATAATTCTATTAATT
Found at i:98572578 original size:21 final size:21
Alignment explanation
Indices: 98572487--98572579 Score: 69
Period size: 21 Copynumber: 4.4 Consensus size: 21
98572477 AACATGGCCA
* * *
98572487 TGTGAAAGAGGCACACGCTTG
1 TGTGAAAGAAGCGCACGCCTG
* * **
98572508 TCTGAAAGAAGCGCACACCAA
1 TGTGAAAGAAGCGCACGCCTG
* * *
98572529 TGTGCAAGAAGCGTATGCCTG
1 TGTGAAAGAAGCGCACGCCTG
* * *
98572550 CGTAAAAGAAGCGCACGCCCG
1 TGTGAAAGAAGCGCACGCCTG
98572571 TGTGAAAGA
1 TGTGAAAGA
98572580 GGCACACGGC
Statistics
Matches: 50, Mismatches: 22, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.33, C:0.23, G:0.29, T:0.15
Consensus pattern (21 bp):
TGTGAAAGAAGCGCACGCCTG
Found at i:98572587 original size:21 final size:22
Alignment explanation
Indices: 98572566--98572627 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
98572556 AGAAGCGCAC
* *
98572566 GCCCGTGTGAAAGAGGCACACG
1 GCCCGTATGAAAGAGGCACACA
* * *
98572588 GCCC-TATGAACGAGGTATACA
1 GCCCGTATGAAAGAGGCACACA
98572609 G-CCGTATGAAAGAGGCACA
1 GCCCGTATGAAAGAGGCACA
98572628 TAACTATGGA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 25 0.81
22 4 0.13
ACGTcount: A:0.32, C:0.24, G:0.31, T:0.13
Consensus pattern (22 bp):
GCCCGTATGAAAGAGGCACACA
Found at i:98575131 original size:40 final size:40
Alignment explanation
Indices: 98575074--98575221 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
98575064 TGAATGATAC
* * *
98575074 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATCATAT
* * * *
98575114 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATCATAT
* * *
98575154 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATCATAT
* *
98575194 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
98575222 TTGTGGATTA
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 88 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATCATAT
Found at i:98575241 original size:80 final size:80
Alignment explanation
Indices: 98575074--98575242 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
98575064 TGAATGATAC
* * * * *
98575074 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATATCTGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
98575139 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * *
98575154 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
98575218 GTGCTTGTGGATTATAT
65 GTGCGAGTGG-TTATAT
98575235 CC-GGCTAA
1 CCGGGCTAA
98575243 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 65 0.86
81 11 0.14
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:98578570 original size:38 final size:38
Alignment explanation
Indices: 98578488--98578579 Score: 107
Period size: 38 Copynumber: 2.4 Consensus size: 38
98578478 TAATTAACTG
* *
98578488 AATATAATAATTATAATAATATTTGAACAAAAACTTAC
1 AATACAATAATTATAATAATATTTCAACAAAAACTTAC
* *
98578526 AATACAATAATTATAATAATA-TTCAATCATAAA-TTAT
1 AATACAATAATTATAATAATATTTCAA-CAAAAACTTAC
*
98578563 AGTTACAATAATTATAA
1 A-ATACAATAATTATAA
98578580 CAAGGATTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
37 8 0.17
38 39 0.83
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (38 bp):
AATACAATAATTATAATAATATTTCAACAAAAACTTAC
Found at i:98583172 original size:66 final size:66
Alignment explanation
Indices: 98583066--98583195 Score: 242
Period size: 66 Copynumber: 2.0 Consensus size: 66
98583056 CTGAAAGCGG
*
98583066 ACAAATTGGGCCTAATTTAGTGTTTTACACAGCTTAAGCACTTCCACATGGGTAAATCACACACG
1 ACAAATTGGGCCTAATTTAGTGTTTTACACAGCTTAAGCACTTCCACATGGGTAAACCACACACG
98583131 A
66 A
*
98583132 ACAAATTGGGCCTAATTTAGTGTTTTACACGGCTTAAGCACTTCCACATGGGTAAACCACACAC
1 ACAAATTGGGCCTAATTTAGTGTTTTACACAGCTTAAGCACTTCCACATGGGTAAACCACACAC
98583196 CCGTGTGTGA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (66 bp):
ACAAATTGGGCCTAATTTAGTGTTTTACACAGCTTAAGCACTTCCACATGGGTAAACCACACACG
A
Found at i:98584982 original size:13 final size:13
Alignment explanation
Indices: 98584960--98584992 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
98584950 AATGACTGAA
98584960 AAAT-TTTTACTT
1 AAATATTTTACTT
98584972 AAATATTTTACTT
1 AAATATTTTACTT
98584985 AAATATTT
1 AAATATTT
98584993 CTCTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (13 bp):
AAATATTTTACTT
Found at i:98586907 original size:119 final size:119
Alignment explanation
Indices: 98586696--98586918 Score: 410
Period size: 119 Copynumber: 1.9 Consensus size: 119
98586686 TCCACATTCT
* *
98586696 AGTCCATGTGACAAAAACAGAATGAGTCATGAGGAACGAAGACTACAAATTGATGAACTAGATGA
1 AGTCCATGTGAAAAAAACAAAATGAGTCATGAGGAACGAAGACTACAAATTGATGAACTAGATGA
*
98586761 ATGGCAGACACATGTCAAGGAGCAACCAAAAGTACACGAACGTGATGGATCCAC
66 ATGGCAGACACATGTCAAGAAGCAACCAAAAGTACACGAACGTGATGGATCCAC
*
98586815 AGTCCATGTGAAAAAAACAAAATGAGTCATGAGGAACGAAGACTACACATTGATGAACTAGATGA
1 AGTCCATGTGAAAAAAACAAAATGAGTCATGAGGAACGAAGACTACAAATTGATGAACTAGATGA
98586880 ATGGCAGACACATGTCAAGAAGCAACCAAAAGTACACGA
66 ATGGCAGACACATGTCAAGAAGCAACCAAAAGTACACGA
98586919 TGAATCAAAG
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 100 1.00
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (119 bp):
AGTCCATGTGAAAAAAACAAAATGAGTCATGAGGAACGAAGACTACAAATTGATGAACTAGATGA
ATGGCAGACACATGTCAAGAAGCAACCAAAAGTACACGAACGTGATGGATCCAC
Found at i:98599310 original size:21 final size:21
Alignment explanation
Indices: 98599286--98599327 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
98599276 AATTCAAAAC
*
98599286 ATATCTTTCATATTTCATCAA
1 ATATATTTCATATTTCATCAA
98599307 ATATATTTCATATTTCATCAA
1 ATATATTTCATATTTCATCAA
98599328 CTAAATCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.48
Consensus pattern (21 bp):
ATATATTTCATATTTCATCAA
Found at i:98603081 original size:46 final size:46
Alignment explanation
Indices: 98603031--98603203 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
98603021 TGGTTGAGCA
98603031 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98603077 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
98603122 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
98603170 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
98603204 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:98603187 original size:93 final size:93
Alignment explanation
Indices: 98603028--98603198 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
98603018 GGATGGTTGA
* *
98603028 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98603093 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
98603121 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98603186 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
98603199 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:98610710 original size:47 final size:46
Alignment explanation
Indices: 98610593--98610765 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
98610583 GGATGGTTGA
98610593 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
98610640 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
98610683 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
98610733 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
98610766 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:98610762 original size:93 final size:92
Alignment explanation
Indices: 98610593--98610762 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
98610583 GGATGGTTGA
* *
98610593 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
98610658 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
98610685 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
98610750 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
98610763 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:98616711 original size:46 final size:46
Alignment explanation
Indices: 98616651--98616878 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
98616641 TTTGACATGA
* * * * * *
98616651 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * *
98616697 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
98616743 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
98616789 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
98616835 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
98616879 AGAGCACACT
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 163 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:98618829 original size:20 final size:21
Alignment explanation
Indices: 98618806--98618844 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
98618796 ACACCTTTGA
98618806 TTTTCCCTTTTC-TTCTTTTT
1 TTTTCCCTTTTCTTTCTTTTT
* *
98618826 TTTTTCTTTTTCTTTCTTT
1 TTTTCCCTTTTCTTTCTTT
98618845 CCTTCCCCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCCCTTTTCTTTCTTTTT
Found at i:98623638 original size:40 final size:40
Alignment explanation
Indices: 98623470--98623675 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
98623460 AATGATACCT
* ** * *
98623470 GGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATTC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCC
98623510 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
*
98623550 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCT
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
* * * *** *
98623590 GGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
* * ** *
98623630 GGGTTAAGACCTGAAGGCAATT-GTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCC
98623670 -GGCTAA
1 GGGCTAA
98623676 ATTTCGAAGA
Statistics
Matches: 141, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 5 0.04
40 131 0.93
41 5 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
Found at i:98631557 original size:34 final size:34
Alignment explanation
Indices: 98631514--98631582 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
98631504 ATTAAGAGTG
98631514 TTTGTCACATAGGGGATTTAGCCTGGATTGGTAA
1 TTTGTCACATAGGGGATTTAGCCTGGATTGGTAA
98631548 TTTGTCACATAGGGGATTTAGCCTGGATTGGTAA
1 TTTGTCACATAGGGGATTTAGCCTGGATTGGTAA
98631582 T
1 T
98631583 CCCAACATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.12, G:0.29, T:0.36
Consensus pattern (34 bp):
