Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 317 of 438
Found at i:99237726 original size:42 final size:41
Alignment explanation
Indices: 99237639--99237801 Score: 143
Period size: 42 Copynumber: 3.9 Consensus size: 41
99237629 TACCGTACCA
* * * *
99237639 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATTG
1 ATGCCATAACCCA-ATATGGTCTTACACG-AAGTCTCATATAG
* * *
99237681 ATGCCAATAGCCCAACTATGGTCTTACACG-GGTCTCATATCG
1 ATGCC-ATAACCCAA-TATGGTCTTACACGAAGTCTCATATAG
*
99237723 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATAACCCA-ATATGGTCTTACACGAAGTCTCATATAG
** *
99237765 ATTTCATAACCCAAATATGGTATTACACGTAA-TCTCA
1 ATGCCATAACCC-AATATGGTCTTACACG-AAGTCTCA
99237802 GTAACCCTAA
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 21 0.21
42 58 0.57
43 23 0.23
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATAACCCAATATGGTCTTACACGAAGTCTCATATAG
Found at i:99237801 original size:84 final size:84
Alignment explanation
Indices: 99237639--99237801 Score: 204
Period size: 84 Copynumber: 1.9 Consensus size: 84
99237629 TACCGTACCA
* * * * * *
99237639 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTGATGCCAATAGCCCAACTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCCAATAACCCAAATATGGTA
**
99237704 TTACACGGGTCTCATATCG
66 TTACACGAATCTCATATCG
**
99237723 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATAGATTTC-ATAACCCAAATATGGT
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCATATAGATGCCAATAACCCAAATATGGT
99237786 ATTACACGTAATCTCA
65 ATTACACG-AATCTCA
99237802 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 23 0.34
84 44 0.66
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCCAATAACCCAAATATGGTA
TTACACGAATCTCATATCG
Found at i:99249321 original size:12 final size:13
Alignment explanation
Indices: 99249304--99249332 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
99249294 AGATGGACAA
99249304 AATTTGGC-TTTT
1 AATTTGGCTTTTT
99249316 AATTTGGCTTTTT
1 AATTTGGCTTTTT
99249329 AATT
1 AATT
99249333 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:99251612 original size:49 final size:50
Alignment explanation
Indices: 99251530--99251775 Score: 282
Period size: 49 Copynumber: 4.9 Consensus size: 50
99251520 ATCTATTGTG
* *
99251530 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
99251580 -GGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAA-TT
* * * * **
99251630 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
99251680 AGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
99251730 -GGTCGCATGTGTAGTACTAAGTGTAGGCTATTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
99251776 GCGTTGTTTA
Statistics
Matches: 163, Mismatches: 29, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
49 77 0.47
50 50 0.31
51 36 0.22
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:99255776 original size:27 final size:27
Alignment explanation
Indices: 99255717--99255776 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
99255707 ACCCTAATAT
* * *
99255717 TGGTAAAATTATCGAAATACCCTTGTA
1 TGGTAAAATGACCGAAATACCCCTGTA
*
99255744 -GTGTAAAATGACCGTAATACCCCTGTA
1 TG-GTAAAATGACCGAAATACCCCTGTA
99255771 TGGTAA
1 TGGTAA
99255777 TTATGTTTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
26 1 0.04
27 25 0.93
28 1 0.04
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (27 bp):
TGGTAAAATGACCGAAATACCCCTGTA
Found at i:99257931 original size:40 final size:40
Alignment explanation
Indices: 99257872--99258079 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
99257862 CAATTGAATG
* * * *
99257872 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
99257912 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
99257952 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
99257992 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
99258032 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
99258072 ATATCCGG
1 ATATCCGG
99258080 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:99258010 original size:80 final size:80
Alignment explanation
Indices: 99257873--99258079 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
99257863 AATTGAATGA
* * ** * * *
99257873 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
99257938 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
99257951 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
99258016 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
99258033 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
99258080 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:99265805 original size:18 final size:18
Alignment explanation
Indices: 99265758--99265810 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
99265748 GGCCCATTCT
* * *
99265758 AGTAACAGTAAACAGAGT
1 AGTAACAGTAATCAGTGC
99265776 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
99265794 AGTAACAGTAATCAGTG
1 AGTAACAGTAATCAGTG
99265811 TGCAAGTCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (18 bp):
AGTAACAGTAATCAGTGC
Found at i:99266162 original size:27 final size:27
Alignment explanation
Indices: 99266129--99266532 Score: 423
Period size: 27 Copynumber: 15.0 Consensus size: 27
99266119 AAACATACAT
*
99266129 CACATAAGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
99266156 CATATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
99266183 CACATAAAGGCAAAACAGTCTTTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
99266210 CATATAAGGGGAAAATAGTAATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
99266237 CACATAAGGGAAAAATAGTAATATTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
99266264 CACATGAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * * *
99266291 CATATAAGGGCAACATAGTTATTCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
99266318 CACATAAGGGAAAAATAGTCAGTCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
99266345 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
99266372 CTCATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
99266399 CTCATAAGGGCAAAATAGTAATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
99266426 CCCATAAGGGTAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
99266453 CCCATAAAGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
99266480 C-CTATAAAGGCAAAACAATCATTTTAC
1 CAC-ATAAGGGCAAAACAGTCATTTTAC
* * *
99266507 CCCACAAGGGCAAAACAATCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
99266533 TCAATTAAAG
Statistics
Matches: 323, Mismatches: 52, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 321 0.99
28 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:99281281 original size:39 final size:40
Alignment explanation
Indices: 99281191--99281282 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 40
99281181 ATATCGACTT
**
99281191 GCACGAATGCCTTCGGGACTTAACCCGAGTTTAGTAACTT
1 GCACGAATGCCTTCGGGACTTAACCCGAGTTTAGTAACAC
* * *
99281231 GCAC-AAAGCCTTCGGGA-TTAGCCCG-GATTTATTAACAC
1 GCACGAATGCCTTCGGGACTTAACCCGAG-TTTAGTAACAC
99281269 GCACGAATGCCTTC
1 GCACGAATGCCTTC
99281283 AGATCCTAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
37 1 0.02
38 19 0.43
39 20 0.45
40 4 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGAGTTTAGTAACAC
Found at i:99281337 original size:40 final size:39
Alignment explanation
Indices: 99281135--99281337 Score: 135
Period size: 40 Copynumber: 5.1 Consensus size: 39
99281125 CGGAATTTAA
** * * **
99281135 CCGGATATAACAACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAGTAACTTGCACAAA-GCCTTCGGGACTTAGC
* * * *
99281175 CCGGTTATA-TCGACTTGCACGAATGCCTTCGGGACTTAAC
1 CCGGATATAGT-AACTTGCAC-AAAGCCTTCGGGACTTAGC
*
99281215 CC-GAGTTTAGTAACTTGCACAAAGCCTTCGGGA-TTAGC
1 CCGGA-TATAGTAACTTGCACAAAGCCTTCGGGACTTAGC
* * ** * * * *
99281253 CCGGATTTATTAACACGCACGAATGCCTTC-AGATCCTAGT
1 CCGGATATAGTAACTTGCAC-AAAGCCTTCGGGA-CTTAGC
*
99281293 CCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTT-GCACAAAGCCTTCGGGACTTAGC
99281333 CCGGA
1 CCGGA
99281338 CATCATTCGA
Statistics
Matches: 123, Mismatches: 30, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
38 20 0.16
39 23 0.19
40 71 0.58
41 9 0.07
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTAACTTGCACAAAGCCTTCGGGACTTAGC
Found at i:99289431 original size:56 final size:56
Alignment explanation
Indices: 99289335--99289446 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 56
99289325 TGAAAAAAAA
99289335 AAAGAAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
* * ***
99289391 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAAAAAAAATGTGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
99289447 GAAAAGGGGG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
55 2 0.04
56 44 0.90
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (56 bp):
AAAGAAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:99290775 original size:80 final size:79
Alignment explanation
Indices: 99290642--99290792 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
99290632 AAATTGAATG
*
99290642 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
99290707 TTGTGCTAATGGCT
66 TTGTGCTAATGGCT
* ** *
99290721 ATATCCGGGCTAAGGCCCGAAGGC-ATTCATGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAA-GCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
99290784 CATTTGTGC
63 CAATTGTGC
99290793 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 17 0.27
80 46 0.73
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAATGGCT
Found at i:99290806 original size:40 final size:40
Alignment explanation
Indices: 99290642--99290808 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
99290632 AAATTGAATG
* **
99290642 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGC-GAGTGATT
* * * * **
99290681 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAATGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTGATT
* *
99290721 ATATCCGGGCTAAGGCCCGAAGGC-ATTCATGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCGAGTGATT
* * *
99290761 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGA-GTGATT
99290801 ATATCCGG
1 ATATCCGG
99290809 TTATATTCCG
Statistics
Matches: 100, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
39 17 0.17
40 81 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTGATT
Found at i:99293350 original size:23 final size:23
Alignment explanation
Indices: 99293315--99293369 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 23
99293305 TTTGGCCTCC
99293315 TTCTCTAGGTTCGATTTTTGGTAA
1 TTCT-TAGGTTCGATTTTTGGTAA
99293339 TTCTTAGGTTCGATTTTTGGTAA
1 TTCTTAGGTTCGATTTTTGGTAA
99293362 TTCTTAGG
1 TTCTTAGG
99293370 CCAAAAGGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 27 0.87
24 4 0.13
ACGTcount: A:0.16, C:0.11, G:0.22, T:0.51
Consensus pattern (23 bp):
TTCTTAGGTTCGATTTTTGGTAA
Found at i:99297651 original size:13 final size:13
Alignment explanation
Indices: 99297633--99297659 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99297623 GAAGTAATCG
99297633 CACACGGGCGTGT
1 CACACGGGCGTGT
