Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 325 of 438
Found at i:101763409 original size:42 final size:42
Alignment explanation
Indices: 101763363--101763509 Score: 170
Period size: 42 Copynumber: 3.3 Consensus size: 42
101763353 CATAGTTTAA
*
101763363 CTATGGTTTTACACATCTTCACATAAT-GATGCCATAGCCCAG
1 CTATGGTCTTACACATCTTCACAT-ATCGATGCCATAGCCCAG
* * * *
101763405 CTATGGTCTTACACATATTTATATATCGATGCCATAGCCCAA
1 CTATGGTCTTACACATCTTCACATATCGATGCCATAGCCCAG
101763447 CTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT--C-T-TCACATATCGATGCCATAGCCCAG
101763496 CTATGGTCTTACAC
1 CTATGGTCTTACAC
101763510 GAATCACATA
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
41 2 0.02
42 48 0.55
45 2 0.02
48 1 0.01
49 35 0.40
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (42 bp):
CTATGGTCTTACACATCTTCACATATCGATGCCATAGCCCAG
Found at i:101763604 original size:47 final size:46
Alignment explanation
Indices: 101763390--101763599 Score: 205
Period size: 47 Copynumber: 4.6 Consensus size: 46
101763380 TTCACATAAT
* ** * *
101763390 GATGCCATAGCCCAGCTATGGTCTTACAC--AT-ATTTAT-ATATC
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
*
101763432 GATGCCATAGCCCA-ACTATGGTCTTACACGTAATCACATATCACATATC
1 GATGCCATAGCCCAGA-TATGGTCTTACACGT-ATCACATATCAC--ACC
* * * *
101763481 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
* * * *
101763527 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTATCACATATCACACC
*
101763574 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
101763600 TACAGAAATC
Statistics
Matches: 141, Mismatches: 17, Indels: 15
0.82 0.10 0.09
Matches are distributed among these distances:
42 27 0.19
45 2 0.01
46 31 0.22
47 39 0.28
48 11 0.08
49 31 0.22
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
Found at i:101763619 original size:93 final size:94
Alignment explanation
Indices: 101763390--101763599 Score: 229
Period size: 95 Copynumber: 2.3 Consensus size: 94
101763380 TTCACATAAT
* ** *
101763390 GATGCCATAGCCCAGCTATGGTCTTACAC--AT-ATTTATAT-A-TCGATGCCATAGCCCAACTA
1 GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACT-GATGCCATAGCCCAACTA
* *
101763450 TGGTCTTACACGTAATCACATATCACATATC
65 TGGTCTTACACGTAAGCACATATCACA-ACC
* *
101763481 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACTGATGCCATATCCCAGA-TA
1 GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCA-ACTA
* *
101763545 TGGTCTTATACAGT-AGCATATATCAC-ACC
65 TGGTCTTACAC-GTAAGCACATATCACAACC
*
101763574 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
101763600 TACAGAAATC
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
91 29 0.28
93 28 0.27
94 5 0.05
95 36 0.35
96 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (94 bp):
GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAACTAT
GGTCTTACACGTAAGCACATATCACAACC
Found at i:101763664 original size:31 final size:31
Alignment explanation
Indices: 101763627--101763769 Score: 205
Period size: 31 Copynumber: 4.6 Consensus size: 31
101763617 ACTTGTAGTT
* * *
101763627 GAAGCTACCACTATTCACTAATCAGGTAGCT
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
* *
101763658 GGAGCTACCATTTTTCACTGATCAGGTAGCC
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
* * *
101763689 GGAGATACCACTTTTCACTGATCAGGTAGCA
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
101763720 GAAGCTACCACTTTTCACTGATCAGGTAGCC
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
*
101763751 AAAGCTACCACTTTTCACT
1 GAAGCTACCACTTTTCACT
101763770 TGTCATTTGT
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 100 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
GAAGCTACCACTTTTCACTGATCAGGTAGCC
Found at i:101763844 original size:50 final size:51
Alignment explanation
Indices: 101763745--101763871 Score: 184
Period size: 50 Copynumber: 2.5 Consensus size: 51
101763735 CACTGATCAG
* * * *
101763745 GTAGCCAAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
* *
101763796 GTAGCCGAAGCTATTACTTATCACTT-TCATTTGTCCTTGATTAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
*
101763846 GTAGCCGGAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
101763872 ATTGCCATGG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
50 46 0.68
51 22 0.32
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
Found at i:101769443 original size:51 final size:51
Alignment explanation
Indices: 101769302--101769443 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 51
101769292 TGGATGCCCG
* * *
101769302 GTGGCCTACACATAGTACTACCCTTGT-AGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTACACATAGTACCACACTTGTGA-TCAAAGCTATCTTCTTCACAAA
* * * *
101769353 GTGGCCTTCACATAGTACCACACTTGTGACCAAATCTATCTT-TTACACATA
1 GTGGCCTACACATAGTACCACACTTGTGATCAAAGCTATCTTCTT-CACAAA
* * *
101769404 GTGGCCTACACTTAGTACCACACATGTGATCGAAGCTATC
1 GTGGCCTACACATAGTACCACACTTGTGATCAAAGCTATC
101769444 GGGTACGCGT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.03
51 73 0.96
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (51 bp):
GTGGCCTACACATAGTACCACACTTGTGATCAAAGCTATCTTCTTCACAAA
Found at i:101771270 original size:40 final size:40
Alignment explanation
Indices: 101771208--101771428 Score: 286
Period size: 40 Copynumber: 5.6 Consensus size: 40
101771198 ATTCGGATTG
101771208 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
101771247 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * **
101771287 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGAAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
101771327 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
101771367 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
101771407 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
101771429 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 27 0.17
40 131 0.83
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:101773526 original size:40 final size:40
Alignment explanation
Indices: 101773473--101773695 Score: 380
Period size: 40 Copynumber: 5.6 Consensus size: 40
101773463 ACTACTTGCT
101773473 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCA
101773513 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
101773553 CAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
101773592 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
101773632 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
101773672 CAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
101773696 ATTATCATCC
Statistics
Matches: 176, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
39 40 0.23
40 134 0.76
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:101773590 original size:79 final size:79
Alignment explanation
Indices: 101773473--101773695 Score: 376
Period size: 79 Copynumber: 2.8 Consensus size: 79
101773463 ACTACTTGCT
*
101773473 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCGGA-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
101773538 ATATAGTAACTCGCA
65 ATATAGTAACTCGCA
*
101773553 CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
1 CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
101773618 TATAGTAACTCGCA
66 TATAGTAACTCGCA
* *
101773632 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
101773696 ATTATCATCC
Statistics
Matches: 136, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
79 74 0.54
80 62 0.46
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TATAGTAACTCGCA
Found at i:101773652 original size:119 final size:119
Alignment explanation
Indices: 101773441--101773693 Score: 395
Period size: 119 Copynumber: 2.1 Consensus size: 119
101773431 ACCCAAGCAT
* * *
101773441 CTTCGGGATTTAGCCGAATATAACTACTTGCTCAAATGCCTTCGGGACTTAGCCCGATTATAGTA
1 CTTCGGGACTTAGCCGAATATAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
*
101773506 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGC
66 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGC
* *
101773560 CTTCGGGACTTAGCCGGATAT-AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA-TATAG
1 CTTCGGGACTTAGCCGAATATAACT-ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTATAG
*
101773623 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGC
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGC
101773679 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
101773694 CGATTATCAT
Statistics
Matches: 124, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
118 2 0.02
119 118 0.95
120 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
CTTCGGGACTTAGCCGAATATAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGC
Found at i:101781253 original size:28 final size:27
Alignment explanation
Indices: 101781190--101781259 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
101781180 ATAGTGAGTC
101781190 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
101781217 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
101781245 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
101781260 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:101784776 original size:40 final size:39
Alignment explanation
Indices: 101784721--101784854 Score: 196
Period size: 40 Copynumber: 3.4 Consensus size: 39
101784711 ACCCAAGCAT
101784721 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGC
101784761 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGC
* * * * *
101784801 CTTCGTGACTTAGACCGGAATTAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGTA-TAGTAACTCGCACAAATGC
101784841 CTTCGGGACTTAGC
1 CTTCGGGACTTAGC
101784855 TCAGTTATCA
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 84 0.99
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGC
Found at i:101793662 original size:29 final size:29
Alignment explanation
Indices: 101793629--101793741 Score: 181
Period size: 29 Copynumber: 3.9 Consensus size: 29
101793619 CTATATTCAC
* *
101793629 ATGGCCTATTAGGCCCAAGTCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
101793658 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
101793687 GTGGCCCATTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
