Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 322 of 438
Found at i:100814626 original size:24 final size:24
Alignment explanation
Indices: 100814532--100814650 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
100814522 GAGGAAGTGA
*
100814532 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
100814556 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
100814579 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
100814603 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
100814627 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
100814651 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:100814892 original size:38 final size:38
Alignment explanation
Indices: 100814841--100814934 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
100814831 CGTTTACAGT
100814841 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
100814879 AAAGGCTTCGGCCCAGTATTATGAGATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
100814917 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
100814935 GCATGATTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 39 0.75
39 13 0.25
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:100816335 original size:38 final size:38
Alignment explanation
Indices: 100816291--100816462 Score: 238
Period size: 38 Copynumber: 4.5 Consensus size: 38
100816281 ACTTAAAGGT
100816291 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
100816329 CCGCAGGCTTCGTGCTGGTATTATAT-CGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
** *
100816366 TTGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
* * * *
100816404 CCGCAGGCTTAGTGCTAGTATTATATTCGAGCTTAAAGTC
1 CCGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-TC
* *
100816444 CCGCAGGTTTTGTGCTGGT
1 CCGCAGGCTTCGTGCTGGT
100816463 GACTGGATTC
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
37 34 0.28
38 62 0.52
39 6 0.05
40 18 0.15
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.34
Consensus pattern (38 bp):
CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
Found at i:100821593 original size:21 final size:21
Alignment explanation
Indices: 100821538--100821587 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
100821528 AAAATAGGGC
100821538 ACACGCCCGTGTGGAAAGGTA
1 ACACGCCCGTGTGGAAAGGTA
*
100821559 ACACGCCCGTGTGGAAGGGTA
1 ACACGCCCGTGTGGAAAGGTA
100821580 ACACGCCC
1 ACACGCCC
100821588 ACGTGGTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.30, G:0.32, T:0.12
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAAGGTA
Found at i:100822871 original size:49 final size:50
Alignment explanation
Indices: 100822771--100822880 Score: 143
Period size: 49 Copynumber: 2.2 Consensus size: 50
100822761 AGATGCTGAC
* * * *
100822771 GCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGTTGAT
1 GCCATGTCCCAGACATAGTCTTACAATGGCTCTCATATAGCGAGGTCGAT
* *
100822821 GCCATGTCCCAGACA-AGTCTTACAATGGCTCTCATCTATCG-GTGTCGAT
1 GCCATGTCCCAGACATAGTCTTACAATGGCTCTCATATAGCGAG-GTCGAT
100822870 GCCATGTCCCA
1 GCCATGTCCCA
100822881 AAAAAGTGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
48 1 0.02
49 37 0.70
50 15 0.28
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATAGTCTTACAATGGCTCTCATATAGCGAGGTCGAT
Found at i:100823024 original size:46 final size:46
Alignment explanation
Indices: 100822911--100823082 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
100822901 ACCATAAGCT
* * * * *
100822911 GATGACATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGA-GGTC
1 GATG-CATGTCCCAGACATGTCTTACACTAGC-TCT-CAT-GCTATGGCC
*
100822960 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTAAAT-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATGCT--ATGGCC
* * * * **
100823006 GATGCATGTCCCAAACATGTCTCACACTGGCTCTCATGCTCTGGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCC
100823052 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
100823083 GCACATATCA
Statistics
Matches: 102, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 66 0.65
47 4 0.04
48 26 0.25
49 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCC
Found at i:100825422 original size:29 final size:28
Alignment explanation
Indices: 100825390--100825492 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
100825380 GTGACGAGAT
* *
100825390 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
100825419 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
100825448 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
100825477 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
100825493 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:100833218 original size:29 final size:28
Alignment explanation
Indices: 100833186--100833288 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
100833176 GTGACGAGAT
* *
100833186 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
100833215 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
100833244 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
100833273 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
100833289 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:100841179 original size:46 final size:47
Alignment explanation
Indices: 100841073--100841199 Score: 220
Period size: 46 Copynumber: 2.7 Consensus size: 47
100841063 GTGCTAATAA
100841073 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
* *
100841120 TACCTTAATTTGGCTACAGGCCATGATATAGGTATTTT-AGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
*
100841166 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTA
100841200 ATCCGGGATA
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 39 0.52
47 36 0.48
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
Found at i:100850018 original size:39 final size:39
Alignment explanation
Indices: 100849959--100850111 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
100849949 AAATGTTCGA
* *
100849959 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
100849998 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
100850037 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* * *
100850076 GTGATATCCGGGTTAAGTCCCGAAGGTATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
100850112 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 88 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:100850127 original size:40 final size:39
Alignment explanation
Indices: 100849960--100850142 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
100849950 AATGTTCGAG
* * *
100849960 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
100849999 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
100850038 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
100850077 TGATATCCGGGTTAAGTCCCGAAGGTATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
100850117 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
100850143 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 87 0.69
40 39 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:100853758 original size:24 final size:24
Alignment explanation
Indices: 100853693--100853761 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
100853683 AAGTAAATAC
100853693 AAAAAGATACA-AAAATAAAT-AAA
1 AAAAAGATA-AGAAAATAAATAAAA
* * *
100853716 CAAAA-TTATGAACATATAAATAAAA
1 AAAAAGATAAGAA-A-ATAAATAAAA
100853741 AAAAAGATAAGAAAATAAATA
1 AAAAAGATAAGAAAATAAATA
100853762 CAATTTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
22 4 0.11
23 5 0.14
24 13 0.37
25 8 0.23
26 5 0.14
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.17
Consensus pattern (24 bp):
AAAAAGATAAGAAAATAAATAAAA
Found at i:100854110 original size:17 final size:17
Alignment explanation
Indices: 100854085--100854136 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
100854075 ATAGGGAATA
100854085 ATATATAATAAAATATG
1 ATATATAATAAAATATG
* *
100854102 ATATGTAATAAAATATAAA
1 ATATATAATAAAATAT--G
*
100854121 ATATATAATGAAATAT
1 ATATATAATAAAATAT
100854137 AAATAATATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 15 0.52
19 14 0.48
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:100854110 original size:24 final size:24
Alignment explanation
Indices: 100854083--100854149 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
100854073 ATATAGGGAA
100854083 TAATATATAATAAAATATGATATG
1 TAATATATAATAAAATATGATATG
*
100854107 TAATA-AAATATAAAATAT-ATAATG
1 TAATATATA-ATAAAATATGAT-ATG
*
100854131 -AA-ATATAA-ATAATATGATA
1 TAATATATAATAAAATATGATA
100854150 AAATAACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
21 7 0.19
22 4 0.11
23 8 0.22
24 17 0.47
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (24 bp):
TAATATATAATAAAATATGATATG
Found at i:100854129 original size:19 final size:18
Alignment explanation
Indices: 100854084--100854154 Score: 81
Period size: 19 Copynumber: 3.9 Consensus size: 18
100854074 TATAGGGAAT
100854084 AATATATAATAAAATAT-
1 AATATATAATAAAATATA
* *
100854101 GATATGTAATAAAATATAA
1 AATATATAATAAAATAT-A
*
100854120 AATATATAATGAAATATA
1 AATATATAATAAAATATA
*
100854138 AATAATATGATAAAATA
1 AAT-ATATAATAAAATA
100854155 ACCTATAATG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
17 15 0.34
18 4 0.09
19 25 0.57
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
AATATATAATAAAATATA
Found at i:100855163 original size:44 final size:44
Alignment explanation
Indices: 100855095--100855787 Score: 863
Period size: 44 Copynumber: 15.8 Consensus size: 44
100855085 AGACGAAATG
* **
100855095 TTCGATCTGCTCTCTGAAAATACAGAGACGCCAAATCAACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
100855139 TTCTG-TTTGCTTTCTGGCAATACAGAGACGCCAAATCTGCTATC
1 TTC-GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100855183 TTTGACCTGCTCTCTGACAATACAGAGACACCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100855227 TTCGATCTGCTCTCTAACAATACAAAGACGCTAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
100855271 TTCGATTTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTATT
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100855315 TTTGACCTGCTTTCTGACAATACAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
100855359 TTCGATCTGCTCTCTGACAATACAGAGATGCTAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
*
100855403 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100855447 TTCGATCTGCTCTCTGTCAATACAAAGACACTAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
100855491 TTCGATCTGCTCTCTGGCAATACAAAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * * * *
100855535 TTCGACCTTCTCTCTGATAATACAGAGAAGTCAAATTTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100855579 TTCGATCTACTCTTTGACAATACAGAGATGCCAAATCT-ATCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* * *
100855623 TTCGATCTACTCTCTGTCAATACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
100855667 TTTGATTTGCTCTCTGACAATACAGAGACGCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* *