99297646 CACACGGGCGTGT
1 CACACGGGCGTGT
99297659 C
1 C
99297660 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:99303622 original size:37 final size:37
Alignment explanation
Indices: 99303565--99303667 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
99303555 GAATAGTCCC
*
99303565 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
99303602 CCACACGTAGTCATCAGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
99303639 CTACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
99303668 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:99304136 original size:48 final size:48
Alignment explanation
Indices: 99303808--99304133 Score: 571
Period size: 48 Copynumber: 6.8 Consensus size: 48
99303798 ATATACACAC
* * * * *
99303808 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACGTACACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
*
99303856 ATCTCATACATAGTTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
99303904 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
* *
99303952 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCGCATATACTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
99304000 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
*
99304048 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
99304096 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
99304134 ACACACATAT
Statistics
Matches: 266, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 266 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
Found at i:99310454 original size:29 final size:29
Alignment explanation
Indices: 99310324--99310455 Score: 158
Period size: 29 Copynumber: 4.6 Consensus size: 29
99310314 GTTGAGAGAT
* * * *
99310324 TGGCACTGAGTGTGAGAGCATGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
* * *
99310353 TGGCACTGAGTGTGCAAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
99310382 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
* *
99310411 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
99310440 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99310456 CGGCTGATTA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 5 0.05
29 89 0.95
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:99310454 original size:58 final size:58
Alignment explanation
Indices: 99310324--99310455 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
99310314 GTTGAGAGAT
* * * *
99310324 TGGCACTGAGTGTGAGAGCATGAAATGCATGGCACTGAGTGTGCAAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCATGAAATGCATGGCACTAAGTGTGCAAGCTTGAAATACA
* * * *
99310382 TGGCACTAAGTGTGCGAGCTTGAAATGCATGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCATGAAATGCATGGCACTAAGTGTGCAAGCTTGAAA-TACA
99310440 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99310456 CGGCTGATTA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
57 5 0.08
58 60 0.92
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCATGAAATGCATGGCACTAAGTGTGCAAGCTTGAAATACA
Found at i:99318466 original size:29 final size:29
Alignment explanation
Indices: 99318426--99318528 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
99318416 GTTGAGAGAT
*
99318426 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
99318455 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
99318484 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
99318513 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99318529 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:99320651 original size:43 final size:42
Alignment explanation
Indices: 99320480--99320639 Score: 173
Period size: 43 Copynumber: 3.8 Consensus size: 42
99320470 ATATATCGTA
* * *
99320480 CAATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTCATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATAT
* * *
99320523 CAATGTC-ACTATCCCAGACAG-GGTCTTACACGAATCAAATA-
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAATCACATAT
* * * *
99320564 CGATGCCGATGTCCCAGACATGGTCTTACACGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATAT
99320607 CAATGCCAACGTCCCAGACGTGGTCTTACACGA
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGA
99320640 GAACGCATAT
Statistics
Matches: 95, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
41 24 0.25
42 18 0.19
43 52 0.55
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATAT
Found at i:99331721 original size:14 final size:15
Alignment explanation
Indices: 99331702--99331730 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99331692 TCATGAAAGT
99331702 TTCACACAT-ATAAA
1 TTCACACATAATAAA
99331716 TTCACACATAATAAA
1 TTCACACATAATAAA
99331731 GACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:99334198 original size:75 final size:75
Alignment explanation
Indices: 99334075--99334224 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
99334065 ATCTACTTCT
99334075 GGAATTGGTCTTTCTGAGTCTATATAAACAAATTAAATTATTAATTCATCACATTCTTCAATTTT
1 GGAATTGGTCTTTCTGAGTCTATATAAACAAATTAAATTATTAATTCATCACATTCTTCAATTTT
99334140 AGCCCGAAAA
66 AGCCCGAAAA
99334150 GGAATTGGTCTTTCTGAGTCTATATAAACAAATTAAATTATTAATTCATCACATTCTTCAATTTT
1 GGAATTGGTCTTTCTGAGTCTATATAAACAAATTAAATTATTAATTCATCACATTCTTCAATTTT
99334215 AGCCCGAAAA
66 AGCCCGAAAA
99334225 CTTACTCTAT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (75 bp):
GGAATTGGTCTTTCTGAGTCTATATAAACAAATTAAATTATTAATTCATCACATTCTTCAATTTT
AGCCCGAAAA
Found at i:99338754 original size:30 final size:30
Alignment explanation
Indices: 99338699--99338829 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
99338689 ATAGTGAATC
*
99338699 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
99338728 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
99338758 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
99338786 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
99338816 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99338830 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:99338809 original size:58 final size:58
Alignment explanation
Indices: 99338698--99338829 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
99338688 TATAGTGAAT
* * * * *
99338698 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
99338757 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
99338815 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
99338830 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:99346713 original size:30 final size:30
Alignment explanation
Indices: 99346658--99346788 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
99346648 ATAGTGAATC
*
99346658 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
99346687 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
99346717 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
99346745 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
99346775 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99346789 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:99346768 original size:58 final size:58
Alignment explanation
Indices: 99346657--99346788 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
99346647 TATAGTGAAT
* * * * *
99346657 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
99346716 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
99346774 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
99346789 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:99351162 original size:42 final size:41
Alignment explanation
Indices: 99351098--99351189 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 41
99351088 TAGCTCGAAG
*
99351098 GCCCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAAA
1 GCCCTTCGAAACTAAGTCCGGTTATGAGCACTGGCT-T-AAAA
* *
99351140 GCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTTAAAA
1 GCCCTTCGAAACTAAGTCCGGTTATGAGCACTGGCTTAAAA
99351181 GCCCTTCGA
1 GCCCTTCGA
99351190 GACCAAGCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 13 0.28
42 25 0.54
43 8 0.17
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
GCCCTTCGAAACTAAGTCCGGTTATGAGCACTGGCTTAAAA
Found at i:99359848 original size:47 final size:48
Alignment explanation
Indices: 99359778--99359908 Score: 167
Period size: 47 Copynumber: 2.8 Consensus size: 48
99359768 CTCAATCGAT
* * *
99359778 AAGTACCTATACCATGGCTCGTAGCCAAATGAAGGTAACTTATC-CCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* * **
99359825 AAGTACCTATACCATCGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* *
99359873 AA-TACCTATACCATGGCCCATAGCTAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
99359909 TTATTCGCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 70 0.96
48 3 0.04
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
Found at i:99368069 original size:17 final size:18
Alignment explanation
Indices: 99368042--99368075 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
99368032 CTCATACAAA
99368042 ATTTTTCAAAAATTAAAC
1 ATTTTTCAAAAATTAAAC
*
99368060 ATTTTT-AAAAGTTAAA
1 ATTTTTCAAAAATTAAA
99368076 GAGGTTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTTTTCAAAAATTAAAC
Found at i:99369431 original size:42 final size:42
Alignment explanation
Indices: 99369318--99369436 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
99369308 CGGAAAGCTC
* * * *
99369318 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
* * * *
99369360 ATATCAATGCCATTGTTCCAGATAGGGTCTTACACGAAATCAA
1 ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
* *
99369403 ATACGATGCCAATGTCCCAAACATGGTCTTACAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACAC
99369437 ATAAAACATA
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:99376099 original size:15 final size:15
Alignment explanation
Indices: 99376067--99376095 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99376057 ATTTTATGTG
99376067 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
99376082 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
99376096 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:99389539 original size:18 final size:18
Alignment explanation
Indices: 99389516--99389551 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
99389506 CAACTCAAGG
99389516 AACTCATTTCTCTTCTGA
1 AACTCATTTCTCTTCTGA
99389534 AACTCATTTCTCTTCTGA
1 AACTCATTTCTCTTCTGA
99389552 TCCATGAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.06, T:0.44
Consensus pattern (18 bp):
AACTCATTTCTCTTCTGA
Found at i:99398432 original size:107 final size:106
Alignment explanation
Indices: 99398241--99398433 Score: 235
Period size: 107 Copynumber: 1.8 Consensus size: 106
99398231 AATGTAAAAC
* * * * * *
99398241 CATAGCTGGGCTATGGCATTTTAGTGAAAGACCATAACTAGGTTATGGCACCATGTGCGTAAGAC
1 CATAGCTGGGCTATGGCATCTGAGAGAAAGACCATAACTAGGTAATGGCACCACGAGCGTAAGAC
**
99398306 CATGGTTGGACCATAGCAATACATATAAAACTGTGTAAGAG
66 CATGGCAGGACCATAGCAATACATATAAAACTGTGTAAGAG
* * * *
99398347 CATAGCTGGGCTATGGCATCCTGA-AGATAAGACCATAATTGGGTAATGGCACTACGAGTGTAAG
1 CATAGCTGGGCTATGGCAT-CTGAGAGA-AAGACCATAACTAGGTAATGGCACCACGAGCGTAAG