101793716 GTGGCCCATTAGGCCCAAATCACATT
1 ATGGCCCATTAGGCCCAAATCACATT
101793742 ACATTCATGC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 79 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:101795500 original size:39 final size:39
Alignment explanation
Indices: 101795387--101795581 Score: 230
Period size: 39 Copynumber: 4.9 Consensus size: 39
101795377 CTCGTTCAAA
* * * *
101795387 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
101795428 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
*
101795467 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAAT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * *
101795506 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
101795545 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
101795582 TTCATACACA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
39 100 0.72
40 39 0.28
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:101795550 original size:78 final size:79
Alignment explanation
Indices: 101795387--101795570 Score: 262
Period size: 78 Copynumber: 2.3 Consensus size: 79
101795377 CTCGTTCAAA
* * *
101795387 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
101795452 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* * * *
101795467 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
* *
101795531 ACAATTCGCACATT
66 ACAACTCGCACAAT
*
101795545 TGCCTTCGGGCTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCA
101795571 CAATTCGCAC
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 51 0.54
79 33 0.35
80 10 0.11
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:101795583 original size:39 final size:39
Alignment explanation
Indices: 101795419--101795581 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
101795409 TATGATAACC
* * *
101795419 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
101795459 CGCACAATCGCCTTCGGGCTTAGCCCGGATATCA-TATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT-T
101795498 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
101795537 CGCACATTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
101795576 CGCACA
1 CGCACA
101795582 TTCATACACA
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 94 0.83
40 18 0.16
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:101803511 original size:39 final size:39
Alignment explanation
Indices: 101803398--101803592 Score: 230
Period size: 39 Copynumber: 4.9 Consensus size: 39
101803388 CTCGTTCAAA
* * * *
101803398 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
101803439 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
*
101803478 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAAT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * *
101803517 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
101803556 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
101803593 TTCATACACA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
39 100 0.72
40 39 0.28
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:101803561 original size:78 final size:79
Alignment explanation
Indices: 101803398--101803581 Score: 262
Period size: 78 Copynumber: 2.3 Consensus size: 79
101803388 CTCGTTCAAA
* * *
101803398 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
101803463 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* * * *
101803478 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
* *
101803542 ACAATTCGCACATT
66 ACAACTCGCACAAT
*
101803556 TGCCTTCGGGCTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCA
101803582 CAATTCGCAC
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 51 0.54
79 33 0.35
80 10 0.11
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:101803594 original size:39 final size:39
Alignment explanation
Indices: 101803430--101803592 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
101803420 TATGATAACC
* * *
101803430 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
101803470 CGCACAATCGCCTTCGGGCTTAGCCCGGATATCA-TATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT-T
101803509 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
101803548 CGCACATTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
101803587 CGCACA
1 CGCACA
101803593 TTCATACACA
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 94 0.83
40 18 0.16
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:101807093 original size:11 final size:11
Alignment explanation
Indices: 101807077--101807112 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
101807067 CAATGCCATT
101807077 AGCTTAGTATA
1 AGCTTAGTATA
101807088 AGCTTAGTATA
1 AGCTTAGTATA
101807099 AGCTTAGTATA
1 AGCTTAGTATA
101807110 AGC
1 AGC
101807113 CTATACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (11 bp):
AGCTTAGTATA
Found at i:101808516 original size:28 final size:28
Alignment explanation
Indices: 101808480--101808554 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 28
101808470 GTGTTAACTA
* *
101808480 GGCCTTAGCCCA-TATCAATATTAATCTG
1 GGCCATAGCCCATTA-CAATATCAATCTG
* *
101808508 GGCCATAGCCCCTTACAGTATCAATCTG
1 GGCCATAGCCCATTACAATATCAATCTG
*
101808536 GGCCGTAGCCCTATTACAA
1 GGCCATAGCCC-ATTACAA
101808555 GTCGAGATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 31 0.82
29 7 0.18
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (28 bp):
GGCCATAGCCCATTACAATATCAATCTG
Found at i:101810065 original size:14 final size:14
Alignment explanation
Indices: 101810040--101810082 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
101810030 GCTATAGGGG
*
101810040 AGAA-AAGAAAAACA
1 AGAAGAAGAAAAA-T
101810054 AGAAGAAGAAAAAT
1 AGAAGAAGAAAAAT
101810068 AGAAGAAGAGAAAAT
1 AGAAGAAGA-AAAAT
101810083 GAATATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.05
Consensus pattern (14 bp):
AGAAGAAGAAAAAT
Found at i:101811307 original size:3 final size:3
Alignment explanation
Indices: 101811299--101811343 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
101811289 AAACCTACTA
101811299 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
101811344 TAAAACATCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:101812359 original size:14 final size:14
Alignment explanation
Indices: 101812340--101812369 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
101812330 ATACGACCTT
101812340 AATATCACACCGTA
1 AATATCACACCGTA
101812354 AATATCACACCGTA
1 AATATCACACCGTA
101812368 AA
1 AA
101812370 ATTTCTTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.27, G:0.07, T:0.20
Consensus pattern (14 bp):
AATATCACACCGTA
Found at i:101813184 original size:20 final size:21
Alignment explanation
Indices: 101813129--101813246 Score: 86
Period size: 20 Copynumber: 5.9 Consensus size: 21
101813119 ATGCAAAAAT
* *
101813129 AGGGGCACCA-AAGCGCAATC
1 AGGGGCACCAGATGTGCAATC
* **
101813149 AGGAGCATGAG-TGTGCAATC
1 AGGGGCACCAGATGTGCAATC
* *
101813169 ATGGGCACCAGA-GTGCAGTC
1 AGGGGCACCAGATGTGCAATC
* *
101813189 AGGGGCACGA-ATGTGCTATC
1 AGGGGCACCAGATGTGCAATC
* * *
101813209 AGAGGCACTAGA-GTGCATTC
1 AGGGGCACCAGATGTGCAATC
101813229 AGGGGCA-CAGATGTGCAA
1 AGGGGCACCAGATGTGCAA
101813247 ATAGAGACAC
Statistics
Matches: 72, Mismatches: 21, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
19 4 0.06
20 67 0.93
21 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.34, T:0.15
Consensus pattern (21 bp):
AGGGGCACCAGATGTGCAATC
Found at i:101813191 original size:40 final size:39
Alignment explanation
Indices: 101813131--101813246 Score: 108
Period size: 40 Copynumber: 2.9 Consensus size: 39
101813121 GCAAAAATAG
* * * *
101813131 GGGCACCAAAGCGCAATCAGGAGCATGAGTGTGCAATCA
1 GGGCACCAGAGTGCAATCAGGAGCACGAATGTGCAATCA
* * *
101813170 TGGGCACCAGAGTGCAGTCAGGGGCACGAATGTGCTATCA
1 -GGGCACCAGAGTGCAATCAGGAGCACGAATGTGCAATCA
* * *
101813210 GAGGCACTAGAGTGCATTCAGGGGCAC-AGATGTGCAA
1 G-GGCACCAGAGTGCAATCAGGAGCACGA-ATGTGCAA
101813247 ATAGAGACAC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.03
40 62 0.97
ACGTcount: A:0.29, C:0.22, G:0.34, T:0.16
Consensus pattern (39 bp):
GGGCACCAGAGTGCAATCAGGAGCACGAATGTGCAATCA
Found at i:101813346 original size:40 final size:40
Alignment explanation
Indices: 101813230--101813356 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
101813220 AGTGCATTCA
* *
101813230 GGGGCACAGA-TGTGCAAATAGAGACACCAAAGTGTTCA-T
1 GGGGCACA-ATTGTGCAAATAGGGACACCAAAGTGTTTACT
* * * *
101813269 AGGGGTACAGTTGTGCAAACAGGGACACCAATGTGTTTACT
1 -GGGGCACAATTGTGCAAATAGGGACACCAAAGTGTTTACT
* * * *
101813310 GGGGCACAATTGTGAAAATAGGGACATCAAAGTGTTTTCA
1 GGGGCACAATTGTGCAAATAGGGACACCAAAGTGTTTACT
101813350 GGGGCAC
1 GGGGCAC
101813357 CGAGGTGCAA
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 70 0.99
41 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (40 bp):
GGGGCACAATTGTGCAAATAGGGACACCAAAGTGTTTACT
Found at i:101813937 original size:17 final size:17
Alignment explanation
Indices: 101813915--101813953 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
101813905 AAATTTCCTT
101813915 ATCAATTCTAA-CATTTA
1 ATCAATTC-AATCATTTA
*
101813932 ATCAATTCAATCCTTTA
1 ATCAATTCAATCATTTA
101813949 ATCAA
1 ATCAA
101813954 AAAGTAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (17 bp):
ATCAATTCAATCATTTA
Found at i:101814776 original size:55 final size:55
Alignment explanation
Indices: 101814692--101814821 Score: 197
Period size: 55 Copynumber: 2.4 Consensus size: 55
101814682 GAGTGAGATG
** *
101814692 CTTACAAAAGCTCATGCTCTCAAAGGAGAATGTAGAGTGGGACTTATAAAAAAAA
1 CTTACAAAAGCTCATGCTCTCAAAGGAGAACATAGAGTGAGACTTATAAAAAAAA
* *
101814747 CTTACAAAAGCTCATGCTCTTAAAGGAGAACATAGAGTGAGACTTATAAAAAACA
1 CTTACAAAAGCTCATGCTCTCAAAGGAGAACATAGAGTGAGACTTATAAAAAAAA
* *
101814802 CTCACAAAAGCCCATGCTCT
1 CTTACAAAAGCTCATGCTCT
101814822 AAGAAGCACG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (55 bp):
CTTACAAAAGCTCATGCTCTCAAAGGAGAACATAGAGTGAGACTTATAAAAAAAA
Found at i:101814849 original size:53 final size:55
Alignment explanation
Indices: 101814695--101814849 Score: 134
Period size: 55 Copynumber: 2.9 Consensus size: 55