TTTGTCACATAGGGGATTTAGCCTGGATTGGTAA
Found at i:98633612 original size:70 final size:70
Alignment explanation
Indices: 98633499--98633638 Score: 253
Period size: 70 Copynumber: 2.0 Consensus size: 70
98633489 CCCAAGCCAC
* * *
98633499 ACGGACATGTGTGACCACACAGCCCAACCTACATGGCGTGTGACTCTCTAAAGCAAGAAAATTGG
1 ACGGACATGTGTGACCACACAGCCCAACCCACATGGCGTGTGACTCTCCAAAGCAAGAAAATTGA
98633564 TTAAG
66 TTAAG
98633569 ACGGACATGTGTGACCACACAGCCCAACCCACATGGCGTGTGACTCTCCAAAGCAAGAAAATTGA
1 ACGGACATGTGTGACCACACAGCCCAACCCACATGGCGTGTGACTCTCCAAAGCAAGAAAATTGA
98633634 TTAAG
66 TTAAG
98633639 TTTCCTAAAG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.19
Consensus pattern (70 bp):
ACGGACATGTGTGACCACACAGCCCAACCCACATGGCGTGTGACTCTCCAAAGCAAGAAAATTGA
TTAAG
Found at i:98642691 original size:17 final size:17
Alignment explanation
Indices: 98642669--98642703 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
98642659 TATAGACTCG
*
98642669 TTTAGATATACTTAGTA
1 TTTAGATATAATTAGTA
98642686 TTTAGATATAATTAGTA
1 TTTAGATATAATTAGTA
98642703 T
1 T
98642704 AATATATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49
Consensus pattern (17 bp):
TTTAGATATAATTAGTA
Found at i:98643881 original size:2 final size:2
Alignment explanation
Indices: 98643874--98643900 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
98643864 TTATATGACC
98643874 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
98643901 AACTTGAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98650551 original size:102 final size:102
Alignment explanation
Indices: 98650375--98650579 Score: 394
Period size: 102 Copynumber: 2.0 Consensus size: 102
98650365 CTAGGGTAAA
98650375 ATTGTAAATTAGCCAAAATGAATGTGTTAGGCTAAATTGAATTGAATGAAAGTTTGAATGAGTTA
1 ATTGTAAATTAGCCAAAATGAATGTGTTAGGCTAAATTGAATTGAATGAAAGTTTGAATGAGTTA
98650440 ATTTGATATTATATAGATCAAGATAAGCAAATATCGG
66 ATTTGATATTATATAGATCAAGATAAGCAAATATCGG
98650477 ATTGTAAATTAGCCAAAATGAATGTGTTTA-GCTAAATTGAATTGAATGAAAGTTTGAATGAGTT
1 ATTGTAAATTAGCCAAAATGAATGTG-TTAGGCTAAATTGAATTGAATGAAAGTTTGAATGAGTT
98650541 AATTTGATATTATATAGATCAAGATAAGCAAATATCGG
65 AATTTGATATTATATAGATCAAGATAAGCAAATATCGG
98650579 A
1 A
98650580 ACTAGATCGG
Statistics
Matches: 102, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
102 99 0.97
103 3 0.03
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.34
Consensus pattern (102 bp):
ATTGTAAATTAGCCAAAATGAATGTGTTAGGCTAAATTGAATTGAATGAAAGTTTGAATGAGTTA
ATTTGATATTATATAGATCAAGATAAGCAAATATCGG
Found at i:98650926 original size:22 final size:22
Alignment explanation
Indices: 98650896--98650966 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
98650886 AGCTAACCGT
*
98650896 TTCAACTCGATAGAGCTTACTA
1 TTCAGCTCGATAGAGCTTACTA
*
98650918 TTCAGCTCGATAGAGCTTACTGT
1 TTCAGCTCGATAGAGCTTACT-A
*
98650941 TTCAGCTC-ATTAGAGTTTACTA
1 TTCAGCTCGA-TAGAGCTTACTA
98650963 TTCA
1 TTCA
98650967 TCAGCTCAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 25 0.58
23 18 0.42
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (22 bp):
TTCAGCTCGATAGAGCTTACTA
Found at i:98650948 original size:23 final size:23
Alignment explanation
Indices: 98650851--98650961 Score: 104
Period size: 23 Copynumber: 4.8 Consensus size: 23
98650841 GGACTCACCA
98650851 CAGCTCG-TAAGAGCTTACTGTTTT
1 CAGCTCGAT-AGAGCTTACTG-TTT
* * *
98650875 TAGCTC-ATTAGAGCTAACCGTTT
1 CAGCTCGA-TAGAGCTTACTGTTT
* *
98650898 CAACTCGATAGAGCTTACT-ATT
1 CAGCTCGATAGAGCTTACTGTTT
98650920 CAGCTCGATAGAGCTTACTGTTT
1 CAGCTCGATAGAGCTTACTGTTT
*
98650943 CAGCTC-ATTAGAGTTTACT
1 CAGCTCGA-TAGAGCTTACT
98650962 ATTCATCAGC
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
22 21 0.30
23 34 0.48
24 15 0.21
25 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (23 bp):
CAGCTCGATAGAGCTTACTGTTT
Found at i:98655079 original size:46 final size:46
Alignment explanation
Indices: 98655027--98655295 Score: 257
Period size: 46 Copynumber: 5.8 Consensus size: 46
98655017 TATTTGGGCA
98655027 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
98655073 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
98655118 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
98655166 TCCGAACTCGTTGAGTTGAGTCCGACTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * * *
98655211 CATCCGAGCTCGTTGAGTTGAGTCCAACTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
98655259 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98655296 GCGGGTTACA
Statistics
Matches: 182, Mismatches: 23, Indels: 36
0.76 0.10 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.04
45 6 0.03
46 89 0.49
47 54 0.30
48 5 0.03
50 8 0.04
51 6 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:98655182 original size:93 final size:93
Alignment explanation
Indices: 98655023--98655287 Score: 458
Period size: 93 Copynumber: 2.8 Consensus size: 93
98655013 CAGATATTTG
* *
98655023 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTTGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
98655088 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
98655116 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
98655181 TTGAGTCCGACTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * ** *
98655209 GGCATCCGAGCTCGTTGAGTTGAGTCCAACTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
98655274 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98655288 ACTTATGGGC
Statistics
Matches: 163, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98655241 original size:47 final size:47
Alignment explanation
Indices: 98655073--98655241 Score: 186
Period size: 47 Copynumber: 3.6 Consensus size: 47
98655063 GATGCGAACG
* *
98655073 TCCGAACTTGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGACTTCGTGAGATGTAACTAGGCA
* * * * *
98655120 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCCGACTTC-GTGA--GATG-TAACTAGGCA
98655166 TCCGAACTCGTTGAGTTGAGTCCGACTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGACTTCGTGAGATGTAACTAGGCA
* *
98655213 TCCGAGCTCGTTGAGTTGAGTCCAACTTC
1 TCCGAACTCGTTGAGTTGAGTCCGACTTC
98655242 ACTTATGGAT
Statistics
Matches: 101, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 27 0.27
47 54 0.53
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGACTTCGTGAGATGTAACTAGGCA
Found at i:98672469 original size:2 final size:2
Alignment explanation
Indices: 98672462--98672500 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
98672452 GAAATCAACC
98672462 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98672501 AACATAACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:98672835 original size:26 final size:26
Alignment explanation
Indices: 98672799--98672866 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
98672789 ACTCGAAAAA
98672799 GCTCACACGAGTTGTGAAATGAGCCT
1 GCTCACACGAGTTGTGAAATGAGCCT
*
98672825 GCTCACACGAGTTGTGAAATGGGCCT
1 GCTCACACGAGTTGTGAAATGAGCCT
98672851 GCTCACACGAGTTGTG
1 GCTCACACGAGTTGTG
98672867 GGTCAGAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (26 bp):
GCTCACACGAGTTGTGAAATGAGCCT
Found at i:98676621 original size:27 final size:28
Alignment explanation
Indices: 98676577--98676635 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
98676567 TTGTACTTTT
*
98676577 TTTAATTAATAACATTATTTTATTTTAA
1 TTTAATTAATAAAATTATTTTATTTTAA
*
98676605 TTTAATT-ATAAAATTATTTTATTTTAT
1 TTTAATTAATAAAATTATTTTATTTTAA
98676632 TTTA
1 TTTA
98676636 TGAAATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTAATTAATAAAATTATTTTATTTTAA
Found at i:98676624 original size:22 final size:22
Alignment explanation
Indices: 98676596--98676669 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
98676586 TAACATTATT
98676596 TTATTTTAATTTAATTATAAAA
1 TTATTTTAATTTAATTATAAAA
* * *
98676618 TTATTTTATTTTATTTTATGAAA
1 TTATTTTAATTTA-ATTATAAAA
*
98676641 TTA-TTTAATTT-ATT-TTAAA
1 TTATTTTAATTTAATTATAAAA
*
98676660 TTATATTAAT
1 TTATTTTAAT
98676670 GTGGAGAGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 7 0.16
20 7 0.16
22 19 0.44
23 10 0.23
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (22 bp):
TTATTTTAATTTAATTATAAAA
Found at i:98677248 original size:28 final size:28
Alignment explanation
Indices: 98677190--98677248 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
98677180 ATTATTAATG
** *
98677190 ATAAAATTATATTTTAATCTTTAAAATA
1 ATAAAATTATATTTTAATCGATAAAAAA
*
98677218 ATAAAATTATATTTTTA-CGATAATAAAA
1 ATAAAATTATATTTTAATCGATAA-AAAA
98677246 ATA
1 ATA
98677249 TACAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (28 bp):
ATAAAATTATATTTTAATCGATAAAAAA
Found at i:98683400 original size:13 final size:14
Alignment explanation
Indices: 98683370--98683403 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
98683360 AAAAGTAAGT
*
98683370 CATTTTCTAGAAAT
1 CATTTTCTAGAAAC
98683384 CATTTTCT-GAAAC
1 CATTTTCTAGAAAC
98683397 CATTTTC
1 CATTTTC
98683404 AGTGAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (14 bp):
CATTTTCTAGAAAC
Found at i:98688782 original size:96 final size:94
Alignment explanation
Indices: 98688613--98688987 Score: 448
Period size: 96 Copynumber: 3.9 Consensus size: 94
98688603 AAGAGGGTGA
* * *
98688613 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCTGATGCCATGTC
* *
98688678 CCAGACATGGTCTTACACTAGCTCTCGTCTC
66 CCAAACATGGTCTTACACTGGCTCTC--CTC
* * * *
98688709 ATTGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCTGATGCCATGT
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACAT-ATCGTGGCTGATGCCATGT
* * *
98688773 TCCAAACATGGTCTTACACTGGCTCTCATA
65 CCCAAACATGGTCTTACACTGGCTCTCCTC
* * ** *
98688803 ATGTGGCCGATGCCATGTTCCAAACATGCTCTTACACTAGCGCACATATTAATGTC-GATGCCAT
1 AT-T-GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA-TCGTGGCTGATGCCAT
* *
98688867 GTCCCAAATATGGTCTTACACTGGCTCTCACAAC
63 GTCCCAAACATGGTCTTACACTGGCTCTC-C-TC
* * * *
98688901 ATTGCTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCTAATGCCATGTT
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCTGATGCCATGTC
*
98688966 CCAAACATGGTCTTAAACTGGC
66 CCAAACATGGTCTTACACTGGC
98688988 ACACATATCA
