Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 327 of 438
Found at i:102462986 original size:58 final size:58
Alignment explanation
Indices: 102462895--102463022 Score: 168
Period size: 58 Copynumber: 2.2 Consensus size: 58
102462885 GACAAGATTG
* * * * * *
102462895 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
102462953 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
102463012 GCACTAAGTGT
1 GCACTAAGTGT
102463023 CGGATTCACT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.67
59 18 0.30
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:102470844 original size:30 final size:30
Alignment explanation
Indices: 102470808--102470938 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
102470798 GACAAGATTG
* * * * *
102470808 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
102470838 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
102470866 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
102470896 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
102470925 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
102470939 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:102470899 original size:58 final size:58
Alignment explanation
Indices: 102470808--102470938 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
102470798 GACAAGATTG
* * * * * *
102470808 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
102470866 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
102470925 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
102470939 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:102474032 original size:40 final size:40
Alignment explanation
Indices: 102473975--102474237 Score: 293
Period size: 40 Copynumber: 6.7 Consensus size: 40
102473965 CTAACGGGGT
* * * * *
102473975 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
102474015 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
102474055 TAAGTCCC-AAGGCATTTGTGCGAGTTACTAATTTCTGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
102474094 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * * *
102474134 TAAGCCCCAAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * *
102474174 TAAGTCCCGAAGGCATCTGTGCTAGTGACT-ATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
102474214 TAAG-ACCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
102474238 GGTTATATCC
Statistics
Matches: 191, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
38 8 0.04
39 46 0.24
40 136 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:102474119 original size:79 final size:79
Alignment explanation
Indices: 102473975--102474195 Score: 293
Period size: 79 Copynumber: 2.8 Consensus size: 79
102473965 CTAACGGGGT
* * * *
102473975 TAAGTCCCGAAGACATTTGTGCTAGTGATTAA-TTCCGAGCTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCAAAGGCATTTGTGCAAGTTA-TAATTTCCG-GCTAAGTCCCGAAGGCATTTGTGCGA
102474039 GTTACAAATTCCGGGC
64 GTTACAAATTCCGGGC
* * *
102474055 TAAGTCCC-AAGGCATTTGTGCGAGTTACTAATTTCTGGCTAAGTCCCGAAGGCTTTTGTGCGAG
1 TAAGTCCCAAAGGCATTTGTGCAAGTTA-TAATTTCCGGCTAAGTCCCGAAGGCATTTGTGCGAG
102474119 TTACAAATTCCGGGC
65 TTACAAATTCCGGGC
* * * *
102474134 TAAGCCCCAAAGGCATTTGTGCAAGTTATTATATCCGGGCTAAGTCCCGAAGGCATCTGTGC
1 TAAGTCCCAAAGGCATTTGTGCAAGTTATAATTTCC-GGCTAAGTCCCGAAGGCATTTGTGC
102474196 TAGTGACTAT
Statistics
Matches: 125, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 72 0.58
80 53 0.42
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (79 bp):
TAAGTCCCAAAGGCATTTGTGCAAGTTATAATTTCCGGCTAAGTCCCGAAGGCATTTGTGCGAGT
TACAAATTCCGGGC
Found at i:102476313 original size:48 final size:48
Alignment explanation
Indices: 102476184--102476612 Score: 424
Period size: 48 Copynumber: 9.0 Consensus size: 48
102476174 GAGGGTGAAT
* * * * *
102476184 TGCCGATGCCATGAT-CCAAACATGGTCTTACACTGGCTCACATTTCGA
1 TGCCGATGCCATG-TCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* ** * * *
102476232 -GTACGACACCGTGTCCCAGA-ATGGTCTTACACTAGCTCTCGTCTCAA
1 TG-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* * * *
102476279 TGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* *
102476327 TGCCGATGCCATGTCCTAGACAT-GTCTTACACTGGCTCTCATA--ATA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-A
* * *
102476373 TGGCCGATGTCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* * *
102476422 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCGT-ACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCATATCAA
* *
102476470 TACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* *** * *
102476518 TGCCAAAATCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TACAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-CAA
* * * * *
102476566 TGCCGATGCCATGTTCTAAACATGGTCTTACACTAGCACACATATCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
102476613 CTTAAATGTC
Statistics
Matches: 318, Mismatches: 50, Indels: 26
0.81 0.13 0.07
Matches are distributed among these distances:
45 1 0.00
46 2 0.01
47 75 0.24
48 236 0.74
49 3 0.01
50 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
Found at i:102477558 original size:16 final size:16
Alignment explanation
Indices: 102477537--102477571 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
102477527 GGCCATGCTA
102477537 TTAATAAAGGCATATT
1 TTAATAAAGGCATATT
102477553 TTAATAAAGGCATATT
1 TTAATAAAGGCATATT
102477569 TTA
1 TTA
102477572 TCTTTAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (16 bp):
TTAATAAAGGCATATT
Found at i:102480203 original size:32 final size:32
Alignment explanation
Indices: 102480159--102480224 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
102480149 GTGACATTGC
102480159 GTATCCCAAATAAATCTCTAGAATAATTTGAT
1 GTATCCCAAATAAATCTCTAGAATAATTTGAT
* *
102480191 GTATCCCGAATAAATCTTTAGAATAATTTGAT
1 GTATCCCAAATAAATCTCTAGAATAATTTGAT
102480223 GT
1 GT
102480225 CTCTTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (32 bp):
GTATCCCAAATAAATCTCTAGAATAATTTGAT
Found at i:102495787 original size:43 final size:43
Alignment explanation
Indices: 102495739--102495908 Score: 193
Period size: 43 Copynumber: 4.0 Consensus size: 43
102495729 GCTATCGAGA
102495739 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
102495782 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* * * * * * *
102495826 T-CGATTTCGTGTAAGACCCTTTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
102495867 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
102495909 CGAGCTTATG
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 94 0.89
44 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:102495894 original size:86 final size:85
Alignment explanation
Indices: 102495749--102495907 Score: 221
Period size: 86 Copynumber: 1.9 Consensus size: 85
102495739 TGTGATTACA
* * * * *
102495749 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATGTCTGGGACAT
1 TGTAAGACCATGTCTGGGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATCTGGGACA-
102495814 TGGCATTGTTAATCGATTTCG
65 TGGCATTGTTAATCGATTTCG
* * *
102495835 TGTAAGACCCTTTCTGGGACAGTGGCATCG-ATATGTGATAACATGTAAGACCATATCTGGGATA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGTAT-TGTGATAACATGTAAGACCATATCTGGGACA
102495899 TGGCATTGT
65 TGGCATTGT
102495908 ACGAGCTTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 11 0.17
86 53 0.83
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (85 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATCTGGGACAT
GGCATTGTTAATCGATTTCG
Found at i:102507540 original size:45 final size:45
Alignment explanation
Indices: 102507425--102507545 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 45
102507415 TGATATGTGT
* * *
102507425 GCTAGTGTAAGACATGTCTGGGACATGCATTAGTCACAGTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCA-TAGGCAAAGTACGAGA
* * *
102507471 GCCAGTGTAAGACATATCTAGGACATGCAT-GGCATTAAG-ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGGCA--AAGTACGAGA
*
102507516 GCTAGTGTAAGACATGTTTGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCAT
102507546 CGGCCTCGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
44 3 0.05
