Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 326 of 438
Found at i:102063303 original size:39 final size:40
Alignment explanation
Indices: 102063219--102063303 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
102063209 ACTTAATTCA
* * * *
102063219 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
*
102063259 CCAGCATGAAGCCAGCGGGTCTCT-AACCCAGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
*
102063298 TCAGCA
1 CCAGCA
102063304 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.31, C:0.32, G:0.20, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
Found at i:102063751 original size:2 final size:2
Alignment explanation
Indices: 102063744--102063769 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
102063734 GCAACCGATC
102063744 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
102063770 TCCATAGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102085655 original size:39 final size:39
Alignment explanation
Indices: 102085604--102085765 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
102085594 TATGGTAACC
* *
102085604 CGCACAAATGCCTTCGGGACTTAACCC-GATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
102085643 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
102085682 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
102085721 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
102085760 CGCACA
1 CGCACA
102085766 TTCATACACA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 7 0.06
39 106 0.94
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:102093655 original size:39 final size:39
Alignment explanation
Indices: 102093574--102093736 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
102093564 TATGGTAACC
* *
102093574 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
102093614 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
102093653 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
102093692 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
102093731 CGCACA
1 CGCACA
102093737 TTCATACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:102099921 original size:38 final size:39
Alignment explanation
Indices: 102099824--102099985 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
102099814 TATGGTAACC
* *
102099824 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
102099864 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
102099903 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
102099941 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
102099980 CGCACA
1 CGCACA
102099986 TTCATACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 61 0.54
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:102099983 original size:77 final size:78
Alignment explanation
Indices: 102099832--102099987 Score: 269
Period size: 77 Copynumber: 2.0 Consensus size: 78
102099822 CCCGCACAAA
102099832 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
102099897 ATAGCTCGCACAT
66 ACAACTCGCACAT
*
102099910 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
102099974 ACAATTCGCACAT
66 ACAACTCGCACAT
102099987 T
1 T
102099988 CATACACATC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 64 0.86
78 10 0.14
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:102106136 original size:39 final size:39
Alignment explanation
Indices: 102106055--102106216 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
102106045 TATGGTAACC
* *
102106055 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
102106095 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
102106134 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
102106173 CGCACAATTGCCTTCGGGCTTAG-CCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
102106211 CGCACA
1 CGCACA
102106217 TTCATACACA
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
38 20 0.17
39 78 0.68
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:102115568 original size:6 final size:6
Alignment explanation
Indices: 102115559--102115635 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
102115549 TTATAGAACT
* * * *
102115559 AGAATC AGAATC AGAATC AAAACC AG-GTGAC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
102115608 AGTATC AGATAAC AGAATC AAAATC AGA
1 AGAATC AGA-ATC AGAATC AGAATC AGA
102115636 GTGTGAATGC
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
6 44 0.83
7 8 0.15
8 1 0.02
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:102115623 original size:31 final size:31
Alignment explanation
Indices: 102115559--102115635 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
102115549 TTATAGAACT
* *
102115559 AGAATCAGAATCAGAATCAAAACCAGGTGAC
1 AGAATCAGAATCAGAATCAAAACCAGATAAC
* ** *
102115590 AGAATCAGAATCAGAATTAGTATCAGATAAC
1 AGAATCAGAATCAGAATCAAAACCAGATAAC
*
102115621 AGAATCAAAATCAGA
1 AGAATCAGAATCAGA
102115636 GTGTGAATGC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAACCAGATAAC
Found at i:102116171 original size:27 final size:27
Alignment explanation
Indices: 102116141--102116497 Score: 439
Period size: 27 Copynumber: 13.2 Consensus size: 27
102116131 AACACCCTAG
** *
102116141 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
102116168 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
102116195 GGGTAAAACAGTAATTTTGTAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
102116222 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * **
102116249 GGGTAAAACAATAATTCTATCGATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
102116276 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
102116303 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
102116330 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
102116357 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
102116384 GGGTAAAACAGAAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
102116411 GGGTAAAAC-GATAATTTTATAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
* *
102116438 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
102116465 GGGTAAAACAGTAATTTT-TATAATTCGA
1 GGGTAAAACAGTAATTTTGTA-AA-TCGA
102116493 GGGTA
1 GGGTA
102116498 CTTTGATAAT
Statistics
Matches: 285, Mismatches: 41, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.01
27 272 0.95
28 10 0.04
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:102116253 original size:81 final size:81
Alignment explanation
Indices: 102116141--102116497 Score: 491
Period size: 81 Copynumber: 4.4 Consensus size: 81
102116131 AACACCCTAG
** * * * *
102116141 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
1 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
* * *
102116206 TAATTTTGTAAATCAA
66 TAATTCTATAAATCGA
* ** *
102116222 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACAATAATTCTATCGATCGAGGGTAAAACGG
1 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
102116287 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * *
102116303 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAA
1 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
102116368 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * *
102116384 GGGTAAAACAGAAATTTTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
*
102116449 TAATTCTGTAAATCGA
66 TAATTCTATAAATCGA
102116465 GGGTAAAACAGTAATTTT-TATAATTCGAGGGTA
1 GGGTAAAACAGTAATTTTGTA-AATT-GAGGGTA
102116498 CTTTGATAAT
Statistics
Matches: 244, Mismatches: 30, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
80 2 0.01
81 235 0.96
82 7 0.03
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
TAATTCTATAAATCGA
Found at i:102116580 original size:27 final size:27
Alignment explanation
Indices: 102116523--102116597 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
102116513 ATGTCGAGTG
* * *
102116523 TATTTCAGTAATTTTGCAAACTAAGGG
1 TATTTCGGTAATTTTACAAACTAAGGA
*
102116550 TATTTCGGTAATTTTACAAA-TCCAGGA
1 TATTTCGGTAATTTTACAAACT-AAGGA
*
102116577 TATTT-GTGTAATTTTATAAAC
1 TATTTCG-GTAATTTTACAAAC
102116598 CGGGGGCACT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.05
27 38 0.95
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAACTAAGGA
Found at i:102124973 original size:39 final size:40
Alignment explanation
Indices: 102124866--102125083 Score: 240
Period size: 40 Copynumber: 5.5 Consensus size: 40
102124856 GCTCGATTGT
* * * * * * *
102124866 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * * * *
102124906 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
102124946 CTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
102124985 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * * * * * *
102125025 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTGGTAAC-TCGCACAAATGC
*
102125066 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
102125084 ACACCATTCG
Statistics
Matches: 153, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 34 0.22
40 94 0.61
41 25 0.16
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
Found at i:102124986 original size:79 final size:81
Alignment explanation
Indices: 102124893--102125084 Score: 253
Period size: 79 Copynumber: 2.4 Consensus size: 81
102124883 GTTATAGTGA
* * * *
102124893 TTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTC-GGACTTA
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTA
* *
102124957 ACCCGGTTTTGGTAAC
66 ACCCGGATTTAGTAAC
* * * *
102124973 -TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTG
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTA
*
102125037 ACCCGGATTTAGTCAC
66 ACCCGGATTTAGTAAC
* *
102125053 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGA
102125085 CACCATTCGA
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 50 0.53
80 18 0.19
81 27 0.28
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTA
ACCCGGATTTAGTAAC
Found at i:102125042 original size:119 final size:121
Alignment explanation
Indices: 102124866--102125083 Score: 298
Period size: 119 Copynumber: 1.8 Consensus size: 121
102124856 GCTCGATTGT
* * * *
102124866 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
* * *
102124931 AAC-TCGCACGAATGCCTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
66 AACTTAGCACAAAAGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * *
102124985 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATT-GACCCGGATTTAG
1 CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAG
* *
102125049 TCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
65 TAACTTAGCACAAAAGCCTTCGGGACTTAACCCGG
102125084 ACACCATTCG
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
118 1 0.01
119 58 0.69
120 13 0.15
121 12 0.14
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (121 bp):
CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
AACTTAGCACAAAAGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
Found at i:102133346 original size:40 final size:40
Alignment explanation
Indices: 102133277--102133468 Score: 222
Period size: 40 Copynumber: 4.8 Consensus size: 40
102133267 TCACAGTGAT
* * *
102133277 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * * *
102133317 TCGCACGAATGCCTTTGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * * *
102133357 TCGCACAAATTCCTTCAGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
102133397 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
102133437 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAACCCGGA
102133469 CACCATTTGA
Statistics
Matches: 128, Mismatches: 23, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 102 0.80
41 26 0.20
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
Found at i:102143566 original size:11 final size:10
Alignment explanation
Indices: 102143534--102143570 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
102143524 CATGAGATTT
102143534 TGATAT-ACA
1 TGATATGACA
102143543 TGATATGACA
1 TGATATGACA
102143553 TGATATGCACA
1 TGATATG-ACA
102143564 TGATATG
1 TGATATG
102143571 TTATGAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:102143566 original size:21 final size:21
Alignment explanation
Indices: 102143540--102143590 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
102143530 ATTTTGATAT
*
102143540 ACATGATATGACATGATATGC
1 ACATGATATGACATGAAATGC
**
102143561 ACATGATATGTTATGAAATGC
1 ACATGATATGACATGAAATGC
*
102143582 GCATGATAT
1 ACATGATAT
102143591 ACTCATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAAATGC
Found at i:102143907 original size:24 final size:24
Alignment explanation
Indices: 102143850--102143921 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
102143840 AAGAAGTGCA
102143850 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
102143874 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
102143898 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
102143922 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:102149749 original size:40 final size:40
Alignment explanation
Indices: 102149704--102149833 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
102149694 CGGAATATAA
102149704 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
102149744 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
102149784 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
102149824 CCGGATATAA
1 CCGGATATAA
102149834 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102154273 original size:10 final size:10
Alignment explanation
Indices: 102154252--102154287 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
102154242 CATGAGATTT
102154252 TGATAT-ACA
1 TGATATGACA
102154261 TGATATGACA
1 TGATATGACA
102154271 TGATATGCACA
1 TGATATG-ACA
102154282 TGATAT
1 TGATAT
102154288 ATTATGAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:102154294 original size:21 final size:21
Alignment explanation
Indices: 102154270--102154309 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
102154260 ATGATATGAC
*
102154270 ATGATATGCACATGATATATT
1 ATGAGATGCACATGATATATT
*
102154291 ATGAGATGCGCATGATATA
1 ATGAGATGCACATGATATA
102154310 CTCATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
ATGAGATGCACATGATATATT
Found at i:102154413 original size:24 final size:24
Alignment explanation
Indices: 102154356--102154427 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
102154346 AGGAAGTACA
*
102154356 AAAAG-GGCTTTGCCCTAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
102154380 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
102154404 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
102154428 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:102160828 original size:6 final size:6
Alignment explanation
Indices: 102160818--102160854 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
102160808 TTTTACCAAC
*
102160818 TCTTTC TCTTTT T-TTTT TCTTTT TCTTTT TCTTTT TC
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC
102160855 CACAAGATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:102164183 original size:80 final size:80
Alignment explanation
Indices: 102164099--102164247 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
102164089 TATGGTAACC
* * * *
102164099 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
102164163 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
102164179 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
102164244 CCGG
66 CCGG
102164248 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:102164189 original size:40 final size:38
Alignment explanation
Indices: 102164140--102164247 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
102164130 ATCACGATTT
*
102164140 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
102164180 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
102164220 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
102164248 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:102166287 original size:12 final size:12
Alignment explanation
Indices: 102166272--102166313 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
102166262 AGAAATTTGG
*
102166272 GGAGAGAATTAA
1 GGAGTGAATTAA
102166284 GGAGTGAATTAA
1 GGAGTGAATTAA
* *
102166296 GAAGTGGATTAA
1 GGAGTGAATTAA
102166308 GGAGTG
1 GGAGTG
102166314 GAGGAGAGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.38, T:0.21
Consensus pattern (12 bp):
GGAGTGAATTAA
Found at i:102173271 original size:48 final size:47
Alignment explanation
Indices: 102173168--102173534 Score: 368
Period size: 48 Copynumber: 7.7 Consensus size: 47
102173158 AGGTAAATTA
* **
102173168 CCGATGCCATGTCCCAGACATGGTCTTACA-TTGCTCACATGTTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-AATGAGG
* ** *
102173215 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACACGTCGAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAAAT-GAGG
*
102173263 CCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCGTCACAAT---G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTC-ACA-AATGAGG
* * *
102173311 CCGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATAA-CATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-AATGA-GG
* * * * * *
102173359 TCGATGCCATG-CTTCAAACATGGTCTTACACTAGCTCGCATAATGTGG
1 CCGATGCCATGTC-CCAGACATGGTCTTACACTGGCTCACA-AATGAGG
* * *
102173407 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-AATGAGG
* * * *
102173455 CCAATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-AATGAGG
102173503 CCGATGCCATGTCCCAGACATGGTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
102173535 AGCACACATA
Statistics
Matches: 277, Mismatches: 30, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
45 4 0.01
46 3 0.01
47 31 0.11
48 232 0.84
49 1 0.00
50 3 0.01
51 2 0.01
52 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAAATGAGG
Found at i:102173427 original size:144 final size:143
Alignment explanation
Indices: 102173168--102173542 Score: 431
Period size: 144 Copynumber: 2.6 Consensus size: 143
102173158 AGGTAAATTA
***
102173168 CCGATGCCATGTCCCAGACATGGTCTTACAT-T-GCTCACATGTTGA-GGCCGATGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTAC-TCTGGCTCACAT-AACATGGCCGATGCCATGTCCC
* **
102173230 AAACATGGTCTTACACTGGCTCACACGTCGAAGCCGATGCCATGTCCCAGACATGGTCTTACACT
64 AAACATGGTCTTACACTAGCTCACAAATCGAAGCCGATGCCATGTCCCAGACATGGTCTTACACT
*
102173295 GGTTCTCGTCACAA-T-G
129 AG--CTC-TCACAAGTGG
* * *
102173311 CCGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATAACATTGTCGATGCCATG-CTTCA
1 CCGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATAACATGGCCGATGCCATGTC-CCA
* **
102173375 AACATGGTCTTACACTAGCTCGCATAAT-GTGGCCGATGCCATGTCCCAGACATGGTCTTACACT
65 AACATGGTCTTACACTAGCTCACA-AATCGAAGCCGATGCCATGTCCCAGACATGGTCTTACACT
*
102173439 AGCTCTCATAATGTGG
129 AGCTCTCACAA-GTGG
* * * * ** *
102173455 CCAATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATAACATGGCCGATGCCATGTCCCAA
*
102173520 ACATGGTCTTACACTAGCACACA
66 ACATGGTCTTACACTAGCTCACA
102173543 TATCACCCAA
Statistics
Matches: 197, Mismatches: 26, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
141 5 0.03
142 4 0.02
143 33 0.17
144 153 0.78
145 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (143 bp):
CCGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATAACATGGCCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCTCACAAATCGAAGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
CTCTCACAAGTGG
Found at i:102173535 original size:96 final size:96
Alignment explanation
Indices: 102173168--102173544 Score: 433
Period size: 96 Copynumber: 3.9 Consensus size: 96
102173158 AGGTAAATTA
* * ** * *
102173168 CCGATGCCATGTCCCAGACATGGTCTTACA-TTGCTCACATGTTGAGGCCGATGCCATGTCCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
* ** *
102173232 ACATGGTCTTACACTGGCTCACA-CGTCGAAG
66 ACATGGTCTTACACTAGCTCACATAAT-GTAG
*
102173263 CCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCGTCACAA--T-GCCGATGCCATGTCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTC-TCATAATGTGGCCGATGCCATGTCC
* * ** *
102173325 CAGACATGGTCTTACTCTGGCTCACATAACATTG
63 CAGACATGGTCTTACACTAGCTCACATAATGTAG
* * * * *
102173359 TCGATGCCATG-CTTCAAACATGGTCTTACACTAGCTCGCATAATGTGGCCGATGCCATGTCCCA
1 CCGATGCCATGTC-CCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCA
* *
102173423 GACATGGTCTTACACTAGCTCTCATAATGTGG
65 GACATGGTCTTACACTAGCTCACATAATGTAG
* *
102173455 CCAATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
*
102173520 ACATGGTCTTACACTAGCACACATA
66 ACATGGTCTTACACTAGCTCACATA
102173545 TCACCCAAAT