* *
99398411 ACCATGGCAGGGCCATGGCAATA
64 ACCATGGCAGGACCATAGCAATA
99398434 TTTGTGTGAG
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
106 21 0.30
107 50 0.70
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (106 bp):
CATAGCTGGGCTATGGCATCTGAGAGAAAGACCATAACTAGGTAATGGCACCACGAGCGTAAGAC
CATGGCAGGACCATAGCAATACATATAAAACTGTGTAAGAG
Found at i:99399413 original size:21 final size:22
Alignment explanation
Indices: 99399390--99399430 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
99399380 TTTGCTCCTA
99399390 AAAATATT-TTGAGT-TTTGGG
1 AAAATATTCTTGAGTGTTTGGG
*
99399410 AAAATTTTCTTGAGTGTTTGG
1 AAAATATTCTTGAGTGTTTGG
99399431 TTTAGTCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.27, C:0.02, G:0.24, T:0.46
Consensus pattern (22 bp):
AAAATATTCTTGAGTGTTTGGG
Found at i:99408811 original size:40 final size:40
Alignment explanation
Indices: 99408766--99408933 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
99408756 CGGAATATAA
99408766 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
99408806 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
99408846 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * * *
99408886 CCGGATATAATTTCCAGCATAATTGTCTTTGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99408926 CCGGATAT
1 CCGGATAT
99408934 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99417979 original size:42 final size:44
Alignment explanation
Indices: 99417871--99418027 Score: 162
Period size: 43 Copynumber: 3.6 Consensus size: 44
99417861 AGCTCGTACA
* ** * *
99417871 ATGCCAACGTCCCAGATGTGGTCTTACATGT-AATCA-AATATTG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
* * *
99417914 ATG-CAACTATCCCAGACAGGGTCTTACACG-AAATCATATA-CG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGTAAATCACAAATCG
** *
99417956 ATGCCAATGTCCTAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCG
99418000 ATGCCAACATCCCAGACATGGTCTTACA
1 ATGCCAACATCCCAGACATGGTCTTACA
99418028 TGATAACACA
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
42 27 0.29
43 37 0.40
44 28 0.30
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCG
Found at i:99418014 original size:86 final size:85
Alignment explanation
Indices: 99417871--99418027 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
99417861 AGCTCGTACA
** * *
99417871 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATTGATGCAACTATCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCAACTATCCCAGACAGGGT
99417936 CTTACACGAAATCATATACG
66 CTTACACGAAATCATATACG
* * *
99417956 ATGCCAATGTCCTAGACATGGTCTTACACGTAAATCACAA-ATCGATGCCAAC-ATCCCAGACAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATG-CAACTATCCCAGACAG
99418019 GGTCTTACA
63 GGTCTTACA
99418028 TGATAACACA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 26 0.42
86 30 0.48
87 6 0.10
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCAACTATCCCAGACAGGGT
CTTACACGAAATCATATACG
Found at i:99422120 original size:23 final size:23
Alignment explanation
Indices: 99421995--99422129 Score: 98
Period size: 23 Copynumber: 5.8 Consensus size: 23
99421985 AAGGGATATA
* * *
99421995 TATATATGGTTGTGTTTGGATGG
1 TATATTTGGTTATGTTTGGAAGG
* * *
99422018 TATACTTGGTTGTGTTCGG-AGG
1 TATATTTGGTTATGTTTGGAAGG
* *
99422040 TTATATATAAGGTTATGTTTGGAGGG
1 -TATAT-T-TGGTTATGTTTGGAAGG
99422066 TATATTTGG-T-TGTATT-GAAGGG
1 TATATTTGGTTATGT-TTGGAA-GG
* *
99422088 TATGTTTGGTTATGTTTGGAAGA
1 TATATTTGGTTATGTTTGGAAGG
*
99422111 TATTTTTGGTTATGTTTGG
1 TATATTTGGTTATGTTTGG
99422130 TGGGTGATAG
Statistics
Matches: 89, Mismatches: 14, Indels: 18
0.74 0.12 0.15
Matches are distributed among these distances:
21 5 0.06
22 15 0.17
23 44 0.49
24 8 0.09
25 15 0.17
26 2 0.02
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.47
Consensus pattern (23 bp):
TATATTTGGTTATGTTTGGAAGG
Found at i:99432400 original size:22 final size:21
Alignment explanation
Indices: 99432375--99432427 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 21
99432365 GAAATTGGTT
99432375 ATATATATTGCACTTAT-ATATA
1 ATATATATTG--CTTATAATATA
99432397 ATATAT-TGTGCTTATAGATATA
1 ATATATAT-TGCTTATA-ATATA
99432419 ATATATATT
1 ATATATATT
99432428 ATTAGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 5 0.19
21 1 0.04
22 20 0.74
23 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.47
Consensus pattern (21 bp):
ATATATATTGCTTATAATATA
Found at i:99432402 original size:20 final size:21
Alignment explanation
Indices: 99432377--99432424 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
99432367 AATTGGTTAT
99432377 ATATATTGCACTTAT-ATATA
1 ATATATTGCACTTATAATATA
**
99432397 ATATATTGTGCTTATAGATATA
1 ATATATTGCACTTATA-ATATA
99432419 ATATAT
1 ATATAT
99432425 ATTATTAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
22 11 0.46
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (21 bp):
ATATATTGCACTTATAATATA
Found at i:99434313 original size:17 final size:17
Alignment explanation
Indices: 99434288--99434320 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
99434278 GGATAGAAAT
*
99434288 AAATTAATAATGAAAAG
1 AAATAAATAATGAAAAG
99434305 AAATAAATAATGAAAA
1 AAATAAATAATGAAAA
99434321 AACAAACGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (17 bp):
AAATAAATAATGAAAAG
Found at i:99436051 original size:48 final size:48
Alignment explanation
Indices: 99435976--99436155 Score: 140
Period size: 48 Copynumber: 3.8 Consensus size: 48
99435966 CACATAATAG
* * * *
99435976 GATGCCAATGATATATCCTAGATATGGTCTTACATGGGATCAAATATC
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCAAATATC
*
99436024 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATACATATC
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCA-A-ATATC
* * * ** *
99436074 GAAGCC---GACA-G-CCCAG-CTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGACATGTCCCAGAC-ATGGTCTTACATG-GGATCAAATATC
* * * *
99436117 GATGCCAATGCCATGTCCTAGACATGGACATACATGGGA
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGA
99436156 CCACACATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 22
0.71 0.13 0.15
Matches are distributed among these distances:
43 9 0.09
44 1 0.01
45 19 0.19
46 5 0.05
47 5 0.05
48 51 0.50
49 2 0.02
50 10 0.10
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCAAATATC
Found at i:99446088 original size:53 final size:53
Alignment explanation
Indices: 99445906--99446109 Score: 192
Period size: 53 Copynumber: 3.8 Consensus size: 53
99445896 ATTAGGGTTT
* * * * * * *
99445906 AAGGATACCAAGTAAGACCATACCAAGGCATGGCATTGGTAAGTTTTACAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
99445960 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TCATAAGGC
* * * *
99446015 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
99446068 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAA
99446110 TTTTAAAAAG
Statistics
Matches: 119, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 43 0.36
54 36 0.30
55 40 0.34
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:99452836 original size:20 final size:19
Alignment explanation
Indices: 99452808--99452883 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 19
99452798 CTTACAGAAC
*
99452808 ATACTAAAATTTCTAAAGG
1 ATACCAAAATTTCTAAAGG
* *
99452827 TATACCAAAATATCTGAAGAG
1 -ATACCAAAATTTCTAAAG-G
*
99452848 ATATCAAAATTTCTAAAGGG
1 ATACCAAAATTTCTAAA-GG
*
99452868 GTACCAAAATTTCTAA
1 ATACCAAAATTTCTAA
99452884 CATATACCTA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (19 bp):
ATACCAAAATTTCTAAAGG
Found at i:99454137 original size:28 final size:28
Alignment explanation
Indices: 99454096--99454173 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
99454086 CTTGTATATA
* * * *
99454096 GCCCATTAGACCCAATCACGTTTATGA-G
1 GCCCATTAGGCCCAATCACATTCA-AACG
99454124 GCCCATTAGGCCCAAATCACATTCAAACG
1 GCCCATTAGGCCC-AATCACATTCAAACG
*
99454153 G-CCATTAGGCCCAATCGCATT
1 GCCCATTAGGCCCAATCACATT
99454174 TACAATTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 8 0.19
28 24 0.56
29 11 0.26
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCAAACG
Found at i:99454416 original size:16 final size:16
Alignment explanation
Indices: 99454393--99454434 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
99454383 CCAAACTTTT
99454393 GACTTTTCGGCATTTC
1 GACTTTTCGGCATTTC
* **
99454409 GGCTTTTCGATATTTC
1 GACTTTTCGGCATTTC
99454425 GACTTTTCGG
1 GACTTTTCGG
99454435 GATCTGCCGA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.45
Consensus pattern (16 bp):
GACTTTTCGGCATTTC
Found at i:99460487 original size:17 final size:17
Alignment explanation
Indices: 99460465--99460503 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
99460455 ATAACAATTT
99460465 AAATAGGTCTAAGAATA
1 AAATAGGTCTAAGAATA
99460482 AAATAGGTCTAAGAATA
1 AAATAGGTCTAAGAATA
99460499 AAATA
1 AAATA
99460504 ACTTACTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.23
Consensus pattern (17 bp):
AAATAGGTCTAAGAATA
Found at i:99464685 original size:17 final size:18
Alignment explanation
Indices: 99464659--99464705 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
99464649 GATTTAGGTT
* *
99464659 GTGTGGGCCACATGGA-A
1 GTGTGAGCCACACGGACA
99464676 GTGTGAGCCACACGGACA
1 GTGTGAGCCACACGGACA
*
99464694 -TGTGAGCGACAC
1 GTGTGAGCCACAC
99464706 AAGCATGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 25 0.96
18 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (18 bp):
GTGTGAGCCACACGGACA
Found at i:99466198 original size:17 final size:17
Alignment explanation
Indices: 99466164--99466202 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
99466154 AGTAGAGTAT
* *
99466164 ACTGAAACTGTAGTAAA
1 ACTGAAACTATAGCAAA
*
99466181 ACTGAGACTATAGCAAA
1 ACTGAAACTATAGCAAA
99466198 ACTGA
1 ACTGA
99466203 TAGAGATTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (17 bp):
ACTGAAACTATAGCAAA
Found at i:99484056 original size:54 final size:54
Alignment explanation
Indices: 99483968--99484080 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
99483958 CATGGCTGCC
* * *
99483968 AGAACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCCACT
1 AGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCAAT
* * * *
99484021 AGAATAGATATCTGTGGCATAGCCACCAGAAACAGATATTTGTGGCATAGCCAAT
1 AGAACAGATAT-TGTGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCAAT
99484076 AGAAC
1 AGAAC
99484081 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
53 10 0.20
54 22 0.44
55 18 0.36
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (54 bp):
AGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCAAT
Found at i:99484066 original size:28 final size:26
Alignment explanation
Indices: 99483966--99484073 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
99483956 AGCATGGCTG
* *
99483966 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
99483992 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* * *
99484019 CTAGAATAGATATCTGTGGCATAGCCA
1 CCAGAACAGATAT-TGTGGCAGAGCCA
*
99484046 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