45 32 0.51
46 28 0.44
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATAGGCAAAGTACGAGA
Found at i:102507713 original size:48 final size:49
Alignment explanation
Indices: 102507611--102507729 Score: 125
Period size: 48 Copynumber: 2.4 Consensus size: 49
102507601 TGTAGTGTGT
* ** *
102507611 CAGTGTAAGACTTGTCTGGGATATGGTATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACATGTCTGGGATATGACATCGACACCGATAGATGAAAGC
* * **
102507660 CAGTGTAAGAC-TGTCTGGGATATGACATCGGC-CTCGCTCTATGAAAGC
1 CAGTGTAAGACATGTCTGGGATATGACATCGACAC-CGATAGATGAAAGC
*
102507708 TAGTGTAAGACCATGTCTGGGA
1 CAGTGTAAGA-CATGTCTGGGA
102507730 CATGGCGTCG
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.02
48 37 0.63
49 12 0.20
50 9 0.15
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACATGTCTGGGATATGACATCGACACCGATAGATGAAAGC
Found at i:102509869 original size:48 final size:48
Alignment explanation
Indices: 102509817--102509963 Score: 181
Period size: 48 Copynumber: 3.1 Consensus size: 48
102509807 ACATGATAGG
* * * * *
102509817 ATGCCAATACCATATCCCGGATATGGTCTTACATAGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
* *
102509865 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-A-GTAGGTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATA--TCA
**
102509913 ATGCCAATGCCATGTCTTAGACATGGTCTTACATGGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
102509961 ATG
1 ATG
102509964 ATGATAGCCC
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
46 2 0.02
47 1 0.01
48 78 0.93
49 1 0.01
50 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
Found at i:102510967 original size:2 final size:2
Alignment explanation
Indices: 102510960--102510989 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
102510950 CGGCTCTAGC
102510960 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102510990 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102511751 original size:39 final size:39
Alignment explanation
Indices: 102511704--102511832 Score: 147
Period size: 39 Copynumber: 3.3 Consensus size: 39
102511694 ATCCGGGCTA
*
102511704 AGTCCCGAAGGCTTTTGTGCTAAGTGA-CTAAACCGGGTT
1 AGTCCCGAAGGCTTTTGTGC-AAGTGACCAAAACCGGGTT
* * *
102511743 -GATCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTT
1 AG-TCCCGAAGGCTTTTGTGCAAGTGACCAAAACCGGGTT
* * *
102511782 AGTCCCGAAGGCATTT-TGCGAGTTACCAAAACCGGGTT
1 AGTCCCGAAGGCTTTTGTGCAAGTGACCAAAACCGGGTT
102511820 AAGTCCCGAAGGC
1 -AGTCCCGAAGGC
102511833 ATTCGTGCGA
Statistics
Matches: 82, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
38 27 0.33
39 54 0.66
40 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
AGTCCCGAAGGCTTTTGTGCAAGTGACCAAAACCGGGTT
Found at i:102511827 original size:78 final size:80
Alignment explanation
Indices: 102511696--102511924 Score: 232
Period size: 78 Copynumber: 2.9 Consensus size: 80
102511686 CGAATGGTAT
** * * * * *
102511696 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGA-CTAAACCGGGTTGA-TCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TCACCAAAACCGGGTTAAGTCCCGAAGGCATTC
102511759 GTGCGAGTTACCAAAA
65 GTGCGAGTTACCAAAA
* * * *
102511775 CCGGG-TTAGTCCCGAAGGC-ATTTTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
* *
102511838 TGCGAGTTACTAAAT
66 TGCGAGTTACCAAAA
* * * * * * *
102511853 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
*
102511918 AGCGAGT
66 TGCGAGT
102511925 CGCTATATCC
Statistics
Matches: 123, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
76 2 0.02
77 18 0.15
78 45 0.37
79 17 0.14
80 41 0.33
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAAA
Found at i:102511857 original size:40 final size:39
Alignment explanation
Indices: 102511694--102511910 Score: 208
Period size: 40 Copynumber: 5.5 Consensus size: 39
102511684 TTCGAATGGT
* * * *
102511694 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGC-ATTGTGC-GAGTTACTAA
* *
102511735 A-CCGGGTTGA-TCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAA
* * *
102511773 AACCGGGTT-AGTCCCGAAGGCATTTTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAA
*
102511811 AACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAA
* * * *
102511851 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGTTAAGTCCCGAAGGC-ATTGTGCGAGTTACTA-A
* *
102511892 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
102511911 ACAATCGAGC
Statistics
Matches: 153, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
38 33 0.22
39 49 0.32
40 65 0.42
41 6 0.04
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAA
Found at i:102511931 original size:40 final size:40
Alignment explanation
Indices: 102511696--102511936 Score: 154
Period size: 40 Copynumber: 6.1 Consensus size: 40
102511686 CGAATGGTAT
* ** * * *
102511696 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTA-AA
1 CCGGGCTATGTCCCGAAGGCAATCGTGC-GAGTCACTATAA
* * * * *
102511736 CCGGG-T-TGATCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTATG-TCCCGAAGGCAATCGTGCGAGTCACTATAA
* ** * * *
102511775 CCGGGTTA-GTCCCGAAGGC-ATTTTGCGAGTTACCAAAA
1 CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * *
102511813 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
1 CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* *
102511852 TCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCT-ATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * *
102511893 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
102511933 CCGG
1 CCGG
102511937 TTAAATTCCG
Statistics
Matches: 168, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
38 32 0.19
39 50 0.30
40 83 0.49
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
Found at i:102511945 original size:80 final size:79
Alignment explanation
Indices: 102511784--102511936 Score: 180
Period size: 80 Copynumber: 1.9 Consensus size: 79
102511774 ACCGGGTTAG
* * * * * * * *
102511784 TCCCGAAGGCATTTTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 TCCCGAAGGCATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCACT
102511849 AAATCCGGGCTAAT
66 AAATCCGGGCTAAT
* * * *
102511863 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGC
1 TCCCGAAGGC-ATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
*
102511928 TATATCCGG
65 TAAATCCGG
102511937 TTAAATTCCG
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 10 0.17
80 50 0.83
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (79 bp):
TCCCGAAGGCATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCACT
AAATCCGGGCTAAT
Found at i:102519851 original size:41 final size:41
Alignment explanation
Indices: 102519772--102519992 Score: 250
Period size: 41 Copynumber: 5.4 Consensus size: 41
102519762 CGAATGGTAT
* * *
102519772 CCGGGCTAAGTCCCGAAGGC-TTTTGTGCTAAGTGACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGC-GAGTTACCAAAA
* *
102519813 TCGGGTTGAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
*
102519854 CCGGGTTGAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
* * *
102519895 CCGGGTTAAGTCCCGAAGGCA-TTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
* * * * * * *
102519935 CCGGGCTAATTCCCGAAGGCA-ATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
* *
102519975 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
102519993 ACAATCGAGC
Statistics
Matches: 159, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 64 0.40
41 87 0.55
42 8 0.05
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (41 bp):
CCGGGTTAAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
Found at i:102520013 original size:40 final size:40
Alignment explanation
Indices: 102519822--102520013 Score: 138
Period size: 40 Copynumber: 4.8 Consensus size: 40
102519812 ATCGGGTTGA
* * * * * *
102519822 GTCCCGAAGGCATTTTGTGCGAGTTACCAAAACCGGGTTGA-
1 GTCCCGAAGGCA-ATCGTGCGAGTCACTATAACCGGGCT-AT
* * * * * * *
102519863 GTCCCGAAGGCATTTTGTGCGAGTTACCAAAACCGGGTTAA
1 GTCCCGAAGGCA-ATCGTGCGAGTCACTATAACCGGGCTAT
* *
102519904 GTCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGGCTAAT
1 GTCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGGCT-AT
* *
102519945 -TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTAT
1 GTCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAT
* * *
102519984 GTCCCGAAGACAATCGAGCGAGTCGCTATA
1 GTCCCGAAGGCAATCGTGCGAGTCACTATA
102520014 TCCGATTAAA
Statistics
Matches: 133, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
39 4 0.03
40 75 0.56
41 54 0.41
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
GTCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAT
Found at i:102520017 original size:80 final size:81
Alignment explanation
Indices: 102519770--102520017 Score: 194
Period size: 80 Copynumber: 3.1 Consensus size: 81
102519760 TTCGAATGGT
* * * * * * * *
102519770 ATCCGGGCTAAGTCCCGAAGGC-TTTTGTGCTAAGTGACCAAAATCGGGTTGAGTCCCGAAGGCA
1 ATCCGGGCTAATTCCCGAAGGCATATTGTGCGAA-TCACCAAAACCGGGCTAAGTCCCGAAGACA
* * * * *
102519834 TTTTGTGCGAGTTACCAA
65 -ATCGAGCGAGTCACTAA
* * * * * * * * * *
102519852 AACCGGGTTGAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGCTAATTCCCGAAGGCATATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAA
* *
102519917 TCGTGCGAGTTACTAA
66 TCGAGCGAGTCACTAA
* * *
102519933 ATCCGGGCTAATTCCCGAAGGCA-ATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAA
1 ATCCGGGCTAATTCCCGAAGGCATATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAA
* *
102519997 TCGAGCGAGTCGCTAT
66 TCGAGCGAGTCACTAA
102520013 ATCCG
1 ATCCG
102520018 ATTAAATTCC
Statistics
Matches: 138, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
80 49 0.36
81 34 0.25
82 46 0.33
83 9 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (81 bp):
ATCCGGGCTAATTCCCGAAGGCATATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAA
TCGAGCGAGTCACTAA
Found at i:102523456 original size:13 final size:13
Alignment explanation
Indices: 102523440--102523466 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
102523430 TTGTGAACTT
102523440 TCCCCTTGAGCCC
1 TCCCCTTGAGCCC
102523453 TCCCCTTGAGCCC
1 TCCCCTTGAGCCC
102523466 T
1 T
102523467 TAATGTATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.52, G:0.15, T:0.26
Consensus pattern (13 bp):
TCCCCTTGAGCCC
Found at i:102527603 original size:11 final size:11
Alignment explanation
Indices: 102527583--102527612 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
102527573 CTTTTATGCT
102527583 TATCATTATTG
1 TATCATTATTG
*
102527594 TATTATTATTG
1 TATCATTATTG
102527605 TATCATTA
1 TATCATTA
102527613 ACTTTATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (11 bp):
TATCATTATTG
Found at i:102529360 original size:27 final size:27
Alignment explanation
Indices: 102529320--102529374 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
102529310 TAGCCAATGG
*
102529320 TGGTGTCCTGCAAGCAGTTCAACCTTA
1 TGGTGTCCTACAAGCAGTTCAACCTTA
102529347 TGGTGTCCTACAAGCAGTTCAACCTTA
1 TGGTGTCCTACAAGCAGTTCAACCTTA
102529374 T
1 T
102529375 CTACTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (27 bp):
TGGTGTCCTACAAGCAGTTCAACCTTA
Found at i:102530480 original size:53 final size:53
Alignment explanation
Indices: 102530422--102530527 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
102530412 TTTAGGTCTT
102530422 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
1 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
102530475 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
1 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
102530528 TTTATTACTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (53 bp):
AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
Found at i:102534434 original size:123 final size:122
Alignment explanation
Indices: 102534217--102534512 Score: 438
Period size: 123 Copynumber: 2.4 Consensus size: 122
102534207 AAGTGTTTGA
* *
102534217 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATACAA--AAAAAAAGGGTAATATGT
1 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATA-AAGGGAAAAAAGGGTAAAATGT
* * *
102534280 AAGTAAAGGAGTAAAGTAAATAGTGTAAATTTTGTTTTGAAGTGTTTGGAAAAATTGG
65 AAGTAAAGGACTAAAGTAAATAGTGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
** *
102534338 AAAACTGTGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGGGAAAAAGGGGTAAAATGT
1 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATAAA-GGGAAAAAAGGGTAAAATGT
102534403 AAGTAAATGG-CTAAAGTAAACTA-TGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
65 AAGTAAA-GGACTAAAGTAAA-TAGTGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
* *
102534461 AAAACTACAATAGAATCTTTTAGTACAATCATTCAACAAATAAAGGGAAAAA
1 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGGAAAAA
102534513 TTTGAGTATG
Statistics
Matches: 158, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
120 2 0.01
121 40 0.25
122 8 0.05
123 104 0.66
124 4 0.03
ACGTcount: A:0.46, C:0.08, G:0.18, T:0.29
Consensus pattern (122 bp):
AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGGAAAAAAGGGTAAAATGTA
AGTAAAGGACTAAAGTAAATAGTGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
Found at i:102535041 original size:19 final size:21
Alignment explanation
Indices: 102535006--102535050 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
102534996 ATTTATGTTT
*
102535006 CATT-TTTTGAAT-TTTTTTA
1 CATTATTTTGAATGTTTTATA
102535025 CATTATTTT-AATGTTTTATA
1 CATTATTTTGAATGTTTTATA
102535045 -ATTATT
1 CATTATT
102535051 ATTTTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (21 bp):
CATTATTTTGAATGTTTTATA
Found at i:102537558 original size:42 final size:42
Alignment explanation
Indices: 102537495--102537627 Score: 176
Period size: 42 Copynumber: 3.2 Consensus size: 42
102537485 TATTTTTGCC
* * * *
102537495 CACACGAGCAGAGACAGGGGCATGTGTCTCAGTCATGTGTGA
1 CACACGGGCAGAGACACGGGCATGTGTCTCAGTCGTGTATGA
* **
102537537 CACACGGGCAGAAACACGGGCATGTGTCTCAACCGTGTATGA
1 CACACGGGCAGAGACACGGGCATGTGTCTCAGTCGTGTATGA
* * *
102537579 CACACGGGCTGAGATACGGGCATGTCTCTCAGTCGTGTATGA
1 CACACGGGCAGAGACACGGGCATGTGTCTCAGTCGTGTATGA
102537621 CACACGG
1 CACACGG
102537628 TTTTGTTACA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 78 1.00
ACGTcount: A:0.26, C:0.25, G:0.31, T:0.19
Consensus pattern (42 bp):
CACACGGGCAGAGACACGGGCATGTGTCTCAGTCGTGTATGA
Found at i:102540069 original size:41 final size:40
Alignment explanation
Indices: 102540016--102540185 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 40
102540006 AGTCCGACTC
* *
102540016 TTAG-CACCGGCTCAAAATCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
102540055 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
102540095 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
*
102540140 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGAA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
102540179 TTTAGAC
1 -TTAGAC
102540186 CCCGATTAGC
Statistics
Matches: 105, Mismatches: 12, Indels: 26
0.73 0.08 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 49 0.47
42 19 0.18
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:102549580 original size:25 final size:25
Alignment explanation
Indices: 102549545--102549800 Score: 377
Period size: 25 Copynumber: 10.2 Consensus size: 25
102549535 TAAACTTGTT
*
102549545 AATTTGCTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
**
102549570 AATTTGTTCTTAATAATTCAAGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
102549595 AATTTGTTCTTAATAATTCCAGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* * *
102549620 AATTTGCTCTTAACAATTTCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
102549645 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
102549670 AATTTGCTCTTAATAATTCCGATTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
102549695 AATTTGTTCTTAATAATTCCGGCTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
102549720 AATTTGTTCTTAATAATTCTGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
102549745 AATTTGTTCTTAATAATTTCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* * *
102549770 AATTTGCTCTTAATATTTTCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
102549795 AATTTG
1 AATTTG
102549801 CCCTTATTAT
Statistics
Matches: 209, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 209 1.00
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (25 bp):