101814685 TGAGATGCTT
* * * *** * * *
101814695 ACAAAAGCTCATGCTCTCAAAGGAGAATGTAGAGTGGGACTTATAAAAAAAACTT
1 ACAAAAGCCCATGCTCTTAAAGAAGAACACAGAGTGAGACTCATAAAAAAAACTC
* * * * *
101814750 ACAAAAGCTCATGCTCTTAAAGGAGAACATAGAGTGAGACTTATAAAAAACACTC
1 ACAAAAGCCCATGCTCTTAAAGAAGAACACAGAGTGAGACTCATAAAAAAAACTC
* * * *
101814805 ACAAAAGCCCATGCTC-T-AAGAAGCACGCAGAGTTAGGCTCATAAA
1 ACAAAAGCCCATGCTCTTAAAGAAGAACACAGAGTGAGACTCATAAA
101814850 GGCTCATGCT
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 21 0.24
54 1 0.01
55 64 0.74
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (55 bp):
ACAAAAGCCCATGCTCTTAAAGAAGAACACAGAGTGAGACTCATAAAAAAAACTC
Found at i:101814869 original size:150 final size:150
Alignment explanation
Indices: 101814649--101814934 Score: 362
Period size: 150 Copynumber: 1.9 Consensus size: 150
101814639 CATCACAAAT
* *
101814649 CTCACAAAAGCCCATGCTCTCAAGGAGCACACAGAGTGAGATGCTTACAAAAGCTCATGCTCTCA
1 CTCACAAAAGCCCATGCTCTCAAGAAGCACACAGAGTGAGA-GCTCACAAAAGCTCATGCTCTCA
** * * *
101814714 AAGGAG-AATGTAGAGTGGGACTTATAAAAAAAACTTACAAAAGCTCATGCTCTTAAAGGAGAAC
65 AAGGAGCAA-ACAGAGTGAGACTTAT-AAAAAAACTCACAAAAGCCCATGCTC-TAAAGGAGAAC
101814778 ATAGAGTGAGACTTATAAAAAACA
127 ATAGAGTGAGACTTATAAAAAACA
* * * *
101814802 CTCACAAAAGCCCATGCTCT-AAGAAGCACGCAGAGTTAG-GCTCATAAAGGCTCATGCTCTCAA
1 CTCACAAAAGCCCATGCTCTCAAGAAGCACACAGAGTGAGAGCTCACAAAAGCTCATGCTCTCAA
* * * * * *
101814865 AGGAGCAAACAGAGTGAGACTTATCACAAAACTCACAAGAGCCCATGCTCTCAAGGGGCACATAG
66 AGGAGCAAACAGAGTGAGACTTATAAAAAAACTCACAAAAGCCCATGCTCTAAAGGAGAACATAG
101814930 AGTGA
131 AGTGA
101814935 AGCTAACAAA
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
148 17 0.15
149 21 0.18
150 39 0.34
151 2 0.02
152 16 0.14
153 20 0.17
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (150 bp):
CTCACAAAAGCCCATGCTCTCAAGAAGCACACAGAGTGAGAGCTCACAAAAGCTCATGCTCTCAA
AGGAGCAAACAGAGTGAGACTTATAAAAAAACTCACAAAAGCCCATGCTCTAAAGGAGAACATAG
AGTGAGACTTATAAAAAACA
Found at i:101814883 original size:95 final size:95
Alignment explanation
Indices: 101814750--101814978 Score: 273
Period size: 95 Copynumber: 2.4 Consensus size: 95
101814740 AAAAAAACTT
* *
101814750 ACAAAAGCTCATGCTCTTAAAGGAG-AACATAGAGTGAGACTTATAAAAAACACTCACAAAAGCC
1 ACAAAGGCTCATGCTCTCAAAGGAGCAA-ATAGAGTGAGACTTATAAAAAA-ACTCACAAAAGCC
* * * *
101814814 CATGCTCT-AAGAAGCACGCAGAGTTAGGCTC
64 CATGCTCTCAAGAAGCACACAGAGTGAAGCTA
* * * * *
101814845 ATAAAGGCTCATGCTCTCAAAGGAGCAAACAGAGTGAGACTTATCACAAAACTCACAAGAGCCCA
1 ACAAAGGCTCATGCTCTCAAAGGAGCAAATAGAGTGAGACTTATAAAAAAACTCACAAAAGCCCA
** *
101814910 TGCTCTCAAGGGGCACATAGAGTGAAGCTA
66 TGCTCTCAAGAAGCACACAGAGTGAAGCTA
* * *
101814940 ACAAATGCTCATGCTCTCAAAGGAACACATAGAGTGAGA
1 ACAAAGGCTCATGCTCTCAAAGGAGCAAATAGAGTGAGA
101814979 ATTAAAATTG
Statistics
Matches: 113, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
94 20 0.18
95 91 0.81
96 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (95 bp):
ACAAAGGCTCATGCTCTCAAAGGAGCAAATAGAGTGAGACTTATAAAAAAACTCACAAAAGCCCA
TGCTCTCAAGAAGCACACAGAGTGAAGCTA
Found at i:101824590 original size:40 final size:39
Alignment explanation
Indices: 101824430--101824592 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
101824420 TGTGTATGAA
*
101824430 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
101824469 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
101824508 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
101824547 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
101824587 TGTGCG
1 TGTGCG
101824593 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:101824608 original size:40 final size:39
Alignment explanation
Indices: 101824430--101824623 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
101824420 TGTGTATGAA
* *
101824430 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
101824469 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
101824508 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
101824547 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
101824587 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
101824624 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:101832542 original size:40 final size:39
Alignment explanation
Indices: 101832382--101832544 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
101832372 TGTGTATGAA
*
101832382 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
101832421 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
101832460 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
101832499 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
101832539 TGTGCG
1 TGTGCG
101832545 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:101832560 original size:40 final size:39
Alignment explanation
Indices: 101832382--101832575 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
101832372 TGTGTATGAA
* *
101832382 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
101832421 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
101832460 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
101832499 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
101832539 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
101832576 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:101834434 original size:42 final size:43
Alignment explanation
Indices: 101834375--101834459 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 43
101834365 GTCGGAACAG
101834375 GGAATCCAGAAACCGTTCTGG-CCTGTTTCACGAATACCTAAA
1 GGAATCCAGAAACCGTTCTGGCCCTGTTTCACGAATACCTAAA
101834417 GGAATCCAGAAACCGTTCTGGCCCTGTTTCACGAATACCTAAA
1 GGAATCCAGAAACCGTTCTGGCCCTGTTTCACGAATACCTAAA
101834460 TATCTCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 21 0.50
43 21 0.50
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
GGAATCCAGAAACCGTTCTGGCCCTGTTTCACGAATACCTAAA
Found at i:101835424 original size:27 final size:28
Alignment explanation
Indices: 101835393--101835462 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
101835383 TATATGAGTC
101835393 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
101835420 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
101835448 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
101835463 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:101835922 original size:2 final size:2
Alignment explanation
Indices: 101835917--101835942 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
101835907 TCACACATGC
101835917 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
101835943 GGCCGAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101839139 original size:16 final size:15
Alignment explanation
Indices: 101839098--101839139 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
101839088 GATGTATTAA
*
101839098 TAAAGGTTAAAATAG
1 TAAAGATTAAAATAG
101839113 TAAA-ATGTAAAATAAG
1 TAAAGAT-TAAAAT-AG
101839129 TAAAGATTAAA
1 TAAAGATTAAA
101839140 TAAAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 1 0.04
15 10 0.43
16 10 0.43
17 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.14, T:0.26
Consensus pattern (15 bp):
TAAAGATTAAAATAG
Found at i:101840054 original size:43 final size:43
Alignment explanation
Indices: 101840006--101840114 Score: 100
Period size: 43 Copynumber: 2.6 Consensus size: 43
101839996 ATTATGTGTT
* * *
101840006 AGACCATGTCTGGGACATTGGCATCATTATTTGAT-TTCATGTA
1 AGACCATGTCTGGGACATTGGCATCAATATGTGATAAT-ATGTA
**
101840049 AGACCATAG-CTGGG-CTATCAGCATCAATATGTGATAATATGTA
1 AGACCAT-GTCTGGGAC-ATTGGCATCAATATGTGATAATATGTA
* *
101840092 AGACCATATCTGGGATA-TGGCAT
1 AGACCATGTCTGGGACATTGGCAT
101840115 TGTGTGAGCT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
42 5 0.10
43 45 0.87
44 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
AGACCATGTCTGGGACATTGGCATCAATATGTGATAATATGTA
Found at i:101840233 original size:33 final size:33
Alignment explanation
Indices: 101840191--101840257 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
101840181 GACGAGAAAG
101840191 AATGTGTGATTGAATTAAGTGATACAGGTACGT
1 AATGTGTGATTGAATTAAGTGATACAGGTACGT
101840224 AATGTGTGATTGAATTAAGTGATACAGGTACGT
1 AATGTGTGATTGAATTAAGTGATACAGGTACGT
101840257 A
1 A
101840258 CGAGATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (33 bp):
AATGTGTGATTGAATTAAGTGATACAGGTACGT
Found at i:101842967 original size:43 final size:44
Alignment explanation
Indices: 101842862--101842970 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 44
101842852 ATTAGTTTAC
* *
101842862 CGATATGTGATTACGTGTAAGA-ATATGTCTGGGACATTGGCAT
1 CGATATGTGATTACGTGTAAGACACATGTCTGGGACAGTGGCAT
* * *
101842905 CGTTATATGATTTCGTGTAAGACACA-GTCTGGGACAGTGGCAT
1 CGATATGTGATTACGTGTAAGACACATGTCTGGGACAGTGGCAT
* * *
101842948 CGATATGTGGTAACATGTAAGAC
1 CGATATGTGATTACGTGTAAGAC
101842971 CATATCGGGG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 52 0.96
44 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (44 bp):
CGATATGTGATTACGTGTAAGACACATGTCTGGGACAGTGGCAT
Found at i:101844288 original size:13 final size:13
Alignment explanation
Indices: 101844270--101844294 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101844260 GGAGTAATCG
101844270 CACACGGGTGTGT
1 CACACGGGTGTGT
101844283 CACACGGGTGTG
1 CACACGGGTGTG
101844295 CCCCTGCCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
CACACGGGTGTGT
Found at i:101853451 original size:27 final size:27
Alignment explanation
Indices: 101853383--101853453 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
101853373 CGACTTGTAA
* *
101853383 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
101853410 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
101853437 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
101853454 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:101853460 original size:27 final size:27
Alignment explanation
Indices: 101853437--101853560 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
101853427 CAATTTACAG
101853437 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
101853464 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