100855711 TTCGATCTGCTCTCTGTCAATACAGAGACTCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
100855755 TTTGATCTGCTCTCTGTCAATACAGAGATGCCA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCA
100855788 GATGTCACCG
Statistics
Matches: 559, Mismatches: 82, Indels: 16
0.85 0.12 0.02
Matches are distributed among these distances:
43 4 0.01
44 551 0.99
45 4 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
Found at i:100858084 original size:29 final size:29
Alignment explanation
Indices: 100858023--100858121 Score: 150
Period size: 28 Copynumber: 3.5 Consensus size: 29
100858013 ACAGTAAGTC
*
100858023 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
*
100858051 CGCACACTTATTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
100858080 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
100858108 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100858122 CAATCGCATT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
28 33 0.50
29 32 0.48
30 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:100861189 original size:39 final size:39
Alignment explanation
Indices: 100861135--100861297 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
100861125 TGTGTATGAA
*
100861135 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
100861174 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
100861213 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
100861252 TGTACGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
100861292 TGTGCG
1 TGTGCG
100861298 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 96 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:100870653 original size:40 final size:40
Alignment explanation
Indices: 100870564--100870874 Score: 518
Period size: 40 Copynumber: 7.8 Consensus size: 40
100870554 CCAGCATGAT
* *
100870564 TGCTCTTCTGG-ACCTAGCCCGGATACATCACTAG-ACGAA
1 TGCTCTTC-GGAACTTAGTCCGGATACATCACTAGCACGAA
100870603 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
100870643 TGCTATTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
100870683 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
100870723 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
100870763 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
100870803 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
100870843 TGCTCTTCGGAACTTAGTCCAGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
100870875 CTCAATTCTC
Statistics
Matches: 260, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
38 2 0.01
39 29 0.11
40 229 0.88
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:100872740 original size:37 final size:35
Alignment explanation
Indices: 100872690--100872775 Score: 136
Period size: 37 Copynumber: 2.3 Consensus size: 35
100872680 TACGAAGTCT
100872690 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATC-GGTC
100872726 GTACCCGGACATAATCTCCACACGTAGTCATCGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGTC
100872762 TCACCCGGAACATA
1 T-ACCCGG-ACATA
100872776 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
35 1 0.02
36 10 0.21
37 36 0.77
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (35 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGTC
Found at i:100872911 original size:49 final size:49
Alignment explanation
Indices: 100872844--100873045 Score: 359
Period size: 49 Copynumber: 4.1 Consensus size: 49
100872834 TTTACCACAT
* * *
100872844 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
100872893 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
100872942 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
100872991 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
100873040 ATATAT
1 ATATAT
100873046 TATTATGTAC
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 147 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:100881117 original size:40 final size:40
Alignment explanation
Indices: 100880990--100881119 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
100880980 ATGCTGGAAA
* *
100880990 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
100881030 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
100881070 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
100881110 TTATATCCGG
1 TTATATCCGG
100881120 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:100889166 original size:40 final size:40
Alignment explanation
Indices: 100889039--100889168 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
100889029 ATGCTGGAAA
* *
100889039 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
100889079 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
100889119 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
100889159 TTATATCCGG
1 TTATATCCGG
100889169 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:100894136 original size:37 final size:37
Alignment explanation
Indices: 100894095--100894173 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
100894085 AACCTTTAGT
*
100894095 TCGGGGCATACCCGGACAAAATCTCCAC-CAGTGGTCA
1 TCGGGGCATACCCGGACAAAATCTCCACAC-GTAGTCA
* * * *
100894132 TCGGGTCTTACCCGGGCATAATCTCCACACGTAGTCA
1 TCGGGGCATACCCGGACAAAATCTCCACACGTAGTCA
100894169 TCGGG
1 TCGGG
100894174 TCTTTAGAGC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 35 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (37 bp):
TCGGGGCATACCCGGACAAAATCTCCACACGTAGTCA
Found at i:100894174 original size:37 final size:37
Alignment explanation
Indices: 100894103--100894177 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
100894093 GTTCGGGGCA
*
100894103 TACCCGGACAAAATCTCCACCAGTGGTCATCGGGTCT
1 TACCCGGACAAAATCTCCACCAGTAGTCATCGGGTCT
* *
100894140 TACCCGGGCATAATCTCCA-CACGTAGTCATCGGGTCT
1 TACCCGGACAAAATCTCCACCA-GTAGTCATCGGGTCT
100894177 T
1 T
100894178 TAGAGCTTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 2 0.06
37 32 0.94
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (37 bp):
TACCCGGACAAAATCTCCACCAGTAGTCATCGGGTCT
Found at i:100894362 original size:47 final size:47
Alignment explanation
Indices: 100894293--100895009 Score: 1125
Period size: 47 Copynumber: 15.3 Consensus size: 47
100894283 CCCTTCAGGA
* * * * *
100894293 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
100894340 CTTATCACATATATACGCTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100894387 CTTATCACATATAT-GACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100894433 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
100894480 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100894527 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100894574 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100894621 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100894668 CTTATCACATATAT-CACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100894714 CTTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100894761 CTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100894808 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100894855 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100894902 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
100894949 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100894995 CTTATCACATATATA
1 CTTATCACATATATA
100895010 TATCTCATAC
Statistics
Matches: 625, Mismatches: 43, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
46 99 0.16
47 526 0.84
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:100894811 original size:281 final size:280
Alignment explanation
Indices: 100894293--100895009 Score: 1209
Period size: 281 Copynumber: 2.5 Consensus size: 280
100894283 CCCTTCAGGA
* * * * *
100894293 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACGC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
100894358 TTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATGACTTTCACATTCATCACATGG
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCACTTTCACATTCATCACATCG
100894423 GCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC
131 GCCATT-GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC
* *
100894488 ATATATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACAT
195 ATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
100894553 TCATCACATCGGCCATTAGGC
260 TCATCACATCGGCCATTAGGC
* * *
100894574 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
100894639 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCACTTTCACATTCATCACATCG
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCACTTTCACATTCATCACATCG
*
100894704 GCCATTCGGCCTTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC
131 GCCATT-GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC
* *
100894769 ATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATGCACTTTCACAT
195 ATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
100894834 TCATCACATCGGCCATTAGGC
260 TCATCACATCGGCCATTAGGC
*
100894855 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * *
100894920 TTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCACTTTCACATTCATCACATT
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT-CACTTTCACATTCATCACATC
*
100894985 GGCCATTGGCCTTATCACATATATA
130 GGCCATTGGCCTTGTCACATATATA
100895010 TATCTCATAC
Statistics
Matches: 409, Mismatches: 26, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
281 382 0.93
282 27 0.07
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (280 bp):
CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCACTTTCACATTCATCACATCG
GCCATTGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCA
TATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
CATCACATCGGCCATTAGGC
Found at i:100899001 original size:14 final size:14
Alignment explanation
Indices: 100898979--100899008 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
100898969 ATTCGGCTCT
100898979 TGCACATATATATA
1 TGCACATATATATA
*
100898993 TGCATATATATATA
1 TGCACATATATATA
100899007 TG
1 TG
100899009 TTTGCACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (14 bp):
TGCACATATATATA
Found at i:100899801 original size:40 final size:39
Alignment explanation
Indices: 100899715--100899862 Score: 138
Period size: 40 Copynumber: 3.7 Consensus size: 39
100899705 TACTCGAATG
* * ***
100899715 ATATCCGGGCTAAG-TCCCAAGGCTTTTGTGCTAACCGACT
1 ATATCCGGGCTAAGATCCGAAGG-ATTTGTGCT-AGTAACT
* *
100899755 ACATCCGGACTAAGATCCGAAGGTATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGATCCGAAGG-ATTTGTGCTAGTAACT
* * *
100899795 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGG-ATTTGTGCTAGTAACT
*
100899835 ATATCCGGGCTAAGACCCGAAGGATTTG
1 ATATCCGGGCTAAGATCCGAAGGATTTG
100899863 GGCGAGTGGT
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
39 5 0.06
40 69 0.78
41 15 0.17
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGATCCGAAGGATTTGTGCTAGTAACT
Found at i:100899848 original size:80 final size:79