Statistics
Matches: 235, Mismatches: 36, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
94 3 0.01
95 6 0.03
96 219 0.93
97 5 0.02
98 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCTGATGCCATGTC
CCAAACATGGTCTTACACTGGCTCTCCTC
Found at i:98688880 original size:144 final size:144
Alignment explanation
Indices: 98688619--98688997 Score: 499
Period size: 144 Copynumber: 2.6 Consensus size: 144
98688609 GTGAATTGCC
* * * * *
98688619 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
* * * * * *
98688684 ATGGTCTTACACTAGCTCTCGTCTCATTGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCACACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCT
* **
98688749 CTCATAATGTGGCT
131 CTCACAACATGGCT
*
98688763 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATGTTCCAAA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCTGATGCCATGTTCCAAA
* * * * * * *
98688827 CATGCTCTTACACTAGCGCACATATTAATGTCGATGCCATGTCCCAAATATGGTCTTACACTGGC
65 CATGGTCTTACACTAGCACACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACACTAGC
*
98688892 TCTCACAACATTGCT
130 TCTCACAACATGGCT
* *
98688907 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCTAATGCCATGTTCCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
* *
98688972 ATGGTCTTAAACTGGCACACATATCA
66 ATGGTCTTACACTAGCACACATATCA
98688998 CCTAAATGTC
Statistics
Matches: 203, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
143 2 0.01
144 200 0.99
145 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (144 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCACACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCT
CTCACAACATGGCT
Found at i:98688996 original size:48 final size:48
Alignment explanation
Indices: 98688619--98688980 Score: 406
Period size: 48 Copynumber: 7.5 Consensus size: 48
98688609 GTGAATTGCC
* * * *
98688619 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
* * * * * * *
98688667 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
* * *
98688715 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-ATCGTGGCT
* *
98688763 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-ATCGTGGCT
* * * ** *
98688811 GATGCCATGTTCCAAACATGCTCTTACACTAGCGCACATATTAATGTC-
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATA-TCGTGGCT
* * * * * * *
98688859 GATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCACAACATTGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
98688907 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
*
98688955 AATGCCATGTTCCAAACATGGTCTTA
1 GATGCCATGTTCCAAACATGGTCTTA
98688981 AACTGGCACA
Statistics
Matches: 264, Mismatches: 46, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
47 4 0.02
48 256 0.97
49 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
Found at i:98691840 original size:20 final size:21
Alignment explanation
Indices: 98691801--98691840 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
98691791 AAGGGCTATT
*
98691801 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
98691822 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
98691841 TTTGAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:98692591 original size:48 final size:48
Alignment explanation
Indices: 98692486--98692696 Score: 211
Period size: 48 Copynumber: 4.5 Consensus size: 48
98692476 TATGTGTGCT
* * **
98692486 AGTGTAAGACATGTCTGGGACATGCATC-GAC-C-ACATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACA-AGCC
* * *
98692532 AGAGTAAGACATGTTTGGGACATGCATCAGCCTCGAAATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCC
* ** * *
98692580 AGTGTAAGACATGTCTGGG-CATGTATCAGCACT-GAGA-CGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CTCGAGATATACAAGCC
* *
98692625 AGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCC
* *
98692673 AGTGTAAGACCTATCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
98692697 GCACCAACAC
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 24 0.18
46 40 0.29
47 16 0.12
48 50 0.37
49 6 0.04
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCC
Found at i:98692646 original size:93 final size:94
Alignment explanation
Indices: 98692486--98692801 Score: 284
Period size: 93 Copynumber: 3.3 Consensus size: 94
98692476 TATGTGTGCT
** *
98692486 AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCCAGAGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATAACGAGAGCCAGAGTAAGACATGTCTGGG
98692551 ACATGCATCAGCCTCGAAATATACAAGCC
66 ACATGCATCAGCCTCGAAATATACAAGCC
* * * *
98692580 AGTGTAAGACATGTCTGGG-CATGTATC-AGCAC-TGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAT-A-ACGAGAGCCAGAGTAAGACATGTCTG
* * *
98692642 GGACATGCATCAGTCTCGAGATATACAAGCT
64 GGACATGCATCAGCCTCGAAATATACAAGCC
* * * * * * *
98692673 AGTGTAAGACCTATCTGGGACATGGCA-CCAACACTAATAGATGAGAGCCA-ATGTAAAACTTGT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCAC--ATA-ACGAGAGCCAGA-GTAAGACATGT
* * * * *
98692736 TTGGGACACGATATCAGCCTCGAGATATGA-AAGTC
61 CTGGGACATG-CATCAGCCTCGAAATAT-ACAAGCC
* *
98692771 AGTGTAAGTCCTGTCTGGGACATGGCATCGA
1 AGTGTAAGACATGTCTGGGACAT-GCATCGA
98692802 TTTTGATGTG
Statistics
Matches: 182, Mismatches: 28, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
91 1 0.01
92 5 0.03
93 73 0.40
94 23 0.13
95 6 0.03
97 27 0.15
98 44 0.24
99 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATAACGAGAGCCAGAGTAAGACATGTCTGGG
ACATGCATCAGCCTCGAAATATACAAGCC
Found at i:98708330 original size:40 final size:40
Alignment explanation
Indices: 98708275--98708452 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
98708265 TGGATGATAA
* * *
98708275 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
98708315 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
98708355 TCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
98708395 CCGGGCTATGTCCCGAAGGTATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
98708435 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
98708453 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 16 0.13
40 107 0.87
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:98715048 original size:29 final size:29
Alignment explanation
Indices: 98714954--98715026 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
98714944 GTGACGAGAT
98714954 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
98714983 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
98715012 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
98715027 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:98715122 original size:2 final size:2
Alignment explanation
Indices: 98715117--98715155 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
98715107 GTGTGCGTAC
98715117 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98715156 CTCCGATCGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98717502 original size:144 final size:144
Alignment explanation
Indices: 98717236--98717601 Score: 486
Period size: 144 Copynumber: 2.5 Consensus size: 144
98717226 GTGAATTGCT
* * * * *
98717236 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
* * * * *
98717301 ATGGTCTTACACTAGCTCTCGTCTCATTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
* ** *
98717366 CTCATAATGTGGCC
131 CTCACAACATCGCC
*
98717380 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCCATGTTCCAAA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCTGATGCCATGTTCCAAA
* * * *
98717444 CATTGTCTTACACTAGCGCACATATCAATGCTGATGCCATGTCCTAGACATAGG-CTTACACTGG
65 CATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGACAT-GGTCTTACACTAG
98717508 CTCTCACAACATCGCC
129 CTCTCACAACATCGCC
* *
98717524 GATGTCATGTTCCAAACATGGTCTTACACTGGCTCTTATATCGTGG-TCGATGCCATGTTCCAAA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCT-GATGCCATGTTCCAAA
*
98717588 CATGGTCTTGCACT
65 CATGGTCTTACACT
98717602 GGCATACATA
Statistics
Matches: 194, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
143 3 0.02
144 188 0.97
145 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (144 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
CTCACAACATCGCC
Found at i:98717613 original size:48 final size:48
Alignment explanation
Indices: 98717236--98717613 Score: 354
Period size: 48 Copynumber: 7.9 Consensus size: 48
98717226 GTGAATTGCT
* * *
98717236 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGTGGCC
* * * * * * * *
98717284 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGTGGCC
* * * *
98717332 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCGTGGCC
* * *
98717380 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCGTGGCC
* * * * *
98717428 GATGCCATGTTCCAAACATTGTCTTACACTAGCGCACATATCAAT-GCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-GTGGCC
* * * * * *
98717476 GATGCCATG-TCCTAGACATAGG-CTTACACTGGCTCTCACAACATCGCC
1 GATGCCATGTTCC-AAACAT-GGTCTTACACTGGCTCACATATCGTGGCC
* ** *
98717524 GATGTCATGTTCCAAACATGGTCTTACACTGGCTCTTATATCGTGGTC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGTGGCC
*
98717572 GATGCCATGTTCCAAACATGGTCTTGCACTGGCAT-ACATATC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGC-TCACATATC
98717614 ACCCAAATGT
Statistics
Matches: 276, Mismatches: 45, Indels: 18
0.81 0.13 0.05
Matches are distributed among these distances:
47 9 0.03
48 260 0.94
49 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGTGGCC
Found at i:98720384 original size:18 final size:17
Alignment explanation
Indices: 98720344--98720385 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
98720334 ATCATTTCAT
98720344 TTCTTTATCTTTCTTTC
1 TTCTTTATCTTTCTTTC
*
98720361 TCTCTTTATCTTTGTATTC
1 T-TCTTTATCTTTCT-TTC
98720380 TTCTTT
1 TTCTTT
98720386 TAGTTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 17 0.77
19 4 0.18
ACGTcount: A:0.07, C:0.21, G:0.02, T:0.69
Consensus pattern (17 bp):
TTCTTTATCTTTCTTTC
Found at i:98741701 original size:19 final size:17
Alignment explanation
Indices: 98741660--98741703 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
98741650 AATTCTTGTC
*
98741660 AAAAAAAATTAAATATT
1 AAAAATAATTAAATATT