101853491 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
101853518 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
101853545 AATTACTAAAATACCC
1 AATTACCAAAATACCC
101853561 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:101853479 original size:54 final size:53
Alignment explanation
Indices: 101853421--101853560 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
101853411 ATTACCGTTT
101853421 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
101853475 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
101853529 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
101853561 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:101853572 original size:81 final size:81
Alignment explanation
Indices: 101853437--101853589 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
101853427 CAATTTACAG
* **
101853437 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
101853502 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
101853518 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
101853581 AATACCCTT
64 AATACCCTT
101853590 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:101853573 original size:27 final size:27
Alignment explanation
Indices: 101853543--101853604 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
101853533 CATGGTTTGA
101853543 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
101853570 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
101853597 AAAATTAC
1 AAAATTAC
101853605 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:101853573 original size:54 final size:54
Alignment explanation
Indices: 101853437--101853587 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
101853427 CAATTTACAG
* ** * * *
101853437 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
101853491 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
101853545 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
101853588 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:101854259 original size:28 final size:28
Alignment explanation
Indices: 101854227--101854321 Score: 138
Period size: 28 Copynumber: 3.4 Consensus size: 28
101854217 GTAGATCACG
*
101854227 AAATTACCCCTAAAGAGCAAAATTACTA
1 AAATTACCCCTAAAGAGCAAAATTACCA
*
101854255 AAATTACCCCTAAAGAGCAAAATTACCG
1 AAATTACCCCTAAAGAGCAAAATTACCA
* *
101854283 AAATTACCCCTAAATAGAAAAATTACCA
1 AAATTACCCCTAAAGAGCAAAATTACCA
*
101854311 ATA-TACCCCTA
1 AAATTACCCCTA
101854322 GGGTTTAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 8 0.13
28 53 0.87
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.21
Consensus pattern (28 bp):
AAATTACCCCTAAAGAGCAAAATTACCA
Found at i:101868049 original size:34 final size:34
Alignment explanation
Indices: 101868004--101868077 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
101867994 AGTGCCACGA
101868004 TTCACAACTCAGTATGGAAACACCATACCTACAT
1 TTCACAACTCAGTATGGAAACACCATACCTACAT
* * *
101868038 TTCACAGCTCAGTATGGAAATACCATACCTACTT
1 TTCACAACTCAGTATGGAAACACCATACCTACAT
101868072 TTCACA
1 TTCACA
101868078 CTTTGCCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.35, C:0.28, G:0.09, T:0.27
Consensus pattern (34 bp):
TTCACAACTCAGTATGGAAACACCATACCTACAT
Found at i:101868162 original size:27 final size:27
Alignment explanation
Indices: 101868132--101868196 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
101868122 GATCACTGAA
* *
101868132 CACTTTGCTATGTTTGGCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
*
101868159 CACTTTGCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
101868186 CACTTTGCCAT
1 CACTTTGCCAT
101868197 AGTTCAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:101868333 original size:31 final size:31
Alignment explanation
Indices: 101868253--101868464 Score: 203
Period size: 31 Copynumber: 6.8 Consensus size: 31
101868243 TTAGATAAGT
* * *
101868253 GTAGCTAAAGCTACCACTTATCACTTG-TCACTT
1 GTAGCCAAAGCTACCACTTTTCAC-TGATCA--A
* *
101868286 GTAGCCGAAA-CGACCACTATTCACTGATCAA
1 GTAGCC-AAAGCTACCACTTTTCACTGATCAA
* * *
101868317 GTAGCTAAAGCTACCACTTTTCACTAATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAA
** * *
101868348 GTAGCCAAAGCTACTTCTTTTCACTCATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAA
*
101868379 GTAGCCGAAGCTACCACTTTTCACTGATCAA
1 GTAGCCAAAGCTACCACTTTTCACTGATCAA
* * *
101868410 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAA
* * *
101868441 GAACCCGAAGCTACCACTTTTCAC
1 GTAGCCAAAGCTACCACTTTTCAC
101868465 ATTGTACACA
Statistics
Matches: 153, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
30 3 0.02
31 126 0.82
32 2 0.01
33 19 0.12
34 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAA
Found at i:101868452 original size:93 final size:93
Alignment explanation
Indices: 101868259--101868464 Score: 250
Period size: 93 Copynumber: 2.2 Consensus size: 93
101868249 AAGTGTAGCT
* ** * *
101868259 AAAGCTACCACTTATCACTTGTCACTTGTAGCCGAAACGACCACTATTCACTGATCAAGTAGCTA
1 AAAGCTACCACTTTTCACTCATCA--GGTAGCCGAAACGACCACTATTCACTGATCAAGTAGCCA
* *
101868324 AAGCTACCACTTTTCACTAATCAGGTAGCC
64 AAGCTACCACTTTTCACTAATCAGGAACCC
** * * * *
101868354 AAAGCTACTTCTTTTCACTCATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCGAA
1 AAAGCTACCACTTTTCACTCATCAGGTAGCCGAAACGACCACTATTCACTGATCAAGTAGCCAAA
* *
101868419 GCTACCACTTTTCACTGATTAGGAACCC
66 GCTACCACTTTTCACTAATCAGGAACCC
*
101868447 GAAGCTACCACTTTTCAC
1 AAAGCTACCACTTTTCAC
101868465 ATTGTACACA
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
93 74 0.80
95 19 0.20
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (93 bp):
AAAGCTACCACTTTTCACTCATCAGGTAGCCGAAACGACCACTATTCACTGATCAAGTAGCCAAA
GCTACCACTTTTCACTAATCAGGAACCC
Found at i:101868505 original size:32 final size:33
Alignment explanation
Indices: 101868457--101868569 Score: 149
Period size: 33 Copynumber: 3.5 Consensus size: 33
101868447 GAAGCTACCA
**
101868457 CTTTTCACA-TTGTACACACAAAGCATACATTTC
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
101868490 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
101868522 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
101868555 CTTTTCTAGTTGTAC
1 CTTTTCAAGTTGTAC
101868570 CTTTTAGGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
32 29 0.41
33 41 0.59
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:101868590 original size:33 final size:32
Alignment explanation
Indices: 101868546--101868626 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 32
101868536 CACACACAGT
*
101868546 GTACATTTCCTTTTCTAGTTGT-ACCTTTT-AG
1 GTACATTTCCTTTTCAAG-TGTCACCTTTTCAG
101868577 GTACATGTATCCTTTTCAAGTGTCACCTTTTCAG
1 GTACAT-T-TCCTTTTCAAGTGTCACCTTTTCAG
*
101868611 GTGA-AATTCCTTTTCA
1 GT-ACATTTCCTTTTCA
101868627 TAATGAGATC
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
31 6 0.14
32 13 0.30
33 18 0.42
34 5 0.12
35 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.46
Consensus pattern (32 bp):
GTACATTTCCTTTTCAAGTGTCACCTTTTCAG
Found at i:101870258 original size:11 final size:11
Alignment explanation
Indices: 101870242--101870294 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
101870232 TATACTAAAT
101870242 AAATAATAATA
1 AAATAATAATA
101870253 AAATAATAAT-
1 AAATAATAATA
* *
101870263 AAATATCTCACTA
1 AAATA-AT-AATA
*
101870276 AAATATTAATA
1 AAATAATAATA
101870287 AAATAATA
1 AAATAATA
101870295 TTTATCTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.15
11 21 0.62
12 3 0.09
13 5 0.15
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATAATAATA
Found at i:101872368 original size:6 final size:6
Alignment explanation
Indices: 101872334--101872484 Score: 80
Period size: 6 Copynumber: 24.3 Consensus size: 6
101872324 AAGAAACATT
* * *
101872334 ATCAGA A-CTAGA ATTAGA ATCAAA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
101872383 ATCAGA ATCAGT ATCAGGTA A-CAGA ATC-GAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAG-A ATCAGA ATCAGA ATCA-G-A
* * * *
101872434 A-CAGA ATCAAA ATTAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA
101872483 AT
1 AT
101872485 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 18, Indels: 34
0.68 0.11 0.21
Matches are distributed among these distances:
5 9 0.08
6 79 0.72
7 18 0.16
8 4 0.04
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:101872384 original size:31 final size:31
Alignment explanation
Indices: 101872318--101872484 Score: 196
Period size: 31 Copynumber: 5.4 Consensus size: 31
101872308 TAACCCATTA
* * *
101872318 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * *
101872348 TAGAATCAAAATCAGAATCAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
101872379 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
101872410 C-GAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAG-AATCAGAATCAGTATCAGGTAACAGAAT
* *
101872441 CAAAATTAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
*
101872472 CAAAAATCAGAAT
1 C-AGAATCAGAAT
101872485 GTGAATGCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
30 15 0.13
31 91 0.77
32 12 0.10
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:101872409 original size:19 final size:19
Alignment explanation
Indices: 101872385--101872442 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
101872375 GAATCAGAAT
101872385 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
101872404 CAGAATC-G-A--A---AT
1 CAGAATCAGTATCAGGTAA
101872416 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
101872435 CAGAATCA
1 CAGAATCA
101872443 AAATTAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:101872684 original size:26 final size:27
Alignment explanation
Indices: 101872633--101872694 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
101872623 GATATTATGA
* *
101872633 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
*
101872660 TAGAGCCACCAGA-ACAGATAATGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
*
101872686 CAAAGCCAC
1 CAGAGCCAC
101872695 TTAACAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGATAATGTGG
Found at i:101872881 original size:22 final size:21