AATTTGTTCTTAATAATTCCGGTTA
Found at i:102549821 original size:25 final size:25
Alignment explanation
Indices: 102549618--102549823 Score: 72
Period size: 25 Copynumber: 8.2 Consensus size: 25
102549608 TAATTCCAGT
* * * **
102549618 TAAATTTGCTCTTAACAATTTCGGT
1 TAAATTTGCCCTTAATATTTTCGAA
** * * **
102549643 TAAATTTGTTCTTAATAATTCCGGT
1 TAAATTTGCCCTTAATATTTTCGAA
* * * *
102549668 TAAATTTGCTCTTAATAATTCCGAT
1 TAAATTTGCCCTTAATATTTTCGAA
** * * **
102549693 TAAATTTGTTCTTAATAATTCCGGC
1 TAAATTTGCCCTTAATATTTTCGAA
** * **
102549718 TAAATTTGTTCTTAATA-ATTCTGGT
1 TAAATTTGCCCTTAATATTTTC-GAA
** * **
102549743 TAAATTTGTTCTTAATAATTTCGGT
1 TAAATTTGCCCTTAATATTTTCGAA
* **
102549768 TAAATTTGCTCTTAATATTTTCGGT
1 TAAATTTGCCCTTAATATTTTCGAA
* *
102549793 TAAATTTGCCCTTATTATTTTTGAA
1 TAAATTTGCCCTTAATATTTTCGAA
102549818 TAAATT
1 TAAATT
102549824 ACTTAGTTGA
Statistics
Matches: 160, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
24 2 0.01
25 155 0.97
26 3 0.02
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.49
Consensus pattern (25 bp):
TAAATTTGCCCTTAATATTTTCGAA
Found at i:102553974 original size:45 final size:45
Alignment explanation
Indices: 102553910--102554129 Score: 340
Period size: 45 Copynumber: 5.0 Consensus size: 45
102553900 GGTGTTACAT
* *
102553910 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
102553955 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
102554000 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
102554045 TACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
102554090 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
102554130 ATGAATTCGG
Statistics
Matches: 167, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
42 12 0.07
43 17 0.10
44 4 0.02
45 133 0.80
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:102557518 original size:26 final size:25
Alignment explanation
Indices: 102557489--102557596 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 25
102557479 TGGTACAAAT
102557489 TGATAATGCGTTAGGTAAATGTTCCA
1 TGATAATG-GTTAGGTAAATGTTCCA
*
102557515 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
102557541 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
102557567 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
102557593 TGAT
1 TGAT
102557597 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 1 0.01
26 73 0.96
27 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:102557554 original size:52 final size:52
Alignment explanation
Indices: 102557489--102557596 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
102557479 TGGTACAAAT
*
102557489 TGATAATGCGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGCGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
* * *
102557541 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGCGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
102557593 TGAT
1 TGAT
102557597 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGCGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
Found at i:102559166 original size:27 final size:26
Alignment explanation
Indices: 102559126--102559266 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
102559116 AGGAAGCGTC
*
102559126 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
102559153 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
102559180 CTGGTGGCTATGCCACGATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
102559207 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
102559234 CTAGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
102559261 CTGGTG
1 CTGGTG
102559267 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 86 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:102559208 original size:54 final size:53
Alignment explanation
Indices: 102559126--102559266 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
102559116 AGGAAGCGTC
102559126 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
102559180 CTGGTGGCTATGCCACGATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
102559234 CTAGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
102559267 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:102566408 original size:30 final size:30
Alignment explanation
Indices: 102566372--102566472 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
102566362 GACAAGATTG
* * *
102566372 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
102566402 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
102566430 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
102566459 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
102566473 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:102566484 original size:29 final size:28
Alignment explanation
Indices: 102566401--102566476 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
102566391 AAAATTGTAC
* *
102566401 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
102566429 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
102566458 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
102566477 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:102574262 original size:30 final size:30
Alignment explanation
Indices: 102574226--102574326 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
102574216 GACAAGATTG
* * *
102574226 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
102574256 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
102574284 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
102574313 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
102574327 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:102574338 original size:29 final size:28
Alignment explanation
Indices: 102574255--102574330 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
102574245 AAAATTGTAC
* *
102574255 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
102574283 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
102574312 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
102574331 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:102576464 original size:40 final size:40
Alignment explanation
Indices: 102576418--102576582 Score: 137
Period size: 40 Copynumber: 4.2 Consensus size: 40
102576408 CGGAGTTTAA
** *
102576418 CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAGCTACTCGCACAAACGCCTTCGGGACTTAGC
* * * *
102576458 CCGGATAT-GATAACCCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGCT-ACTCGCACAAACGCCTTCGGGACTTAGC
* *
102576498 CCGGATATCA-CAACTCGCACAATCGCCTTCGGG-CTTAGC
1 CCGGATAT-AGCTACTCGCACAAACGCCTTCGGGACTTAGC
***
102576537 CCGGATAT--CATATCTCGCACATTTGCCTTCGGG-CTTAGC
1 CCGGATATAGC-TA-CTCGCACAAACGCCTTCGGGACTTAGC
102576576 CC-GATAT
1 CCGGATAT
102576583 CACAATTCGC
Statistics
Matches: 104, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
37 1 0.01
38 6 0.06
39 41 0.39
40 56 0.54
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGCTACTCGCACAAACGCCTTCGGGACTTAGC
Found at i:102576542 original size:79 final size:78
Alignment explanation
Indices: 102576441--102576595 Score: 213
Period size: 79 Copynumber: 2.0 Consensus size: 78
102576431 CTCGTTCAAA
*
102576441 CGCCTTCGGGACATAGCCCGGATATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCC-GATAT
102576506 CACAACTCGCACAAT
64 CACAACTCGCACAAT
* * * ** *
102576521 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGCTTAGCCCGATATCA
1 CGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGATATCA
*
102576585 CAATTCGCACA
66 CAACTCGCACA
102576596 TTCATACACA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
77 17 0.25
78 7 0.10
79 33 0.49
80 10 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (78 bp):
CGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGATATCA
CAACTCGCACAAT
Found at i:102576554 original size:39 final size:40
Alignment explanation
Indices: 102576441--102576595 Score: 183
Period size: 39 Copynumber: 4.0 Consensus size: 40
102576431 CTCGTTCAAA
* * *
102576441 CGCCTTCGGGACATAGCCCGGATATGATAACCCGCACAAAT
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCAC-AAT