99484074 ATAGAACGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
26 12 0.17
27 38 0.54
28 20 0.28
29 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:99487470 original size:15 final size:15
Alignment explanation
Indices: 99487450--99487479 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
99487440 TACAAACTGT
*
99487450 CTCTAATTTAGGAAA
1 CTCTAAGTTAGGAAA
99487465 CTCTAAGTTAGGAAA
1 CTCTAAGTTAGGAAA
99487480 GATACTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (15 bp):
CTCTAAGTTAGGAAA
Found at i:99489867 original size:26 final size:26
Alignment explanation
Indices: 99489838--99489887 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
99489828 GAATGGAGGA
99489838 GATAGGCTTAAAATGGGGAAAGTGCT
1 GATAGGCTTAAAATGGGGAAAGTGCT
99489864 GATAGGCTTAAAATGGGGAAAGTG
1 GATAGGCTTAAAATGGGGAAAGTG
99489888 TTGCAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.22
Consensus pattern (26 bp):
GATAGGCTTAAAATGGGGAAAGTGCT
Found at i:99492045 original size:29 final size:29
Alignment explanation
Indices: 99492013--99492147 Score: 252
Period size: 29 Copynumber: 4.7 Consensus size: 29
99492003 GCTTGGAAGG
*
99492013 TATGACACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
99492042 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
99492071 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
99492100 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
99492129 TATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
99492148 GATCGTTTAT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 103 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:99495925 original size:40 final size:40
Alignment explanation
Indices: 99495861--99496051 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
99495851 GCTACTCGTT
* * * ***
99495861 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
99495901 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
99495941 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
99495980 CCATTGCCTTCGGG-CTTAGTCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
99496019 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
99496052 TTCGCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:99495978 original size:39 final size:39
Alignment explanation
Indices: 99495897--99496059 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
99495887 TATGGTAACC
* *
99495897 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
99495937 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
99495976 CGCACCATTGCCTTCGGGCTTAGTCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
99496015 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
99496054 CGCACA
1 CGCACA
99496060 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:99498687 original size:47 final size:47
Alignment explanation
Indices: 99498617--99499291 Score: 1068
Period size: 47 Copynumber: 14.4 Consensus size: 47
99498607 CCCTTCGGGA
* *
99498617 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * * *
99498664 CTTATCACATATATCCACCTTCACATCCATCACGTCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
99498711 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
99498758 CTTATCTCATATATACACTTTCACATTCACCACCTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
99498805 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
99498852 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
99498899 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
99498946 CTTATCACATATATACACCTTT-ACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACA-CTTTCACATTCATCACATTGGCCATTCGGC
99498993 CTTATCACATATATACACCTTT-ACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-CTTTCACATTCATCACATTGGCCATTCGGC
*
99499040 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
99499087 CTTATCACATATATACAC-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
99499133 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
99499180 CTTATCACATATATACACTTTCACATTCATCACATTGCCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
99499227 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
99499274 CTTATCACATATACACAC
1 CTTATCACATATATACAC
99499292 CTTGTACATC
Statistics
Matches: 589, Mismatches: 36, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
46 50 0.08
47 535 0.91
48 4 0.01
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:99498908 original size:22 final size:22
Alignment explanation
Indices: 99498880--99498955 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
99498870 CTTCACATTC
99498880 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
99498902 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
99498926 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
99498949 ATCACAT
1 ATCACAT
99498956 ATATACACCT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:99502938 original size:40 final size:40
Alignment explanation
Indices: 99502878--99503216 Score: 597
Period size: 40 Copynumber: 8.5 Consensus size: 40
99502868 CCTTCGAGGT
* * * *
99502878 TTAGCCTGGATATATCACTAGCACGAATACTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99502918 TTAGCCCGTATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99502958 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99502998 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
**
99503038 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCAAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99503078 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99503118 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99503158 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99503198 ATAGCCCGGATACATTACT
1 TTAGCCCGGATACATTACT
99503217 CTCAATTCTC
Statistics
Matches: 288, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 288 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
Found at i:99504932 original size:47 final size:47
Alignment explanation
Indices: 99504869--99505683 Score: 1301
Period size: 47 Copynumber: 17.4 Consensus size: 47
99504859 CCCTTCGGGA
* * *
99504869 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * * * *
99504916 CTTATCACATATATACACCTTCACATCCATCACGTCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * *
99504963 CTTATCTCATATATACACTTTCACATACATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * * *
99505010 CTTGTCACATATATATACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99505057 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * *
99505104 CGTATCACATTTATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99505151 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
99505198 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99505245 CTTATCACATATATACACTTTCACATTCATCATGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99505292 CTT-TCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99505338 CTTATCACATATATACACCTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99505385 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99505432 CTTATCACATATATACACCTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99505479 CTTATCACCTATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99505525 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCTGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99505572 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99505619 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99505666 CTTATCACATATACACAC
1 CTTATCACATATATACAC
99505684 CTTGTACATC
Statistics
Matches: 717, Mismatches: 49, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 89 0.12
47 628 0.88
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
Found at i:99505388 original size:187 final size:188
Alignment explanation
Indices: 99504869--99505683 Score: 1328
Period size: 187 Copynumber: 4.3 Consensus size: 188
99504859 CCCTTCGGGA
* *
99504869 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * * * * * * * *
99504934 CTTCACATCCATCACGTCGGCCATTAGGTCTTATCTCATATATACACTTTCACATACATCACATT
66 TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACATT
* *
99504999 GGCCATTCGGCCTTGTCACATATATATACCTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
* * *
99505057 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCGTATCACATTTATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
99505122 TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACATT
66 TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACATT
* *
99505187 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
131 GGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
**
99505245 CTTATCACATATATACACTTTCACATTCATCATGTTGGCCATTCGGCCTT-TCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
99505309 TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACGTT
66 TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACATT
*
99505374 GGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
* * *
99505432 CTTATCACATATATACACCTTCACATTCATCACGTTGGCCATTCGGCCTTATCACCTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
99505497 -TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATT
66 TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACATT
* * * *
99505561 GGCCATTCTGCCTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
131 GGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
*
99505619 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
99505684 CTTGTACATC
Statistics
Matches: 584, Mismatches: 42, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
187 355 0.61
188 229 0.39
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACCTTCACATTCATCACATT
GGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
Found at i:99505486 original size:22 final size:22
Alignment explanation
Indices: 99505460--99505532 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
99505450 CTTCACATTC
99505460 ATCACGTTGGCCATTCGGCCTT
1 ATCACGTTGGCCATTCGGCCTT
* *** * *
99505482 ATCACCTATATACACTTC-ACATT
1 ATCACGT-TGGCCA-TTCGGCCTT
99505505 CATCACGTTGGCCATTCGGCCTT
1 -ATCACGTTGGCCATTCGGCCTT
99505528 ATCAC
1 ATCAC
99505533 ATATATACAC
Statistics
Matches: 35, Mismatches: 12, Indels: 8
0.64 0.22 0.15
Matches are distributed among these distances:
22 14 0.40
23 12 0.34
24 9 0.26
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.32
Consensus pattern (22 bp):
ATCACGTTGGCCATTCGGCCTT
Found at i:99505686 original size:234 final size:234
Alignment explanation
Indices: 99504869--99505686 Score: 1359
Period size: 234 Copynumber: 3.5 Consensus size: 234
99504859 CCCTTCGGGA
* * * *
99504869 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
* * * * * * * * *
99504934 CTTCACATCCATCACGTCGGCCATTAGGTCTTATCTCATATATACACTTTCACATACATCACATT
66 CTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACGTT
* * *
99504999 GGCCATTCGGCCTTGTCACATATATATACCTTCACATTCATCACATTGGCCATTCGGCCTTATCA
131 GGCCATTCGGCCTTATCACATATATACA-CTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