Alignment explanation
Indices: 100899715--100899862 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 79
100899705 TACTCGAATG
* * * *
100899715 ATATCCGGGCTAAGTCCCAAGGCTTTTGTGCTAACCGACTACATCCGGACTAAGATCCGAAGGTA
1 ATATCCGGGCTAAGTCCCAAGGCATTTATGCTAACCGACCACATCCGGACTAAGACCCGAAGG-A
100899780 TTTGTGCTAGTAACT
65 TTTGTGCTAGTAACT
** * *
100899795 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCATATCCGGGCTAAGACCCGAAGGA
1 ATATCCGGGCTAAGTCCC-AAGGCATTTATGCTAACCGACCACATCCGGACTAAGACCCGAAGGA
100899859 TTTG
65 TTTG
100899863 GGCGAGTGGT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
79 5 0.08
80 42 0.71
81 12 0.20
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCAAGGCATTTATGCTAACCGACCACATCCGGACTAAGACCCGAAGGAT
TTGTGCTAGTAACT
Found at i:100901444 original size:40 final size:40
Alignment explanation
Indices: 100901389--100901590 Score: 316
Period size: 40 Copynumber: 5.0 Consensus size: 40
100901379 CCTCATAATT
** * *
100901389 CTAGCACGAATGCTCTTC-GAGGTTTCGCCCGAATATATCA
1 CTAGCACGAATGCTCTTCGGA-ACTTAGCCCGGATATATCA
100901429 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
*
100901469 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
*
100901509 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
* *
100901549 CTAGCACGAATGCTCTTCGGAAGTTAGTCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
100901589 CT
1 CT
100901591 CTCAATTCTC
Statistics
Matches: 155, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 153 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
Found at i:100903769 original size:47 final size:47
Alignment explanation
Indices: 100903703--100904561 Score: 1416
Period size: 47 Copynumber: 18.3 Consensus size: 47
100903693 CCCTTCGGGA
* * * * * *
100903703 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100903750 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100903797 CTTATCACATATATGCAC-TTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100903843 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
100903890 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100903937 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100903984 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100904031 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100904078 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100904125 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
100904172 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100904219 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100904266 CTTGTCACATATATACACTTTCA-ATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100904312 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100904359 CATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100904406 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100904453 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
100904500 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100904547 CTTATCACATATATA
1 CTTATCACATATATA
100904562 TATCTCATAC
Statistics
Matches: 760, Mismatches: 50, Indels: 4
0.93 0.06 0.00
Matches are distributed among these distances:
46 87 0.11
47 673 0.89
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:100903781 original size:25 final size:24
Alignment explanation
Indices: 100903706--100903785 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 24
100903696 TTCGGGACTT
*
100903706 ATCACATTTATACACTTTCACATCC
1 ATCACA-TTATACACTTTCACATTC
*** ***
100903731 ATCACATTGGCCACTCGGAC-TT-
1 ATCACATTATACACTTTCACATTC
100903753 ATCACATATATACACTTTCACATTC
1 ATCACAT-TATACACTTTCACATTC
100903778 ATCACATT
1 ATCACATT
100903786 GGCCATTCGG
Statistics
Matches: 39, Mismatches: 13, Indels: 7
0.66 0.22 0.12
Matches are distributed among these distances:
22 7 0.18
23 8 0.21
24 11 0.28
25 13 0.33
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (24 bp):
ATCACATTATACACTTTCACATTC
Found at i:100908998 original size:23 final size:22
Alignment explanation
Indices: 100908972--100909051 Score: 61
Period size: 23 Copynumber: 3.5 Consensus size: 22
100908962 CAATATTAAG
100908972 TAAATACAAAAAGATACAAAAAA
1 TAAATACAAAAAGATA-AAAAAA
** * * *
100908995 TAAATAAACAAAATTATGAACATA
1 TAAAT--ACAAAAAGATAAAAAAA
* *
100909019 TAAATAAAAAAAAGATAAGAAAA
1 TAAAT-ACAAAAAGATAAAAAAA
100909042 TAAATACAAA
1 TAAATACAAA
100909052 TTTTTTTAAA
Statistics
Matches: 42, Mismatches: 13, Indels: 5
0.70 0.22 0.08
Matches are distributed among these distances:
22 4 0.10
23 21 0.50
24 9 0.21
25 8 0.19
ACGTcount: A:0.71, C:0.06, G:0.05, T:0.17
Consensus pattern (22 bp):
TAAATACAAAAAGATAAAAAAA
Found at i:100909007 original size:25 final size:24
Alignment explanation
Indices: 100908977--100909047 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
100908967 TTAAGTAAAT
100908977 ACAAAAAGATACAAAAAATAAATAA
1 ACAAAAAGATA-AAAAAATAAATAA
** * * *
100909002 ACAAAATTATGAACATATAAATAA
1 ACAAAAAGATAAAAAAATAAATAA
*
100909026 A-AAAAAGATAAGAAAATAAATA
1 ACAAAAAGATAAAAAAATAAATA
100909048 CAAATTTTTT
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
23 15 0.43
24 12 0.34
25 8 0.23
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.17
Consensus pattern (24 bp):
ACAAAAAGATAAAAAAATAAATAA
Found at i:100909396 original size:17 final size:17
Alignment explanation
Indices: 100909371--100909442 Score: 65
Period size: 17 Copynumber: 4.2 Consensus size: 17
100909361 ATAGGGAATA
100909371 ATATATAATAAAATATG
1 ATATATAATAAAATATG
* *
100909388 ATATGTAATAAAATATA
1 ATATATAATAAAATATG
* *
100909405 AAATATAAAAAATATAATG
1 ATATATAATAAA-AT-ATG
* *
100909424 AAATATAA-ATAATATG
1 ATATATAATAAAATATG
100909440 ATA
1 ATA
100909443 AAATAACCTA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
16 5 0.11
17 26 0.58
18 4 0.09
19 10 0.22
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:100909446 original size:19 final size:19
Alignment explanation
Indices: 100909402--100909447 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
100909392 GTAATAAAAT
100909402 ATAAAATATAAAAAATATA
1 ATAAAATATAAAAAATATA
* * *
100909421 ATGAAATATAAATAATATG
1 ATAAAATATAAAAAATATA
100909440 ATAAAATA
1 ATAAAATA
100909448 ACCTATAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (19 bp):
ATAAAATATAAAAAATATA
Found at i:100911097 original size:44 final size:44
Alignment explanation
Indices: 100911047--100911739 Score: 800
Period size: 44 Copynumber: 15.8 Consensus size: 44
100911037 AGCTGAAATG
* *
100911047 TTCGATCTGCTCTCTGACAATACAGTGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100911091 TTCGATCTACTCTTTGGCAATACTGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * * * *
100911135 TTTGACCTACACTCTGACAATACAGAGATGCCAAATATGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100911179 TTCGATCTACTCTCTGACAATACAAAGACGCTAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
100911223 TTCGATCTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * *
100911267 TTCGACCTGCTTTTTGGCAATACAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
100911311 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCT-ATCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* *
100911355 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
100911399 TTCGATATGCTCTCTGACAATACAAAGACGCTAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
100911443 TTCGATCTACTCTCTGGCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* ** *
100911487 TTCGACCTGCTCTCAAACAATACAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
100911531 TTTGATCTGCTCTCTGACAATATAGAG-CTGCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGAC-GCCAAATCTGCT-ATC
* * * * *
100911575 TTCGATGTACTCTCTGTCAATACAGAGATGCCAAATCTGCTATA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * * *
100911619 TTTGATTTACTCTCTGACAAAACAGAGGCTCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* * * *
100911663 TTCGATCTGCTCTCTGTCAAAATAGAGACACCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * *
100911707 TTTGATCTGCTCGCCGTCAATACAGAGATGCCA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCA
100911740 GATGTCACCG
Statistics
Matches: 551, Mismatches: 90, Indels: 16
0.84 0.14 0.02
Matches are distributed among these distances:
43 4 0.01
44 544 0.99
45 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
Found at i:100921312 original size:24 final size:24
Alignment explanation
Indices: 100921247--100921315 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
100921237 AAGTAAATAC
100921247 AAAAAGATACA-AAAATAAAT-AAA
1 AAAAAGATA-AGAAAATAAATAAAA
* * *
100921270 CAAAA-TTATGAACATATAAATAAAA
1 AAAAAGATAAGAA-A-ATAAATAAAA
100921295 AAAAAGATAAGAAAATAAATA
1 AAAAAGATAAGAAAATAAATA
100921316 CAAATTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
22 4 0.11
23 5 0.14
24 13 0.37
25 8 0.23
26 5 0.14
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.17
Consensus pattern (24 bp):
AAAAAGATAAGAAAATAAATAAAA
Found at i:100921655 original size:12 final size:12
Alignment explanation
Indices: 100921640--100921701 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
100921630 TATAGGGAAT
100921640 AATATAATATAA
1 AATATAATATAA
* **
100921652 AATATGATATGT
1 AATATAATATAA
*
100921664 AATAAAATATAA
1 AATATAATATAA
*
100921676 AATATAAATATAT
1 AATAT-AATATAA
100921689 AATGA-AATATAA
1 AAT-ATAATATAA
100921701 A
1 A
100921702 TAATATGATA
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
12 28 0.74
13 9 0.24
14 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (12 bp):
AATATAATATAA
Found at i:100921666 original size:24 final size:23
Alignment explanation
Indices: 100921638--100921711 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 23
100921628 AATATAGGGA
100921638 ATAATATAATATAAAATATGATAT
1 ATAATA-AATATAAAATATGATAT
* *
100921662 GTAATAAAATATAAAATATAAATAT
1 ATAAT-AAATATAAAATAT-GATAT
100921687 ATAATGAAATATAAATAATATGATA
1 ATAAT-AAATAT-AA-AATATGATA
100921712 AAATAACCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
24 16 0.39
25 15 0.37
26 5 0.12
27 5 0.12
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (23 bp):
ATAATAAATATAAAATATGATAT
Found at i:100921696 original size:25 final size:24
Alignment explanation
Indices: 100921638--100921701 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
100921628 AATATAGGGA
* *
100921638 ATAATATAATATAAAATATGATAT
1 ATAATAAAATATAAAATATAATAT
*
100921662 GTAATAAAATATAAAATATAAATAT
1 ATAATAAAATATAAAATAT-AATAT
*
100921687 ATAATGAAATATAAA
1 ATAATAAAATATAAA
100921702 TAATATGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 17 0.50
25 17 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (24 bp):
ATAATAAAATATAAAATATAATAT
Found at i:100921715 original size:19 final size:18
Alignment explanation
Indices: 100921672--100921716 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
100921662 GTAATAAAAT
100921672 ATAAAATATAAATATATA
1 ATAAAATATAAATATATA