* *
102576482 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* *
102576521 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACATT
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* * *
102576560 TGCCTTCGGG-CTTAGCCC-GATATCACAATTCGCACA
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
102576596 TTCATACACA
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
38 15 0.15
39 45 0.45
40 40 0.40
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (40 bp):
CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
Found at i:102584578 original size:40 final size:38
Alignment explanation
Indices: 102584519--102584711 Score: 224
Period size: 39 Copynumber: 4.9 Consensus size: 38
102584509 TCGTTCAAAC
* * * *
102584519 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
102584559 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
102584598 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATT
1 -GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
102584637 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA-AT
* *
102584676 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
102584712 TTCATACACA
Statistics
Matches: 138, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
38 33 0.24
39 66 0.48
40 39 0.28
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:102584670 original size:77 final size:78
Alignment explanation
Indices: 102584518--102584713 Score: 252
Period size: 77 Copynumber: 2.5 Consensus size: 78
102584508 CTCGTTCAAA
* * * * * *
102584518 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCAC-ATTGCCTTCGGGACTTAACCCGGATAT
102584583 CACAACTCGCACAAT
64 CACAACTCGCACAAT
*
102584598 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGG-CTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCGGATATCA
* *
102584662 CAATTCGCACATT
66 CAACTCGCACAAT
* *
102584675 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
102584714 CATACACATC
Statistics
Matches: 104, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
77 60 0.58
78 13 0.12
79 21 0.20
80 10 0.10
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (78 bp):
CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAAT
Found at i:102584712 original size:39 final size:39
Alignment explanation
Indices: 102584558--102584713 Score: 235
Period size: 39 Copynumber: 4.0 Consensus size: 39
102584548 CCCGCACAAA
* * *
102584558 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
* *
102584598 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACA-T
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
102584636 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
102584675 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
102584714 CATACACATC
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
38 34 0.32
39 64 0.60
40 9 0.08
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:102588970 original size:27 final size:27
Alignment explanation
Indices: 102588940--102589024 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
102588930 CTAATGGCCG
102588940 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
** * **
102588967 ATGTGATG-A-G-GCCTAATG---GCCG
1 ATGTGATGAATGTG-AAAATGTATACAT
102588989 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
102589016 ATGTGATGA
1 ATGTGATGA
102589025 GGCCTAATGG
Statistics
Matches: 41, Mismatches: 10, Indels: 14
0.63 0.15 0.22
Matches are distributed among these distances:
22 9 0.22
23 1 0.02
24 6 0.15
25 6 0.15
26 1 0.02
27 18 0.44
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAATGTATACAT
Found at i:102589167 original size:49 final size:49
Alignment explanation
Indices: 102588914--102589164 Score: 421
Period size: 49 Copynumber: 5.1 Consensus size: 49
102588904 GTACATAATA
102588914 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
102588963 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
102589012 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
102589061 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
102589110 ATATATATGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
102589159 ATATAT
1 ATATAT
102589165 ATGTGGTAAA
Statistics
Matches: 195, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 195 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:102589288 original size:37 final size:36
Alignment explanation
Indices: 102589233--102589319 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
102589223 AACTTGGAAA
102589233 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
102589271 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
102589308 TATGTCCGGGTA
1 TATGTCCGGGTA
102589320 AGACTTTGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:102591227 original size:26 final size:26
Alignment explanation
Indices: 102591198--102591305 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
102591188 TGGTATAAAT
102591198 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
102591224 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102591250 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102591276 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102591302 TGAT
1 TGAT
102591306 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:102592960 original size:27 final size:26
Alignment explanation
Indices: 102592920--102593060 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
102592910 AGGAAGTGTC
*
102592920 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
102592947 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
102592974 CTAGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
102593001 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
102593028 CTAGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
102593055 CTGGTG
1 CTGGTG
102593061 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 10 0.10
27 84 0.88
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:102593005 original size:54 final size:53
Alignment explanation
Indices: 102592923--102593060 Score: 222
Period size: 54 Copynumber: 2.5 Consensus size: 53
102592913 AAGTGTCCTG
*
102592923 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTA
102592977 GTGGCTATGCCACGATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTA
1 GTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTA
* *
102593031 GTGGCTCTGCCACAATATCTGTATCTGGTG
1 GTGGCTATGCCACATTATCTG-ATCTGGTG
102593061 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
GTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTA
Found at i:102601916 original size:48 final size:47
Alignment explanation
Indices: 102601864--102602036 Score: 256
Period size: 48 Copynumber: 3.6 Consensus size: 47
102601854 CATCCTTGCC
* *
102601864 GATGCCATGTTCCAGACATGGTCTTACACTGGCACACATATCATCGT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGT
* * *
102601911 GGATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCAAAGCA
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG-T
*
102601960 GATGCCATGTCCCAGACATGGTCTTACACTGGCACAGATATCAACGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG-T
*
102602008 GATGCCATGTCCCAGACATGGTTTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
102602037 CGGCTCTCAT
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 114 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGT
Found at i:102602061 original size:96 final size:96
Alignment explanation
Indices: 102601860--102602083 Score: 290
Period size: 96 Copynumber: 2.3 Consensus size: 96
102601850 CTCACATCCT
* * *
102601860 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCACACATATCATCGTGGATGCCATGTCCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGTGGATGCCATGTCCC
**
102601925 AGACATGGTCTTACATTGGCACACATATCAA
66 AGACATGGTCTTACACCGGCACACATATCAA
* *
102601956 AG-CAGATGCCATGTCCCAGACATGGTCTTACACTGGCACAGATATCAACGCT-GATGCCATGTC
1 TGCCA-ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG-TGGATGCCATGTC
* * * * **
102602019 CCAGACATGGTTTTACACCGGCTCTCATCTGGA
64 CCAGACATGGTCTTACACCGGCACACATATCAA
*
102602052 TGCCAATGCCATATCCCAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA
102602084 TGAGACCTCA
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
95 1 0.01
96 106 0.96
97 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (96 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGTGGATGCCATGTCCC
AGACATGGTCTTACACCGGCACACATATCAA
Found at i:102604291 original size:3 final size:3
Alignment explanation
Indices: 102604278--102604310 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
102604268 GTCAAAATAT
102604278 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
102604311 GTATACAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:102607523 original size:26 final size:25
Alignment explanation
Indices: 102607473--102607529 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
102607463 ATTTTTGGTC
*
102607473 TCTTTTTGGATGTTCTTCTTTCTTT
1 TCTTTTTGGAGGTTCTTCTTTCTTT
*
102607498 TCTTTTTGGGGGTT-TTCTTTGGCTTT
1 TCTTTTTGGAGGTTCTTCTTT--CTTT
102607524 TCTTTT
1 TCTTTT
102607530 AGGATTGTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 6 0.21
25 12 0.43
26 10 0.36
ACGTcount: A:0.02, C:0.14, G:0.18, T:0.67
Consensus pattern (25 bp):
TCTTTTTGGAGGTTCTTCTTTCTTT
Found at i:102608209 original size:21 final size:20
Alignment explanation
Indices: 102608174--102608222 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
102608164 ACATTGCCTG
*
102608174 TTCACACGGTCGTGTCCCTAC
1 TTCACACGGTCGTGTACCT-C
102608195 TTCACACGGGT-GTGTACCTC
1 TTCACAC-GGTCGTGTACCTC
102608215 TATCACAC
1 T-TCACAC
102608223 AACCATGTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 20 0.80
22 3 0.12
ACGTcount: A:0.18, C:0.35, G:0.18, T:0.29
Consensus pattern (20 bp):
TTCACACGGTCGTGTACCTC
Found at i:102609063 original size:92 final size:92
Alignment explanation
Indices: 102608711--102609038 Score: 485
Period size: 92 Copynumber: 3.6 Consensus size: 92
102608701 ACCGATATTA
102608711 GTATAGCAGATTACCACATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
1 GTATAGCAGATTACCACATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
* * *
102608776 AACTGGCAATTTTACTGCAGCCTATCG
66 AACTGACAGTTTTACTGCAACCTATCG
**
102608803 GTATAGCAGATTACCACATTGCACTGTATTGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
1 GTATAGCAGATTACCACATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
*
102608868 AACTGACAGTTTTACTGCAACGTATCG
66 AACTGACAGTTTTACTGCAACCTATCG
* * ** * * * * *
102608895 ATATAGCGGATTACTGCATTGCACTGTATCGCATGTATGTTAGCTAAGCTACGTGCCGTTGACTG
1 GTATAGCAGATTACCACATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
*
102608960 AACTGATAGTTTTACTGCAACCTATCG
66 AACTGACAGTTTTACTGCAACCTATCG
** *
102608987 GTATAGCAGATTACCGTATTGCACTGTACCGCATGTATGTTAGCTACGCTAC
1 GTATAGCAGATTACCACATTGCACTGTACCGCATGTACGTTAGCTACGCTAC
102609039 ATACTACTAT
Statistics
Matches: 213, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 213 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (92 bp):
GTATAGCAGATTACCACATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
AACTGACAGTTTTACTGCAACCTATCG
Found at i:102611325 original size:26 final size:26
Alignment explanation
Indices: 102611267--102611402 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
102611257 CTGGAGGCCT
102611267 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
*
102611291 AGCCCTTTTCAGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
102611317 AGCCCTTTTCAATACACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
102611343 AGCCCTTTTCCATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
102611369 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
102611395 A-CCCTTTT
1 AGCCCTTTT
102611403 GCACTTCCTC
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
23 5 0.05
24 6 0.06
25 17 0.17
26 74 0.73
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:102611477 original size:20 final size:20
Alignment explanation
Indices: 102611452--102611508 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
102611442 TTATGAATTC
*
102611452 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
*
102611471 TATCATGCGCATATCATATCA
1 -ATCATGTGCATATCATATCA
102611492 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
102611509 CCACGTATCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 10 0.30
20 21 0.64
21 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:102621199 original size:40 final size:39
Alignment explanation
Indices: 102621071--102621201 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 39
102621061 TATGCTGGAA
* * *
102621071 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTG
** * * *
102621111 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GGG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTG
*
102621149 ACATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTG
1 --ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-GTG
102621191 ATTATATCCGG
1 ATTATATCCGG
102621202 TTATATTCCG
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
38 2 0.03
40 68 0.94
42 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTG
Found at i:102621200 original size:80 final size:80
Alignment explanation
Indices: 102621034--102621201 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
102621024 AAATTGAATG
* *
102621034 ATATCCGGGCTAAATCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAATCCCGAAGACAATTATGCGGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
102621099 ATTGCGCTAGTGGCT
66 ATTGCGCTAGTGACT
* * * * *
102621114 ACATCCGGGCTAAGA-CCCGAAGGC-ATTCGTGCGGGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAA-ATCCCGAAGACAATT-ATGCGGGAAATTATATCCGGGCTAAGACCCGAAGG
* * *
102621177 CATTTGTGC-ACGTGATT
64 CAATTGCGCTA-GTGACT
102621194 ATATCCGG
1 ATATCCGG
102621202 TTATATTCCG
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
79 4 0.05
80 68 0.93
81 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAATCCCGAAGACAATTATGCGGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGCGCTAGTGACT
Found at i:102629081 original size:40 final size:39
Alignment explanation
Indices: 102629015--102629179 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
102629005 AAATTGAATG
* *
102629015 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
102629054 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
102629094 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
102629132 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
102629172 ATATCCGG
1 ATATCCGG
102629180 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:102629147 original size:38 final size:38
Alignment explanation
Indices: 102629016--102629163 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
102629006 AATTGAATGA
* * * *
102629016 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
102629055 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
102629093 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
102629133 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
102629164 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:102629178 original size:78 final size:78
Alignment explanation
Indices: 102629015--102629179 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
102629005 AAATTGAATG
*
102629015 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
102629080 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
102629094 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
102629157 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
102629172 ATATCCGG
1 ATATCCGG
102629180 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:102634924 original size:39 final size:39
Alignment explanation
Indices: 102634879--102634991 Score: 140
Period size: 39 Copynumber: 2.9 Consensus size: 39
102634869 CGGATATATA
102634879 CTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-
1 CTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAA-GC
* *
102634918 CTCGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCC
1 CTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAAG-C
* * *
102634957 ACTAGCACAATTGCCTTCGGGTCTTAACCCGGATA