Alignment explanation
Indices: 101872853--101872917 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
101872843 GCAAATACGT
101872853 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
101872875 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
101872897 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
101872918 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:101873374 original size:27 final size:26
Alignment explanation
Indices: 101873344--101873674 Score: 360
Period size: 27 Copynumber: 12.3 Consensus size: 26
101873334 GGGGTAAAAT
* *
101873344 GGTAATTTTACCCCACGAGGGT-TTCTC
1 GGTAATTCTACCCTAC-AGGGTATT-TC
*
101873371 GGTAATTCTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
101873398 AGT-ATTCCTACCCTACAAGGGTATTTC
1 GGTAATT-CTACCCTAC-AGGGTATTTC
101873425 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
*
101873452 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
*
101873479 GGTAATTCTACCTTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGG-TATTTC
*
101873506 GATAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAG-GGTATTTC
* * *
101873533 AGTAATTCTACCATATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* * *
101873560 AGTAATTCTACCTTATAAGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGTATTTC
*
101873587 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
*
101873614 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
* * *
101873641 AGTAATTCTACACTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
101873668 GGTAATT
1 GGTAATT
101873675 TCACAAATTA
Statistics
Matches: 266, Mismatches: 27, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
26 9 0.03
27 247 0.93
28 10 0.04
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:101873672 original size:54 final size:54
Alignment explanation
Indices: 101873344--101873674 Score: 416
Period size: 54 Copynumber: 6.1 Consensus size: 54
101873334 GGGGTAAAAT
* * * * * *
101873344 GGTAATTTTACCCCACGAGGGT-TTCTCGGTAATTCTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAAGGGTATT-TCAGTAATTCTACCCTACAGGGGTATTTC
* *
101873398 AGT-ATTCCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * * *
101873452 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGATATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
101873506 GATAATTCTACCCTAC-AGAGGTATTTCAGTAATTCTACCATATAGGGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
101873560 AGTAATTCTACCTTATAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
101873614 GGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACACTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
101873668 GGTAATT
1 GGTAATT
101873675 TCACAAATTA
Statistics
Matches: 244, Mismatches: 28, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
53 4 0.02
54 233 0.95
55 7 0.03
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:101873687 original size:27 final size:27
Alignment explanation
Indices: 101873656--101873797 Score: 124
Period size: 27 Copynumber: 5.3 Consensus size: 27
101873646 TTCTACACTA
*
101873656 CAGGGGTATTTTGGTAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAT
* *
101873683 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAT
* ***
101873710 CAGAGGTATTTTGGTAATTTTATTGAT
1 CAGGGGTATTTTGGTAATTTTACAAAT
* ** *
101873737 GA-GGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAT
** ** *
101873763 CAATGGTATTTCAGTAATTTTATAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAT
*
101873790 CAAGGGTA
1 CAGGGGTA
101873798 AAATGGTAAT
Statistics
Matches: 92, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
26 20 0.22
27 72 0.78
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAT
Found at i:101873701 original size:81 final size:81
Alignment explanation
Indices: 101873344--101873674 Score: 420
Period size: 81 Copynumber: 4.1 Consensus size: 81
101873334 GGGGTAAAAT
* * *
101873344 GGTAATTTTACCCCAC-GAGGGT-TTCTCGGTAATTCTACCCTACAAGGGTATTACAGT-ATTCC
1 GGTAATTCTACCCTACAG-GGGTATT-TCGGTAATTCTACCCTACAAGGGTATTTCAGTAATT-C
*
101873406 TACCCTACAAGGGTATTTC
63 TACCTTACAAGGGTATTTC
* * *
101873425 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
101873490 CTTAC-AGGGATATTTC
66 CTTACAAGGG-TATTTC
* * * * * *
101873506 GATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCATATAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
*
101873571 CTTATAAGGGTATTTC
66 CTTACAAGGGTATTTC
* *
101873587 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
101873652 AC-TACAGGGGTATTTT
66 -CTTACAAGGGTATTTC
101873668 GGTAATT
1 GGTAATT
101873675 TCACAAATTA
Statistics
Matches: 218, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
80 4 0.02
81 203 0.93
82 11 0.05
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
CTTACAAGGGTATTTC
Found at i:101873806 original size:27 final size:27
Alignment explanation
Indices: 101873776--101873947 Score: 227
Period size: 27 Copynumber: 6.4 Consensus size: 27
101873766 TGGTATTTCA
*
101873776 GTAATTTTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * *
101873803 GTAATTCTGTAAATCAAGGGTAAGACG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * *
101873830 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
*
101873857 GTAATTCTATAAATAAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* *
101873884 GTAATTCTATAAATCTAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * *
101873911 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
101873938 GTAATTCTAT
1 GTAATTCTAT
101873948 CTTACAGGAG
Statistics
Matches: 124, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAAAATG
Found at i:101873861 original size:81 final size:81
Alignment explanation
Indices: 101873776--101873947 Score: 299
Period size: 81 Copynumber: 2.1 Consensus size: 81
101873766 TGGTATTTCA
* * * *
101873776 GTAATTTTATAAATCAAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAGACGATAATTCTGTA
1 GTAATTCTATAAATAAAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTA
101873841 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
*
101873857 GTAATTCTATAAATAAAGGGTAAAATGGTAATTCTATAAATCTAGGGTAAAACGATAATTCTGTA
1 GTAATTCTATAAATAAAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTA
101873922 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
101873938 GTAATTCTAT
1 GTAATTCTAT
101873948 CTTACAGGAG
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (81 bp):
GTAATTCTATAAATAAAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTA
AATCGAGGGTAAAATG
Found at i:101873987 original size:27 final size:27
Alignment explanation
Indices: 101873957--101874131 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
101873947 TCTTACAGGA
101873957 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
101873984 GTATTTTAGTAATTTTAC-AATCGACG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
101874010 GTATTTCAGTAATTTTATAAA-CTG-GG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* * *
101874036 GTACTTT-GGTAATTTTGCAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
* *
101874063 GTATTTCAGTAATTTTGCAATTCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
101874090 GTATTTCAATAATTTTGCAAA-CTGAAG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
101874117 GTATTTCGGTAATTT
1 GTATTTCAGTAATTT
101874132 GGTAAACTAA
Statistics
Matches: 125, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 43 0.34
27 82 0.66
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:101874066 original size:53 final size:53
Alignment explanation
Indices: 101873957--101874131 Score: 185
Period size: 53 Copynumber: 3.3 Consensus size: 53
101873947 TCTTACAGGA
*
101873957 GTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGACG
1 GTATTTCAGTAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAATCGACG
* * * *
101874010 GTATTTCAGTAATTTTATAAA-CTG-GGGTACTTTGGTAATTTTGCAAGTCGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGGGTACTTTAGTAATTTTACAA-TCGACG
* * * * * *
101874063 GTATTTCAGTAATTTTGCAATTCGAGGGTA-TTTCAATAATTTTGCAAACTGAAG
1 GTATTTCAGTAATTTTACAAATCGAGGGTACTTT-AGTAATTTTACAATC-GACG
*
101874117 GTATTTCGGTAATTT
1 GTATTTCAGTAATTT
101874132 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
52 20 0.19
53 49 0.48
54 34 0.33
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (53 bp):
GTATTTCAGTAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAATCGACG
Found at i:101874138 original size:27 final size:26
Alignment explanation
Indices: 101874062--101874147 Score: 64
Period size: 27 Copynumber: 3.2 Consensus size: 26
101874052 GCAAGTCGAG
* * * * *
101874062 GGTATTTCAGTAATTTTGCAATTCGAG
1 GGTATTTCAATAATTTGGCAA-ACTAA
*
101874089 GGTATTTCAATAATTTTGCAAACTGAA
1 GGTATTTCAATAATTTGGCAAACT-AA
** *
101874116 GGTATTTCGGTAATTTGGTAAACTAA
1 GGTATTTCAATAATTTGGCAAACTAA
*
101874142 AGTATT
1 GGTATT
101874148 CTAAACAGGA
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
GGTATTTCAATAATTTGGCAAACTAA
Found at i:101886479 original size:42 final size:42
Alignment explanation
Indices: 101886423--101886540 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
101886413 GAGATTTGCG
* *
101886423 TGTAAGACCATGTCTAGGACATTGGCATCGTATATGATTTCA
1 TGTAAGACCCTGTCTAGGACATTGGCATCGTATATGATTACA
* * *
101886465 TGTAAGACCCTGTCTAGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTAGGACATTGGCATCG-TATATGATTACA
* * *
101886508 TGTAAGA-CCTCGTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCCT-GTCTAGGACATTGGCATCGTAT
101886541 GAGCTTTTTG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 33 0.52
43 31 0.48
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCCTGTCTAGGACATTGGCATCGTATATGATTACA
Found at i:101886534 original size:43 final size:42
Alignment explanation
Indices: 101886423--101886540 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
101886413 GAGATTTGCG
* *
101886423 TGTAAGACCAT-GTCTAGGACATTGGCATCGTATATGATTTCA
1 TGTAAGACC-TCGTCTAGGACGTTGGCATCGTATATGATTACA
* *
101886465 TGTAAGACC-CTGTCTAGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCTC-GTCTAGGA-CGTTGGCATCG-TATATGATTACA
* *