Statistics
Matches: 237, Mismatches: 35, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
93 4 0.02
94 3 0.01
95 32 0.14
96 192 0.81
97 1 0.00
98 3 0.01
99 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCACATAATGTAG
Found at i:102181073 original size:48 final size:48
Alignment explanation
Indices: 102180996--102181460 Score: 548
Period size: 48 Copynumber: 9.7 Consensus size: 48
102180986 AGGGTAAATT
* * *
102180996 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
* * * * ** *
102181044 GCTGATGCCATGTCCCAGACATGGACTTACATTGGCTCACA-CGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
* *
102181092 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--T-AATGTG
* * *
102181142 --CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATAATATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* * *
102181188 GTCGATGCCATG-CTCCAAACATGGTCTTACACTAGCT-TGCATAATGTG
1 GCCGATGCCATGTC-CCAGACATGGTCTTACACTGGCTCT-CATAATGTG
102181236 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
*
102181284 GCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* ** *
102181332 GCCGATACCATGTCCCAGACATAATCTTACACTGGCTCTCATAATGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* * * *
102181380 GCCAATGCCATGTCCCAAACATGGCCTTACTCTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
** *
102181428 GCTAATGCCATGTCCTAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
102181461 AGTACATATA
Statistics
Matches: 363, Mismatches: 42, Indels: 24
0.85 0.10 0.06
Matches are distributed among these distances:
45 4 0.01
46 1 0.00
47 2 0.01
48 352 0.97
49 2 0.01
51 1 0.00
52 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
Found at i:102189366 original size:28 final size:28
Alignment explanation
Indices: 102189334--102189389 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
102189324 TTTTTCGTGT
*
102189334 TCATTTTATTTTTGGTTATGAGTATGTC
1 TCATTTTATTTTTGGTTATGAATATGTC
102189362 TCATTTTATTTTTGGTTATGAATATGTC
1 TCATTTTATTTTTGGTTATGAATATGTC
102189390 AACTTGATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.20, C:0.07, G:0.16, T:0.57
Consensus pattern (28 bp):
TCATTTTATTTTTGGTTATGAATATGTC
Found at i:102193876 original size:40 final size:39
Alignment explanation
Indices: 102193831--102194038 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
102193821 CGGAATACAA
*
102193831 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
102193871 CCGGATAGAACGACTTGCACAAATTCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
102193911 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
102193951 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
102193991 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
102194031 CCGGATAT
1 CCGGATAT
102194039 CATTCAATTG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:102193971 original size:80 final size:81
Alignment explanation
Indices: 102193831--102194036 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
102193821 CGGAATACAA
* * *
102193831 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
102193895 T-CCTTCGGGTATTAGC
65 TGCCTTCGGGTATTAAC
* *
102193911 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
102193974 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
102193991 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
102194037 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 4 0.04
80 100 0.93
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATT
GCCTTCGGGTATTAAC
Found at i:102197717 original size:43 final size:43
Alignment explanation
Indices: 102197615--102197761 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 43
102197605 ATCGAGATGT
* *
102197615 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
* *
102197658 GATTACATGTAGGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAATGA
*** * * *
102197701 GATTTTGTGTAAGACCATGTCTAGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA-ATGA
* *
102197744 GATAACAAGTAAGACCAT
1 GATTACATGTAAGACCAT
102197762 ATCTAGGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 79 0.93
44 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
Found at i:102206335 original size:23 final size:23
Alignment explanation
Indices: 102206308--102206360 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
102206298 CTAGCGGTGA
102206308 CATGTGACAACCTCTCAGTATAC
1 CATGTGACAACCTCTCAGTATAC
* **
102206331 CATGTGGCAACCTCTCAGTATGT
1 CATGTGACAACCTCTCAGTATAC
102206354 CATGTGA
1 CATGTGA
102206361 AAAATATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (23 bp):
CATGTGACAACCTCTCAGTATAC
Found at i:102209612 original size:40 final size:40
Alignment explanation
Indices: 102209505--102209683 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
102209495 GCTCGATTGT
* * * * *
102209505 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * * * *
102209545 CTTTGGGAATTAGCTCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
*
102209585 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
* * *
102209625 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTAGTAAC-TCGCACAAATGC
*
102209666 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
102209684 ATACCATTCG
Statistics
Matches: 116, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.02
40 87 0.75
41 27 0.23
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
Found at i:102212623 original size:45 final size:45
Alignment explanation
Indices: 102212559--102212822 Score: 374
Period size: 45 Copynumber: 5.9 Consensus size: 45
102212549 TATCATACGG
* *
102212559 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATACCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
102212604 TACTATTCGGGCCTTTGAGCCTAACAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
102212649 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTAAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
102212694 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTAAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
102212739 TACTATTCGGGCCTTCGAGCCTAGAAGGCTATAATACCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
102212784 TGA-TA-TCGGG-CTTCGAGCCTAGCAAGCGA-AATGCCGGTG
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG
102212823 GATGAATTCT
Statistics
Matches: 204, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
42 9 0.04
43 16 0.08
44 5 0.02
45 173 0.85
46 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:102213926 original size:18 final size:18
Alignment explanation
Indices: 102213903--102214020 Score: 53
Period size: 18 Copynumber: 6.6 Consensus size: 18
102213893 TTTATTAGTT
102213903 TCATTCAGTAACATTCAA
1 TCATTCAGTAACATTCAA
*
102213921 TCATTC-GATAACAATT-AG
1 TCATTCAG-TAAC-ATTCAA
* * * *
102213939 TCGTTCAATAATATTCAG
1 TCATTCAGTAACATTCAA
* ** * *
102213957 TCACTCTTTAACAGTCAG
1 TCATTCAGTAACATTCAA
* *
102213975 TTATTCAGTAACGA-TAAA
1 TCATTCAGTAAC-ATTCAA
* *
102213993 TTATTCAGTAACAGTCAA
1 TCATTCAGTAACATTCAA
*
102214011 TTATTCAGTA
1 TCATTCAGTA
102214021 GCAATCAGTT
Statistics
Matches: 77, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
17 5 0.06
18 68 0.88
19 4 0.05
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (18 bp):
TCATTCAGTAACATTCAA
Found at i:102214015 original size:36 final size:36
Alignment explanation
Indices: 102213965--102214056 Score: 121
Period size: 36 Copynumber: 2.6 Consensus size: 36
102213955 AGTCACTCTT
* *
102213965 TAACAGTCAGTTATTCAGTAACGATAAATTATTCAG
1 TAACAGTCAGTTATTCAGTAACAATAAATTATCCAG
* * * *
102214001 TAACAGTCAATTATTCAGTAGCAATCAGTTATCCAG
1 TAACAGTCAGTTATTCAGTAACAATAAATTATCCAG
*
102214037 TAACAGTCAGTTATTTAGTA
1 TAACAGTCAGTTATTCAGTA
102214057 CCTTTATTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (36 bp):
TAACAGTCAGTTATTCAGTAACAATAAATTATCCAG
Found at i:102214032 original size:18 final size:18
Alignment explanation
Indices: 102213965--102214056 Score: 94
Period size: 18 Copynumber: 5.1 Consensus size: 18
102213955 AGTCACTCTT
*
102213965 TAACAGTCAGTTATTCAG
1 TAACAATCAGTTATTCAG
* * *
102213983 TAACGATAAATTATTCAG
1 TAACAATCAGTTATTCAG
* *
102214001 TAACAGTCAATTATTCAG
1 TAACAATCAGTTATTCAG
* *
102214019 TAGCAATCAGTTATCCAG
1 TAACAATCAGTTATTCAG
* *
102214037 TAACAGTCAGTTATTTAG
1 TAACAATCAGTTATTCAG
102214055 TA
1 TA
102214057 CCTTTATTTA
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (18 bp):
TAACAATCAGTTATTCAG
Found at i:102214284 original size:51 final size:53
Alignment explanation
Indices: 102214172--102214290 Score: 145
Period size: 51 Copynumber: 2.3 Consensus size: 53
102214162 CTGTAACGGT
*
102214172 AACAGTAACAGTAACAGTAGCGGTACACAGATTACCTCATCGAAAAAAATCCAG
1 AACAGTAACAGTAACAGTAGAGGTACACAGA-TACCTCATCGAAAAAAATCCAG
* * * **
102214226 AATAGTAACAGTAACAGTA-AGGTACGA-AG-TACCTCTTCGGAACGAATCCAG
1 AACAGTAACAGTAACAGTAGAGGTAC-ACAGATACCTCATCGAAAAAAATCCAG
102214277 AACAGTAACAGTAA
1 AACAGTAACAGTAA
102214291 GGTGACACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
51 31 0.54
53 7 0.12
54 19 0.33
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTAGAGGTACACAGATACCTCATCGAAAAAAATCCAG
Found at i:102219503 original size:36 final size:34
Alignment explanation
Indices: 102219421--102219495 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 34
102219411 TAGATGTTCT
* *
102219421 TTTTAGTTCTTTTATTTATTTATATATTTTTATAAAA
1 TTTTAATT-TTTTATTAATTTATATA--TTTATAAAA
102219458 TTTTAATTTTTTATTAATTTATATA-TTATAAAA
1 TTTTAATTTTTTATTAATTTATATATTTATAAAA
102219491 TTTTA
1 TTTTA
102219496 TATATTTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
33 13 0.36
36 16 0.44
37 7 0.19
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (34 bp):
TTTTAATTTTTTATTAATTTATATATTTATAAAA
Found at i:102220840 original size:43 final size:43
Alignment explanation
Indices: 102220779--102220866 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
102220769 TCTTATCTGA
102220779 ATCAACTTGTATGTTCACAATTTCTTTGTGGGTATTCCAGATT
1 ATCAACTTGTATGTTCACAATTTCTTTGTGGGTATTCCAGATT
102220822 ATCAACTTGTATGTTCACAATTTCTTTGTGGGTATTCCAGATT
1 ATCAACTTGTATGTTCACAATTTCTTTGTGGGTATTCCAGATT
102220865 AT
1 AT
102220867 TCTTTCTTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (43 bp):
ATCAACTTGTATGTTCACAATTTCTTTGTGGGTATTCCAGATT