*
99505064 CATATATACACCTTCACATTCATCACATTGGCCATTCGGC
195 CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
99505104 CGTATCACATTTATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
*
99505169 CTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTT
66 CTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACGTT
*
99505234 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCATGTTGGCCATTCGGCCTT-TCA
131 GGCCATTCGGCCTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGCCTTATCA
* *
99505298 CATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
195 CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
99505338 CTTATCACATATATACACCTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
99505403 CTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACGTT
66 CTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACGTT
*
99505468 GGCCATTCGGCCTTATCACCTATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCAC
131 GGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCAC
*
99505533 ATATATACACTTTCACATTCATCACATTGGCCATTCTGC
196 ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
99505572 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
* *
99505637 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACCTT
66 CTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTT
99505687 GTACATCAAT
Statistics
Matches: 550, Mismatches: 31, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
233 30 0.05
234 347 0.63
235 173 0.31
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (234 bp):
CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
CTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACGTT
GGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCAC
ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:99509331 original size:40 final size:40
Alignment explanation
Indices: 99509271--99509567 Score: 508
Period size: 40 Copynumber: 7.5 Consensus size: 40
99509261 CCTTCGAGGT
* * * *
99509271 TTAGCCTGGATATATCACTAGCACGAATACTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99509311 TTAGCCCGTATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99509351 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99509391 TTAGCCCGGATACATTACTAGCACAAATGCTCTTC--AAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99509429 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99509469 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99509509 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99509549 ATAGCCCGGATACATTACT
1 TTAGCCCGGATACATTACT
99509568 CTCAATTCTC
Statistics
Matches: 245, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
38 37 0.15
40 208 0.85
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
Found at i:99509559 original size:158 final size:158
Alignment explanation
Indices: 99509271--99509567 Score: 531
Period size: 158 Copynumber: 1.9 Consensus size: 158
99509261 CCTTCGAGGT
* * * *
99509271 TTAGCCTGGATATATCACTAGCACGAATACTCTTCGGAACTTAGCCCGTATACATTACTAGCACG
1 TTAGCCCGGATACATCACTAGCACGAATACTCTTCGAAACTTAGCCCGGATACATTACTAGCACG
*
99509336 AATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGA
66 AATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAACATAGCCCGGA
99509401 TACATTACTAGCACAAATGCTCTTCAAC
131 TACATTACTAGCACAAATGCTCTTCAAC
* *
99509429 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAACTTAGCCCGGATACATTACTAGCACG
1 TTAGCCCGGATACATCACTAGCACGAATACTCTTCGAAACTTAGCCCGGATACATTACTAGCACG
99509494 AATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAACATAGCCCGGA
66 AATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAACATAGCCCGGA
99509559 TACATTACT
131 TACATTACT
99509568 CTCAATTCTC
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 132 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (158 bp):
TTAGCCCGGATACATCACTAGCACGAATACTCTTCGAAACTTAGCCCGGATACATTACTAGCACG
AATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAACATAGCCCGGA
TACATTACTAGCACAAATGCTCTTCAAC
Found at i:99511277 original size:47 final size:47
Alignment explanation
Indices: 99511214--99512026 Score: 1301
Period size: 47 Copynumber: 17.4 Consensus size: 47
99511204 CCCTTCGGGA
* * *
99511214 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * * * *
99511261 CTTATCACATATATACACCTTCACATCCATCACGTCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * *
99511308 CTTATCTCATATATACACTTTCACATACATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * * *
99511355 CTTGTCACATATATATACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99511402 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* * *
99511449 CGTATCACATTTATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99511496 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
99511543 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99511590 CTTATCACATATATACACTTTCACATTCATCATGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99511637 CTT-TCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99511683 CTTATCACATATATACACCTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99511730 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
99511777 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
99511823 CTTATCAC-TATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
* *
99511868 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCTGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99511915 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99511962 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
*
99512009 CTTATCACATATACACAC
1 CTTATCACATATATACAC
99512027 CTTGTACATC
Statistics
Matches: 716, Mismatches: 47, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
45 45 0.06
46 88 0.12
47 583 0.81
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
Found at i:99515514 original size:28 final size:27
Alignment explanation
Indices: 99515482--99515586 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 27
99515472 CTGACTGATT
*
99515482 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTC-ATTAAAGAAC
* *
99515510 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTC-ATTA-AAGAAC
*
99515539 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCA-TTAAAGAAC
* *
99515567 TTGCACACACAGTGCCTCAT
1 TCGCACACATAGTG-CTCAT
99515587 AACTCCAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
27 2 0.03
28 33 0.52
29 27 0.43
30 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCATTAAAGAAC
Found at i:99515673 original size:40 final size:40
Alignment explanation
Indices: 99515613--99515951 Score: 588
Period size: 40 Copynumber: 8.5 Consensus size: 40
99515603 CCTTCGAGGT
* * * * *
99515613 TTAGCCTGGATATATCACTAGCACGAATACTCTTTGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99515653 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99515693 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99515733 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
* *
99515773 TTAGCCCGGATACATTACTAGCACAAATGCTCTTCGAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99515813 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
99515853 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99515893 TTAGCCCGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
99515933 ATAGCCCGGATACATTACT
1 TTAGCCCGGATACATTACT
99515952 CTCAATTCTC
Statistics
Matches: 287, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 287 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
Found at i:99517785 original size:46 final size:46
Alignment explanation
Indices: 99517605--99518266 Score: 1085
Period size: 46 Copynumber: 14.3 Consensus size: 46
99517595 CCCTTCGGGA
* * * *
99517605 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
* * * *
99517652 CTTATCACATATATACACCTTCACATCCATCACGTCGGCCATTAGGT
1 CTTATCACATATATACA-CTTCACATTCATCACGTTGGCCATTCGGC
* *
99517699 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
*
99517746 CTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
99517792 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
99517838 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
99517884 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
* *
99517930 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGA
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
99517977 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
99518023 CTTATCACATA-ATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
*
99518069 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
* *
99518116 CTTATCACATATATACACTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
*
99518162 CTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
*
99518208 CTTATCACATATATACACTTTCACATTCATCAC-ATGGCCATTCGGC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGC
99518254 CTTATCACATATA
1 CTTATCACATATA
99518267 CACCCTTGTA
Statistics
Matches: 581, Mismatches: 28, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
45 6 0.01
46 368 0.63
47 206 0.35
48 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (46 bp):
CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGC
Found at i:99517857 original size:139 final size:139
Alignment explanation
Indices: 99517605--99518266 Score: 1105
Period size: 139 Copynumber: 4.8 Consensus size: 139
99517595 CCCTTCGGGA
* * * *
99517605 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACAC
* * * * * *
99517670 CTTCACATCCATCACGTCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATT
65 TTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACAC-TTCACATTCATCACATT
99517735 GGCCATTCGGC
129 GGCCATTCGGC
*
99517746 CTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAC-
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
*
99517810 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACGTTGG
66 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACATTGG
99517875 CCATTCGGC
131 CCATTCGGC
99517884 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
* * *
99517949 TTCACATTCATCACGTTGGCCACTCGGACTTATCACATATATACACTTCACATTCATCACGTTGG
66 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACATTGG
99518014 CCATTCGGC
131 CCATTCGGC
99518023 CTTATCACATA-ATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACAC
* *
99518087 TTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACTTCACTTTCATCACATTG
65 TTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACATTG
99518152 GCCATTCGGC
130 GCCATTCGGC
*
99518162 CTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
*
99518227 TTCACATTCATCAC-ATGGCCATTCGGCCTTATCACATATA
66 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATA
99518267 CACCCTTGTA
Statistics
Matches: 498, Mismatches: 20, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
138 120 0.24
139 313 0.63
140 48 0.10
141 17 0.03
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (139 bp):
CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACATTGG
CCATTCGGC