98741677 ATAAAATAATTAAATTATGT
1 A-AAAATAATTAAA-TAT-T
98741697 AAAAATA
1 AAAAATA
98741704 TGAACATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 11 0.48
19 9 0.39
20 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAAATAATTAAATATT
Found at i:98746355 original size:46 final size:46
Alignment explanation
Indices: 98746171--98746432 Score: 207
Period size: 46 Copynumber: 5.6 Consensus size: 46
98746161 AAGTTGATAC
* * * *
98746171 CATGTCCCAGACATGGTCTTACATTAACTCTCACATATCTGTGCTGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCT--CAT-TTTGTGCCGATG
* *
98746220 CCATGTCCCAGACATGGTCTTACACT-G-ACACATTTTGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCATTTTGT-GCCGATG
* * * * *
98746266 CATGTCCTC-GACAT-GTCTTACATTGGCT-TACATCTCGAGGCCGATG
1 CATGTCC-CAGACATGGTCTTACACTAGCTCT-CATTTTG-TGCCGATG
*
98746312 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATTTTAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATTTT-GTGCCGATG
* * ** *
98746358 CCATGTCCCAGATATGGTCTTACACT-GACTCCCATAATGTGGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTAG-CTCTCATTTTGT-GCCGATG
98746406 CATGTCCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
98746433 ACACAAATGA
Statistics
Matches: 173, Mismatches: 25, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
44 9 0.05
45 18 0.10
46 68 0.39
47 30 0.17
48 24 0.14
50 24 0.14
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATTTTGTGCCGATG
Found at i:98746408 original size:94 final size:93
Alignment explanation
Indices: 98746170--98746437 Score: 296
Period size: 94 Copynumber: 2.8 Consensus size: 93
98746160 CAAGTTGATA
* *
98746170 CCATGTCCCAGACATGGTCTTACATTAACTCTCACATATCTGTGCTGATGCCATGTCCCAGACAT
1 CCATGTCCCAGACATGGTCTTACATTGACTC-C-CATATGTG-GCTGATG-CATGTCCCAGACAT
*
98746235 GGTCTTACACT-G-ACACATTTTGTAGCCGATG
62 -GTCTTACACTAGCACACATTTTATAGCCGATG
* ** * * *
98746266 -CATGTCCTC-GACAT-GTCTTACATTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACATGT
1 CCATGTCC-CAGACATGGTCTTACATTGACTCCCATAT-GTGGCTGATGCATGTCCCAGACATGT
* *
98746328 CTTACACTAGCTCTCATTTTA-ATGCCGATG
64 CTTACACTAGCACACATTTTATA-GCCGATG
* *
98746358 CCATGTCCCAGATATGGTCTTACACTGACTCCCATAATGTGGCTGATGCATGTCCCAGACATGTC
1 CCATGTCCCAGACATGGTCTTACATTGACTCCCAT-ATGTGGCTGATGCATGTCCCAGACATGTC
98746423 TTACACTAGCACACA
65 TTACACTAGCACACA
98746438 AATGACCCGA
Statistics
Matches: 142, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
90 10 0.07
91 16 0.11
92 25 0.18
93 12 0.08
94 65 0.46
95 13 0.09
96 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
CCATGTCCCAGACATGGTCTTACATTGACTCCCATATGTGGCTGATGCATGTCCCAGACATGTCT
TACACTAGCACACATTTTATAGCCGATG
Found at i:98746421 original size:140 final size:140
Alignment explanation
Indices: 98746171--98746427 Score: 342
Period size: 140 Copynumber: 1.8 Consensus size: 140
98746161 AAGTTGATAC
* * *
98746171 CATGTCCCAGACATGGTCTTACATTAACTCTCACATATCTGTGCTGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTAACTCT-ACATATCTATGCCGATGCCATGTCCCAGACATG
**
98746236 GTCTTACACTGACACATTTTGTAGCCGATGCATGTCCTCGACATGTCTTACATTGGCTTACATCT
65 GTCTTACACTGACACATAATGTAGCCGATGCATGTCCTCGACATGTCTTACATTGGCTTACATCT
98746301 CGAGGCCGATG
130 CGAGGCCGATG
* * *
98746312 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CAT-TTTAATGCCGATGCCATGTCCCAGATATG
1 CATGTCCCAGACATGGTCTTACACTAACTCTACATATCT-ATGCCGATGCCATGTCCCAGACATG
* * *
98746374 GTCTTACACTGACTCCCATAATGTGGCTGATGCATGTCC-CAGACATGTCTTACA
65 GTCTTACACTGA--CACATAATGTAGCCGATGCATGTCCTC-GACATGTCTTACA
98746428 CTAGCACACA
Statistics
Matches: 101, Mismatches: 11, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
137 2 0.02
138 37 0.37
139 1 0.01
140 47 0.47
141 14 0.14
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAACTCTACATATCTATGCCGATGCCATGTCCCAGACATGG
TCTTACACTGACACATAATGTAGCCGATGCATGTCCTCGACATGTCTTACATTGGCTTACATCTC
GAGGCCGATG
Found at i:98750948 original size:46 final size:48
Alignment explanation
Indices: 98750818--98750986 Score: 133
Period size: 46 Copynumber: 3.6 Consensus size: 48
98750808 ATCTGTGTCG
* * * *
98750818 ATGCCATGTCCCAGACATGGTCTTACACTAACAC--A-TCTC-GTAGTCA
1 ATGCCATGTCCAAGACAT-GTCTTACACTAGCACTTAGTCTCAAT-GCCA
* * * * *
98750864 AT-ACATGTCCCAGACATGTCTTACACT-G-GCTTACGTCTCGA-GACCG
1 ATGCCATGTCCAAGACATGTCTTACACTAGCACTTA-GTCTCAATG-CCA
*
98750910 ATG-CATGTTCAAGACATGTCTTACACTAGCACTT-GTCTCAATGCCA
1 ATGCCATGTCCAAGACATGTCTTACACTAGCACTTAGTCTCAATGCCA
*
98750956 ATGCCATGTCCCAGACATGTCTTACACTAGC
1 ATGCCATGTCCAAGACATGTCTTACACTAGC
98750987 TCACACAAGT
Statistics
Matches: 99, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.01
44 11 0.11
45 15 0.15
46 42 0.42
47 27 0.27
48 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCAAGACATGTCTTACACTAGCACTTAGTCTCAATGCCA
Found at i:98756708 original size:47 final size:47
Alignment explanation
Indices: 98756639--98756811 Score: 310
Period size: 47 Copynumber: 3.7 Consensus size: 47
98756629 GGTATAGTGC
*
98756639 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
*
98756686 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTTATCCATCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
*
98756733 CGATGCCATGTCCCAAATATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
*
98756780 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 CGATGCCATGTCCCAAACATGGTCTTACACTG
98756812 ACACATTTTT
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:98756882 original size:46 final size:46
Alignment explanation
Indices: 98756831--98756997 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 46
98756821 TTAGCCGACA
* *
98756831 CATGTCCTAGACATGTCTTACACTGGCTCTCATAATATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGCCGATG
* **
98756877 CATGTCCCAGACATGTCTTACA-TAAGCTCTTGTC-TCA-AT-GCTAAT-
1 CATGTCCCAGACATGTCTTACACT-AGCTC---TCATAATATGGCCGATG
*
98756922 CATATGTCCCAGACATGATCTTACACTAGCTCTCATAATGTGGCCGATG
1 C--ATGTCCCAGACATG-TCTTACACTAGCTCTCATAATATGGCCGATG
*
98756971 CATGTCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
98756998 ACACAAATGA
Statistics
Matches: 99, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
45 4 0.04
46 43 0.43
47 30 0.30
48 18 0.18
49 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGCCGATG
Found at i:98760824 original size:40 final size:40
Alignment explanation
Indices: 98760627--98760830 Score: 221
Period size: 40 Copynumber: 5.1 Consensus size: 40
98760617 TGAATGATAC
* * ** * **
98760627 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * * ** *
98760667 CCGGGTTAAGACCCGAAGGAAATT-GTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTGGTTATAT
*
98760707 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * *
98760747 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
**
98760787 CCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
98760827 CCGG
1 CCGG
98760831 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 3 0.02
40 133 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
Found at i:98761784 original size:15 final size:15
Alignment explanation
Indices: 98761764--98761794 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98761754 CTATCGCGAC
98761764 TTTGAAAATTTACTA
1 TTTGAAAATTTACTA
98761779 TTTGAAAATTTACTA
1 TTTGAAAATTTACTA
98761794 T
1 T
98761795 AAATTATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (15 bp):
TTTGAAAATTTACTA
Found at i:98768661 original size:40 final size:40
Alignment explanation
Indices: 98768606--98768792 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
98768596 TGAATGATAC
* * * * *
98768606 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTACTTATAT
* * * * *
98768646 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-ACTTATAT
* **
98768687 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTACTTATAT
* *
98768727 CCGGGCTAATACCCGAAGGCATTTGTGCAAGT-CGT-TAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTACTTATAT
*
98768765 CCGGGCTAAGACCCGAAGGCATTCGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
98768793 TGTGGTTATA
Statistics
Matches: 124, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
38 29 0.23
39 1 0.01
40 61 0.49
41 33 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTACTTATAT
Found at i:98768741 original size:81 final size:77
Alignment explanation
Indices: 98768606--98768807 Score: 226
Period size: 81 Copynumber: 2.6 Consensus size: 77
98768596 TGAATGATAC
* * ** * *
98768606 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
98768671 TGCTAGT-GACTAACAT
65 TGCAAGTCG--T--CAT
* * *
98768687 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
98768752 TGCAAGTCGTTAT
65 TGCAAGTCGTCAT
* *
98768765 CCGGGCTAAGACCCGAAGGCATTCGTGCTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAGTAGTTATATCCGG
98768808 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
77 13 0.12
78 30 0.28
80 1 0.01
81 61 0.58
82 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTGT
GCAAGTCGTCAT
Found at i:98776742 original size:40 final size:40
Alignment explanation
Indices: 98776545--98776748 Score: 230
Period size: 40 Copynumber: 5.1 Consensus size: 40
98776535 TGAATGATAC
* * ** * **
98776545 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * ** *
98776585 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTTATAT
*
98776625 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * *
98776665 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
**
98776705 CCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
98776745 CCGG
1 CCGG
98776749 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 3 0.02
40 135 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
Found at i:98778996 original size:48 final size:48
Alignment explanation
Indices: 98778914--98779076 Score: 188
Period size: 48 Copynumber: 3.4 Consensus size: 48
98778904 ATACTAGGGT
*
98778914 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
* * * **
98778962 TATGAGAGCTAGTGTAAGACCATTTCTTGG-ACATGGCATC-AGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGA-CATTGA
* *