1 -CTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA
102634992 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
37 1 0.02
38 2 0.03
39 32 0.50
40 29 0.45
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.24
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAAGC
Found at i:102635009 original size:40 final size:39
Alignment explanation
Indices: 102634868--102635031 Score: 140
Period size: 40 Copynumber: 4.2 Consensus size: 39
102634858 CGGAATATAA
*
102634868 CCGGATAT-ATACTC-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAC-CAGCACAATTGCCTTCGGGTCTTAGC
* *
102634906 CCGGATAGAATGCTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
102634945 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ATACCAGCACAATTGCCTTCGGGTCTTAGC
* * * *
102634985 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAA-TACCAGCACAATTGCCTTCGGGTCTTAGC
102635024 CCGGATAT
1 CCGGATAT
102635032 CATTCAATTT
Statistics
Matches: 102, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 7 0.07
39 47 0.46
40 48 0.47
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:102637238 original size:40 final size:40
Alignment explanation
Indices: 102637193--102637357 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
102637183 CGGAATATAA
102637193 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
102637233 CCGGATAGAA--ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
102637271 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
102637311 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
102637350 CCGGATAT
1 CCGGATAT
102637358 CATTCAATTT
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 33 0.31
39 13 0.12
40 59 0.56
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102644441 original size:28 final size:29
Alignment explanation
Indices: 102644404--102644470 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
102644394 AAGTCTACAT
*
102644404 ACATGCATATGGCCCACTAAGCCC-AATC
1 ACATTCATATGGCCCACTAAGCCCAAATC
* * * *
102644432 TCATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAAGCCCAAATC
102644461 ACATTCATAT
1 ACATTCATAT
102644471 ACATGCTTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 19 0.59
29 13 0.41
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAAGCCCAAATC
Found at i:102644706 original size:16 final size:16
Alignment explanation
Indices: 102644685--102644715 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
102644675 CAAACTTTTG
102644685 GCTTTTCGGCATTTCA
1 GCTTTTCGGCATTTCA
102644701 GCTTTTCGGCATTTC
1 GCTTTTCGGCATTTC
102644716 GAGATTTGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.26, G:0.19, T:0.45
Consensus pattern (16 bp):
GCTTTTCGGCATTTCA
Found at i:102649176 original size:16 final size:16
Alignment explanation
Indices: 102649155--102649185 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102649145 TAAACTTTTA
*
102649155 GCTTTTCGGCATTTCG
1 GCTTTTCGACATTTCG
102649171 GCTTTTCGACATTTC
1 GCTTTTCGACATTTC
102649186 TGGATTTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.26, G:0.19, T:0.45
Consensus pattern (16 bp):
GCTTTTCGACATTTCG
Found at i:102657459 original size:40 final size:39
Alignment explanation
Indices: 102657393--102657538 Score: 129
Period size: 40 Copynumber: 3.8 Consensus size: 39
102657383 AAATTGAATG
* *
102657393 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * ****
102657432 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * *
102657472 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAAATT
*
102657510 CTATCCGGGCTAAGACCCGAAGGC-ATTTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTTG
102657539 TGCACGTGAT
Statistics
Matches: 85, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
37 1 0.01
38 29 0.34
39 15 0.18
40 40 0.47
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAAATT
Found at i:102657833 original size:126 final size:126
Alignment explanation
Indices: 102657607--102657857 Score: 486
Period size: 126 Copynumber: 2.0 Consensus size: 126
102657597 TTGCTGTAAT
102657607 GAATTCAATTAGTACACTCGAAAAGCCCAAAGGATAAGGTACGTTATATGTGCATTGGAAAGTCG
1 GAATTCAATTAGTACACTCGAAAAGCCCAAAGGATAAGGTACGTTATATGTGCATTGGAAAGTCG
102657672 ACATGTTTGAGCAACATTCGCTCAATCGACTAATGAATTTCAGTTATTGAATTGATTGATAA
66 ACATGTTTGAGCAACATTCGCTCAATCGACTAATGAA-TTCAGTTATTGAATTGATTGATAA
102657734 GAATTCAATTAGTACACTCGAAAAGCCCAAA-GATAAGGTACGTTATATGTGCATTGGAAAGTCG
1 GAATTCAATTAGTACACTCGAAAAGCCCAAAGGATAAGGTACGTTATATGTGCATTGGAAAGTCG
102657798 ACATGTTTGAGCAACATTCGCTCAATCGACTAATGAATTCAGTTATTGAATTGATTGATA
66 ACATGTTTGAGCAACATTCGCTCAATCGACTAATGAATTCAGTTATTGAATTGATTGATA
102657858 CTTTGTGAAA
Statistics
Matches: 124, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
125 23 0.19
126 70 0.56
127 31 0.25
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (126 bp):
GAATTCAATTAGTACACTCGAAAAGCCCAAAGGATAAGGTACGTTATATGTGCATTGGAAAGTCG
ACATGTTTGAGCAACATTCGCTCAATCGACTAATGAATTCAGTTATTGAATTGATTGATAA
Found at i:102659226 original size:40 final size:40
Alignment explanation
Indices: 102659204--102659374 Score: 211
Period size: 40 Copynumber: 4.3 Consensus size: 40
102659194 CTAGTGATTC
*
102659204 TATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTA
*
102659244 TATCCGGGCTAAGATCCGAAGGCATTCGTGCGAGTTGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTA
* * ***
102659284 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTA
* * ** *
102659324 AATCCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTA
102659364 TATCC-GGCTAA
1 TATCCGGGCTAA
102659375 ATTTTGAAGA
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 5 0.04
40 104 0.93
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTA
Found at i:102659301 original size:80 final size:80
Alignment explanation
Indices: 102659167--102659374 Score: 213
Period size: 80 Copynumber: 2.6 Consensus size: 80
102659157 TGAATGATAC
* * * * * * * * *
102659167 CCGGGCTATGTCCCAAAGGCATTTATGCTAGTGATTCTATCTGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
102659232 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * *
102659247 CCGGGCTAAGATCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTC
102659311 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* **
102659327 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATATCCGGGCTAA
102659375 ATTTTGAAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
79 8 0.08
80 93 0.89
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:102662604 original size:25 final size:25
Alignment explanation
Indices: 102662571--102662666 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 25
102662561 TATCATATAT
* *
102662571 CTGGAGGCAAAACCCTTTTCGGTAAA
1 CTGG-GGCAAAGCCCTTTTCGATAAA
102662597 CTGGGGCATAAGCCCTTTTCGATAAA
1 CTGGGGCA-AAGCCCTTTTCGATAAA
* * *
102662623 CAGGGGCGTAAGCCCTTTTCAATAAA
1 CTGGGGC-AAAGCCCTTTTCGATAAA
*
102662649 CTGGGGCATAGCCCTTTT
1 CTGGGGCAAAGCCCTTTT
102662667 GCACTTCCTC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
25 13 0.22
26 47 0.78
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
CTGGGGCAAAGCCCTTTTCGATAAA
Found at i:102662741 original size:20 final size:20
Alignment explanation
Indices: 102662716--102662772 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
102662706 TTATGAATTC
*
102662716 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
102662735 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
102662756 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
102662773 CCACGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:102670004 original size:46 final size:45
Alignment explanation
Indices: 102669954--102670127 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
102669944 TGGTGGAGCA
102669954 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
102670000 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
* *
102670046 TCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
102670092 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102670128 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 34 0.32
46 63 0.59
47 1 0.01