Found at i:102221153 original size:15 final size:15
Alignment explanation
Indices: 102221118--102221165 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
102221108 AAATAATAAC
* *
102221118 ATAAATAACTAAAAC
1 ATAAATAATTAAAAT
* *
102221133 AT-AATATTTTAAAT
1 ATAAATAATTAAAAT
102221147 ATAAATAATTAAAAT
1 ATAAATAATTAAAAT
102221162 ATAA
1 ATAA
102221166 CTCGAAAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAATAATTAAAAT
Found at i:102223091 original size:23 final size:23
Alignment explanation
Indices: 102223060--102223106 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
102223050 GAATGGTTGT
*
102223060 TCATTTTTCTTTATGATGCCATG
1 TCATATTTCTTTATGATGCCATG
102223083 TCATATTTCTTTATGATGCCATG
1 TCATATTTCTTTATGATGCCATG
102223106 T
1 T
102223107 ACTATGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (23 bp):
TCATATTTCTTTATGATGCCATG
Found at i:102226353 original size:21 final size:21
Alignment explanation
Indices: 102226327--102226396 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
102226317 CAAATTCCTG
102226327 GTTTGAATTCATTGAGTGTTT
1 GTTTGAATTCATTGAGTGTTT
* * *
102226348 GTTTGAATCCTAATCAGATG---
1 GTTTGAATTC-ATTGAG-TGTTT
102226368 GTTTGAATTCATTGAGTGTTT
1 GTTTGAATTCATTGAGTGTTT
102226389 GTTTGAAT
1 GTTTGAAT
102226397 CCTAATCAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 2 0.05
19 4 0.11
20 9 0.24
21 17 0.45
22 4 0.11
23 2 0.05
ACGTcount: A:0.23, C:0.07, G:0.23, T:0.47
Consensus pattern (21 bp):
GTTTGAATTCATTGAGTGTTT
Found at i:102226371 original size:41 final size:41
Alignment explanation
Indices: 102226325--102226406 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
102226315 AACAAATTCC
102226325 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
1 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
102226366 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
1 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
102226407 CCCTAATGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (41 bp):
TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
Found at i:102230183 original size:54 final size:52
Alignment explanation
Indices: 102230076--102230186 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 52
102230066 AAATTAACAG
**
102230076 TCATTTTTAATATTCTAACTTTTATAATAGTAAAATTAATCACACTAACTTT
1 TCATTTTTAATATTCTAACTTTTATAATAACAAAATTAATCACACTAACTTT
* * *
102230128 TCATTTTTAATATCTTTAACTTTTATAATAACACAATTTAATCACA-TCAAGTTT
1 TCATTTTTAATAT-TCTAACTTTTATAATAACA-AAATTAATCACACT-AACTTT
102230182 TCATT
1 TCATT
102230187 ATTTTTCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
52 13 0.25
53 17 0.33
54 21 0.41
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (52 bp):
TCATTTTTAATATTCTAACTTTTATAATAACAAAATTAATCACACTAACTTT
Found at i:102230520 original size:15 final size:16
Alignment explanation
Indices: 102230490--102230522 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
102230480 GTAATTTTAA
102230490 TTATATACACATATAT
1 TTATATACACATATAT
*
102230506 TTATATATA-ATATAT
1 TTATATACACATATAT
102230521 TT
1 TT
102230523 TCATATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATATACACATATAT
Found at i:102234346 original size:26 final size:24
Alignment explanation
Indices: 102234307--102234356 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
102234297 ATTTCGTTAA
*
102234307 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
102234333 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
102234357 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:102234844 original size:76 final size:76
Alignment explanation
Indices: 102234706--102235349 Score: 574
Period size: 76 Copynumber: 8.5 Consensus size: 76
102234696 ACTAAGGCTT
* * * * * * *
102234706 GCTGATTTAAGATTGTGACCCTTGGTTTTCTAACAACTCGCTAACCTATGTTCACAGTTGATATT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
**
102234771 TTTTACGGTTT
66 TTTTACGGTCC
* * * * * * * *
102234782 GCTGATTTAAGATCGTGACCTTTAGTTTTCTAACAGCTCGCTAACCTACGTTTACAGCTGATATT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
* *
102234847 TTTTATGGTCT
66 TTTTACGGTCC
* * * * * *** *
102234858 GCTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTGACCTACGTTCATAGTTGATATT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
*
102234923 TTTTATGGTCC
66 TTTTACGGTCC
* * * * * *
102234934 GCTTATTTAAGATTGTGACCCTCGGTTTTCTAACAACTTGTTGACCTACGTTCACAATTGATATT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
*
102234999 TTTTGCGGTCC
66 TTTTACGGTCC
* * * *
102235010 GCTGATTTAAGATCGCGACCCTTGGTTTTTTAACAGCTTTTTTACCTACGTTCACAGTTGTTATT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
102235075 TTTTACGGTCC
66 TTTTACGGTCC
* * * * *
102235086 ACTGATTTAATATTGCGACCCTCGGTTTTCTAATAGCTTGTTGACCTACGTTCACA-TCTGATAT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGT-TGATAT
** *
102235150 TTTTTACTATCT
65 TTTTTACGGTCC
* * * * * * ** *
102235162 GCTGCTTTAAGATCGCGACCCTCGATTTTCTAATAGCTTGTTGACGTATGTTCACAACTGTTATT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
*
102235227 TTTTACGGTTC
66 TTTTACGGTCC
* * * * * * * * **
102235238 GCTGATTTAAGGTCACGATCC-TAGTTTTCTGATAGCTCGTTGACCTATGTTCACAACTGATA-T
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
* * *
102235301 TTTTATGGGCT
66 TTTTACGGTCC
** * * *
102235312 ATTGATTTAAGATCACGACCCTCGATTTTCTAACAGCT
1 GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCT
102235350 CGCTGATTCA
Statistics
Matches: 467, Mismatches: 98, Indels: 7
0.82 0.17 0.01
Matches are distributed among these distances:
74 25 0.05
75 46 0.10
76 396 0.85
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.41
Consensus pattern (76 bp):
GCTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTTGTTGACCTACGTTCACAGTTGATATT
TTTTACGGTCC
Found at i:102234981 original size:152 final size:152
Alignment explanation
Indices: 102234705--102235355 Score: 651
Period size: 152 Copynumber: 4.3 Consensus size: 152
102234695 CACTAAGGCT
*** * * * * *
102234705 TGCTGATTTAAGATTGTGACCCTTGGTTTTCTAACAACTCGCTAACCTATGTTCACAGTTGATAT
1 TGCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATAT
** * * * * * *
102234770 TTTTTACGGTTTGCTGATTTAAGATCGTGACCTTTAGTTTTCTAACAGCTCGCTAACCTACGTTT
66 TTTTTACGGTCCGCTGATTTAAGATCGCGACCCTCAGTTTTCTAACAGCTCGTTGACCTACGTTC
*
102234835 ACAGCTGATATTTTTTATGGTC
131 ACAACTGATATTTTTTATGGTC
* * * *
102234857 TGCTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTGACCTACGTTCATAGTTGATAT
1 TGCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATAT
* * * * * * *
102234922 TTTTTATGGTCCGCTTATTTAAGATTGTGACCCTCGGTTTTCTAACAACTTGTTGACCTACGTTC
66 TTTTTACGGTCCGCTGATTTAAGATCGCGACCCTCAGTTTTCTAACAGCTCGTTGACCTACGTTC
* **
102234987 ACAATTGATATTTTTTGCGGTC
131 ACAACTGATATTTTTTATGGTC
* * * * * *** * *
102235009 CGCTGATTTAAGATCGCGACCCTTGGTTTTTTAACAGCTTTTTTACCTACGTTCACAGTTGTTAT
1 TGCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATAT
* * * * * *
102235074 TTTTTACGGTCCACTGATTTAATATTGCGACCCTCGGTTTTCTAATAGCTTGTTGACCTACGTTC
66 TTTTTACGGTCCGCTGATTTAAGATCGCGACCCTCAGTTTTCTAACAGCTCGTTGACCTACGTTC
* *
102235139 ACATCTGATATTTTTTACT-ATC
131 ACAACTGATATTTTTTA-TGGTC
* * * * * * * ** *
102235161 TGCTGCTTTAAGATCGCGACCCTCGATTTTCTAATAGCTTGTTGACGTATGTTCACAACTGTTAT
1 TGCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATAT
* * * * * * *
102235226 TTTTTACGGTTCGCTGATTTAAGGTCACGATCCT-AGTTTTCTGATAGCTCGTTGACCTATGTTC
66 TTTTTACGGTCCGCTGATTTAAGATCGCGACCCTCAGTTTTCTAACAGCTCGTTGACCTACGTTC
*
102235290 ACAACTGATA-TTTTTATGGGC
131 ACAACTGATATTTTTTATGGTC
**
102235311 TATTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGA
1 TGCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGA
102235356 TTCACGATCA
Statistics
Matches: 410, Mismatches: 87, Indels: 6
0.82 0.17 0.01
Matches are distributed among these distances:
149 1 0.00
150 45 0.11
151 35 0.09
152 329 0.80
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.41
Consensus pattern (152 bp):
TGCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATAT
TTTTTACGGTCCGCTGATTTAAGATCGCGACCCTCAGTTTTCTAACAGCTCGTTGACCTACGTTC
ACAACTGATATTTTTTATGGTC
Found at i:102235109 original size:228 final size:228
Alignment explanation
Indices: 102234706--102235355 Score: 714
Period size: 228 Copynumber: 2.9 Consensus size: 228
102234696 ACTAAGGCTT
* * * * *
102234706 GCTGATTTAAGATTGTGACCCTTGGTTTTCTAACAACTCGCTAACCTATGTTCACAGTTGATATT
1 GCTGATTTAAGATTGTGACCCTCGGTTTTCTAACAACTTGTTGACCTATGTTCACAATTGATATT
* * * *
102234771 TTTTACGGTTTGCTGATTTAAGATCGTGACCTTTAGTTTTCTAACAGCTCGCTAACCTACGTTTA
66 TTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTCA
* **
102234836 CAGCTGATATTTTTTATGGTCTGCTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
131 CAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
* *
102234901 ACCTACGTTCATAGT-TGATATTTTTTA-TGGTCC
196 ACCTACGTTCACA-TCTGATATTTTTTACT-ATCC
* *
102234934 GCTTATTTAAGATTGTGACCCTCGGTTTTCTAACAACTTGTTGACCTACGTTCACAATTGATATT
1 GCTGATTTAAGATTGTGACCCTCGGTTTTCTAACAACTTGTTGACCTATGTTCACAATTGATATT
* * * * *** *
102234999 TTTTGCGGTCCGCTGATTTAAGATCGCGACCCTTGGTTTTTTAACAGCTTTTTTACCTACGTTCA
66 TTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTCA
* * * ** * * ***
102235064 CAGTTGTTATTTTTTACGGTCCACTGATTTAATATTGCGACCCTCGGTTTTCTAATAGCTTGTTG
131 CAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
*
102235129 ACCTACGTTCACATCTGATATTTTTTACTATCT
196 ACCTACGTTCACATCTGATATTTTTTACTATCC
* * * * * * * * *
102235162 GCTGCTTTAAGATCGCGACCCTCGATTTTCTAATAGCTTGTTGACGTATGTTCACAACTGTTATT
1 GCTGATTTAAGATTGTGACCCTCGGTTTTCTAACAACTTGTTGACCTATGTTCACAATTGATATT
* * * * * * * *
102235227 TTTTACGGTTCGCTGATTTAAGGTCACGATCC-TAGTTTTCTGATAGCTCGTTGACCTATGTTCA
66 TTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTCA
* * * * * * * *
102235291 CAACTGATA-TTTTTATGGGCTATTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTG
131 CAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
102235355 A
196 A
102235356 TTCACGATCA
Statistics
Matches: 347, Mismatches: 73, Indels: 6
0.81 0.17 0.01
Matches are distributed among these distances:
226 45 0.13
227 31 0.09
228 270 0.78
229 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (228 bp):