98779010 TATGTA-AGCCAGTGTAAGACCATGTTTGGAACATGGCAACGGCATTGA
1 TATG-AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
* *
98779058 TAGGAGAGCTAGTGTAAGA
1 TATGAGAGCCAGTGTAAGA
98779077 ATAAGTTTGA
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
47 6 0.06
48 83 0.88
49 5 0.05
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
Found at i:98780106 original size:35 final size:35
Alignment explanation
Indices: 98780043--98780125 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 35
98780033 TAGCTTGCTG
* * * * * *
98780043 GAGCGACATCGTGAAAACGGTATTCAGGCTCTTTA
1 GAGCGACACCATGTAAACGATATGCAGGCTCTATA
* *
98780078 GAGTGACACCATGTAAACGATATGCAGGCTCTATG
1 GAGCGACACCATGTAAACGATATGCAGGCTCTATA
98780113 GAGCGACACCATG
1 GAGCGACACCATG
98780126 AAAGGGTCTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (35 bp):
GAGCGACACCATGTAAACGATATGCAGGCTCTATA
Found at i:98781533 original size:18 final size:18
Alignment explanation
Indices: 98781510--98781548 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
98781500 TGCTTCTAAG
*
98781510 AAGCGCTTTTGGGAAAAA
1 AAGCGCTTTTGAGAAAAA
*
98781528 AAGCGCTTTTGAGAGAAA
1 AAGCGCTTTTGAGAAAAA
98781546 AAG
1 AAG
98781549 TGTTTTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.28, T:0.21
Consensus pattern (18 bp):
AAGCGCTTTTGAGAAAAA
Found at i:98783454 original size:40 final size:39
Alignment explanation
Indices: 98783265--98783459 Score: 205
Period size: 40 Copynumber: 4.9 Consensus size: 39
98783255 TCTTCGGAAT
* * *
98783265 TTAG-CCGGATATAACCGCAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * * *
98783304 TTAACCCGGATTTGGTA-ACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT--AACACTAGCACAAATGCCTTCGGGTC
* *
98783344 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* * *
98783384 TTAGCCCAGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
*
98783424 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCG
98783460 ATACTTAGCT
Statistics
Matches: 133, Mismatches: 17, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 127 0.95
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:98783454 original size:80 final size:79
Alignment explanation
Indices: 98783265--98783459 Score: 230
Period size: 80 Copynumber: 2.4 Consensus size: 79
98783255 TCTTCGGAAT
* * * * * *** *
98783265 TTAG-CCGGATATAACCGCAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTCGCAC
98783329 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
98783344 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCAGATATAACAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTCGCAC
*
98783409 GAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
*
98783424 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCG
98783460 ATACTTAGCT
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 5 0.05
80 91 0.94
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTCGCACA
AATGCCTTCGGGTC
Found at i:98783468 original size:40 final size:40
Alignment explanation
Indices: 98783285--98783459 Score: 226
Period size: 40 Copynumber: 4.4 Consensus size: 40
98783275 ATAACCGCAA
* * * *** *
98783285 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
98783325 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
98783365 GCACGAATGCCTTCGGGTCTTAGCCCAGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
98783405 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
*
98783445 GCATAAATGCCTTCG
1 GCACAAATGCCTTCG
98783460 ATACTTAGCT
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 120 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:98786789 original size:47 final size:47
Alignment explanation
Indices: 98786680--98786790 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
98786670 CCGGGATAAG
*
98786680 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
98786727 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
98786774 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
98786791 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:98787561 original size:4 final size:4
Alignment explanation
Indices: 98787547--98787579 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
98787537 AAATTTCCCT
98787547 TTTC TTTTC TTTC TTTC TTTC -TTC TTTC TTTC T
1 TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
98787580 CACGTTTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:98793316 original size:47 final size:47
Alignment explanation
Indices: 98793207--98793317 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
98793197 CCGGGATAAG
* *
98793207 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
98793254 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
98793301 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
98793318 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:98794090 original size:4 final size:4
Alignment explanation
Indices: 98794081--98794109 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
98794071 CCCTTTTCTA
98794081 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
98794110 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:98800618 original size:4 final size:4
Alignment explanation
Indices: 98800609--98800637 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
98800599 CCCTTTTCTA
98800609 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
98800638 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:98804120 original size:42 final size:42
Alignment explanation
Indices: 98804061--98804142 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
98804051 ATTTTGGTAC
*
98804061 GAAAATTTTACCGATTGTGTGTTTAATTAGGGAAAGGACTGT
1 GAAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACTGT
98804103 GAAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACT
1 GAAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACT
98804143 AAATTACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (42 bp):
GAAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACTGT
Found at i:98809614 original size:12 final size:11
Alignment explanation
Indices: 98809577--98809619 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
98809567 TAGATTAATT
*
98809577 TAAATAATTAT
1 TAAATAATTAA
*
98809588 TAAAATAAATAA
1 T-AAATAATTAA
98809600 TAAATAATTACA
1 TAAATAATTA-A
98809612 TAAATAAT
1 TAAATAAT
98809620 AACAATAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAATAATTAA
Found at i:98813078 original size:24 final size:24
Alignment explanation
Indices: 98813049--98813096 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 24
98813039 TAAGAAGACT
*
98813049 ATATATAAAACTATAATAAATAAACA
1 ATAT-TAAAA-TAAAATAAATAAACA
98813075 ATATTAAAATAAAATAAATAAA
1 ATATTAAAATAAAATAAATAAA
98813097 TATAAATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
25 5 0.24
26 4 0.19
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (24 bp):
ATATTAAAATAAAATAAATAAACA
Found at i:98821504 original size:15 final size:15
Alignment explanation
Indices: 98821467--98821501 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
98821457 TTGGGTTGGC
98821467 TTTTAATTCATTTTA
1 TTTTAATTCATTTTA
*
98821482 TTTTAATTTATTTT-
1 TTTTAATTCATTTTA
98821496 TTTTAA
1 TTTTAA
98821502 ATTCCAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTAATTCATTTTA
Found at i:98821581 original size:21 final size:21
Alignment explanation
Indices: 98821557--98821598 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
98821547 TTGCTTCCCA
98821557 TTTTCTTCTTTCTTTCACTTTT
1 TTTTCTT-TTTCTTTCACTTTT
*
98821579 TTTTCTTTTTCTTTCTCTTT
1 TTTTCTTTTTCTTTCACTTT
98821599 CATTTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCTTTTTCTTTCACTTTT
Found at i:98821609 original size:27 final size:28
Alignment explanation
Indices: 98821557--98821611 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
98821547 TTGCTTCCCA
* *
98821557 TTTTCTTCTTTCTTTCACTTTTTTTTCT
1 TTTTCTTCTCTCTTTCACTTTGTTTTCT
98821585 TTTTCTT-TCTCTTTCA-TTTGGTTTTCT
1 TTTTCTTCTCTCTTTCACTTT-GTTTTCT
98821612 ACTCAAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.12
27 14 0.58
28 7 0.29
ACGTcount: A:0.04, C:0.20, G:0.04, T:0.73
Consensus pattern (28 bp):
TTTTCTTCTCTCTTTCACTTTGTTTTCT
Found at i:98823139 original size:32 final size:32
Alignment explanation
Indices: 98823103--98823170 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
98823093 AGCTATATAG
98823103 CTTAGTAAGCTCATATGCAAGAAATAAGCAAC
1 CTTAGTAAGCTCATATGCAAGAAATAAGCAAC
*
98823135 CTTAGTAAGCTCGTATGCAAGAAATAAGCAAC
1 CTTAGTAAGCTCATATGCAAGAAATAAGCAAC
98823167 CTTA
1 CTTA
98823171 CCATGCATAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (32 bp):
CTTAGTAAGCTCATATGCAAGAAATAAGCAAC
Found at i:98825219 original size:50 final size:49
Alignment explanation
Indices: 98825138--98825256 Score: 123
Period size: 49 Copynumber: 2.4 Consensus size: 49
98825128 CACTGTTGAT
* * * *
98825138 GCCACACGGCCGTGTGTGACACACGGTCTAGGCTAATTTAGGCCGTATGG
1 GCCACACGGGCATGTGGGTCACACGGTCTAGGC-AATTTAGGCCGTATGG
* * * *
98825188 GCCACACGGGCATGTGGGTCACACTGG-CTAGGCATTTTGGGTCGTGTGG
1 GCCACACGGGCATGTGGGTCACAC-GGTCTAGGCAATTTAGGCCGTATGG
* *
98825237 GCCACATGGGCTTGTGGGTC
1 GCCACACGGGCATGTGGGTC
98825257 CAAAATTTAG
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 30 0.52
50 26 0.45
51 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (49 bp):
GCCACACGGGCATGTGGGTCACACGGTCTAGGCAATTTAGGCCGTATGG
Found at i:98829452 original size:43 final size:42
Alignment explanation
Indices: 98829359--98829509 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 42
98829349 GATTTCCGAG
* *
98829359 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGTATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
* **
98829401 ATTGTGATTACGTGTAAGACCATGTCTAAGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* * * * * * * *
98829445 ATATGATTTCGTATAAGATCTTATCTGGGACAATGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
*
98829488 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
98829510 ATCCGGGATA
Statistics
Matches: 85, Mismatches: 22, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