101886508 TGTAAGACCTCGTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCTCGTCTAGGACGTTGGCATCGTAT
101886541 GAGCTTTTTG
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
42 29 0.46
43 33 0.52
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCTCGTCTAGGACGTTGGCATCGTATATGATTACA
Found at i:101910476 original size:46 final size:46
Alignment explanation
Indices: 101910426--101910601 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
101910416 TGGTTGAGCA
101910426 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
101910472 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
101910517 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
101910565 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101910602 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 27 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:101910582 original size:93 final size:93
Alignment explanation
Indices: 101910423--101910593 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
101910413 GGATGGTTGA
* * *
101910423 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
101910488 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
101910516 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101910581 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
101910594 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:101915218 original size:17 final size:17
Alignment explanation
Indices: 101915193--101915253 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
101915183 ATGAATTGCA
101915193 ATATGGTATGTGATGTAT
1 ATAT-GTATGTGATGTAT
***
101915211 ATATGTATGCCTTGTGA-
1 ATATGTATGTGATGT-AT
* *
101915228 ATTTTTATGTGATGTAT
1 ATATGTATGTGATGTAT
101915245 ATATGTATG
1 ATATGTATG
101915254 CCTTGTGAAT
Statistics
Matches: 31, Mismatches: 10, Indels: 5
0.67 0.22 0.11
Matches are distributed among these distances:
16 1 0.03
17 25 0.81
18 5 0.16
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.48
Consensus pattern (17 bp):
ATATGTATGTGATGTAT
Found at i:101915237 original size:34 final size:34
Alignment explanation
Indices: 101915199--101915265 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
101915189 TGCAATATGG
101915199 TATGTGATGTATATATGTATGCCTTGTGAATTTT
1 TATGTGATGTATATATGTATGCCTTGTGAATTTT
101915233 TATGTGATGTATATATGTATGCCTTGTGAATTT
1 TATGTGATGTATATATGTATGCCTTGTGAATTT
101915266 GGTAATCTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.49
Consensus pattern (34 bp):
TATGTGATGTATATATGTATGCCTTGTGAATTTT
Found at i:101921496 original size:17 final size:17
Alignment explanation
Indices: 101921476--101921508 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
101921466 ACAATTTGGT
101921476 CCTTTTCCTAATTAAAA
1 CCTTTTCCTAATTAAAA
101921493 CCTTTTCCTAATTAAA
1 CCTTTTCCTAATTAAA
101921509 CACATATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (17 bp):
CCTTTTCCTAATTAAAA
Found at i:101924320 original size:40 final size:39
Alignment explanation
Indices: 101924265--101924472 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
101924255 TGAATGATAC
* * * *
101924265 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
101924305 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
101924345 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
101924385 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
101924425 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
101924465 CC-GGCTAA
1 CCGGGCTAA
101924473 ATTCCGAAGA
Statistics
Matches: 147, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 137 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:101939239 original size:28 final size:28
Alignment explanation
Indices: 101939170--101939270 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
101939160 GACAAGATTG
* * * *
101939170 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
101939200 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101939228 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
101939257 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101939271 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:101939264 original size:29 final size:28
Alignment explanation
Indices: 101939199--101939270 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
101939189 AAAATTGTAC
*
101939199 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
101939227 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
101939256 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
101939271 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:101948829 original size:49 final size:49
Alignment explanation
Indices: 101948761--101948883 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
101948751 TACATATATG
*
101948761 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
101948810 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
101948859 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
101948884 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:101949026 original size:36 final size:37
Alignment explanation
Indices: 101948986--101949062 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
101948976 GTTCCGGGCG
101948986 AGACCCGATGA-TACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
101949022 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
101949059 AGAC
1 AGAC
101949063 TTCTTTTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 11 0.28
37 29 0.73
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:101949640 original size:31 final size:31
Alignment explanation
Indices: 101949602--101949662 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
101949592 CATCAAGAAG
101949602 TATGGAAATGTTGGTAACGGTTAGTCATGGA
1 TATGGAAATGTTGGTAACGGTTAGTCATGGA
101949633 TATGGAAATGTTGGTAACGGTTAGTCATGG
1 TATGGAAATGTTGGTAACGGTTAGTCATGG
101949663 GAATGGTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.33
Consensus pattern (31 bp):
TATGGAAATGTTGGTAACGGTTAGTCATGGA
Found at i:101951488 original size:38 final size:39
Alignment explanation
Indices: 101951436--101951547 Score: 172
Period size: 38 Copynumber: 2.9 Consensus size: 39
101951426 AATGTTCAAG
101951436 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
101951475 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
101951513 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
101951548 GGTTACCATA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
38 36 0.54
39 14 0.21
40 17 0.25
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:101951563 original size:40 final size:39
Alignment explanation
Indices: 101951436--101951577 Score: 169
Period size: 40 Copynumber: 3.6 Consensus size: 39
101951426 AATGTTCAAG
* *
101951436 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
101951475 TGAT-ACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
101951513 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
101951553 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
101951578 TGTTTTGAAC
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 35 0.40
39 13 0.15
40 40 0.45
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:101959611 original size:40 final size:39
Alignment explanation
Indices: 101959500--101959613 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
101959490 GAATGTTCAA
*
101959500 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTCCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* *
101959539 ATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* *
101959578 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
101959614 GGTTACCATA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 50 0.75
40 17 0.25
ACGTcount: A:0.23, C:0.24, G:0.32, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:101963008 original size:46 final size:46
Alignment explanation
Indices: 101962955--101963124 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
101962945 TGAGATGTGG
* *
101962955 GCCAGTGTAAGACATGTCTGAGACATGCATTGGCCATATTATGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCATATGATGAAA
* * *
101963001 GCCAGTGTAAGACCATGTTTGGGACATGGCATTGG-CAT-TGATTCAAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCATATGA-TGAA-A
* * * * * **
101963049 GCTAGTGTAAGACATGTTTGGGAAATGCATCGGCC-TCAAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCAT-ATGATGAAA
101963095 GCCAGTGTAAGACATGTCTGGGACATGCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCAT
101963125 CGACTTGATA
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
46 48 0.48
47 33 0.33
48 20 0.20
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCATATGATGAAA
Found at i:101963125 original size:46 final size:45
Alignment explanation
Indices: 101962955--101963152 Score: 159
Period size: 46 Copynumber: 4.3 Consensus size: 45
101962945 TGAGATGTGG
* * * *
101962955 GCCAGTGTAAGACATGTCTGAGACATGCATTGGCCATATTATGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TATGATGTAA
* * *
101963001 GCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCAT-TGAT-TCAA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTATGATGT-AA
* * * * *
101963047 GTGCTAGTGTAAGACATGTTTGGGAAATGCATCGGCCTCAAGATGTTA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-ATGATGTAA
* * *
101963095 GCCAGTGTAAGACATGTCTGGGACATGCATCGACTTGAT-ATGTGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-ATGATGTAA
*
101963140 GCTAGTGTAAGAC
1 GCCAGTGTAAGAC
101963153 TGTTTCTGAG
Statistics
Matches: 124, Mismatches: 20, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
45 17 0.14
46 57 0.46
47 26 0.21
48 23 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATGATGTAA
Found at i:101965501 original size:47 final size:47
Alignment explanation
Indices: 101965417--101965517 Score: 125
Period size: 47 Copynumber: 2.1 Consensus size: 47
101965407 TAAAGTACCA
*
101965417 ATGCCATGTCCTCGACATGGTCTTACATGAATCCACATATCATCGCCG
1 ATGCCATGTCCTAGACATGGTCTTACATGAA-CCACATATCATCGCCG
* * *
101965465 ATGCCATGTCC-AGACATGGTCTTACACT-AGCACACATATCATTGCTG
1 ATGCCATGTCCTAGACATGGTCTTACA-TGAAC-CACATATCATCGCCG
101965512 ATGCCA
1 ATGCCA