GCTGATTTAAGATTGTGACCCTCGGTTTTCTAACAACTTGTTGACCTATGTTCACAATTGATATT
TTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTCA
CAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
ACCTACGTTCACATCTGATATTTTTTACTATCC
Found at i:102235357 original size:39 final size:36
Alignment explanation
Indices: 102235314--102235394 Score: 90
Period size: 39 Copynumber: 2.2 Consensus size: 36
102235304 TATGGGCTAT
102235314 TGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGC
1 TGATTTAAGATCACGACCCTCG-TTTT-TAA-AGCTCGC
* * **
102235353 TGATTCACGATCACGACTGTCGTTTTTAAAGCTCGC
1 TGATTTAAGATCACGACCCTCGTTTTTAAAGCTCGC
*
102235389 TAATTT
1 TGATTT
102235395 CTTCAACAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
36 11 0.31
37 3 0.08
38 4 0.11
39 18 0.50
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (36 bp):
TGATTTAAGATCACGACCCTCGTTTTTAAAGCTCGC
Found at i:102237483 original size:14 final size:14
Alignment explanation
Indices: 102237454--102237498 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
102237444 CTTAAATTCA
102237454 ACACTTAATGTTTTT
1 ACACTTAAT-TTTTT
* *
102237469 ATACTTATTTTTTT
1 ACACTTAATTTTTT
102237483 AACACTTAATTTTTT
1 -ACACTTAATTTTTT
102237498 A
1 A
102237499 AACATAGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.29, C:0.11, G:0.02, T:0.58
Consensus pattern (14 bp):
ACACTTAATTTTTT
Found at i:102237496 original size:16 final size:16
Alignment explanation
Indices: 102237453--102237502 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
102237443 ACTTAAATTC
*
102237453 AACACTTAATGTTTTT
1 AACACTTAATTTTTTT
*
102237469 -ATACTT-ATTTTTTT
1 AACACTTAATTTTTTT
*
102237483 AACACTTAATTTTTTA
1 AACACTTAATTTTTTT
102237499 AACA
1 AACA
102237503 TAGTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 7 0.25
15 10 0.36
16 11 0.39
ACGTcount: A:0.34, C:0.12, G:0.02, T:0.52
Consensus pattern (16 bp):
AACACTTAATTTTTTT
Found at i:102238120 original size:17 final size:17
Alignment explanation
Indices: 102238100--102238133 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
102238090 CTATGAAGAG
102238100 ATTTGAACTTAATCGTC
1 ATTTGAACTTAATCGTC
*
102238117 ATTTGAATTTAATCGTC
1 ATTTGAACTTAATCGTC
102238134 CAATCATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTGAACTTAATCGTC
Found at i:102239401 original size:12 final size:12
Alignment explanation
Indices: 102239384--102239412 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
102239374 CTTTCATTTT
102239384 GAAGAGTTAGAA
1 GAAGAGTTAGAA
102239396 GAAGAGTTAGAA
1 GAAGAGTTAGAA
102239408 GAAGA
1 GAAGA
102239413 AGAAGAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.34, T:0.14
Consensus pattern (12 bp):
GAAGAGTTAGAA
Found at i:102239410 original size:3 final size:3
Alignment explanation
Indices: 102239404--102239490 Score: 174
Period size: 3 Copynumber: 29.0 Consensus size: 3
102239394 AAGAAGAGTT
102239404 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
102239452 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
102239491 CAAACCTTAA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:102240375 original size:37 final size:37
Alignment explanation
Indices: 102240325--102240398 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
102240315 TAGGAAAATG
102240325 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
1 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
102240362 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
1 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
102240399 GTTGGAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (37 bp):
ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
Found at i:102247210 original size:40 final size:40
Alignment explanation
Indices: 102247048--102247215 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
102247038 TGAATGATAC
* * * * *
102247048 CCGGGCTAAGTCCCGAAGGGATTTATGCTAGTGATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
102247088 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
102247128 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
102247168 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
102247208 CC-GGCTAA
1 CCGGGCTAA
102247216 ATTCCGAAGA
Statistics
Matches: 102, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
39 8 0.08
40 90 0.88
41 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:102248810 original size:21 final size:21
Alignment explanation
Indices: 102248786--102248834 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
102248776 TCGGTGTCAT
102248786 GACACAAACAGAGGATGTCGC
1 GACACAAACAGAGGATGTCGC
*
102248807 GACACAAACAGAGGGTGTCGC
1 GACACAAACAGAGGATGTCGC
102248828 GACACAA
1 GACACAA
102248835 CCCTAAATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.39, C:0.24, G:0.29, T:0.08
Consensus pattern (21 bp):
GACACAAACAGAGGATGTCGC
Found at i:102254947 original size:30 final size:30
Alignment explanation
Indices: 102254913--102254988 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
102254903 TGGTTGACCC
* *
102254913 ATCCCTTTTCATAATTCGATAACCAAAGTT
1 ATCCCTTTTCATAATTCGACAACCAAAGCT
* * *
102254943 ATCCCTTTTCATAGTTCGACAGCCGAAGCT
1 ATCCCTTTTCATAATTCGACAACCAAAGCT
102254973 ATCCCTTTTCATAATT
1 ATCCCTTTTCATAATT
102254989 TGATGGTCGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGACAACCAAAGCT
Found at i:102255007 original size:30 final size:30
Alignment explanation
Indices: 102254973--102255050 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
102254963 AGCCGAAGCT
102254973 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* *
102255003 ATCCCTTTTCATTATTCGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
102255033 ATCCCTTTTCATAATTTG
1 ATCCCTTTTCATAATTTG
102255051 GTAGCCAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:102256621 original size:42 final size:42
Alignment explanation
Indices: 102256478--102256641 Score: 165
Period size: 42 Copynumber: 4.0 Consensus size: 42
102256468 AATCATACCA
* ** *
102256478 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATAACG
* * * * * *
102256520 ATG--ATAGCCCAGCTATGGTCTTACACG-ATTCTAATATCG
1 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATAACG
* * *
102256559 ATGCCATGTCCTAGACATGGTCTTACAAGAAATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATAACG
*
102256601 ATGCCATATCCCAGATATGGTCTTACACATAAA-CTCATAAC
1 ATGCCATATCCCAGATATGGTCTTACA-AGAAATCTCATAAC
102256642 CCTAATGTCA
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 12 0.12
40 21 0.21
41 18 0.18
42 44 0.44
43 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATAACG
Found at i:102258285 original size:40 final size:39
Alignment explanation
Indices: 102258240--102258447 Score: 245
Period size: 40 Copynumber: 5.2 Consensus size: 39
102258230 CGGATTACAA
102258240 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
102258280 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
102258320 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
102258360 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
102258400 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
102258440 CCGGATAT
1 CCGGATAT
102258448 CATTCAATTG
Statistics
Matches: 146, Mismatches: 21, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 1 0.01
40 145 0.99
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:102268595 original size:40 final size:40
Alignment explanation
Indices: 102268536--102268742 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
102268526 CAATTGAATG
* * * *
102268536 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
102268576 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* **
102268616 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
102268656 AAAT-CGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
102268695 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
102268735 ATATCCGG
1 ATATCCGG
102268743 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 34 0.24
40 107 0.76
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:102268700 original size:79 final size:80
Alignment explanation
Indices: 102268536--102268727 Score: 235
Period size: 79 Copynumber: 2.4 Consensus size: 80
102268526 CAATTGAATG
* * ** * * *
102268536 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCA
*
102268601 ATTGTGCTAGTGACT
66 ATTGTGCAAGTGACT
** *
102268616 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAAT-CGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCA
* *
102268680 TTTGTGCAAGTCG-TT
66 ATTGTGCAAGT-GACT
*
102268695 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
102268728 TGTGGTTATA
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 60 0.62
80 37 0.38
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAGTGACT
Found at i:102279292 original size:46 final size:46
Alignment explanation
Indices: 102279177--102279397 Score: 191
Period size: 46 Copynumber: 4.8 Consensus size: 46
102279167 CTATTAAAAT
* * * * *
102279177 CGAGGCCGACGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCT
1 CGAGGCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTCTCATCA
* *
102279223 CGTA-GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCA
1 CG-AGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT-CATCA
* * *
102279269 CGAGGCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCT
1 CGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATCA
* * * * *
102279315 CAATGCTGATGCCATGT-CTCAGGCATGGTCTTACACTGGCTCTCATAA
1 CGAGGCCGATG-CATGTCCT-AGACAT-GTCTTACACTGGCTCTCATCA
* *
102279363 TGTGGCCGATGCATGTCCTAGACATGTCTTACACT
1 CGAGGCCGATGCATGTCCTAGACATGTCTTACACT
102279398 AGTACACAAA
Statistics
Matches: 143, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 70 0.49
47 22 0.15
48 25 0.17
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (46 bp):
CGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATCA
Found at i:102279355 original size:94 final size:92
Alignment explanation
Indices: 102279135--102279399 Score: 259
Period size: 94 Copynumber: 2.8 Consensus size: 92
102279125 CCATCCAATA
** * * * * *
102279135 GATGCCATGTCCCAGACATGGTCTTACACTAACTATTAAAATCGAGGCCGACGCCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAA-CGAGGCCGATG-CATGTCCTAGA