* *
100921690 ATGAAATATAAATAATATG
1 ATAAAATATAAAT-ATATA
100921709 ATAAAATA
1 ATAAAATA
100921717 ACCTATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (18 bp):
ATAAAATATAAATATATA
Found at i:100923127 original size:44 final size:44
Alignment explanation
Indices: 100923065--100923174 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 44
100923055 CGAAATGTTT
**
100923065 GATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTATCTTC
1 GATCTGCTCTCTGACAATACAGAGACACCAAATCTACTATCTTC
* * * * *
100923109 GATCTGCTTTCTGGCAATACAGAGGCACCAAATCTGCTATCTTT
1 GATCTGCTCTCTGACAATACAGAGACACCAAATCTACTATCTTC
* *
100923153 GACCTGCTCTCTGATAATACAG
1 GATCTGCTCTCTGACAATACAG
100923175 TTATCTTCGA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
GATCTGCTCTCTGACAATACAGAGACACCAAATCTACTATCTTC
Found at i:100923203 original size:74 final size:74
Alignment explanation
Indices: 100923102--100923248 Score: 204
Period size: 74 Copynumber: 2.0 Consensus size: 74
100923092 CCAAATCTAC
* * * * * *
100923102 TATCTTCGATCTGCTTTCTGGCAATACAGAGGCACCAAATCTGCTATCTTTGACCTGCTCTCTGA
1 TATCTTCGATCTACTCTCTGACAATACAAAGACACCAAATCTGCTATCTTCGACCTGCTCTCTGA
*
100923167 TAATACAGT
66 CAATACAGT
* * *
100923176 TATCTTCGATCTACTCTCTGACAATACAAAGACACTAAATCTGCTATCTTCGATCTGCTCTCTGG
1 TATCTTCGATCTACTCTCTGACAATACAAAGACACCAAATCTGCTATCTTCGACCTGCTCTCTGA
100923241 CAATACAG
66 CAATACAG
100923249 AGACGCCAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (74 bp):
TATCTTCGATCTACTCTCTGACAATACAAAGACACCAAATCTGCTATCTTCGACCTGCTCTCTGA
CAATACAGT
Found at i:100923273 original size:118 final size:119
Alignment explanation
Indices: 100923065--100923645 Score: 412
Period size: 132 Copynumber: 4.6 Consensus size: 119
100923055 CGAAATGTTT
* * *
100923065 GATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTATCTTCGATCTGCTTTCTGGCAATACA
1 GATCTGCTCTCTGACAATACAGAGATACCAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACA
* * *
100923130 GAGGCACCAAATCTGCTATCTTTGACCTGCTCTCTGATAATACAG-TTATCTTC
66 GAGACGCCAAATCTGCTATCTTTGACCTGCTCTCTGACAATACAGATTATCTTC
* * * *
100923183 GATCTACTCTCTGACAATACAAAGACACTAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACA
1 GATCTGCTCTCTGACAATACAGAGATACCAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACA
* *
100923248 GAGACGCCAAATCTGCTATCTTTGACCTGCTTTTTGACAATACAGAGACGCCAAATCTATTATCT
66 GAGACGCCAAATCTGCTATCTTTGACCTGCTCTCTGACAATAC----A-G--------ATTATCT
100923313 TC
118 TC
* * * *
100923315 GATCTGCTTTCTGACAATACAGAGATTCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACA
1 GATCTGCTCTCTGACAATACAGAGATACCAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACA
* * * * * *
100923380 AAGACGCTAAATTTGCTATCTTTGATCTACTCTCTGGCAATACAGAGACGCCAAATCTGCTATCT
66 GAGACGCCAAATCTGCTATCTTTGACCTGCTCTCTGACAATAC----A-G----A--T--TATCT
100923445 TC
118 TC
* ** * * *
100923447 GA-CTTGCTCTCTAACAATACAGAGACGCCAAATCT-ATCATCTTCGATCTACTCTCTGTCAATA
1 GATC-TGCTCTCTGACAATACAGAGATACCAAATCTGCT-ATCTTCGATCTGCTCTCTGGCAATA
* * *** *
100923510 CAGAGATGCAAAATCTGCTATCTTTGTTTTGCTCTCTAACAATACAGAGACGCCAAATCTGTCAT
64 CAGAGACGCCAAATCTGCTATCTTTGACCTGCTCTCTGACAATAC----A-G----A--T-T-AT
100923575 CTTC
116 CTTC
* * * * * *
100923579 GATCTGCTCTCTGTCAATACAGAGATGCCAAATTTGCTATCTTTGATCTGCTCTCCGTCAATACA
1 GATCTGCTCTCTGACAATACAGAGATACCAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACA
100923644 GA
66 GA
100923646 AATGCCAGAT
Statistics
Matches: 383, Mismatches: 57, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
118 96 0.25
122 1 0.00
123 1 0.00
128 1 0.00
130 1 0.00
131 3 0.01
132 278 0.73
133 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (119 bp):
GATCTGCTCTCTGACAATACAGAGATACCAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACA
GAGACGCCAAATCTGCTATCTTTGACCTGCTCTCTGACAATACAGATTATCTTC
Found at i:100923652 original size:44 final size:44
Alignment explanation
Indices: 100923176--100923645 Score: 559
Period size: 44 Copynumber: 10.7 Consensus size: 44
100923166 ATAATACAGT
* * * *
100923176 TATCTTCGATCTACTCTCTGACAATACAAAGACACTAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
*
100923220 TATCTTCGATCTGCTCTCTGGCAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * **
100923264 TATCTTTGACCTGCTTTTTGACAATACAGAGACGCCAAATCTAT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* ** *
100923308 TATCTTCGATCTGCTTTCTGACAATACAGAGATTCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
100923352 TATCTTCGATCTGCTCTCTGACAATACAAAGACGCTAAATTTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
100923396 TATCTTTGATCTACTCTCTGGCAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
100923440 TATCTTCGA-CTTGCTCTCTAACAATACAGAGACGCCAAATCT-A
1 TATCTTCGATC-TGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * *
100923483 TCATCTTCGATCTACTCTCTGTCAATACAGAGATGCAAAATCTGC
1 T-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * *
100923528 TATCTTTGTTTTGCTCTCTAACAATACAGAGACGCCAAATCTG-
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
100923571 TCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATTTGC
1 T-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
100923616 TATCTTTGATCTGCTCTCCGTCAATACAGA
1 TATCTTCGATCTGCTCTCTGACAATACAGA
100923646 AATGCCAGAT
Statistics
Matches: 361, Mismatches: 59, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
43 3 0.01
44 355 0.98
45 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:100929084 original size:29 final size:29
Alignment explanation
Indices: 100929052--100929152 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
100929042 ATAGTGAATC
*
100929052 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
100929081 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
100929109 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
100929139 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100929153 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 21 0.34
30 17 0.28
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:100929145 original size:30 final size:29
Alignment explanation
Indices: 100929051--100929152 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
100929041 TATAGTGAAT
* * *
100929051 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
100929080 TCGCACACTTAGTGCTATATAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
100929108 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
100929138 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
100929153 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:100936962 original size:30 final size:30
Alignment explanation
Indices: 100936907--100937037 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
100936897 ATAGTGAATC
*
100936907 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
100936936 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
100936966 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
100936994 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
100937024 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100937038 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:100937017 original size:58 final size:58
Alignment explanation
Indices: 100936906--100937037 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
100936896 TATAGTGAAT
* * * * *
100936906 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
100936965 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
100937023 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
100937038 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:100944971 original size:40 final size:39
Alignment explanation
Indices: 100944897--100945041 Score: 155
Period size: 40 Copynumber: 3.7 Consensus size: 39
100944887 CCGCACCAAG
* * * * * *
100944897 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCAC-AAT
*
100944937 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCAC-AAT
* * * *
100944977 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAT
* *
100945016 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
100945042 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 25 0.28
40 64 0.72
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAT
Found at i:100952940 original size:40 final size:40
Alignment explanation
Indices: 100952866--100953011 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 40
100952856 CCGCACCAAG
* * * * * *
100952866 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
100952906 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * * * *
100952946 GCCTTCGGGTCTTAGCCTGGATATAGCTACTAGCACCATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
100952986 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
100953012 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:100956620 original size:7 final size:7
Alignment explanation
Indices: 100956608--100956637 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
100956598 CTGATATGTA
100956608 ATAAAAT
1 ATAAAAT
100956615 ATAAAAT
1 ATAAAAT
100956622 AT-AAAT
1 ATAAAAT
100956628 ATAAAAT
1 ATAAAAT
100956635 ATA
1 ATA
100956638 TAATGAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
ATAAAAT
Found at i:100956633 original size:20 final size:19
Alignment explanation
Indices: 100956608--100956651 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
100956598 CTGATATGTA
*
100956608 ATAAAATATAAAATATAAAT
1 ATAAAATATAAAAT-GAAAT
*
100956628 ATAAAATATATAATGAAAT
1 ATAAAATATAAAATGAAAT
100956647 ATAAA
1 ATAAA
100956652 TAATATGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (19 bp):
ATAAAATATAAAATGAAAT
Found at i:100956665 original size:19 final size:19
Alignment explanation
Indices: 100956608--100956666 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
100956598 CTGATATGTA
*
100956608 ATAAAATATAAAATATAAAT
1 ATAAAATATATAATA-AAAT
*
100956628 ATAAAATATATAATGAAAT
1 ATAAAATATATAATAAAAT
*
100956647 AT-AAATAATATGATAAAAT
1 ATAAAAT-ATATAATAAAAT
100956666 A
1 A
100956667 ACCTATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 4 0.12
19 17 0.50
20 13 0.38
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAAAATATATAATAAAAT
Found at i:100958274 original size:44 final size:44
Alignment explanation
Indices: 100958215--100958934 Score: 989
Period size: 44 Copynumber: 16.4 Consensus size: 44
100958205 AGCTGAAATG
* *
100958215 TTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * ** *
100958259 TTTGATCTGCTCTCTGGCAATGGAAAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
100958303 TTCGACCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* **
100958347 TTCGATCTGCTCTCTGACAATACAGAGACGCTAAATCTATTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
100958391 ATCGATCTGCTCTCT-AGCAATACAGAGATGCCAAATTTGCTATC
1 TTCGATCTGCTCTCTGA-CAATACAGAGACGCCAAATCTGCTATC
* * * * *
100958435 TTCGACCTACTCTCTGACAATACAAAGACGCTAAATTTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