101965518 ACCTTATTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
46 1 0.02
47 34 0.72
48 12 0.26
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCTAGACATGGTCTTACATGAACCACATATCATCGCCG
Found at i:101966532 original size:24 final size:24
Alignment explanation
Indices: 101966468--101966534 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
101966458 GGAAGCTCAT
* *
101966468 AAGAGCCATAATCGGGAATTTCACA
1 AAGAACCAT-ATCGGGAAGTTCACA
* * *
101966493 AAGAACCTTGTTGGGAAGTTCACA
1 AAGAACCATATCGGGAAGTTCACA
101966517 AAGAACCATATCGGGAAG
1 AAGAACCATATCGGGAAG
101966535 CTCCAGATAG
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 27 0.79
25 7 0.21
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (24 bp):
AAGAACCATATCGGGAAGTTCACA
Found at i:101989031 original size:23 final size:21
Alignment explanation
Indices: 101989004--101989049 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
101988994 CTTTAGCCAT
101989004 TTTTTATTGTTATTGTAATTTAA
1 TTTTTATTGTTATTGT--TTTAA
* *
101989027 TTTTTTTTGTTTTTGTTTTAA
1 TTTTTATTGTTATTGTTTTAA
101989048 TT
1 TT
101989050 ACTTCTGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
23 14 0.67
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (21 bp):
TTTTTATTGTTATTGTTTTAA
Found at i:101989404 original size:70 final size:70
Alignment explanation
Indices: 101989317--101989456 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
101989307 TGCTAACTTT
*
101989317 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTGCTGTTGCTGCAAATAACTTTGAACTGAAA
1 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTGCTATTGCTGCAAATAACTTTGAACTGAAA
101989382 CCTAA
66 CCTAA
101989387 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTGCTATTGCTGCAAATAACTTTGAACTGAAA
1 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTGCTATTGCTGCAAATAACTTTGAACTGAAA
101989452 CCTAA
66 CCTAA
101989457 CACTATTCAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (70 bp):
ATCTAACAGGAACTGAATTGACTATAGTTAGACCTGCTATTGCTGCAAATAACTTTGAACTGAAA
CCTAA
Found at i:101995473 original size:13 final size:13
Alignment explanation
Indices: 101995455--101995481 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101995445 GCTCGGTAGG
101995455 GACATGCCCGTGT
1 GACATGCCCGTGT
101995468 GACATGCCCGTGT
1 GACATGCCCGTGT
101995481 G
1 G
101995482 CGATTGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:101998866 original size:7 final size:6
Alignment explanation
Indices: 101998850--101998895 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
101998840 ACTTTAGTTG
* * * *
101998850 TTTTTC TTTTTC TTTTTC TTTTTC CTTTTA TTTTTA TTTTTA TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
101998896 CATTTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:101998873 original size:18 final size:18
Alignment explanation
Indices: 101998850--101998902 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
101998840 ACTTTAGTTG
* *
101998850 TTTTTCTTTTTCTTTTTC
1 TTTTTCTTTTTATTTTTA
*
101998868 TTTTTCCTTTTATTTTTA
1 TTTTTCTTTTTATTTTTA
* *
101998886 TTTTTATTTTCATTTTT
1 TTTTTCTTTTTATTTTT
101998903 TTATGTTCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTTTTTATTTTTA
Found at i:102000948 original size:30 final size:30
Alignment explanation
Indices: 102000895--102000951 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
102000885 TAGGCACTTC
*
102000895 CACACGGGTAATCCACACGCCCGTGTGTGA
1 CACACGGGTAAGCCACACGCCCGTGTGTGA
* * *
102000925 CACACGGGTAGGCCACTCTCCCGTGTG
1 CACACGGGTAAGCCACACGCCCGTGTG
102000952 GCATGGTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.18
Consensus pattern (30 bp):
CACACGGGTAAGCCACACGCCCGTGTGTGA
Found at i:102004492 original size:43 final size:43
Alignment explanation
Indices: 102004398--102004493 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
102004388 AAGATGTGAA
* * *
102004398 TACATGTAAGACCATGTCTGGGAAATTGGCATTGTATTGAGAT
1 TACATGTAAGACCATGTCTGGGAAATTGACATCGTAGTGAGAT
* * *
102004441 TACGTGTAAGACCATGTCTGGGACATTGACATCGTTAGT-CGAT
1 TACATGTAAGACCATGTCTGGGAAATTGACATCG-TAGTGAGAT
*
102004484 TTCATGTAAG
1 TACATGTAAG
102004494 GCCCTATCCG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 41 0.93
44 3 0.07
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TACATGTAAGACCATGTCTGGGAAATTGACATCGTAGTGAGAT
Found at i:102007164 original size:40 final size:40
Alignment explanation
Indices: 102007093--102007284 Score: 282
Period size: 40 Copynumber: 4.8 Consensus size: 40
102007083 TATCTAGCAC
* * *
102007093 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACGATTCCAGCACGA
*
102007132 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGA
* * *
102007172 AGCGTGCGGGTCTTT-AGGCCGGATACGATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGA
102007211 AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGA
*
102007251 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCA
102007285 CATCAAATAA
Statistics
Matches: 139, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 51 0.37
40 88 0.63
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGA
Found at i:102007243 original size:79 final size:80
Alignment explanation
Indices: 102007093--102007284 Score: 289
Period size: 79 Copynumber: 2.4 Consensus size: 80
102007083 TATCTAGCAC
* * **
102007093 AGCCTGCAGGTTTTTAA-CCCGGATGTCATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
102007157 ACAATTCCAGCACGA
66 ACAATTCCAGCACGA
* * * *
102007172 AGCGTGCGGGTCTTT-AGGCCGGATACGATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
*
102007236 ACGATTCCAGCACGA
66 ACAATTCCAGCACGA
102007251 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCA
102007285 CATCAAATAA
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
78 1 0.01
79 82 0.83
80 16 0.16
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (80 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
ACAATTCCAGCACGA
Found at i:102015429 original size:40 final size:40
Alignment explanation
Indices: 102015378--102015543 Score: 278
Period size: 40 Copynumber: 4.2 Consensus size: 40
102015368 CCCGAATGTC
*
102015378 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
* *
102015418 ATTCCAGCACGAAGCGTGCGGGTCTTTAGGCCCGGATACG
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
*
102015458 ATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGATACG
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
* *
102015498 ATTCCAGCACGAAGCCTGAGGGTCTTTAAGCCCGGATACC
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
102015538 ATTCCA
1 ATTCCA
102015544 CATCAAATAA
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 117 1.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
Found at i:102027759 original size:27 final size:26
Alignment explanation
Indices: 102027729--102027810 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 26
102027719 ATCTCAAATC
* *
102027729 TGTAGGCTAGTATAACTGAAATACCCT
1 TGTAGGGTAGAAT-ACTGAAATACCCT
102027756 TGTAGGGTAGAATTACTGAAATACCCT
1 TGTAGGGTAGAA-TACTGAAATACCCT
102027783 TGTAGGGTAGAACTACTGAAATACCCT
1 TGTAGGGTAGAA-TACTGAAATACCCT
102027810 T
1 T
102027811 AGTTTACAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (26 bp):
TGTAGGGTAGAATACTGAAATACCCT
Found at i:102027826 original size:27 final size:27
Alignment explanation
Indices: 102027796--102028131 Score: 161
Period size: 27 Copynumber: 12.5 Consensus size: 27
102027786 AGGGTAGAAC
*
102027796 TACTGAAATACCCTTAGTTTACAAAAT
1 TACTAAAATACCCTTAGTTTACAAAAT
* * *
102027823 TACTGAAATACCCTTGGTTTATAAAAT
1 TACTAAAATACCCTTAGTTTACAAAAT
* *
102027850 TACT-AAATATCCTTGGTTTACAAAAT
1 TACTAAAATACCCTTAGTTTACAAAAT
* * *
102027876 TACCAAAATACCC-TCGATTAGCAAAAT
1 TACTAAAATACCCTTAGTTTA-CAAAAT
* * **
102027903 TACCAAAATACCCCT-GATTTGTAAAAT
1 TACTAAAATACCCTTAG-TTTACAAAAT
* ** *
102027930 TACTAAAATACCC-TCGACCTATAAAAT
1 TACTAAAATACCCTTAG-TTTACAAAAT
* * * *
102027957 TACCAAAATACTCTCGACTTGT--AAAAT
1 TACTAAAATACCCT-TAGTT-TACAAAAT
* ** **
102027984 TACTGAAATACCC-CCGATTTGTAAAAT
1 TACTAAAATACCCTTAG-TTTACAAAAT
* * **
102028011 TACAAAAATACCCCTA-TTTGGAAAAT
1 TACTAAAATACCCTTAGTTTACAAAAT
* * * **
102028037 TATTGAAATACCCTTAATTTGGAAAAT
1 TACTAAAATACCCTTAGTTTACAAAAT
* *
102028064 TACAAAAATACCCTTAACTTT-CAAAAAT
1 TACTAAAATACCCTT-AGTTTAC-AAAAT
** *
102028092 TA-TAGAAATACGATTAGTTTGCAAAAT
1 TACTA-AAATACCCTTAGTTTACAAAAT
102028119 TACTAAAATACCC
1 TACTAAAATACCC
102028132 CTGGTCTGTA
Statistics
Matches: 243, Mismatches: 48, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.00
26 52 0.21
27 164 0.67
28 25 0.10
29 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
TACTAAAATACCCTTAGTTTACAAAAT
Found at i:102027902 original size:53 final size:52
Alignment explanation
Indices: 102027796--102027946 Score: 158
Period size: 53 Copynumber: 2.8 Consensus size: 52
102027786 AGGGTAGAAC
* * * * *
102027796 TACTGAAATACCCTTAGTTTACAAAATTACTGAAATACCCTTGGTTTATAAAAT
1 TACT-AAATACCCTTGGTTTACAAAATTACTAAAATACCC-TCGATTACAAAAT
* *
102027850 TACTAAATATCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGCAAAAT
1 TACTAAATACCCTTGGTTTACAAAATTACTAAAATACCCTCGATTA-CAAAAT
* * * **
102027903 TACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGA
1 TA-CTAAATACCCTTGGTTTACAAAATTACTAAAATACCCTCGA
102027947 CCTATAAAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
52 5 0.06
53 38 0.47
54 38 0.47
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (52 bp):
TACTAAATACCCTTGGTTTACAAAATTACTAAAATACCCTCGATTACAAAAT
Found at i:102027938 original size:54 final size:54
Alignment explanation
Indices: 102027818--102028076 Score: 222
Period size: 54 Copynumber: 4.8 Consensus size: 54
102027808 CTTAGTTTAC
* * * * * * * **
102027818 AAAATTACTGAAATACCCTTGGTTTA-TAAAATTAC-TAAATATCCTTGGTTTAC
1 AAAATTACTAAAATACCC-TCGATTAGTAAAATTACAAAAATACCCCTGATTTGT
* * *
102027871 AAAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACTAAAATACCCTCGATTAGTAAAATTACAAAAATACCCCTGATTTGT
* * * *
102027925 AAAATTACTAAAATACCCTCGACCTA-TAAAATTACCAAAATA-CTCTCGACTTGT
1 AAAATTACTAAAATACCCTCGA-TTAGTAAAATTACAAAAATACCCCT-GATTTGT
* * * *