* * * * *
102279200 CATGGTCTTACACT-G-ACACATCTC-GTAGCC
62 CAT-GTCTTACACTAGCTCTCGTCTCAAT-GCT
* *
102279230 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCACGAGGCCGATGCATGTCCTAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAACGAGGCCGATGCATGTCCTAGACAT
102279294 GTCTTACACTAGCTCTCGTCTCAATGCT
65 GTCTTACACTAGCTCTCGTCTCAATGCT
* * * *
102279322 GATGCCATGTCTCAGGCATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCTAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCTAGACA
102279387 TGTCTTACACTAG
64 TGTCTTACACTAG
102279400 TACACAAATA
Statistics
Matches: 144, Mismatches: 19, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
90 10 0.07
91 14 0.10
92 23 0.16
93 26 0.18
94 66 0.46
95 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCTAGACATG
TCTTACACTAGCTCTCGTCTCAATGCT
Found at i:102280816 original size:57 final size:57
Alignment explanation
Indices: 102280725--102280918 Score: 255
Period size: 57 Copynumber: 3.4 Consensus size: 57
102280715 CATATAACAA
* *
102280725 GATTACCAGTCCAGGCTAAATCCTTTTTGGAATATATGCTCAGAAGAGCTCAATTAG
1 GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAG
*
102280782 GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTTAGAAGAGCTCAATTAG
1 GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAG
* ** * * * * *
102280839 GATTACCAGTCTAGGCTAAATCTTAATTGTAACATATGCTC-GAGAGGGATTATATCAG
1 GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGA-AGAGCTCA-ATTAG
*
102280897 GATTACCAGTTCAGGCTAAATC
1 GATTACCAGTCCAGGCTAAATC
102280919 CCATCAGTAA
Statistics
Matches: 121, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
56 2 0.02
57 95 0.79
58 24 0.20
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (57 bp):
GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAG
Found at i:102294944 original size:15 final size:15
Alignment explanation
Indices: 102294924--102294953 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
102294914 ATTATGAAAG
*
102294924 ATATGTTTTGGATTA
1 ATATGTTTTGCATTA
102294939 ATATGTTTTGCATTA
1 ATATGTTTTGCATTA
102294954 GGGTTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.17, T:0.53
Consensus pattern (15 bp):
ATATGTTTTGCATTA
Found at i:102305422 original size:17 final size:17
Alignment explanation
Indices: 102305376--102305445 Score: 54
Period size: 17 Copynumber: 4.2 Consensus size: 17
102305366 TTTGTTCTAA
* *
102305376 ATTTTGTTTCATTTTTT
1 ATTTTATTTTATTTTTT
*
102305393 A--TTACTTTAATTTTTT
1 ATTTTA-TTTTATTTTTT
*
102305409 ATTTTATTTTATTTATT
1 ATTTTATTTTATTTTTT
* * *
102305426 AATTTATTTTCTTTTAT
1 ATTTTATTTTATTTTTT
102305443 ATT
1 ATT
102305446 ATACTGCATA
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
15 2 0.05
16 11 0.27
17 25 0.61
18 3 0.07
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.73
Consensus pattern (17 bp):
ATTTTATTTTATTTTTT
Found at i:102310911 original size:40 final size:40
Alignment explanation
Indices: 102310813--102311030 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
102310803 TGGATGATAA
* *
102310813 CCGGGATAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
102310854 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
102310894 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
102310934 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
102310974 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
102311013 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
102311031 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 101 0.64
41 23 0.15
42 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:102316699 original size:40 final size:40
Alignment explanation
Indices: 102316643--102316845 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
102316633 CGAAATTTAA
* * *
102316643 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
102316683 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
102316723 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * * *
102316763 CCAGATATAATAACTCACACAATTGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
102316802 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
102316842 CCGG
1 CCGG
102316846 TTATCATCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 1 0.01
39 31 0.22
40 109 0.77
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:102322318 original size:40 final size:40
Alignment explanation
Indices: 102322259--102322400 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
102322249 AAATTGAATG
* * *
102322259 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
102322299 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
102322339 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
102322379 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
102322401 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:102322401 original size:40 final size:39
Alignment explanation
Indices: 102322298--102322426 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
102322288 TGCTGGAAAT
* * *
102322298 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
102322338 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
102322378 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
102322418 TATATCCGG
1 TATATCCGG
102322427 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:102325674 original size:40 final size:40
Alignment explanation
Indices: 102325572--102325829 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
102325562 TGGATGATAA
*
102325572 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * * *
102325613 CTGGGATAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
102325653 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
102325693 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
102325733 CCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
102325773 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
102325812 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
102325830 TACTTGGCTT
Statistics
Matches: 196, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 140 0.71
41 22 0.11
42 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:102327658 original size:30 final size:30
Alignment explanation
Indices: 102327622--102327683 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
102327612 CTTAACAAGA
102327622 AAATGCCTTTAAAATAATAAAAAAATTAAC
1 AAATGCCTTTAAAATAATAAAAAAATTAAC
* *
102327652 AAATGCCTTTAAAATAGTAACAAAATTAAC
1 AAATGCCTTTAAAATAATAAAAAAATTAAC
102327682 AA
1 AA
102327684 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.26
Consensus pattern (30 bp):
AAATGCCTTTAAAATAATAAAAAAATTAAC
Found at i:102327738 original size:22 final size:22
Alignment explanation
Indices: 102327713--102327755 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
102327703 TATCCAAACA
102327713 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* * *
102327735 ATAATAATAAAATGGTAGCAA
1 ATAACAACAAAATAGTAGCAA
102327756 AATATGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:102327768 original size:22 final size:22
Alignment explanation
Indices: 102327712--102327768 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
102327702 ATATCCAAAC
* *
102327712 AATAACAACAAAATAGTAGCAA
1 AATAATAAGAAAATAGTAGCAA
* * *
102327734 CATAATAATAAAATGGTAGCAA
1 AATAATAAGAAAATAGTAGCAA
102327756 AAT-ATGAAGAAAA
1 AATAAT-AAGAAAA
102327769 AAAACAAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.61, C:0.09, G:0.12, T:0.18
Consensus pattern (22 bp):
AATAATAAGAAAATAGTAGCAA
Found at i:102328774 original size:3 final size:3
Alignment explanation
Indices: 102328766--102328790 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
102328756 AAGGTCTTAG
102328766 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
102328791 TGTGTTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:102342800 original size:29 final size:30
Alignment explanation
Indices: 102342758--102342816 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
102342748 ACTTAACAAG
102342758 CAAATGCTTATAAAATAATAA-AAAATTAA
1 CAAATGCTTATAAAATAATAACAAAATTAA
102342787 CAAATGCCTT-TAAAATAATAACAAAATTAA
1 CAAATG-CTTATAAAATAATAACAAAATTAA
102342817 TAATAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 17 0.61
30 11 0.39
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGCTTATAAAATAATAACAAAATTAA
Found at i:102347064 original size:18 final size:19
Alignment explanation
Indices: 102347041--102347076 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
102347031 TGATACCGAA
102347041 GAATA-TAAAAAACAAATG
1 GAATATTAAAAAACAAATG
*
102347059 GAATATTACAAAACAAAT
1 GAATATTAAAAAACAAAT
102347077 AATATTTGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.19
Consensus pattern (19 bp):
GAATATTAAAAAACAAATG
Found at i:102349325 original size:27 final size:28
Alignment explanation
Indices: 102349269--102349338 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
102349259 AAATTTGTAC
102349269 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
102349297 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
102349324 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
102349339 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:102349349 original size:27 final size:27
Alignment explanation
Indices: 102349269--102349350 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
102349259 AAATTTGTAC
* *
102349269 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
102349297 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
102349324 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
102349351 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:102357126 original size:27 final size:28
Alignment explanation
Indices: 102357070--102357139 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
102357060 AAATTTGTAC
102357070 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
102357098 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
102357125 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
102357140 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:102357150 original size:27 final size:27
Alignment explanation
Indices: 102357070--102357151 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