100958479 TTTGATCTGCTCTCTGA-AATACAGAGACGCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* ** *
100958522 TTCGACCTATTCTCTGACAATACAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
100958566 TTCGATCTACTCTCTGACAATACAGAGATGCAAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
100958610 TTCGATCTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
100958654 TTTGACCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
100958698 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* *
100958742 TTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
100958786 TTCGATCTGCTCTCTGACAATACAAAGACGCTAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100958830 TTTGATCTGCTCTTTGGCAATACAGAGACTCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
100958874 TTCGACCTGTTCTCTGACAATACAGAGACGTCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
100958918 TTCGATCTGCTCTCTGA
1 TTCGATCTGCTCTCTGA
100958935 TAATGGAGAT
Statistics
Matches: 593, Mismatches: 76, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
42 1 0.00
43 36 0.06
44 553 0.93
45 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
Found at i:100964356 original size:40 final size:40
Alignment explanation
Indices: 100964301--100964389 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
100964291 TGAATGATAC
** * *
100964301 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAAACCCGAAGGCATTCATGCGAGTTG-TTATAT
*
100964341 CCGGGCTAAAACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAAACCCGAAGGCATTCATGCGAGTTGTTATAT
100964381 CC-GGCTAAA
1 CCGGGCTAAA
100964390 TTCCGAAGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 7 0.16
40 34 0.79
41 2 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAAACCCGAAGGCATTCATGCGAGTTGTTATAT
Found at i:100967723 original size:38 final size:40
Alignment explanation
Indices: 100967600--100967779 Score: 176
Period size: 38 Copynumber: 4.6 Consensus size: 40
100967590 TCGAATGATG
* * *
100967600 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
100967640 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
100967680 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * *
100967718 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-T-CTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
100967757 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
100967780 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
38 45 0.38
39 26 0.22
40 39 0.33
41 7 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:100967745 original size:78 final size:79
Alignment explanation
Indices: 100967600--100967779 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 79
100967590 TCGAATGATG
* * * *
100967600 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
100967665 GTGCGAGT-TAATAAA
66 GTGCGAGTCT-AT-AA
* **
100967680 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
100967742 CGTGCGAGTCTATAA
65 CGTGCGAGTCTATAA
**
100967757 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
100967780 TGAGCGAGTC
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
76 8 0.09
77 15 0.17
78 38 0.43
79 16 0.18
80 11 0.12
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCTATAA
Found at i:100973401 original size:39 final size:40
Alignment explanation
Indices: 100973301--100973482 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
100973291 TCGAATGATG
* * *
100973301 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
100973341 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
100973381 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
100973419 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
100973460 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
100973483 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:100973446 original size:78 final size:80
Alignment explanation
Indices: 100973301--100973482 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
100973291 TCGAATGATG
* * * *
100973301 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
100973366 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
100973381 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
100973443 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
100973460 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
100973483 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:100981453 original size:40 final size:39
Alignment explanation
Indices: 100981398--100981605 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
100981388 TGAATGATAC
* * * *
100981398 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
100981438 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
100981478 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
100981518 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
100981558 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
100981598 CC-GGCTAA
1 CCGGGCTAA
100981606 ATTCTGAAGA
Statistics
Matches: 147, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 137 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:100986975 original size:14 final size:14
Alignment explanation
Indices: 100986956--100986986 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
100986946 ATGATATGTA
100986956 ATAAAATATAAAAT
1 ATAAAATATAAAAT
*
100986970 ATAAAATATATAAT
1 ATAAAATATAAAAT
100986984 ATA
1 ATA
100986987 TAATGAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAAAATATAAAAT
Found at i:100986999 original size:17 final size:17
Alignment explanation
Indices: 100986929--100987015 Score: 95
Period size: 17 Copynumber: 5.1 Consensus size: 17
100986919 AATATAGGGA
100986929 ATAATATATAATAAAAT
1 ATAATATATAATAAAAT
* *
100986946 ATGATATGTAATAAAAT
1 ATAATATATAATAAAAT
* *
100986963 ATAAAATATAA-AATAT
1 ATAATATATAATAAAAT
*
100986979 ATAATATATAATGAAAT
1 ATAATATATAATAAAAT
*
100986996 ATAAATAATATGATAAAAT
1 AT-AAT-ATATAATAAAAT
100987015 A
1 A
100987016 ACCTATAATT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
16 14 0.25
17 28 0.50
18 3 0.05
19 11 0.20
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:100987014 original size:19 final size:19
Alignment explanation
Indices: 100986929--100987015 Score: 73
Period size: 19 Copynumber: 4.9 Consensus size: 19
100986919 AATATAGGGA
100986929 ATAATATATAAT-AAA-AT
1 ATAATATATAATAAAATAT
* *
100986946 ATGATATGTAAT-AAA-AT
1 ATAATATATAATAAAATAT
100986963 ATAA-A-AT-ATAAAATAT
1 ATAATATATAATAAAATAT
*
100986979 ATAATATATAATGAAATAT
1 ATAATATATAATAAAATAT
*
100986998 A-AATAATATGATAAAATA
1 ATAAT-ATATAATAAAATA
100987016 ACCTATAATT
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
14 2 0.04
15 4 0.07
16 7 0.12
17 19 0.33
18 5 0.09
19 20 0.35
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
ATAATATATAATAAAATAT
Found at i:100987039 original size:17 final size:16
Alignment explanation
Indices: 100986928--100987039 Score: 75
Period size: 17 Copynumber: 6.7 Consensus size: 16
100986918 TAATATAGGG
100986928 AATAATATATAATAAA
1 AATAATATATAATAAA
* *
100986944 ATATGATATGTAATAAA
1 A-ATAATATATAATAAA
*
100986961 ATATAAAATATAA-AATA
1 A-ATAATATATAATAA-A
*
100986978 TATAATATATAATGAAA
1 AATAATATATAAT-AAA
* *
100986995 TATAAATAATATGAT-AA
1 AAT-AAT-ATATAATAAA
**
100987012 AATAACCTATAATTAAA
1 AATAATATATAA-TAAA
100987029 AATAATATATA
1 AATAATATATA
100987040 TACTATTTTT
Statistics
Matches: 74, Mismatches: 14, Indels: 15
0.72 0.14 0.15
Matches are distributed among these distances:
15 4 0.05
16 16 0.22
17 43 0.58
18 5 0.07
19 6 0.08
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (16 bp):
AATAATATATAATAAA
Found at i:100996514 original size:26 final size:27
Alignment explanation
Indices: 100996485--100996538 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
100996475 TCACACAAGT
*
100996485 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
100996511 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
100996538 T
1 T
100996539 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:100996569 original size:27 final size:27
Alignment explanation
Indices: 100996539--100996684 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
100996529 GGGGCAAAAT
* * *
100996539 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
100996566 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
100996593 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
100996620 AGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
100996647 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
100996674 GATAATTCTAC
1 GGTAATTCTAC
100996685 AACTTATCCA
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:100999310 original size:28 final size:28
Alignment explanation
Indices: 100999278--100999404 Score: 204
Period size: 28 Copynumber: 4.5 Consensus size: 28
100999268 ACAGTAAGTC
100999278 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATT-AAACT
100999306 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATT-AAACT
*
100999335 CGTACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
100999363 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
100999391 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100999405 CAATCTCATT
Statistics
Matches: 95, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
28 61 0.64
29 33 0.35
30 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:100999362 original size:57 final size:56
Alignment explanation
Indices: 100999278--100999404 Score: 204
Period size: 57 Copynumber: 2.2 Consensus size: 56
100999268 ACAGTAAGTC
100999278 CGCACACTTAGTGCTTAATATTCAAACTCGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTTAATATTCAAACTCGCACACTTAGTGCTATACAATT-AAACT
*
100999335 CGTACACTTAGTGCTATACA-ATT-AAACTCGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCT-TA-ATATTCAAACTCGCACACTTAGTGCTATACAATTAAACT
100999391 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100999405 CAATCTCATT
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
56 18 0.27
57 42 0.64
58 5 0.08
59 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (56 bp):
CGCACACTTAGTGCTTAATATTCAAACTCGCACACTTAGTGCTATACAATTAAACT
Found at i:101006133 original size:37 final size:37
Alignment explanation
Indices: 101006054--101006136 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
101006044 AACCTTTAGT
* * *
101006054 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
101006091 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
101006128 TCGGGTCTT
1 TCGGGTCTT
101006137 TAGAGCTCAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:101007877 original size:28 final size:28
Alignment explanation
Indices: 101007808--101007908 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
101007798 GACAAGATTG
* * * *
101007808 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
101007838 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101007866 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