Found at i:99517959 original size:185 final size:186
Alignment explanation
Indices: 99517605--99518266 Score: 1116
Period size: 185 Copynumber: 3.6 Consensus size: 186
99517595 CCCTTCGGGA
* * * *
99517605 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
1 CTTATCACATATATACAC-TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACAC
* * * * * * *
99517670 CTTCACATCCATCACGTCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATT
65 TTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTT
99517735 GGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGC
130 GGCCATTCGGCCTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGC
99517792 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACAC-
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
99517856 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACAC-TTCACATTCATCACGTTG
66 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTTG
*
99517920 GCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGA
131 GCCATTCGGCCTTATCACATATATACAC-TTCACATTCATCACGTTGGCCACTCGGC
99517977 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATA-ATACACT
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
99518041 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTTG
66 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTTG
* * * *
99518106 GCCACTCGGCCTTATCACATATATACACTTCACTTTCATCACATTGGCCATTCGGC
131 GCCATTCGGCCTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGC
*
99518162 CTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
*
99518227 TTCACATTCATCAC-ATGGCCATTCGGCCTTATCACATATA
66 TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATA
99518267 CACCCTTGTA
Statistics
Matches: 453, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
184 51 0.11
185 276 0.61
186 109 0.24
187 17 0.04
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (186 bp):
CTTATCACATATATACACTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACT
TTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTTG
GCCATTCGGCCTTATCACATATATACACTTCACATTCATCACGTTGGCCACTCGGC
Found at i:99522042 original size:40 final size:40
Alignment explanation
Indices: 99521997--99522163 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
99521987 CGGAATATAA
*
99521997 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
99522037 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
99522077 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
99522117 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
99522156 CCGGATAT
1 CCGGATAT
99522164 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99522147 original size:80 final size:79
Alignment explanation
Indices: 99522013--99522163 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
99522003 ATAACCATGT
*
99522013 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
99522078 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
99522093 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
99522156 CCGGATAT
64 CCGGATAT
99522164 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:99524212 original size:28 final size:28
Alignment explanation
Indices: 99524147--99524247 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
99524137 ATAGTGAATC
*
99524147 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
99524176 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
99524204 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
99524234 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99524248 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:99529142 original size:18 final size:18
Alignment explanation
Indices: 99529114--99529177 Score: 101
Period size: 18 Copynumber: 3.5 Consensus size: 18
99529104 AGTTGAGAGA
*
99529114 TGAGAGAATGATGAATAAG
1 TGAG-GAATGATGGATAAG
99529133 TGAGGAATGATGGATAAG
1 TGAGGAATGATGGATAAG
99529151 TGAGGAATGATGGATAAG
1 TGAGGAATGATGGATAAG
*
99529169 TGAGAAATG
1 TGAGGAATG
99529178 GGATCTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
18 39 0.91
19 4 0.09
ACGTcount: A:0.42, C:0.00, G:0.36, T:0.22
Consensus pattern (18 bp):
TGAGGAATGATGGATAAG
Found at i:99537825 original size:80 final size:80
Alignment explanation
Indices: 99537741--99537889 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
99537731 TATGGTAACC
* * * *
99537741 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
99537805 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
99537821 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
99537886 CCGG
66 CCGG
99537890 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:99537831 original size:40 final size:38
Alignment explanation
Indices: 99537782--99537889 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
99537772 ATCACGATTT
*
99537782 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
99537822 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
99537862 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
99537890 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:99545954 original size:79 final size:80
Alignment explanation
Indices: 99545811--99546018 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
99545801 ACCTTCGGAG
* * ** * * * *
99545811 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
99545875 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
99545890 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
99545952 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
99545969 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
99546019 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:99545963 original size:40 final size:40
Alignment explanation
Indices: 99545911--99546018 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
99545901 TATCACGATT
** *
99545911 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
99545951 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
99545991 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
99546019 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:99549696 original size:28 final size:29
Alignment explanation
Indices: 99549645--99549700 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
99549635 TACAGGGGTT
* *
99549645 TTCACACAGCCTGGAACACTCCCGTGTCC
1 TTCACACAGCCAGGAACACGCCCGTGTCC
*
99549674 TTCACACGGCCAGG-ACACGCCCGTGTC
1 TTCACACAGCCAGGAACACGCCCGTGTC
99549701 TTAGTCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.20, C:0.41, G:0.21, T:0.18
Consensus pattern (29 bp):
TTCACACAGCCAGGAACACGCCCGTGTCC
Found at i:99552428 original size:16 final size:16
Alignment explanation
Indices: 99552381--99552428 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
99552371 AAAAAATAAA
*
99552381 TAAATTTAAAATATTT
1 TAAATTTAAAATAATT
** *
99552397 TAAAAATAAAAAAATT
1 TAAATTTAAAATAATT
*
99552413 TAAATTTAACATAATT
1 TAAATTTAAAATAATT
99552429 GAAAATAATG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TAAATTTAAAATAATT
Found at i:99553330 original size:18 final size:19
Alignment explanation
Indices: 99553309--99553350 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
99553299 TTTAAGGTTA
* *
99553309 TTTTAATTT-TTTTAATGC
1 TTTTAATTTGTGTAAATGC
99553327 TTTT-ATTTGTGTAAATGC
1 TTTTAATTTGTGTAAATGC
99553345 TTTTAA
1 TTTTAA
99553351 GGTATTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 15 0.75
19 1 0.05
ACGTcount: A:0.24, C:0.05, G:0.10, T:0.62
Consensus pattern (19 bp):
TTTTAATTTGTGTAAATGC
Found at i:99555839 original size:47 final size:47
Alignment explanation
Indices: 99555783--99555890 Score: 216
Period size: 47 Copynumber: 2.3 Consensus size: 47
99555773 TATACTCAAG
99555783 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
1 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
99555830 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
1 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
99555877 ATAGATAAAATCTA
1 ATAGATAAAATCTA
99555891 TGTGGATTCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.56, C:0.05, G:0.12, T:0.28
Consensus pattern (47 bp):
ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
Found at i:99557096 original size:25 final size:25
Alignment explanation
Indices: 99557068--99557118 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
99557058 TTAAGGAGAT
99557068 GGCATTAAATAATTAGCAGTGGCAA
1 GGCATTAAATAATTAGCAGTGGCAA
99557093 GGCATTAAATAATTAGCAGTGGCAA
1 GGCATTAAATAATTAGCAGTGGCAA
99557118 G
1 G
99557119 TCACAAAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (25 bp):
GGCATTAAATAATTAGCAGTGGCAA
Found at i:99560036 original size:19 final size:18
Alignment explanation
Indices: 99560000--99560038 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
99559990 TGAAATAATT
* *
99560000 TGGAAATGAAAATGGAAA
1 TGGAAAAGAAAAAGGAAA
99560018 TGGAAAAGAAAAAGAGAAA
1 TGGAAAAGAAAAAG-GAAA
99560037 TG
1 TG
99560039 ATTCATTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.13
Consensus pattern (18 bp):
TGGAAAAGAAAAAGGAAA
Found at i:99563381 original size:42 final size:42
Alignment explanation
Indices: 99563317--99563466 Score: 149
Period size: 42 Copynumber: 3.6 Consensus size: 42
99563307 AGATCCCGTA
* * *
99563317 TAAGACCATATCTGGGATATGGCATTGATATAAGATTTTGTG
1 TAAGACCATATCTGGGACATGGCATCGATATAAGATTTCGTG
* * * * * *
99563359 TAAGACCATGTCTAGGACATGGCGTCGAAATAAGAATTCGTA
1 TAAGACCATATCTGGGACATGGCATCGATATAAGATTTCGTG
* * * ** *
99563401 TAAGACCATATCTGGGATATGGCATCGATGTGAGATCCCATG
1 TAAGACCATATCTGGGACATGGCATCGATATAAGATTTCGTG
*
99563443 TAAGA-CATGTCTGGGACATGGCAT
1 TAAGACCATATCTGGGACATGGCAT
99563467 TGGCATCTTA
Statistics
Matches: 85, Mismatches: 23, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
41 17 0.20
42 68 0.80
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTGGGACATGGCATCGATATAAGATTTCGTG
Found at i:99570941 original size:85 final size:85
Alignment explanation
Indices: 99570793--99570966 Score: 312
Period size: 85 Copynumber: 2.0 Consensus size: 85
99570783 TGAATATTCT
* *
99570793 TGATGTTGTTCGATAAAGATTTGAGGTGATAAAAGCCGGTTGGACCTTAGGAATACTTAGGGTAT
1 TGATATTGTTCGATAAAGATTTGAGGTGATAAAAGCCGGTTGGACCTTAGAAATACTTAGGGTAT
99570858 AAAAATTAAGACATTTGGGC
66 AAAAATTAAGACATTTGGGC
*
99570878 TGATATTGTTCGATAAAGATTTGAGGTGATAAAAGTCGGTTGGACCTTAGAAATACTTAGGGTAT
1 TGATATTGTTCGATAAAGATTTGAGGTGATAAAAGCCGGTTGGACCTTAGAAATACTTAGGGTAT
*
99570943 AAAAATTAAGACATTTGGGT
66 AAAAATTAAGACATTTGGGC
99570963 TGAT
1 TGAT
99570967 GAGATCCCGT
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (85 bp):
TGATATTGTTCGATAAAGATTTGAGGTGATAAAAGCCGGTTGGACCTTAGAAATACTTAGGGTAT
AAAAATTAAGACATTTGGGC
Found at i:99571070 original size:42 final size:42
Alignment explanation
Indices: 99570978--99571176 Score: 173
Period size: 42 Copynumber: 4.6 Consensus size: 42
99570968 AGATCCCGTA
* *
99570978 TAAGACCATATCTGGGATATGGCATCGGCATTAGTATGAGTTATCATG
1 TAAGACCATATCTGGGATATGGCATC-G-A-TA-TAAGA-TT-TCGTG
* *
99571026 TAAGACCATATCTGGGATATGGCATTGATATAAGATTTTGTG
1 TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCGTG
* ** * * * *
99571068 TAAGACCATATCTGGGACATGGTGTCGAAATGAGAATTCGTA
1 TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCGTG
* * ** *
99571110 TAAGACCATATCTGGGATATGGCATCGATGTGAGATCCCATG
1 TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCGTG
* * *
99571152 TAAGTCCATGTCTGGGACATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
99571177 TGGCATCCTA
Statistics
Matches: 125, Mismatches: 26, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
42 90 0.72
43 2 0.02
44 4 0.03
45 2 0.02
46 1 0.01
47 1 0.01
48 25 0.20
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCGTG
Found at i:99574266 original size:22 final size:22
Alignment explanation
Indices: 99574241--99574286 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
99574231 ATCTATATGT
*
99574241 ATTCAAAATTAAT-CACCAACAC
1 ATTC-AAATTAATACACAAACAC
*
99574263 ATTCAATTTAATACACAAACAC
1 ATTCAAATTAATACACAAACAC
99574285 AT
1 AT
99574287 CTTTGGGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (22 bp):
ATTCAAATTAATACACAAACAC
Found at i:99576441 original size:12 final size:13
Alignment explanation
Indices: 99576426--99576454 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
99576416 CAAAACTTTC
99576426 ACACATACT-TAA
1 ACACATACTGTAA
99576438 ACACATACTGTAA
1 ACACATACTGTAA
99576451 ACAC
1 ACAC
99576455 GAAAGATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.48, C:0.28, G:0.03, T:0.21
Consensus pattern (13 bp):
ACACATACTGTAA
Found at i:99586030 original size:40 final size:38
Alignment explanation
Indices: 99585974--99586123 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
99585964 TCGAATGATG
* * * *
99585974 TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGACTAATCCCGAAGGCTTTGTGC-AAGTTACTAAA
* * *
99586013 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGACTA--ATCCCGAAGGC-TTTGTGCAAGTTACTAAA
*
99586053 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
1 TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
* ** *
99586091 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGT
1 TCCGGACTAA-TCCCGAAGGC-TTTGTGCAAGT
99586124 CGATATAACC
Statistics
Matches: 91, Mismatches: 14, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
38 25 0.27
39 26 0.29
40 33 0.36
41 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (38 bp):
TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
Found at i:99586136 original size:40 final size:39
Alignment explanation
Indices: 99586026--99586154 Score: 122
Period size: 40 Copynumber: 3.3 Consensus size: 39
99586016 GGACTAGGAT
* * *
99586026 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAA-TC
1 CCGAAGGCATTCGTGCAAG-TAATAAACCCGGGTTAAGTC
* *
99586065 CCGAAGGC-TTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCAAG-TAATAAACCCGGGTTAAGTC
* *
99586104 CCGAAGGCATTCGTGCAAGTCGATATAA-CCGGGCTT-CGTC
1 CCGAAGGCATTCGTGCAAGT-AATA-AACCCGGG-TTAAGTC
99586144 CCGAAGGCATT
1 CCGAAGGCATT
99586155 TGAGCGAGTC
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
38 23 0.30
39 19 0.25
40 30 0.39
41 4 0.05
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCAAGTAATAAACCCGGGTTAAGTC
Found at i:99595490 original size:40 final size:39
Alignment explanation
Indices: 99595363--99595492 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
99595353 ATGCTGGAAA
* *
99595363 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
99595403 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
99595443 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
99595483 TTATATCCGG
1 TTATATCCGG
99595493 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:99595862 original size:14 final size:14
Alignment explanation
Indices: 99595843--99595874 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
99595833 TCTCTGTTTT
99595843 ATAGATTTTGCTCG
1 ATAGATTTTGCTCG
99595857 ATAGATTTTGCTCG
1 ATAGATTTTGCTCG
99595871 ATAG
1 ATAG
99595875 CAATCGGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (14 bp):
ATAGATTTTGCTCG
Found at i:99597367 original size:39 final size:38
Alignment explanation
Indices: 99597321--99597449 Score: 134
Period size: 40 Copynumber: 3.3 Consensus size: 38
99597311 GGACTAGGAT
*
99597321 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAATC
1 CCGAAGGCATTCGTGCAAGTTAATAAA-CCGGGCTAATC
* * *
99597360 CCGAAGGC-TTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCAAGTTAATAAA-CCGGGCTAA-TC
** **
99597399 CCGAAGGCATTCGTGCAAGTCGATATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCAAGTTAATA-AACCGGGC-TAATC
99597439 CCGAAGGCATT
1 CCGAAGGCATT
99597450 TGAGCGAGTC
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
38 23 0.31
39 18 0.24
40 30 0.41
41 3 0.04
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (38 bp):
CCGAAGGCATTCGTGCAAGTTAATAAACCGGGCTAATC
Found at i:99597431 original size:78 final size:79
Alignment explanation
Indices: 99597268--99597451 Score: 194
Period size: 78 Copynumber: 2.3 Consensus size: 79
99597258 TCGAATGATG
* ** *
99597268 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATTCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
99597333 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
99597348 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
*
99597411 GTGCAAGTCGATATAA
65 GTGCAAGTCAATA-AA
**
99597427 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGC-TAATCCCGAAGGC-TTTG
99597452 AGCGAGTCGT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 43 0.49
79 30 0.34
80 14 0.16
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:99603958 original size:66 final size:67
Alignment explanation
Indices: 99603876--99604030 Score: 260
Period size: 66 Copynumber: 2.3 Consensus size: 67
99603866 ATACTATATA
*
99603876 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT-TAGACAAGAGAGCTACGTG-GAGATA
1 GTAGCTAGGTCACATGTGTGATACGCGATGTAT-CCATGTAGACAAGAGAGCTACGTGAGAGATA
99603939 AAT
65 AAT
99603942 GTAGCTAGGTCACATGTGTGATACGCGATGTATCCATGTAGACAAGAGAGCTACGTGAGAGATAA
1 GTAGCTAGGTCACATGTGTGATACGCGATGTATCCATGTAGACAAGAGAGCTACGTGAGAGATAA
99604007 AT
66 AT
* *
99604009 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
99604031 TCCAAGTGAA
Statistics
Matches: 84, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
65 4 0.05
66 51 0.61
67 29 0.35
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.25
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGCGATGTATCCATGTAGACAAGAGAGCTACGTGAGAGATAA
AT
Found at i:99604071 original size:67 final size:64
Alignment explanation
Indices: 99603910--99604094 Score: 189
Period size: 67 Copynumber: 2.8 Consensus size: 64
99603900 GGGATGTATC
* * * * *
99603910 CCAT-TAGACAAGAGAGCTACGTGGAGATAAATGTAGCTAGGTCACATGTGTGATACGCGATGTA
1 CCATGTAGACAAGAGAGCTAC--GGAGATAAATGTAGCTAGGTCGCATGAGTGATAAGCGAAGGA
*
99603974 T
64 A
*
99603975 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATGTAGCTAGGTCGCATGAGTGA-T--AAGCGA
99604040 AGGACA
60 AGGA-A
99604046 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG--GCTAGGTCGCATGAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GTAGCTAGGTCGCATGAGTG
99604095 GTACTAAGTG
Statistics
Matches: 106, Mismatches: 7, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
65 4 0.04
66 36 0.34
67 37 0.35
68 2 0.02
70 6 0.06
71 21 0.20
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (64 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGTAGCTAGGTCGCATGAGTGATAAGCGAAGGAA
Found at i:99604104 original size:66 final size:67
Alignment explanation
Indices: 99603910--99604104 Score: 188
Period size: 66 Copynumber: 2.9 Consensus size: 67
99603900 GGGATGTATC
* * * *
99603910 CCAT-TAGACAAGAGAGCTACGTGGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GCGAT
1 CCATGTAGACAAGAGAGCTAC--GGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGAA
* *
99603971 GTA-T
63 GGACA
*
99603975 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
99604040 AGGACA
62 AGGACA
* *
99604046 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
99604105 TTCACCATGT
Statistics
Matches: 113, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
65 4 0.04
66 43 0.38
67 38 0.34
68 2 0.02
70 5 0.04
71 21 0.19
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:99611465 original size:68 final size:67
Alignment explanation
Indices: 99611419--99611576 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 67
99611409 ATACTATATA
99611419 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
99611484 AAT
65 AAT
99611487 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
99611552 AAT
65 AAT
* *
99611555 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
99611577 TCCAAGTGAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:99611650 original size:66 final size:67
Alignment explanation
Indices: 99611453--99611650 Score: 192
Period size: 68 Copynumber: 2.9 Consensus size: 67
99611443 GGGATGTATC
* * *
99611453 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
99611515 TGTATC-
62 AGGA-CA
*
99611521 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
99611586 AGGACA
62 AGGACA
* *
99611592 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
99611651 TTCAACATGT
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 55 0.47
69 1 0.01
70 1 0.01
71 26 0.22
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:99619527 original size:50 final size:49
Alignment explanation
Indices: 99619276--99619594 Score: 249
Period size: 46 Copynumber: 6.7 Consensus size: 49
99619266 TCATTTGTGG
* * **
99619276 GAGCTAGTGTTAGA-CATGTCTGGGACAT-GCATCGGCCA-C-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGAAGATGA
* * *
99619322 GAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCATTG-AGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
* * * * *
99619370 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCG-GGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
* * *
99619415 TAAGCCAGTATAAGA-CATGTTTGGGACAT-GCATCGGC-TACG-AGAT--
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAAGATGA
* * * * *
99619460 GTGTCAGTGTAAGACCATGTCTGCGACATGGCATCGGCATGGTTATG-TGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG--AAGATGA
* * *
99619510 GAGCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCCTCGAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
*
99619559 TAGCCAGTGTAA-AGCCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CCATGTCTGGGACATGGCATCG
99619595 ACACTTTACC
Statistics
Matches: 216, Mismatches: 41, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.05
45 14 0.06
46 67 0.31
47 29 0.13
48 26 0.12
49 35 0.16
50 35 0.16
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
Found at i:99625829 original size:27 final size:27
Alignment explanation
Indices: 99625777--99625830 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
99625767 ATTTTTGTTA
*
99625777 AGTTATAAATTATAAATATATTATTTT
1 AGTTATAAATTATAAATAAATTATTTT
* *
99625804 AGTTATAAATTAT-ATTAAATTAATTT
1 AGTTATAAATTATAAATAAATTATTTT