102357060 AAATTTGTAC
* *
102357070 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
102357098 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
102357125 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
102357152 GCTTTGAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:102359732 original size:27 final size:28
Alignment explanation
Indices: 102359675--102359744 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
102359665 AAATTTGTAC
**
102359675 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
102359703 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
102359730 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
102359745 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:102359753 original size:27 final size:27
Alignment explanation
Indices: 102359675--102359756 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
102359665 AAATTTGTAC
* *
102359675 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
102359703 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
102359730 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
102359757 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:102368049 original size:40 final size:40
Alignment explanation
Indices: 102367923--102368050 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 40
102367913 CAATTGAATG
* * * * * ***
102367923 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
* *
102367963 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
* *
102368003 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GCGGTT
102368043 ATATCCGG
1 ATATCCGG
102368051 TTGTATTCCG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 4 0.06
40 67 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
Found at i:102375905 original size:78 final size:80
Alignment explanation
Indices: 102375770--102375950 Score: 235
Period size: 78 Copynumber: 2.3 Consensus size: 80
102375760 TCGAATGATG
* *
102375770 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
102375835 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
102375849 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
102375911 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
102375928 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
102375951 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.57
79 26 0.29
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:102375960 original size:40 final size:39
Alignment explanation
Indices: 102375771--102375953 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
102375761 CGAATGATGT
* *
102375771 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
102375810 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
102375851 CCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
102375888 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
102375929 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
102375954 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:102377720 original size:10 final size:10
Alignment explanation
Indices: 102377705--102377729 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
102377695 GGTAACTGAC
102377705 CAAATAAGGT
1 CAAATAAGGT
102377715 CAAATAAGGT
1 CAAATAAGGT
102377725 CAAAT
1 CAAAT
102377730 GCTTACTCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (10 bp):
CAAATAAGGT
Found at i:102387562 original size:36 final size:36
Alignment explanation
Indices: 102387515--102387585 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
102387505 GAATTCGAAG
* *
102387515 ATGTCTCTTTTCATGCCCTTCCACCAGTATATTTTT
1 ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTTT
102387551 ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTT
1 ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTT
102387586 CTTTAAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.18, C:0.28, G:0.08, T:0.45
Consensus pattern (36 bp):
ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTTT
Found at i:102396770 original size:21 final size:21
Alignment explanation
Indices: 102396744--102396784 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
102396734 AACCTAAGAT
102396744 TTTAAATTCTTAAAAATCAAG
1 TTTAAATTCTTAAAAATCAAG
102396765 TTTAAATTCTTAAAAATCAA
1 TTTAAATTCTTAAAAATCAA
102396785 CTTATCATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (21 bp):
TTTAAATTCTTAAAAATCAAG
Found at i:102398935 original size:13 final size:13
Alignment explanation
Indices: 102398917--102398941 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102398907 TGTGGGTGCA
102398917 CACAGCCGTGTCG
1 CACAGCCGTGTCG
102398930 CACAGCCGTGTC
1 CACAGCCGTGTC
102398942 TGGCATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACAGCCGTGTCG
Found at i:102406689 original size:37 final size:37
Alignment explanation
Indices: 102406639--102406712 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
102406629 AGCTCGTAAC
*
102406639 TTACCACCAAAATATATAAAACAGAGTAACAAAAACA
1 TTACCACAAAAATATATAAAACAGAGTAACAAAAACA
102406676 TTACCACAAAAATATATAAAACAGAGTAACAAAAACA
1 TTACCACAAAAATATATAAAACAGAGTAACAAAAACA
102406713 CACACAGAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.61, C:0.18, G:0.05, T:0.16
Consensus pattern (37 bp):
TTACCACAAAAATATATAAAACAGAGTAACAAAAACA
Found at i:102406948 original size:35 final size:35
Alignment explanation
Indices: 102406909--102407032 Score: 162
Period size: 35 Copynumber: 3.5 Consensus size: 35
102406899 TATGTTCATG
*
102406909 CAATATAA-CTTCACATATAACCGAATATACAAGTT
1 CAATATAAGC-TCACATGTAACCGAATATACAAGTT
* *
102406944 CAATATAAGCTCACATGTAATCAAATACT-CAAGTT
1 CAATATAAGCTCACATGTAACCGAATA-TACAAGTT
* * *
102406979 CAATATAACCTCACATGCAGCCGAATATACAAGTT
1 CAATATAAGCTCACATGTAACCGAATATACAAGTT
102407014 CAATATAAGCTCACATGTA
1 CAATATAAGCTCACATGTA
102407033 CTTACCTATG
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
34 1 0.01
35 73 0.96
36 2 0.03
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.27
Consensus pattern (35 bp):
CAATATAAGCTCACATGTAACCGAATATACAAGTT
Found at i:102413107 original size:39 final size:39
Alignment explanation
Indices: 102413053--102413269 Score: 312
Period size: 39 Copynumber: 5.5 Consensus size: 39
102413043 TAATGGAGAA
*
102413053 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
102413092 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
102413131 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
102413169 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
102413208 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
102413247 TTATATTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
102413270 CATGGTTTGT
Statistics
Matches: 162, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 36 0.22
39 104 0.64
40 22 0.14
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:102413167 original size:77 final size:77
Alignment explanation
Indices: 102413052--102413269 Score: 330
Period size: 77 Copynumber: 2.8 Consensus size: 77
102413042 ATAATGGAGA
102413052 ATTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCTAAGTC-CGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
*
102413117 CATTCGTGTTGGT
65 CATTCATGTTGGT
102413130 ATTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
1 ATTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
102413195 ATTCATGTTGGT
66 ATTCATGTTGGT
* * * * *
102413207 GTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTATTATATTCGGGCTTAAAGTCCCG
1 ATTATATCCGGGCT-AAGT-CCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCCG
102413270 CATGGTTTGT
Statistics
Matches: 130, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
77 70 0.54
78 44 0.34
79 8 0.06
80 8 0.06
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (77 bp):
ATTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
ATTCATGTTGGT
Found at i:102419588 original size:39 final size:39
Alignment explanation
Indices: 102419534--102419696 Score: 223
Period size: 39 Copynumber: 4.3 Consensus size: 39
102419524 TAATGGAGAA
*
102419534 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
102419573 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
102419612 CTATATCCGGGCTAA-----G-AGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
102419645 TTATATCCGGGCTAAAGTCCTGCAGGC-TTTGTGCTGGTG
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
102419684 TTATATCCGGGCT
1 TTATATCCGGGCT
102419697 TAAAGTCGCG
Statistics
Matches: 113, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.26
34 3 0.03
39 77 0.68
40 4 0.04
ACGTcount: A:0.17, C:0.21, G:0.31, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:102419641 original size:72 final size:72
Alignment explanation
Indices: 102419556--102419696 Score: 230
Period size: 72 Copynumber: 2.0 Consensus size: 72
102419546 TAAGTCCCGA
102419556 AGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGCTATATCC
1 AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGC-TTCGTGCTGGTGCTATATCC
102419620 GGGCTAAG
65 GGGCTAAG
* * * *
102419628 AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCTGCAGGCTTTGTGCTGGTGTTATATCCG
1 AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGTGCTGGTGCTATATCCG
102419693 GGCT
66 GGCT
102419697 TAAAGTCGCG
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 53 0.83
73 11 0.17
ACGTcount: A:0.16, C:0.21, G:0.32, T:0.30
Consensus pattern (72 bp):
AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGTGCTGGTGCTATATCCG
GGCTAAG
Found at i:102419714 original size:40 final size:39
Alignment explanation
Indices: 102419636--102419723 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 39
102419626 AGAGGCATTC
102419636 GTGCTGGTGTTATATCCGGGCTAAAGTCCTGCAGGCTTT
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCTGCAGGCTTT
*
102419675 GTGCTGGTGTTATATCCGGGCTTAAAGTCGC-GCATGCTTT
1 GTGCTGGTGTTATATCCGGGC-TAAAGTC-CTGCAGGCTTT
*
102419715 GTGGTGGTG
1 GTGCTGGTG
102419724 ATTGGATTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 21 0.47
40 23 0.51
41 1 0.02
ACGTcount: A:0.14, C:0.18, G:0.34, T:0.34
Consensus pattern (39 bp):
GTGCTGGTGTTATATCCGGGCTAAAGTCCTGCAGGCTTT
Found at i:102423636 original size:40 final size:40