101007895 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101007909 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:101007902 original size:29 final size:28
Alignment explanation
Indices: 101007837--101007908 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
101007827 AAAATTGTAC
*
101007837 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
101007865 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
101007894 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
101007909 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:101015686 original size:28 final size:28
Alignment explanation
Indices: 101015617--101015717 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
101015607 GACAAGATTG
* * * *
101015617 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
101015647 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101015675 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
101015704 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101015718 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:101015711 original size:29 final size:28
Alignment explanation
Indices: 101015646--101015717 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
101015636 AAAATTGTAC
*
101015646 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
101015674 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
101015703 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
101015718 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:101017147 original size:25 final size:25
Alignment explanation
Indices: 101017119--101017197 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
101017109 ACTCGGCCTT
*
101017119 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
101017144 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
101017166 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
101017191 ATCACAT
1 ATCACAT
101017198 GGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:101017182 original size:47 final size:47
Alignment explanation
Indices: 101017113--101017412 Score: 492
Period size: 47 Copynumber: 6.4 Consensus size: 47
101017103 TTACACACTC
* *
101017113 GGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTC
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* *
101017160 GGCCTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* **
101017207 GGCCTTGTCACATATATACACTTTCACATTCATCACCGCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* * * *
101017254 GGCCTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTC
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
101017301 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
101017348 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
101017395 GGCCTTATCACATATATA
1 GGCCTTATCACATATATA
101017413 TATCTCATAC
Statistics
Matches: 232, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 232 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
Found at i:101017367 original size:141 final size:141
Alignment explanation
Indices: 101017113--101017412 Score: 546
Period size: 141 Copynumber: 2.1 Consensus size: 141
101017103 TTACACACTC
*
101017113 GGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
1 GGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
*
101017178 CACTTTCACATTCATCACATGGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCAC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCAC
*
101017243 CGCGGCCATTA
131 AGCGGCCATTA
* *
101017254 GGCCTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
101017319 CACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCAC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCAC
*
101017384 ATCGGCCATTA
131 AGCGGCCATTA
101017395 GGCCTTATCACATATATA
1 GGCCTTATCACATATATA
101017413 TATCTCATAC
Statistics
Matches: 151, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 151 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (141 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCAC
AGCGGCCATTA
Found at i:101022085 original size:27 final size:27
Alignment explanation
Indices: 101022053--101022198 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
101022043 AGGGCAAAAT
* * * *
101022053 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
101022080 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
101022107 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
101022134 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
101022161 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
101022188 GGTAATTCTAC
1 GGTAATTCTAC
101022199 AACTTATCCA
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:101025549 original size:50 final size:50
Alignment explanation
Indices: 101025474--101025751 Score: 256
Period size: 50 Copynumber: 5.5 Consensus size: 50
101025464 CTCTTACGCA
* * *
101025474 TAGTAGCCTGCACTTAGTACAACACATGTGACCTAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* *
101025524 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * * * * * ** *
101025574 CAATAGCTTGCACTTAGTACTACACACGTGA-TTGAAGCTATCAGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CAATCTGGTACACG
* * * * *
101025625 TAGTAGCCTGCAGTAAATAC-ACACATGAGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * *** *
101025674 TAGTAGCCTACACTTAGTACTACACACGTAACCTAA-AACCGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA---TCTGGTACACG
*
101025726 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
101025752 TGTGTTCTCA
Statistics
Matches: 179, Mismatches: 42, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
49 28 0.16
50 97 0.54
51 23 0.13
52 31 0.17
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:101029903 original size:138 final size:138
Alignment explanation
Indices: 101029651--101030210 Score: 784
Period size: 138 Copynumber: 4.1 Consensus size: 138
101029641 TAGAAAAATG
* *
101029651 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTTTTTTATATTTTGACCCAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
101029716 TATAAATGTTTATATTAATAAATTCGGTAAAATATATACAATTGATATTTTGTATGAATCAAATC
66 TATAAATGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
101029781 CATATATT
131 CATATATT
* * * * *
101029789 AATAATATTCTTTCCAAAAGAATATTAATTTCCATGTCTATTATACTTTAACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
101029854 TGTAACTGTTTATATTGATAAATTCAGTGAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAAATGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
101029919 CATATATT
131 CATATATT
* * * * * **
101029927 AATTATATTATTCCCAAAAGGATATTAATTTTCATGTCGTTTATATTTTGACTAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
101029992 TATAAATGTTTAT-TAATATAAATGT-AGTAAAATATATGCAATTAATATTTTGTATGAATCAAA
66 TATAAATGTTTATATTA-ATAAAT-TCAGTAAAATATATACAATTAATATTTTGTATGAATCAAA
101030055 TTCATATATT
129 TTCATATATT
* * * * * *
101030065 AATTATCTTTTTTCCAAAAGAATATTAATTTTCATGTCTTTTACATTTTGACCGAAATCAATTAC
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
**
101030130 TATAAACCTTTAT-TTCAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 TATAAATGTTTATATT-AATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
*
101030194 TTATATATT
130 TCATATATT
101030203 AATTATAT
1 AATTATAT
101030211 CTATGCTCTT
Statistics
Matches: 372, Mismatches: 46, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
137 2 0.01
138 368 0.99
139 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAAATGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:101032986 original size:29 final size:29
Alignment explanation
Indices: 101032952--101033083 Score: 106
Period size: 29 Copynumber: 4.6 Consensus size: 29
101032942 TACTCGATTT
* * *
101032952 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
101032981 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
101033010 CGCACACTTAGTGCCATA-TATTCCCAGCA
1 CGCACACTTAGTGCCATACCATT-CAAGCC
* * * *
101033039 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
101033068 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
101033084 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 83 0.95
30 2 0.02
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:101036871 original size:70 final size:71
Alignment explanation
Indices: 101036788--101036950 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
101036778 CGATTTGTCT
101036788 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
101036852 CTTTCA
66 CTTTCA
*
101036858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
101036923 CTTTCA
66 CTTTCA
101036929 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
101036951 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 27 0.30
71 64 0.70
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:101036988 original size:71 final size:70
Alignment explanation
Indices: 101036788--101036984 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
101036778 CGATTTGTCT
* * * *
101036788 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
101036852 CTTTCA
65 CTTTCA
* * * *
101036858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
101036923 CTTTCA
65 CTTTCA
* *
101036929 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
101036985 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 26 0.22
71 68 0.58
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:101044403 original size:69 final size:71
Alignment explanation
Indices: 101044321--101044482 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
101044311 CGATTTGTCT
101044321 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
101044384 CTTTCA
66 CTTTCA
101044390 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
101044455 CTTTCA
66 CTTTCA
101044461 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
101044483 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 27 0.30
70 24 0.26
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:101044520 original size:71 final size:70
Alignment explanation
Indices: 101044321--101044516 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
101044311 CGATTTGTCT
* * *
101044321 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
101044384 CTTTCA
65 CTTTCA
* * * *
101044390 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
101044455 CTTTCA
65 CTTTCA
* *
101044461 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
101044517 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 26 0.22
70 26 0.22
71 43 0.37
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:101046071 original size:30 final size:29
Alignment explanation
Indices: 101046004--101046147 Score: 125
Period size: 29 Copynumber: 4.9 Consensus size: 29
101045994 GCTATCGAAT
* *
101046004 AATGAAAAAGGATGGTGACGATCATCAAC
1 AATGAAAAGGGATGGTGACGACCATCAAC
101046033 AATGAAAAGGGATGGTGACGACCATCAA-
1 AATGAAAAGGGATGGTGACGACCATCAAC
** * *
101046061 AATGTGAAAAGGGATAACT-TCTG-CTATCAA-