42 1 0.01
43 82 0.96
44 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:98837216 original size:40 final size:44
Alignment explanation
Indices: 98837121--98837219 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 44
98837111 GTAACGATCC
* * *
98837121 CGCACACTTAGTGCCATCTCAAATAATCGAAGCTATCTCGATAT
1 CGCACACTTAGTGCCATCTCAAATAACCGAAGCTATCTCCAAAT
* * *
98837165 CGCACAATTAGTGCC-T-T-ATATAGCCGAAGCTAT-TCCAAAT
1 CGCACACTTAGTGCCATCTCAAATAACCGAAGCTATCTCCAAAT
98837205 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
98837220 GAACATTGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
40 19 0.40
41 13 0.27
42 1 0.02
43 1 0.02
44 14 0.29
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (44 bp):
CGCACACTTAGTGCCATCTCAAATAACCGAAGCTATCTCCAAAT
Found at i:98843967 original size:23 final size:22
Alignment explanation
Indices: 98843939--98843984 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
98843929 CAAATTAAAT
98843939 TTCTAAGATTACAAAATCATATC
1 TTCTAAGATTAC-AAATCATATC
* *
98843962 TTCTAAGATTGCATATCATATC
1 TTCTAAGATTACAAATCATATC
98843984 T
1 T
98843985 AAGATTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (22 bp):
TTCTAAGATTACAAATCATATC
Found at i:98843978 original size:17 final size:19
Alignment explanation
Indices: 98843963--98844085 Score: 186
Period size: 17 Copynumber: 6.8 Consensus size: 19
98843953 AATCATATCT
98843963 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98843982 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98844000 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
98844017 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
98844036 TCAAAGATTGGA-ATCATA
1 TCTAAGATTGCATATCATA
98844054 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
98844071 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
98844086 TGAAGATTAT
Statistics
Matches: 95, Mismatches: 3, Indels: 12
0.86 0.03 0.11
Matches are distributed among these distances:
17 32 0.34
18 31 0.33
19 32 0.34
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98844019 original size:35 final size:35
Alignment explanation
Indices: 98843963--98844080 Score: 166
Period size: 35 Copynumber: 3.3 Consensus size: 35
98843953 AATCATATCT
98843963 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
98844000 TCTAAGATTGTATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
* * *
98844036 TCAAAGATTGGAATCATATCTAAGATTG-TATCATA
1 TCTAAGATT-GTATCATATCTAAGATTGCAATCATA
98844071 TCTAAGATTG
1 TCTAAGATTG
98844081 CATATTGAAG
Statistics
Matches: 75, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
34 1 0.01
35 33 0.44
36 14 0.19
37 27 0.36
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:98844031 original size:54 final size:54
Alignment explanation
Indices: 98843963--98844085 Score: 228
Period size: 54 Copynumber: 2.3 Consensus size: 54
98843953 AATCATATCT
*
98843963 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATA
*
98844017 TCTAAGATTGCATATCATATCAAAGATTGGAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATA
98844071 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
98844086 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:98844573 original size:87 final size:87
Alignment explanation
Indices: 98844471--98844847 Score: 251
Period size: 87 Copynumber: 4.3 Consensus size: 87
98844461 ACAATATAGA
* * *
98844471 GATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGTGAAAGCCAAATCTGCTGTGTCTTTG
1 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCG
98844536 ATTTGCTCCTTGTAAACACAAG
66 ATTTGCTCCTTGTAAACACAAG
* * * *
98844558 GATGCCAAATCATCTTGGATCTGCTTCA--GTAAAATCATC-TGAAGGTCAGATCTGCTATGTCT
1 GATGCCAAATCATCTTAGATCTGCTTCAGCGT-AAA-CA-CGTGAAAGCCAAATCTGCTATGTCT
** * * ** *
98844620 TTAATCTGCTTCTTGTAAAC-TTAT
63 TCGATTTGCTCCTTGTAAACACAAG
** * * * *
98844644 GACTGTCCTGTTGAT-ATCTTCGATCTGCTCTCCGCCG-AATACA-GAG-ACGCCAAATCTG-T-
1 GA-TG-CC---AAATCATCTTAGATCTGCT-TCAG-CGTAA-ACACGTGAAAGCCAAATCTGCTA
* * *
98844703 T-TCTTCGATTTG-TTC-TCT-AACAATACAG
58 TGTCTTCGATTTGCTCCTTGTAAAC-ACA-AG
* * * * *
98844731 AGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTC
1 -GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTC
*
98844796 GATTTGCTCCTTGTAAGCACAAG
65 GATTTGCTCCTTGTAAACACAAG
* *
98844819 GATGCCAAACCATCTTGGATCTGCTTCAG
1 GATGCCAAATCATCTTAGATCTGCTTCAG
98844848 TCATCTGAAG
Statistics
Matches: 219, Mismatches: 43, Indels: 56
0.69 0.14 0.18
Matches are distributed among these distances:
82 4 0.02
83 9 0.04
84 24 0.11
85 5 0.02
86 13 0.06
87 114 0.52
88 10 0.05
89 5 0.02
90 24 0.11
91 5 0.02
92 4 0.02
93 1 0.00
94 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (87 bp):
GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCG
ATTTGCTCCTTGTAAACACAAG
Found at i:98844710 original size:44 final size:43
Alignment explanation
Indices: 98844660--98844742 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
98844650 CCTGTTGATA
**
98844660 TCTTCGATCTGCTCTCCGCCGAATACAGAGACGCCAAATCTGTT
1 TCTTCGATCTGCTCTCCAAC-AATACAGAGACGCCAAATCTGTT
* * * *
98844704 TCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCCAACAATACAGAGACGCCAAATC
98844743 ATCTTAGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 18 0.55
44 15 0.45
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCCAACAATACAGAGACGCCAAATCTGTT
Found at i:98844823 original size:261 final size:256
Alignment explanation
Indices: 98844383--98844873 Score: 759
Period size: 261 Copynumber: 1.9 Consensus size: 256
98844373 GCAAACTCAA
* *
98844383 GACTGTCATGTTGATATCTTCGATCTGCTCTCTGTCGAACACAGAGACGCCAAATCTGCTTTTTC
1 GACTGTCATGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCTTTTTC
* * * *
98844448 GATTTGTTTTCTGACAATATAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGTGA
66 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGCGA
* * * * *
98844513 AAGCCAAATCTGCTGTGTCTTTGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGAT
131 AAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
98844578 CTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTA
196 CTGCTTCAG-----TCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTA
98844643 T
256 T
* *
98844644 GACTGTCCTGTTGATATCTTCGATCTGCTCTCCGCCGAATACAGAGACGCCAAATCTG-TTTCTT
1 GACTGTCATGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCTTT-TT
* * *
98844708 CGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCG
65 CGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGCG
*
98844773 AAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGA
130 AAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGA
*
98844838 TCTGCTTCAGTCATCTGAAGGTTAGATCTGCTATGT
195 TCTGCTTCAGTCATCTGAAGGTCAGATCTGCTATGT
98844874 ATCTGCTCTC
Statistics
Matches: 211, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
256 25 0.12
260 3 0.01
261 183 0.87
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (256 bp):
GACTGTCATGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCTTTTTC
GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGCGA
AAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAGTCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTAT
Found at i:98845359 original size:205 final size:201
Alignment explanation
Indices: 98844705--98845452 Score: 1277
Period size: 200 Copynumber: 3.7 Consensus size: 201
98844695 AAATCTGTTT
98844705 CTTCGATTTGTTCTCT-AACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCA
1 CTTCGATTTGTTCTCTGAA-AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCA
98844769 CGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
*
98844834 TGGATCTGCTTCAG-TCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGATA
130 TGGATCTGCTTCAGTTCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
98844898 TGCCAGA
195 TGCCAGA
* *
98844905 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAT
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
98844970 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
98845035 GGATCTGCTTCA-TTCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGAT
131 GGATCTGCTTCAGTTCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
98845099 GCCAGA
196 GCCAGA
* *
98845105 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAACAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
98845170 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
98845235 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATTTGCTATGTATTTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGT-T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
98845300 AGATGCCAAA
192 AGATGCCAGA
*
98845310 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
98845375 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
98845440 GGATCTTGCTTCA
131 GGATC-TGCTTCA
98845453 ACTAGATCTA
Statistics
Matches: 519, Mismatches: 21, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
200 327 0.63
201 3 0.01
202 1 0.00
205 181 0.35
206 7 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (201 bp):
CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTTCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
GCCAGA
Found at i:98846408 original size:7 final size:7
Alignment explanation
Indices: 98846396--98846456 Score: 81
Period size: 7 Copynumber: 8.9 Consensus size: 7
98846386 CGCCTCTTCA
98846396 TTTTTCT
1 TTTTTCT
98846403 TTTTTCT
1 TTTTTCT
98846410 TTTTTCT
1 TTTTTCT
98846417 TTTTTC-
1 TTTTTCT
98846423 TTTTTCT
1 TTTTTCT
*
98846430 TTTTTTT
1 TTTTTCT
98846437 CTTTTTCT
1 -TTTTTCT
*
98846445 TTTCT-T
1 TTTTTCT
98846451 TTTTTC
1 TTTTTC
98846457 CCTTTTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 11 0.23
7 30 0.64
8 6 0.13
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:98846420 original size:21 final size:22
Alignment explanation
Indices: 98846396--98846467 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 22
98846386 CGCCTCTTCA
98846396 TTTTTCTTTTTTCTTTTTTCT-
1 TTTTTCTTTTTTCTTTTTTCTC
*
98846417 TTTTTC-TTTTTCTTTTTTTTC