102027979 AAAATTACTGAAATACCCCCGATTTGTAAAATTACAAAAATACCCCT-ATTTGG
1 AAAATTACTAAAATACCCTCGATTAGTAAAATTACAAAAATACCCCTGATTTGT
* * ** * *
102028032 AAAATTATTGAAATACCCTTAATTTGGAAAATTACAAAAATACCC
1 AAAATTACTAAAATACCCTCGATTAGTAAAATTACAAAAATACCC
102028077 TTAACTTTCA
Statistics
Matches: 171, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
52 5 0.03
53 72 0.42
54 89 0.52
55 5 0.03
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCGATTAGTAAAATTACAAAAATACCCCTGATTTGT
Found at i:102027983 original size:81 final size:81
Alignment explanation
Indices: 102027817--102028023 Score: 256
Period size: 81 Copynumber: 2.6 Consensus size: 81
102027807 CCTTAGTTTA
* * * * * ***
102027817 CAAAATTACTGAAATACCCTTGGTTTATAAAATTACT-AAATATCCTTGGTTTACAAAATTACCA
1 CAAAATTACTGAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACCTACAAAATTACCA
102027881 AAATACCCTCGATTAG
66 AAATACCCTCGATTAG
** *
102027897 CAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCA
1 CAAAATTACTGAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACCTACAAAATTACCA
*
102027962 AAATACTCTCGACTT-G
66 AAATACCCTCGA-TTAG
* * *
102027978 TAAAATTACTGAAATACCCCCGATTTGTAAAATTACAAAAATACCC
1 CAAAATTACTGAAATACCCCTGATTTGTAAAATTACTAAAATACCC
102028024 CTATTTGGAA
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
80 32 0.30
81 74 0.69
82 2 0.02
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (81 bp):
CAAAATTACTGAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACCTACAAAATTACCA
AAATACCCTCGATTAG
Found at i:102028118 original size:55 final size:53
Alignment explanation
Indices: 102028000--102028133 Score: 160
Period size: 55 Copynumber: 2.5 Consensus size: 53
102027990 AATACCCCCG
* ** * *
102028000 ATTTGTAAAATTACAAAAATACCCCTATTTGGAAAATTATTGAAATACCCTTA
1 ATTTGCAAAATTACAAAAATACCCCTATTTCAAAAATTATAGAAATACCATTA
* * *
102028053 ATTTGGAAAATTACAAAAATACCCTTAACTTTCAAAAATTATAGAAATACGATTA
1 ATTTGCAAAATTACAAAAATACCCCT-A-TTTCAAAAATTATAGAAATACCATTA
* *
102028108 GTTTGCAAAATTACTAAAATACCCCT
1 ATTTGCAAAATTACAAAAATACCCCT
102028134 GGTCTGTAGA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 24 0.35
54 1 0.01
55 43 0.63
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.32
Consensus pattern (53 bp):
ATTTGCAAAATTACAAAAATACCCCTATTTCAAAAATTATAGAAATACCATTA
Found at i:102028443 original size:41 final size:41
Alignment explanation
Indices: 102028398--102028520 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
102028388 GGAGGAAGAA
*
102028398 ATTGAGGATCGCATGGTTGCTTGACGATCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* *
102028439 ATTGAGGATCGCGTGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* *
102028480 ATTAAGGATCGCATGGTTGCTTGACGATTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
102028521 GTGACTTTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
Found at i:102028722 original size:22 final size:22
Alignment explanation
Indices: 102028662--102028726 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
102028652 GCCAATTATT
* **
102028662 CTGATTATGGCTTTACGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
102028684 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGTGCCAAC
*
102028706 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
102028727 ACGTATTTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:102033374 original size:32 final size:32
Alignment explanation
Indices: 102033288--102033375 Score: 81
Period size: 32 Copynumber: 2.8 Consensus size: 32
102033278 TTAAGCCTTT
* * *
102033288 AGTAGCGGTATTATAATTGGTACAAAGCCATC
1 AGTAACGGTAATATAATTGGCACAAAGCCATC
** * *
102033320 AGTAACTATAATA-AGTTCGGCACATAGCCATC
1 AGTAACGGTAATATAATT-GGCACAAAGCCATC
102033352 AGCT-ACGGTAATATAATTGGCACA
1 AG-TAACGGTAATATAATTGGCACA
102033376 CAGTCATAGG
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
31 3 0.07
32 36 0.84
33 4 0.09
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (32 bp):
AGTAACGGTAATATAATTGGCACAAAGCCATC
Found at i:102033429 original size:27 final size:27
Alignment explanation
Indices: 102033361--102033429 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
102033351 CAGCTACGGT
* * *
102033361 AATATAATTGGCACACAGTCATAGGTA
1 AATATGATAGGCACACAGTCATAGATA
* * * *
102033388 AATATGATCGACACAGAGTCATCGATA
1 AATATGATAGGCACACAGTCATAGATA
102033415 AATATGATAGGCACA
1 AATATGATAGGCACA
102033430 TAGCCACTGG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (27 bp):
AATATGATAGGCACACAGTCATAGATA
Found at i:102035261 original size:24 final size:24
Alignment explanation
Indices: 102035233--102035299 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
102035223 CTCCTTAAAT
* *
102035233 CTCTCCATAAATCACTCCTTGATT
1 CTCTCCATAAATCACTCCATGATA
* *
102035257 TTCTCC-TAATATCTCTCCATGATA
1 CTCTCCATAA-ATCACTCCATGATA
* *
102035281 CACTCCAGAAATCACTCCA
1 CTCTCCATAAATCACTCCA
102035300 ACCTCCCATT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
23 3 0.09
24 28 0.85
25 2 0.06
ACGTcount: A:0.28, C:0.34, G:0.04, T:0.33
Consensus pattern (24 bp):
CTCTCCATAAATCACTCCATGATA
Found at i:102038412 original size:29 final size:29
Alignment explanation
Indices: 102038378--102038540 Score: 87
Period size: 29 Copynumber: 5.6 Consensus size: 29
102038368 TACTCGATTT
* * *
102038378 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
102038407 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
102038436 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
102038465 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
102038494 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
102038523 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
102038541 TATTTCCAGC
Statistics
Matches: 112, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
28 1 0.01
29 110 0.98
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:102038541 original size:29 final size:29
Alignment explanation
Indices: 102038437--102038623 Score: 333
Period size: 29 Copynumber: 6.5 Consensus size: 29
102038427 CTTCGAGCTC
102038437 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
102038466 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102038495 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102038524 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102038553 GCACAC-T-GTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
102038580 GCGCACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102038609 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
102038624 ATCTCGTCAC
Statistics
Matches: 150, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
27 25 0.17
28 2 0.01
29 123 0.82
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:102038603 original size:85 final size:86
Alignment explanation
Indices: 102038437--102038623 Score: 340
Period size: 85 Copynumber: 2.2 Consensus size: 86
102038427 CTTCGAGCTC
*
102038437 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCATGCACACT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACT-AGTGCCATATATTTCCAGCATGCACACT
102038502 TAGTGCCATATATTTCCAGCAT
65 TAGTGCCATATATTTCCAGCAT
*
102038524 GCACACTTAGTGCCATATATTTCCAGCATGCACACT-GTGCCATATATTTCCAGCATGCGCACTT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTAGTGCCATATATTTCCAGCATGCACACTT
102038588 AGTGCCATATATTTCCAGCAT
66 AGTGCCATATATTTCCAGCAT
102038609 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
102038624 ATCTCGTCAC
Statistics
Matches: 98, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
85 62 0.63
87 36 0.37
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (86 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTAGTGCCATATATTTCCAGCATGCACACTT
AGTGCCATATATTTCCAGCAT
Found at i:102044167 original size:18 final size:18
Alignment explanation
Indices: 102044144--102044182 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
102044134 TCCGGCCTTG
102044144 CTTGAGTTCCAAGAATTC
1 CTTGAGTTCCAAGAATTC
102044162 CTTGAGTTCCAAGAATTC
1 CTTGAGTTCCAAGAATTC
102044180 CTT
1 CTT
102044183 ACGCTTCTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (18 bp):
CTTGAGTTCCAAGAATTC
Found at i:102046379 original size:29 final size:29
Alignment explanation
Indices: 102046368--102046556 Score: 351
Period size: 29 Copynumber: 6.5 Consensus size: 29
102046358 CTTCGAGCTC
102046368 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
102046397 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102046426 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102046455 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102046484 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
102046513 GCGCACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102046542 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
102046557 ATCTCGTCAC
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 154 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:102055063 original size:46 final size:45
Alignment explanation
Indices: 102054991--102055164 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
102054981 GTAACACGCC
* *
102054991 CCTAAGTGAACTCGGACTCAATTCAACGAGTTCGGGCGTTTGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* *
102055036 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * * ** *
102055086 -CTCA-CGAACTCGAACTCAACTCAATGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
102055129 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
102055165 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 4 0.04
46 57 0.55
47 25 0.24
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:102055115 original size:93 final size:93
Alignment explanation
Indices: 102054998--102055168 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
102054988 GCCCCTAAGT
* * ** * *
102054998 GAACTCGGACTCAATTCAACGAGTTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102055063 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
102055091 GAACTCGAACTCAACTCAATGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102055156 CGAGTTCGGATGC
66 CGAGTTCGGATGC
102055169 TCAACCATTC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.