1 AA--TGAAAAGGGAT-GGTGAC-GACCATCAAC
* *
101046091 ATTCTGAAAAGGGATGGTGATGACCATCAAC
1 A--ATGAAAAGGGATGGTGACGACCATCAAC
*
101046122 AATAAAAAGGGATGGTGACGACCATC
1 AATGAAAAGGGATGGTGACGACCATC
101046148 GAATTTCAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
28 2 0.02
29 50 0.55
30 36 0.40
31 3 0.03
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (29 bp):
AATGAAAAGGGATGGTGACGACCATCAAC
Found at i:101046119 original size:89 final size:88
Alignment explanation
Indices: 101045975--101046296 Score: 333
Period size: 89 Copynumber: 3.6 Consensus size: 88
101045965 TCATCGACTA
* * * * * * *
101045975 ATGAAAAGGGATAGCTTCAGCTATCGAATAATGAAAAAGGATGGTGACGATCATCAACAATGAAA
1 ATGAAAAAGGATAACTTCTGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAA
101046040 AGGGATGGTGACGACCATCAAAAT
66 AGGGATGGTGACGACCATC-AAAT
* * * * *
101046064 GTGAAAAGGGATAACTTCTGCTATCAAATTCTGAAAAGGGATGGTGATGACCATCAACAATAAAA
1 ATGAAAAAGGATAACTTCTGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAA
*
101046129 AGGGATGGTGACGACCATCGAAT
66 AGGGATGGTGACGACCATCAAAT
* * * * * * *
101046152 TTCAAAAAAGGATAACCTT-GGCTATCACATTATAAAAAGGGATGGTGACAACCATTAACAATGA
1 AT-GAAAAAGGATAA-CTTCTGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGA
* * * *
101046216 AAAAGGATGGTGACGACCTTTGAATT
64 AAAGGGATGGTGACGACC-ATCAAAT
* * * *
101046242 ATGAAAAAGGATAGC-TCTGGCTATCGAACTATGAAAAGGGATGGTGACAACCATC
1 ATGAAAAAGGATAACTTCT-GCTATCAAATTATGAAAAGGGATGGTGACGACCATC
101046297 GTGACTTTAC
Statistics
Matches: 192, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
87 1 0.01
88 5 0.03
89 179 0.93
90 7 0.04
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (88 bp):
ATGAAAAAGGATAACTTCTGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAA
AGGGATGGTGACGACCATCAAAT
Found at i:101046248 original size:29 final size:29
Alignment explanation
Indices: 101046180--101046253 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
101046170 TGGCTATCAC
101046180 ATTAT-AAAAAGGGATGGTGACAACCATTA
1 ATTATGAAAAA-GGATGGTGACAACCATTA
** * *
101046209 ACAATGAAAAAGGATGGTGACGACCTTTGA
1 ATTATGAAAAAGGATGGTGACAACCATT-A
101046239 ATTATGAAAAAGGAT
1 ATTATGAAAAAGGAT
101046254 AGCTCTGGCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 18 0.49
30 19 0.51
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (29 bp):
ATTATGAAAAAGGATGGTGACAACCATTA
Found at i:101052823 original size:28 final size:29
Alignment explanation
Indices: 101052784--101052908 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
101052774 AAGTCTACAT
* *
101052784 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
101052812 TCATTCCTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* ** *
101052841 ATATTTGTCTGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
101052870 ACTTTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
101052899 ACATTCATAT
1 ACATTCATAT
101052909 ACAAGCTTCC
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 20 0.25
29 59 0.75
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:101057306 original size:24 final size:24
Alignment explanation
Indices: 101057279--101057325 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
101057269 GGCCCAAAAC
*
101057279 CCCTTATAGAGCCCAAACAAGTCT
1 CCCTTACAGAGCCCAAACAAGTCT
101057303 CCCTTACAGAGCCCAAACAAGTC
1 CCCTTACAGAGCCCAAACAAGTC
101057326 GACATACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.36, G:0.13, T:0.17
Consensus pattern (24 bp):
CCCTTACAGAGCCCAAACAAGTCT
Found at i:101057368 original size:28 final size:28
Alignment explanation
Indices: 101057336--101057413 Score: 113
Period size: 29 Copynumber: 2.8 Consensus size: 28
101057326 GACATACATA
*
101057336 CATATGGCCCACTAGGCCCAATC-TCATT
1 CATATGGCCCATTAGGCCCAATCAT-ATT
101057364 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCC-AATCATATT
*
101057393 CGTATGGCCCATTAGGCCCAA
1 CATATGGCCCATTAGGCCCAA
101057414 ATCACTTTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 20 0.43
29 25 0.54
30 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCATATT
Found at i:101057398 original size:29 final size:30
Alignment explanation
Indices: 101057370--101057446 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
101057360 CATTCATATG
*
101057370 GCCCATTAGGCCCAAATCAT-ATTCGTATG
1 GCCCATTAGGCCCAAATCATCATTCATATG
* *
101057399 GCCCATTAGGCCCAAATCA-CTTTCATA-C
1 GCCCATTAGGCCCAAATCATCATTCATATG
*
101057427 GACCAGTTAGGCCCAAATCA
1 GCCCA-TTAGGCCCAAATCA
101057447 CTTCTATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 4 0.10
29 38 0.90
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (30 bp):
GCCCATTAGGCCCAAATCATCATTCATATG
Found at i:101057444 original size:58 final size:57
Alignment explanation
Indices: 101057338--101057446 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 57
101057328 CATACATACA
* * *
101057338 TATGGCCCACTAGGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATCATATTCG
1 TATGGCCCACTAGGCCCAATCACATTCATATCGACCATTAGGCCCAAATCATATTCG
* *
101057395 TATGGCCCATTAGGCCCAAATCACTTTCATA-CGACCAGTTAGGCCCAAATCA
1 TATGGCCCACTAGGCCC-AATCACATTCATATCGACCA-TTAGGCCCAAATCA
101057447 CTTCTATATA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
57 20 0.44
58 25 0.56
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATCGACCATTAGGCCCAAATCATATTCG
Found at i:101057689 original size:16 final size:16
Alignment explanation
Indices: 101057668--101057707 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
101057658 GCCGAACTTT
101057668 CAGCTTTTCAGCATTG
1 CAGCTTTTCAGCATTG
** *
101057684 CAGCTTTTTGGCATTT
1 CAGCTTTTCAGCATTG
101057700 CAGCTTTT
1 CAGCTTTT
101057708 ACCGATCTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (16 bp):
CAGCTTTTCAGCATTG
Found at i:101061118 original size:80 final size:80
Alignment explanation
Indices: 101061034--101061182 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
101061024 TATGGTAACC
* * * *
101061034 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
101061098 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
101061114 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
101061179 CCGG
66 CCGG
101061183 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:101061124 original size:40 final size:38
Alignment explanation
Indices: 101061075--101061182 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
101061065 ATCACGATTT
*
101061075 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
101061115 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
101061155 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
101061183 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:101061203 original size:40 final size:41
Alignment explanation
Indices: 101061154--101061231 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
101061144 TGTAGCCACT
* *
101061154 AGCACAATTGCCTTCGGGTCTTAACCCGGTTAT-AATTTCC
1 AGCACAATTGCCTTCGGGGCTTAACCCGGATATCAATTTCC
* * *
101061194 AGCATAATTGTCTTCGGGGCTTAGCCCGGATATCAATT
1 AGCACAATTGCCTTCGGGGCTTAACCCGGATATCAATT
101061232 CAATTTCTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (41 bp):
AGCACAATTGCCTTCGGGGCTTAACCCGGATATCAATTTCC
Found at i:101069165 original size:80 final size:80
Alignment explanation
Indices: 101069081--101069229 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
101069071 TATGGTAACC
* * * *
101069081 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
101069145 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
101069161 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
101069226 CCGG
66 CCGG
101069230 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:101069171 original size:40 final size:38
Alignment explanation
Indices: 101069122--101069229 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
101069112 ATCACGATTT
*
101069122 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
101069162 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
101069202 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
101069230 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:101072337 original size:40 final size:40
Alignment explanation
Indices: 101072292--101072458 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
101072282 CGGAATATAA
101072292 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
101072332 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
101072372 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
101072412 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
101072451 CCGGATAT
1 CCGGATAT
101072459 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:101080334 original size:40 final size:40
Alignment explanation
Indices: 101080289--101080455 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
101080279 CGGAATATAA
101080289 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
101080329 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
101080369 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
101080409 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
101080448 CCGGATAT
1 CCGGATAT
101080456 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:101088828 original size:68 final size:68
Alignment explanation
Indices: 101088748--101088883 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
101088738 ATCAAACATG
101088748 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATAGTTT
1 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATAGTTT
101088813 TAT
66 TAT
*
101088816 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATGGTTT
1 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATAGTTT
101088881 TAT
66 TAT
101088884 AATAATTATG
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (68 bp):
GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATAGTTT
TAT
Found at i:101093810 original size:45 final size:45
Alignment explanation
Indices: 101093746--101093919 Score: 170
Period size: 45 Copynumber: 3.9 Consensus size: 45
101093736 AATTTGATTC
* * *
101093746 AAATGAGTAAGACCATAGTTGAAAGATGCTATGGCATTAGGATAA
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATAA
* * * * * ***
101093791 AAATGAGTAAGACCATAGTTGAAAGACACTATGGAACCATGACGG
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATAA
* * *
101093836 AAGTGAGTAAGACCATGGCTGAAAGATGCTATGGCATCATGG-TAA
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCA-GGATAA
* * * *
101093881 ATAGGACTAAGACCATAGCTGAAAGACGTTATGGCATCA
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCA
101093920 TTTGATAGTT
Statistics
Matches: 101, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
45 100 0.99
46 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATAA
Found at i:101120312 original size:35 final size:35
Alignment explanation
Indices: 101120266--101120334 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
101120256 GGTTGACCTG
101120266 AATGCATGTTTGACTGTTACTATTTACTGCATGCT