1 TTTTTCTTTTTTCTTTTTTCTC
* *
98846438 TTTTTCTTTTCT-TTTTTTCCC
1 TTTTTCTTTTTTCTTTTTTCTC
98846459 TTTTT-TTTT
1 TTTTTCTTTT
98846468 GAAATAGAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
20 17 0.38
21 24 0.53
22 4 0.09
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (22 bp):
TTTTTCTTTTTTCTTTTTTCTC
Found at i:98846443 original size:15 final size:15
Alignment explanation
Indices: 98846402--98846466 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
98846392 TTCATTTTTC
*
98846402 TTTTTTCTTTTT-TC
1 TTTTTTCTTTTTCTT
98846416 TTTTTTCTTTTTCTT
1 TTTTTTCTTTTTCTT
98846431 TTTTTTCTTTTTCTT
1 TTTTTTCTTTTTCTT
**
98846446 TTCTTTT-TTTCCCTT
1 TT-TTTTCTTTTTCTT
98846461 TTTTTT
1 TTTTTT
98846467 TGAAATAGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
14 16 0.35
15 26 0.57
16 4 0.09
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTCTTTTTCTT
Found at i:98846467 original size:15 final size:13
Alignment explanation
Indices: 98846396--98846467 Score: 81
Period size: 14 Copynumber: 5.2 Consensus size: 13
98846386 CGCCTCTTCA
98846396 TTTTTCTTTTTTCT
1 TTTTTCTTTTTT-T
*
98846410 TTTTTCTTTTTTC
1 TTTTTCTTTTTTT
98846423 TTTTTCTTTTTTTT
1 TTTTTC-TTTTTTT
98846437 CTTTTTCTTTTCTTT
1 -TTTTTCTTTT-TTT
* *
98846452 TTTTCCCTTTTTT
1 TTTTTCTTTTTTT
98846465 TTT
1 TTT
98846468 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
13 12 0.24
14 30 0.59
15 9 0.18
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:98848524 original size:39 final size:39
Alignment explanation
Indices: 98848489--98848941 Score: 476
Period size: 40 Copynumber: 11.5 Consensus size: 39
98848479 GGATATAGTA
* * * * *
98848489 CCAGTACGAAGCCTGCGGACCTTAAGTCCGAATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * *
98848528 CCAGCATGAAGCCTACGGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * *
98848567 CCAGCACGAAGCCTGCGGGTCTTTAAGGCCAGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
* * * *
98848607 CCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACAATT
* * * * *
98848647 CCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
* * * *
98848687 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGA-AGCCTGC-GGACCTTAAGTCCGGATACAATT
*
98848727 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
98848766 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * * * *
98848805 CCAGCACAAAGCCTGCGGGTCTTTAAGCCCAGATATAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
** * * * *
98848845 CCAGCATAAAGCCTGCGGGTCTTTAAGCCCAGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
*
98848885 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
*
98848924 CCAGCACAAAGCCTGCGG
1 CCAGCACGAAGCCTGCGG
98848942 GTCTTTAAGC
Statistics
Matches: 362, Mismatches: 46, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
39 154 0.43
40 207 0.57
41 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
Found at i:98848647 original size:80 final size:80
Alignment explanation
Indices: 98848453--98848958 Score: 563
Period size: 79 Copynumber: 6.4 Consensus size: 80
98848443 CAATCACCAA
* ** * * * * * * * *
98848453 CACAAAGCCTACGGGAGTTTAAGCTCGGATATAGTACCAGTACGAAGCCTGC-GGACCTTAAGTC
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
* * * *
98848517 CGAATATAGTACCAG
66 CGGATACAATTCCAG
** * * * *
98848532 CATGAAGCCTACGGATC-TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGGC
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
*
98848596 CAGATACAATTCCAG
66 CGGATACAATTCCAG
* * *
98848611 CACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCC
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
*
98848676 CGGATATAATTCCAG
66 CGGATACAATTCCAG
* * * * * *
98848691 CATATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCTTGC-GGACCTTAAGTC
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
98848755 CGGATACAATTCCAG
66 CGGATACAATTCCAG
* * * * *
98848770 CACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCC
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
* *
98848834 CAGATATAATTCCAG
66 CGGATACAATTCCAG
* * * * * *
98848849 CATAAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCTTGC-GGACCTTAAGTC
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
98848913 CGGATACAATTCCAG
66 CGGATACAATTCCAG
*
98848928 CACAAAGCCTGCGGGTCTTTAAGCTCGGATA
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATA
98848959 TACATCAAAT
Statistics
Matches: 356, Mismatches: 67, Indels: 8
0.83 0.16 0.02
Matches are distributed among these distances:
78 62 0.17
79 158 0.44
80 136 0.38
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (80 bp):
CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
CGGATACAATTCCAG
Found at i:98848833 original size:158 final size:157
Alignment explanation
Indices: 98848497--98848941 Score: 642
Period size: 158 Copynumber: 2.8 Consensus size: 157
98848487 TACCAGTACG
* * * * * * * * *
98848497 AAGCCTGC-GGACCTTAAGTCCGAATATAGTACCAGCATGAAGCCTACGGATC-TTAAGTCCGGA
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCAT-AAGCCTGCGGGTCTTTAAGCCCGGA
* * * * * *
98848560 TACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGGCCAGATACAATTCCAGCACGAAGCCTGTGG
65 TACAATTCCAGCACGAAGCTTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTG-CG
* *
98848625 GTCTTTAAGCCCGGATACAATTCCAGCACA
128 GACCTTAAGCCCGGATACAATTCCAGCACA
98848655 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGA
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATA-AGCCTGCGGGTCTTTAAGCCCGGA
98848720 TACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGA
65 TACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGA
*
98848785 CCTTAAGTCCGGATACAATTCCAGCACA
130 CCTTAAGCCCGGATACAATTCCAGCACA
* *
98848813 AAGCCTGCGGGTCTTTAAGCCCAGATATAATTCCAGCATAAAGCCTGCGGGTCTTTAAGCCCAGA
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCAT-AAGCCTGCGGGTCTTTAAGCCCGGA
*
98848878 TACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGG
65 TACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGG
98848942 GTCTTTAAGC
Statistics
Matches: 262, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
158 161 0.61
159 69 0.26
160 32 0.12
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (157 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATAAGCCTGCGGGTCTTTAAGCCCGGAT
ACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGAC
CTTAAGCCCGGATACAATTCCAGCACA
Found at i:98848889 original size:119 final size:119
Alignment explanation
Indices: 98848528--98848951 Score: 625
Period size: 119 Copynumber: 3.6 Consensus size: 119
98848518 GAATATAGTA
* * * *
98848528 CCAGCATGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
* *
98848593 GGCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
66 GCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * * * * *
98848647 CCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCTTTA
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTA
* * * * *
98848712 AGCCCGGATACAATTCCAGCACGAAGCTTGC-GGACCTTAAGTCCGGATACAATT
65 AGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
98848766 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
* ** *
98848831 GCCCAGATATAATTCCAGCATAAAGCCTGCGGGTCTTTAAGCCCAGATACAATT
66 GCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*
98848885 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
98848950 GC
66 GC
98848952 TCGGATATAC
Statistics
Matches: 268, Mismatches: 35, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
118 68 0.25
119 133 0.50
120 67 0.25
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (119 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
GCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
Found at i:98850856 original size:40 final size:40
Alignment explanation
Indices: 98850761--98850950 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
98850751 AAATGGTGTT
* * * * * *
98850761 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAAC
* *
98850802 CGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
98850842 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
* * * *
98850882 CGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
* * * *
98850922 CGGGCTAATTCCCAAAGGCAATTGTGCGA
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGA
98850951 ATCACTATAA
Statistics
Matches: 129, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 106 0.82
41 23 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
Found at i:98850963 original size:80 final size:79
Alignment explanation
Indices: 98850761--98850974 Score: 232
Period size: 80 Copynumber: 2.7 Consensus size: 79
98850751 AAATGGTGTT
* * * * *
98850761 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTCAAGTCCCGAAGGCATTCG
98850826 TGCGAGTTACCAAAAC
64 TGCGAGTTACCAAAAC
* * * * *
98850842 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAAGTCCCGAAGGCATTCGT
* * *
98850907 GTGAGTTACTAAATC
65 GCGAGTTACCAAAAC
* * *
98850922 CGGGCTAATTCCCAAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTCAA-GTCCC
98850975 AAAGATAATC
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 4 0.04
80 76 0.69
81 30 0.27
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAAGTCCCGAAGGCATTCGTG
CGAGTTACCAAAAC
Found at i:98858283 original size:25 final size:25
Alignment explanation
Indices: 98858249--98858307 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
98858239 CTACAATATG
*
98858249 TAATTGGCCTCAACATCAACATGCA
1 TAATCGGCCTCAACATCAACATGCA
98858274 TAATCGGCCTCAACATCAACATGCA
1 TAATCGGCCTCAACATCAACATGCA
98858299 TAATCGGCC
1 TAATCGGCC
98858308 ACATGAATGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.34, C:0.31, G:0.14, T:0.22
Consensus pattern (25 bp):
TAATCGGCCTCAACATCAACATGCA
Found at i:98858923 original size:40 final size:40
Alignment explanation
Indices: 98858825--98859014 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
98858815 CAAATGGTGT
* * * * * *
98858825 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAAC
* * * *
98858866 CGGGTCAATTTCTGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