Alignment explanation
Indices: 102423567--102423783 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
102423557 AACCAAGTAA
* *
102423567 CTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGC
* *
102423606 CTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
102423646 CTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
102423686 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * *
102423726 CTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
102423766 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
102423784 TTATCATCCG
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 147 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:102427504 original size:24 final size:24
Alignment explanation
Indices: 102427477--102427680 Score: 315
Period size: 24 Copynumber: 8.6 Consensus size: 24
102427467 CTTATTATGT
* * *
102427477 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
102427501 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
102427525 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
102427549 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
102427573 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
102427597 TCGCACACATAGT---ATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
102427618 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
102427642 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
102427666 TCGCACACATAGTGC
1 TCGCACACATAGTGC
102427681 ATTTGAGATA
Statistics
Matches: 171, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
21 20 0.12
24 151 0.88
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:102427643 original size:69 final size:69
Alignment explanation
Indices: 102427477--102427678 Score: 314
Period size: 69 Copynumber: 2.9 Consensus size: 69
102427467 CTTATTATGT
* * * * *
102427477 TCGCACACATAGAGCTATAGCAAATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCTA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATA--G-TA
102427542 TAGTAAA
63 TAGTAAA
102427549 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTATAG
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTATAG
*
102427614 TGAA
66 TAAA
*
102427618 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGT
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGT
102427679 GCATTTGAGA
Statistics
Matches: 123, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
69 68 0.55
70 1 0.01
72 54 0.44
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.21
Consensus pattern (69 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTATAG
TAAA
Found at i:102427652 original size:93 final size:95
Alignment explanation
Indices: 102427477--102427680 Score: 322
Period size: 93 Copynumber: 2.2 Consensus size: 95
102427467 CTTATTATGT
* * *
102427477 TCGCACACATAGAGCTATAGCAAATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCTA
1 TCGCACACATAGTGCCATAGCAAATCGCACACATAG-GCTATAGCAAATCGCACACATAGTGCCA
102427542 TAGTAAATCGCACACATAGTGCCATAGTAAA
65 TAGTAAATCGCACACATAGTGCCATAGTAAA
* **
102427573 TCGCACACATAGTGCCATAGTAAATCGCACACATA-G-TATAGTGAATCGCACACATAGTGCCAT
1 TCGCACACATAGTGCCATAGCAAATCGCACACATAGGCTATAGCAAATCGCACACATAGTGCCAT
*
102427636 AGTAAATCGCACACATAGTGCCATAGTGAA
66 AGTAAATCGCACACATAGTGCCATAGTAAA
102427666 TCGCACACATAGTGC
1 TCGCACACATAGTGC
102427681 ATTTGAGATA
Statistics
Matches: 101, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
93 68 0.67
94 1 0.01
96 32 0.32
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.21
Consensus pattern (95 bp):
TCGCACACATAGTGCCATAGCAAATCGCACACATAGGCTATAGCAAATCGCACACATAGTGCCAT
AGTAAATCGCACACATAGTGCCATAGTAAA
Found at i:102438628 original size:40 final size:40
Alignment explanation
Indices: 102438558--102438775 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
102438548 AAACCAAGTA
* *
102438558 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
102438597 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
102438637 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
102438677 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
102438717 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
102438757 CCATCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
102438776 TTATCATCCG
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 14 0.08
40 151 0.92
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:102442447 original size:40 final size:40
Alignment explanation
Indices: 102442402--102442565 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 40
102442392 CGGAATTTTG
* * * *
102442402 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *** *
102442442 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
102442482 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
102442522 CCGGATAGAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCACAAATGCCTTCGGGTCTTAGC
102442562 CCGG
1 CCGG
102442566 GTATCATTCA
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 102 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102442546 original size:80 final size:80
Alignment explanation
Indices: 102442402--102442565 Score: 206
Period size: 80 Copynumber: 2.0 Consensus size: 80
102442392 CGGAATTTTG
* * * *
102442402 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTAGATAACTAGCACAAATG
*
102442467 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
102442482 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGA-TAGAATCACTAGCATAAA
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTAG-ATAACTAGCACAAA
102442545 TGCCTTCGGGACTTAGC
64 TGCCTTCGGGACTTAGC
102442562 CCGG
1 CCGG
102442566 GTATCATTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
79 2 0.03
80 68 0.94
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTAGATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:102443970 original size:66 final size:68
Alignment explanation
Indices: 102443894--102444080 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
102443884 TAGTACCACT
*
102443894 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
102443956 CACG
65 CACG
102443960 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
102444025 ATCACG
63 ATCACG
102444031 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
102444081 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:102444005 original size:71 final size:71
Alignment explanation
Indices: 102443917--102444080 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
102443907 CGATTTGTCT
102443917 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102443982 CTTTCA
66 CTTTCA
102443988 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102444053 CTTTCA
66 CTTTCA
102444059 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
102444081 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:102444118 original size:71 final size:70
Alignment explanation
Indices: 102443917--102444114 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
102443907 CGATTTGTCT
* * *
102443917 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
102443982 CTTTCA
65 CTTTCA
* * *
102443988 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
102444053 CTTTCA
65 CTTTCA
* *
102444059 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
102444115 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:102451536 original size:66 final size:68
Alignment explanation
Indices: 102451460--102451646 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
102451450 TAGTACCACT
*
102451460 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
102451522 CACG
65 CACG
102451526 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
102451591 ATCACG
63 ATCACG
102451597 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
102451647 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:102451571 original size:71 final size:71
Alignment explanation
Indices: 102451483--102451646 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
102451473 CGATTTGTCT
102451483 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102451548 CTTTCA
66 CTTTCA
102451554 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102451619 CTTTCA
66 CTTTCA
102451625 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
102451647 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:102451684 original size:71 final size:70
Alignment explanation
Indices: 102451483--102451680 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
102451473 CGATTTGTCT
* * *
102451483 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
102451548 CTTTCA
65 CTTTCA
* * *
102451554 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
102451619 CTTTCA
65 CTTTCA
* *
102451625 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
102451681 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:102460917 original size:40 final size:40
Alignment explanation
Indices: 102460868--102461034 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
102460858 TCTTCGGAAT
** * *
102460868 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
* * ** *
102460907 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
* *
102460947 TTAGCCCGGATATAA-AACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
* * *
102460986 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
102461026 TTAGCCCGG
1 TTAGCCCGG
102461035 GTATCATTCA
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 40 0.38
40 66 0.62
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
Found at i:102462931 original size:30 final size:30
Alignment explanation
Indices: 102462895--102463022 Score: 165
Period size: 30 Copynumber: 4.4 Consensus size: 30
102462885 GACAAGATTG
* * * * *
102462895 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
102462925 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
102462953 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
102462983 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
102463012 GCACTAAGTGT
1 GCACTAAGTGT
102463023 CGGATTCACT
Statistics
Matches: 89, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
27 2 0.02
28 22 0.25
29 17 0.19
30 46 0.52
31 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Done.