1 AATGCATGTTTGACTGTTACTATTTACTGCATGCT
101120301 AATGCATGTTTGACTGTTACTATTTACTGCATGC
1 AATGCATGTTTGACTGTTACTATTTACTGCATGC
101120335 CATGTTATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (35 bp):
AATGCATGTTTGACTGTTACTATTTACTGCATGCT
Found at i:101123617 original size:43 final size:43
Alignment explanation
Indices: 101123536--101123622 Score: 99
Period size: 43 Copynumber: 2.0 Consensus size: 43
101123526 AAATCATACA
**
101123536 ATGCCAACGTCCCAGACGTGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
101123579 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATATCG
101123622 A
1 A
101123623 AATCAAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
42 3 0.08
43 34 0.89
44 1 0.03
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:101125154 original size:28 final size:27
Alignment explanation
Indices: 101125091--101125160 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
101125081 ATAGTGAGTC
101125091 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
101125118 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
101125146 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
101125161 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:101135332 original size:3 final size:3
Alignment explanation
Indices: 101135316--101135402 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
101135306 TTATATCATT
* *
101135316 TTA TTA -TA TATA TTA TTCA TTA -TA TTA TTT TTA TTT TTA TTA TATA
1 TTA TTA TTA T-TA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
101135362 TTA -TA TTA -TA TTA TTA TTTA TTA TTTA TAA TTTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA -TTA TTA TTA T
101135403 GTACAATTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
2 8 0.12
3 43 0.63
4 17 0.25
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:101135339 original size:12 final size:11
Alignment explanation
Indices: 101135316--101135402 Score: 83
Period size: 10 Copynumber: 7.9 Consensus size: 11
101135306 TTATATCATT
101135316 TTATTATATATA
1 TTATTAT-TATA
101135328 TTATTCATTATA
1 TTATT-ATTATA
* *
101135340 TTATTTTTATTT
1 TTATTATTA-TA
101135352 TTATTA-TATA
1 TTATTATTATA
101135362 TTA-TATTATA
1 TTATTATTATA
101135372 TTATTATT-TA
1 TTATTATTATA
*
101135382 TTATTTATAAT-
1 TTA-TTATTATA
101135393 TTATTATTAT
1 TTATTATTAT
101135403 GTACAATTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
9 2 0.03
10 22 0.35
11 16 0.25
12 21 0.33
13 2 0.03
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (11 bp):
TTATTATTATA
Found at i:101135349 original size:27 final size:26
Alignment explanation
Indices: 101135306--101135402 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 26
101135296 TTATAATATG
* *
101135306 TTATATCATTTTATTATATATATTATTCA
1 TTATATTATATTATTAT-T-TATTATT-A
*
101135335 TTATATTATTTTTATT-TTTATTATATA
1 TTATATTA-TATTATTATTTATTAT-TA
101135362 TTATATTATATTATTATTTATTA-T-
1 TTATATTATATTATTATTTATTATTA
101135386 TTATAATT-TATTATTAT
1 TTAT-ATTATATTATTAT
101135403 GTACAATTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 13
0.81 0.03 0.17
Matches are distributed among these distances:
24 13 0.21
25 4 0.06
26 6 0.10
27 22 0.35
28 2 0.03
29 8 0.13
30 7 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (26 bp):
TTATATTATATTATTATTTATTATTA
Found at i:101135365 original size:34 final size:35
Alignment explanation
Indices: 101135322--101135402 Score: 114
Period size: 34 Copynumber: 2.4 Consensus size: 35
101135312 CATTTTATTA
101135322 TATATATTATTCATTATATTATT-TTTATT-TTTAT
1 TATATATTATT-ATTATATTATTATTTATTATTTAT
101135356 TATATATTA-TATTATATTATTATTTATTATTTAT
1 TATATATTATTATTATATTATTATTTATTATTTAT
* *
101135390 AATTTATTATTAT
1 TATATATTATTAT
101135403 GTACAATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
32 11 0.26
33 7 0.17
34 21 0.50
35 3 0.07
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (35 bp):
TATATATTATTATTATATTATTATTTATTATTTAT
Found at i:101135400 original size:17 final size:17
Alignment explanation
Indices: 101135326--101135417 Score: 57
Period size: 17 Copynumber: 5.4 Consensus size: 17
101135316 TTATTATATA
*
101135326 TATTATTCATTATATTATT
1 TATTATT-ATT-TATAATT
* *
101135345 T-TTATT-TTTATTATA
1 TATTATTATTTATAATT
*
101135360 TATTA-TA-TTATATTAT
1 TATTATTATTTATAAT-T
101135376 TATTTATTATTTATAATT
1 TA-TTATTATTTATAATT
* *
101135394 TATTATTATGTACAATT
1 TATTATTATTTATAATT
*
101135411 TTTTATT
1 TATTATT
101135418 TTTTTAAATA
Statistics
Matches: 59, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
15 13 0.22
16 7 0.12
17 22 0.37
18 10 0.17
19 7 0.12
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (17 bp):
TATTATTATTTATAATT
Found at i:101135411 original size:24 final size:24
Alignment explanation
Indices: 101135362--101135411 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
101135352 TTATTATATA
* **
101135362 TTATATTATATTATTATTTATTAT
1 TTATATTATATTATTATGTACAAT
101135386 TTATAATT-TATTATTATGTACAAT
1 TTAT-ATTATATTATTATGTACAAT
101135410 TT
1 TT
101135412 TTTATTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
TTATATTATATTATTATGTACAAT
Found at i:101147454 original size:44 final size:44
Alignment explanation
Indices: 101147397--101148331 Score: 1202
Period size: 44 Copynumber: 21.4 Consensus size: 44
101147387 ACCAATATTG
* *
101147397 GATTTGACGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * *
101147441 GATTTGGCATCTCTGTATTAACAGAGAGTAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * * *
101147485 CATTTCGCGTCTCTGTATTGACAAAGGGTAGATTGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
*
101147529 GATTTGGCGTCTCTGTATTGACAGAGGGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* *
101147573 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATTGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * *
101147617 GATTTGGCGTCTCTGTATCGACGGGGAGCAGATCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
*
101147661 GATTTGGTGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
101147705 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * *
101147749 GATTTGGCGTCTCTGTATCGACGGGGAGCAGATCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * *
101147793 GATTTGGTGTCTCTGTATTGACAGACAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * *
101147837 GATTTGGCGTCTTTGTATTGACAGAGAGCAGATTGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * *
101147881 GATTTGGCGTCTCTGTATCGACGGGGAGCAGATCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
*
101147925 GATTTGGTGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
*
101147969 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * *
101148013 GATTTGGCGTCTCTGTATCGACAGGGAGCAGATCAAAGATTA-TA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGA-TAGCA
*
101148057 GATTTGGTGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * ** * * * *
101148101 GATTTGGCATCTCTGTATGGATGGGGAACAAATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * * *
101148145 GATCTGACAT-TCT-T-GT-ACCGA-AGCAGA-CTGAATATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATC-GAAGATAGCA
*
101148184 GATTTGGCGTCTCTGTATTGACAGAGAGCATATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* *
101148228 GATTTGGTGTCTCTGTATTGACAGAG-GACAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAG-CAGATCGAAGATAGCA
* * * * *
101148272 GATTTGGGGTCTCTGTATTAATAGAGAGCAGATCAAAGATTGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
101148316 GATTTGGCGTCTCTGT
1 GATTTGGCGTCTCTGT
101148332 GCTTCATGGG
Statistics
Matches: 772, Mismatches: 108, Indels: 22
0.86 0.12 0.02
Matches are distributed among these distances:
38 1 0.00
39 19 0.02
40 5 0.01
41 1 0.00
42 2 0.00
43 10 0.01
44 730 0.95
45 4 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
Found at i:101149838 original size:29 final size:27
Alignment explanation
Indices: 101149794--101149849 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
101149784 TTTTAGTCAT
101149794 TTTTAAATTTTTTATACAATTTATTTA
1 TTTTAAATTTTTTATACAATTTATTTA
* *
101149821 TTTTAAATATTTTATA-TA-TTATTTA
1 TTTTAAATTTTTTATACAATTTATTTA
101149846 TTTT
1 TTTT
101149850 TACTATAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 11 0.41
26 1 0.04
27 15 0.56
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (27 bp):
TTTTAAATTTTTTATACAATTTATTTA
Found at i:101149979 original size:12 final size:11
Alignment explanation
Indices: 101149940--101150040 Score: 77
Period size: 10 Copynumber: 9.3 Consensus size: 11
101149930 TGCTTTATAA
101149940 TATATT-TTAT
1 TATATTATTAT
* * *
101149950 CATTTTAATAT
1 TATATTATTAT
101149961 ATATATTATTCAT
1 -TATATTATT-AT
*
101149974 TATATTATTTT
1 TATATTATTAT
*
101149985 TATTTTTATTA-
1 TA-TATTATTAT
101149996 TATATTA-TAT
1 TATATTATTAT
101150006 TATATTATTAT
1 TATATTATTAT
101150017 T-TATTATTTAT
1 TATATTA-TTAT
*
101150028 AAT-TTATTAT
1 TATATTATTAT
101150038 TAT
1 TAT
101150041 GTACAATTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
9 2 0.03
10 26 0.37
11 19 0.27
12 22 0.31
13 2 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (11 bp):
TATATTATTAT
Found at i:101149982 original size:3 final size:3
Alignment explanation
Indices: 101149964--101150040 Score: 61
Period size: 3 Copynumber: 25.0 Consensus size: 3
101149954 TTAATATATA
* *
101149964 TAT TAT TCAT TA- TAT TAT TTT TAT TTT TAT TAT ATAT TA- TAT TA-
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
101150008 TAT TAT TATT TAT TATT TAT AATT TAT TAT TAT
1 TAT TAT TA-T TAT TA-T TAT TA-T TAT TAT TAT
101150041 GTACAATTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
2 6 0.10
3 40 0.67
4 14 0.23
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:101149994 original size:27 final size:26
Alignment explanation
Indices: 101149964--101150040 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
101149954 TTAATATATA
*
101149964 TATTATTCATTATATTATTTTTATT-TT
1 TATTATT-ATTATATTA-TATTATTATT
101149991 TATTATATATTATATTATATTATTATT
1 TATTAT-TATTATATTATATTATTATT
101150018 TATTA-T-TTATAATT-TATTATTAT
1 TATTATTATTAT-ATTATATTATTAT
101150041 GTACAATTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
24 13 0.28
25 4 0.09
26 6 0.13
27 22 0.48
28 1 0.02
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (26 bp):
TATTATTATTATATTATATTATTATT
Found at i:101150027 original size:34 final size:33
Alignment explanation
Indices: 101149942--101150037 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 33
101149932 CTTTATAATA
*
101149942 TATTTTATCATTTTAATATATATATTATTCATTATAT
1 TATTTT-T-ATTTTTAT-TATATATTA-TCATTATAT
101149979 TATTTTTATTTTTATTATATATTAT-ATTATAT
1 TATTTTTATTTTTATTATATATTATCATTATAT
* *
101150011 TATTATTTATTATTTATAATTTATTAT
1 TATT-TTTATT-TTTATTATATATTAT
101150038 TATGTACAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
32 11 0.20
33 7 0.13
34 22 0.41
35 7 0.13
36 1 0.02
37 6 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (33 bp):
TATTTTTATTTTTATTATATATTATCATTATAT
Done.