98858906 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
* * *
98858946 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
* * *
98858986 CGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGA
98859015 ATCACTATAA
Statistics
Matches: 128, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 107 0.84
41 21 0.16
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
Found at i:98859027 original size:80 final size:79
Alignment explanation
Indices: 98858825--98859038 Score: 232
Period size: 80 Copynumber: 2.7 Consensus size: 79
98858815 CAAATGGTGT
* * * * * * *
98858825 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTTCTGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTCAAGTCCCGAAGGCATTCG
98858890 TGCGAGTTACCAAAAC
64 TGCGAGTTACCAAAAC
* * * * *
98858906 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAAGTCCCGAAGGCATTCGT
* *
98858971 GCGAGTTACTAAATC
65 GCGAGTTACCAAAAC
* *
98858986 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTCAA-GTCCC
98859039 AAAGATAATC
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 4 0.04
80 76 0.69
81 30 0.27
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAAGTCCCGAAGGCATTCGTG
CGAGTTACCAAAAC
Found at i:98859029 original size:40 final size:39
Alignment explanation
Indices: 98858825--98859038 Score: 207
Period size: 40 Copynumber: 5.3 Consensus size: 39
98858815 CAAATGGTGT
* * *
98858825 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA-C
* * * *
98858866 CGGG-TCAATTTCTGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAAC
* *
98858906 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAAC
* *
98858946 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-C
* * * *
98858986 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
98859026 CGGGC-AATGTCCC
1 CGGGCTAA-GTCCC
98859039 AAAGATAATC
Statistics
Matches: 148, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 6 0.04
40 114 0.77
41 28 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:98859055 original size:80 final size:80
Alignment explanation
Indices: 98858891--98859056 Score: 181
Period size: 80 Copynumber: 2.1 Consensus size: 80
98858881 AGGCATTTGT
* * * * *
98858891 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT
1 GCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGT
* * * *
98858956 CCCGAAGGCATTCGT
66 CCCAAAGACAATCGA
* * * * *
98858971 GCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATG
1 GCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-G
*
98859035 TCCCAAAGATAATCGA
65 TCCCAAAGACAATCGA
98859051 GCGAGT
1 GCGAGT
98859057 CGCTATATCC
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
79 2 0.03
80 68 0.97
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (80 bp):
GCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGT
CCCAAAGACAATCGA
Found at i:98864087 original size:46 final size:47
Alignment explanation
Indices: 98864020--98864186 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 47
98864010 TGTAACCTGC
* *
98864020 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGAG-CGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGAGACGTTCGCAT
* * *
98864066 CCATAAGTTAACTCAGACTCAACTCAACAAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACAAGCTC-GA-GAC--GTTCGCAT
* * * *
98864116 CTCA-CA---AACTCGGACTCAACTCAACAAGTTC-AGACATTCGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACAAGCTCGAGACGTTCGCAT
98864159 CCATAAGTGAACTCAGACTCAACTCAAC
1 CCATAAGTGAACTCAGACTCAACTCAAC
98864187 GAGTTTGGAT
Statistics
Matches: 98, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 2 0.02
45 1 0.01
46 49 0.50
47 25 0.26
48 1 0.01
49 1 0.01
50 5 0.05
51 5 0.05
ACGTcount: A:0.35, C:0.31, G:0.14, T:0.20
Consensus pattern (47 bp):
CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGAGACGTTCGCAT
Found at i:98870417 original size:22 final size:21
Alignment explanation
Indices: 98870382--98870457 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
98870372 AAAAGGTATC
* *
98870382 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
98870403 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
98870426 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
98870445 TGC-AATCATATCT
1 TACAAATCATATCT
98870458 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:98870433 original size:17 final size:19
Alignment explanation
Indices: 98870418--98870540 Score: 186
Period size: 17 Copynumber: 6.8 Consensus size: 19
98870408 AATCATATCT
98870418 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98870437 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98870455 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
98870472 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
98870491 TCAAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98870509 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
98870526 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
98870541 TGAAGATTAT
Statistics
Matches: 94, Mismatches: 4, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
17 32 0.34
18 30 0.32
19 32 0.34
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98870486 original size:54 final size:54
Alignment explanation
Indices: 98870418--98870540 Score: 228
Period size: 54 Copynumber: 2.3 Consensus size: 54
98870408 AATCATATCT
*
98870418 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATA
*
98870472 TCTAAGATTGCATATCATATCAAATATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATA
98870526 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
98870541 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:98870537 original size:35 final size:36
Alignment explanation
Indices: 98870418--98870537 Score: 172
Period size: 35 Copynumber: 3.3 Consensus size: 36
98870408 AATCATATCT
*
98870418 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCA-ATCATATCTAAGATTGCTATCATA
*
98870455 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCAATCATATCTAAGATTGC-TATCATA
* *
98870491 TCAAATATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATATCTAAGATTGCTATCATA
98870526 TCTAAGATTGCA
1 TCTAAGATTGCA
98870538 TATTGAAGAT
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
35 34 0.46
36 14 0.19
37 26 0.35
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGCAATCATATCTAAGATTGCTATCATA
Found at i:98871594 original size:46 final size:48
Alignment explanation
Indices: 98871467--98871682 Score: 209
Period size: 45 Copynumber: 4.6 Consensus size: 48
98871457 GAGAGCCAAC
* * * * * *
98871467 GTAAGACCATGTCTGGGACATGGCATCAG-TATTGAGACGAAAGCTAAT
1 GTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGATGTAAGCCAGT
98871515 GTAAGA-CATGTCTGGG-CAT-GCATCGGCCT-CGAGATGTAAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGATGTAAGCCAGT
* * *
98871560 GTAAGA-CATGTATGGGACAT-GCATCGGCTACGAGATGT-A-TCAGG
1 GTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAAGCCAGT
*
98871604 GTAAGACCATGTCCGGGACATGGCATCGGC-ACAGAGATGTTAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCTAC-GAGATG-TA-AGCCAGT
* *
98871654 ATAAGACCATGTCTAGGACATGGCATCGG
1 GTAAGACCATGTCTGGGACATGGCATCGG
98871683 TATTACAACC
Statistics
Matches: 141, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
44 9 0.06
45 49 0.35
46 35 0.25
47 12 0.09
48 6 0.04
49 1 0.01
50 29 0.21
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.21
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAAGCCAGT
Found at i:98873456 original size:28 final size:28
Alignment explanation
Indices: 98873421--98873487 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
98873411 AAAAAAAATT
* *
98873421 GCACTAAGTGTGCAAG-TCTGATTATTGA
1 GCACTAAGTGTGCAAGCT-TAAGTATTGA
*
98873449 GCACTAAGTGTGCAAGCTTAAGTATTTA
1 GCACTAAGTGTGCAAGCTTAAGTATTGA
98873477 GCACTAAGTGT
1 GCACTAAGTGT
98873488 ACGAATTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGCTTAAGTATTGA
Found at i:98877197 original size:79 final size:80
Alignment explanation
Indices: 98877089--98877280 Score: 212
Period size: 79 Copynumber: 2.4 Consensus size: 80
98877079 GGATATAACG
* ** *
98877089 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGAGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTCG-GATC
* *
98877152 TTAACCCGGGTTTAGTA
64 TTAACCCGGATATAGTA
* * *
98877169 ACTCGCACAAATGCCTTTGGG-CTTAGCCCGGATTTATTAACTTGCACGAACGCCTTCGGATCTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTT
** *
98877233 AGTCCGGATATAGTC
66 AACCCGGATATAGTA
*
98877248 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
98877281 CATCATTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 52 0.55
80 40 0.43
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTT
AACCCGGATATAGTA
Found at i:98877240 original size:40 final size:39
Alignment explanation
Indices: 98877089--98877280 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
98877079 GGATATAACG
* * **
98877089 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTA
1 ACTCGCACGAATGCCTTC-GGACTTAGCCCGGATT-TAGTA
* *
98877129 ACTCGCACGAATGCCTTCGAGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCG-GACTTAGCCCGGATTTAGTA
* * * *
98877169 ACTCGCACAAATGCCTTTGGGCTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGACTTAGCCCGGATTTAGTA
* * * * *
98877208 ACTTGCACGAACGCCTTCGGATCTTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGA-CTTAGCCCGGATTTAGTA
* *
98877248 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTC-GGACTTAGCCCGGA
98877281 CATCATTCAA
Statistics
Matches: 124, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
39 33 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACGAATGCCTTCGGACTTAGCCCGGATTTAGTA
Found at i:98893822 original size:11 final size:11
Alignment explanation
Indices: 98893806--98893832 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98893796 GAACAAACAT
98893806 GTCACACATGG
1 GTCACACATGG
98893817 GTCACACATGG
1 GTCACACATGG
98893828 GTCAC
1 GTCAC
98893833 TTTTCATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (11 bp):
GTCACACATGG
Done.