99625830 A
1 A
99625831 AAATAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (27 bp):
AGTTATAAATTATAAATAAATTATTTT
Found at i:99626169 original size:21 final size:21
Alignment explanation
Indices: 99626140--99626180 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
99626130 ATTTTATTTA
* *
99626140 ATTAGTAAATAGATATTTATT
1 ATTAGTAAAAAAATATTTATT
*
99626161 ATTATTAAAAAAATATTTAT
1 ATTAGTAAAAAAATATTTAT
99626181 GAGATAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
ATTAGTAAAAAAATATTTATT
Found at i:99627222 original size:33 final size:33
Alignment explanation
Indices: 99627179--99627255 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
99627169 ATGGATAAGT
* *
99627179 ATTGATATTGAATTGTATATTAA-TGAAAAGTGAA
1 ATTGA-ATTGAATTGTAAATGAATTG-AAAGTGAA
* *
99627213 ATTGAATTGATTTGTAAATGAATTGAAAGTGAT
1 ATTGAATTGAATTGTAAATGAATTGAAAGTGAA
99627246 ATTGAATTGA
1 ATTGAATTGA
99627256 GAAAATGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 31 0.82
34 7 0.18
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (33 bp):
ATTGAATTGAATTGTAAATGAATTGAAAGTGAA
Found at i:99632854 original size:39 final size:39
Alignment explanation
Indices: 99632809--99632959 Score: 257
Period size: 39 Copynumber: 3.9 Consensus size: 39
99632799 TTCAAGACGC
99632809 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGT
* *
99632848 TGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCCTGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGT
*
99632887 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGT
* *
99632926 TGGAAATGTATCCAGGCTAAAGACCCGCAGGCTT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
99632960 TGTGCTGGTA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGT
Found at i:99636163 original size:27 final size:27
Alignment explanation
Indices: 99636133--99636419 Score: 346
Period size: 27 Copynumber: 10.6 Consensus size: 27
99636123 AAAGTACTCC
99636133 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
99636160 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** * *
99636187 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
99636214 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
99636241 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* **
99636268 CGATTTATAGAATTACCATTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
* * **
99636294 CTAATTTACATAATTACCATTTTACCCT
1 C-GATTTACAGAATTACTGTTTTACCCT
*
99636322 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
*
99636349 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
99636376 TGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
99636403 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
99636420 AAAATACCCT
Statistics
Matches: 231, Mismatches: 23, Indels: 12
0.87 0.09 0.05
Matches are distributed among these distances:
26 2 0.01
27 226 0.98
28 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:99637765 original size:14 final size:14
Alignment explanation
Indices: 99637746--99637774 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
99637736 TTTGATGCAC
99637746 GATATGTATGATAT
1 GATATGTATGATAT
99637760 GATATGTATGATAT
1 GATATGTATGATAT
99637774 G
1 G
99637775 CACATGACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.41
Consensus pattern (14 bp):
GATATGTATGATAT
Found at i:99637806 original size:18 final size:18
Alignment explanation
Indices: 99637740--99637828 Score: 107
Period size: 18 Copynumber: 5.1 Consensus size: 18
99637730 TGGGATTTTG
99637740 ATGCACGAT-ATGTATGAT
1 ATGCAC-ATGATGTATGAT
99637758 ATG---AT-ATGTATGAT
1 ATGCACATGATGTATGAT
99637772 ATGCACATGACATGTATGAT
1 ATGCACATG--ATGTATGAT
99637792 ATGCACATGATGTATGAT
1 ATGCACATGATGTATGAT
*
99637810 ATGCAGATGATGTATGAT
1 ATGCACATGATGTATGAT
99637828 A
1 A
99637829 CACGAGATGT
Statistics
Matches: 64, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
14 14 0.22
17 2 0.03
18 30 0.47
20 18 0.28
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (18 bp):
ATGCACATGATGTATGAT
Found at i:99637812 original size:5 final size:5
Alignment explanation
Indices: 99637746--99637794 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
99637736 TTTGATGCAC
* *
99637746 GATAT G-TAT GATAT GATAT G-TAT GATAT GCACAT GACAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
99637794 G
1 G
99637795 CACATGATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
4 11 0.29
5 23 0.61
6 4 0.11
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (5 bp):
GATAT
Found at i:99637812 original size:38 final size:32
Alignment explanation
Indices: 99637740--99637828 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 32
99637730 TGGGATTTTG
99637740 ATGCACGAT-ATGTATGATATGATATGTATGAT
1 ATGCAC-ATGATGTATGATATGATATGTATGAT
99637772 ATGCACATGACATGTATGATATGCACATGATGTATGAT
1 ATGCACATG--ATGTATGATATG---AT-ATGTATGAT
*
99637810 ATGCAGATGATGTATGATA
1 ATGCACATGATGTATGATA
99637829 CACGAGATGT
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
31 2 0.04
32 6 0.12
34 12 0.24
36 10 0.20
37 2 0.04
38 17 0.35
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (32 bp):
ATGCACATGATGTATGATATGATATGTATGAT
Found at i:99637941 original size:24 final size:24
Alignment explanation
Indices: 99637885--99638074 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
99637875 GAGGAAGTGA
99637885 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
99637908 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
**
99637932 AAAAGGGCTTATGCCTTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
99637956 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
99637980 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
99638003 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
99638027 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
99638051 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
99638075 ATGATAAAGC
Statistics
Matches: 149, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
23 43 0.29
24 95 0.64
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:99637954 original size:47 final size:47
Alignment explanation
Indices: 99637885--99638053 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
99637875 GAGGAAGTGA
99637885 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
** *
99637932 AAAAGGGCTTATGCCTTAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
99637980 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
99638027 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
99638054 AGAGGCTAGG
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 68 0.61
48 43 0.39
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:99638008 original size:71 final size:71
Alignment explanation
Indices: 99637884--99638074 Score: 260
Period size: 71 Copynumber: 2.7 Consensus size: 71
99637874 GGAGGAAGTG
* * **
99637884 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCTT
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
99637949 AGTTAT
66 AGTTAT
* *
99637955 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
99638019 CAGTTAT
65 CAGTTAT
* *
99638026 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
99638075 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
71 74 0.69
72 33 0.31
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:99638293 original size:30 final size:31
Alignment explanation
Indices: 99638259--99638321 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
99638249 CGTTTACCGT
*
99638259 AAAGGCTTCGG-CCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
99638289 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
99638320 AA
1 AA
99638322 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 11 0.38
31 18 0.62
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:99640970 original size:27 final size:27
Alignment explanation
Indices: 99640940--99641223 Score: 344
Period size: 27 Copynumber: 10.6 Consensus size: 27
99640930 AAAGTACTCC
99640940 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
99640967 CGATTTATAAAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACTGTTTTACCCT
** * *
99640993 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
99641020 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
99641047 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
99641074 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** * **
99641101 TAATTTACATAATTACCATTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
*
99641127 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
99641154 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
99641181 TGATTTACA-AATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
99641207 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
99641224 AAAATACCCT
Statistics
Matches: 226, Mismatches: 24, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
26 72 0.32
27 152 0.67
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:99641043 original size:80 final size:81
Alignment explanation
Indices: 99640940--99641222 Score: 376
Period size: 80 Copynumber: 3.5 Consensus size: 81
99640930 AAAGTACTCC
* * * *
99640940 CGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTA-CCTCGATTTGTAAA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGA
99641004 ATTACCGTTTTACCCT
66 ATTACCGTTTTACCCT
* **
99641020 CGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAG
1 CGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATTTATAG
99641084 AATTACCGTTTTACCCT
65 AATTACCGTTTTACCCT
** * * * * *
99641101 TAATTTACATAATTACCATTTTACCC-CGATTTACATAATTATCGTTTTACCCTCGATTTACAGA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGA
*
99641165 ATTACTGTTTTACCCT
66 ATTACCGTTTTACCCT
* *
99641181 TGATTTACA-AATTACTGTTTTACCCTCGATTTACAAAATTAC
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
99641223 TAAAATACCC
Statistics
Matches: 177, Mismatches: 22, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
79 15 0.08
80 111 0.63
81 51 0.29
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGA
ATTACCGTTTTACCCT
Found at i:99641235 original size:53 final size:54
Alignment explanation
Indices: 99640940--99641224 Score: 353
Period size: 53 Copynumber: 5.3 Consensus size: 54
99640930 AAAGTACTCC
* * * *
99640940 CGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTA-CCT
1 CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
** **
99640993 CGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
* *
99641047 C-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
** * * * *
99641101 TAATTTACATAATTACCATTTTACCC-CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
* * * *
99641154 CGATTTACAGAATTACTGTTTTACCCTTGATTTACA-AATTACTGTTTTACCCT
1 CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
99641207 CGATTTACAAAATTACTA
1 CGATTTACAAAATTACTA
99641225 AAATACCCTT
Statistics
Matches: 200, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
53 121 0.61
54 78 0.39
55 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
Done.