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:102673104 original size:15 final size:15
Alignment explanation
Indices: 102673065--102673144 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
102673055 GTATCTTGGG
*
102673065 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
102673080 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
102673095 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
102673110 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
102673125 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
102673139 TTTCTT
1 TTTCTT
102673145 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:102673134 original size:30 final size:30
Alignment explanation
Indices: 102673056--102673143 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
102673046 CATAGTATCG
* * *
102673056 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
102673086 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
102673116 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
102673144 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:102675604 original size:93 final size:93
Alignment explanation
Indices: 102675445--102675616 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
102675435 GGATGGTCGA
* * * * ****
102675445 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTAACCTATGGATGCGAACACCCGAACTCGTTGAGT
102675510 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
102675538 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTAACCTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTAACCTATGGATGCGAACACCCGAACTCGTTGAGT
*
102675603 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
102675617 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTAACCTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:102675623 original size:46 final size:46
Alignment explanation
Indices: 102675446--102675623 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
102675436 GATGGTCGAG
*
102675446 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * * * * * *
102675492 TGTTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
* * *
102675539 CATCCGAACTCGTTGAGTTGAGTCCAAGTTAACCTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
102675585 CACCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102675624 GCGGGTTACA
Statistics
Matches: 98, Mismatches: 29, Indels: 10
0.72 0.21 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.66
47 32 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:102677653 original size:30 final size:30
Alignment explanation
Indices: 102677618--102677675 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
102677608 TAGGCACTTC
102677618 CACACGGGT-GATCCACACGCCCATGTGTGA
1 CACACGGGTAGA-CCACACGCCCATGTGTGA
*
102677648 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCATGTGT
102677676 CATGGCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCATGTGTGA
Found at i:102687925 original size:46 final size:46
Alignment explanation
Indices: 102687803--102687926 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
102687793 GAGTTCCGAA
** * *
102687803 CTCGTTGAGTTGAGTCCGAGTTCGGGATATGTAACTAGGCATCCTAG
1 CTCGTTGAGTTGAGTCCGAGTTC-GCTTATGGAACTAGACATCCTAG
*
102687850 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACTA-ACA-CCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGA-ACTAGACATCCT-AG
* *
102687896 CTCGTTGAGTTTAGTCCGAGTTCGTTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
102687927 GCGGGTTACA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
45 3 0.04
46 37 0.55
47 27 0.40
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.33
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGAACTAGACATCCTAG
Found at i:102708534 original size:40 final size:40
Alignment explanation
Indices: 102708426--102708635 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
102708416 CGGGATTTAA
* * * * *
102708426 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
102708466 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102708506 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102708546 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102708586 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102708626 CCGGATATAT
1 CCGGATATAT
102708636 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:102716676 original size:40 final size:40
Alignment explanation
Indices: 102716568--102716777 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
102716558 CGGGATTTAA
* * * * *
102716568 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
102716608 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102716648 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102716688 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102716728 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102716768 CCGGATATAT
1 CCGGATATAT
102716778 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:102724277 original size:80 final size:80
Alignment explanation
Indices: 102724184--102724331 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
102724174 GAAATTATAA
* * *
102724184 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-AACCGGGTTAAGACCCGAAGGCAA
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CATACTAACCGGGCTAAGACCCGAAGGCAA
102724246 TTGTGCTAGTGGCTACAT
63 TTGTGCTAGTGGCTACAT
* * *
102724264 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATACTAACCGGGCTAAGACCCGAAGGCAATTG
102724329 TGC
66 TGC
102724332 AAATCGTGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 1 0.02
79 5 0.08
80 53 0.90
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATACTAACCGGGCTAAGACCCGAAGGCAATTG
TGCTAGTGGCTACAT
Found at i:102724306 original size:40 final size:38
Alignment explanation
Indices: 102724184--102724331 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 38
102724174 GAAATTATAA
* * *
102724184 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GCTACAT
* *
102724224 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GCTACAT
*
102724264 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTCTAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGC-TAC-AT
102724304 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGC
102724332 AAATCGTGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 92 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (38 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCGAGTGCTACAT
Found at i:102724345 original size:40 final size:39
Alignment explanation
Indices: 102724140--102724363 Score: 155
Period size: 40 Copynumber: 5.6 Consensus size: 39
102724130 AAATTGAATG
* * * *
102724140 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTCGT
* * * * *
102724180 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-T
* * * * * *
102724220 ACAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-T
* * * *
102724260 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-GT
* *
102724300 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT
* * *
102724339 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
102724364 CTTGGTGCGG
Statistics
Matches: 153, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
37 4 0.03
38 2 0.01
39 3 0.02
40 144 0.94
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT
Found at i:102724346 original size:80 final size:80
Alignment explanation
Indices: 102724224--102724372 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
102724214 GTGGCTACAA
* * * *
102724224 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
102724289 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
102724304 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
102724368 GTGCG
65 GTGCG
102724373 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:102732349 original size:28 final size:28
Alignment explanation
Indices: 102732309--102732370 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
102732299 TTATGCTGGA
*
102732309 AATTATAACCGGGTTAAGACCCGAAGGC
1 AATTGTAACCGGGTTAAGACCCGAAGGC
102732337 AATTGTAACCGGGTTAAGACCCGAAGGC
1 AATTGTAACCGGGTTAAGACCCGAAGGC
102732365 AATTGT
1 AATTGT
102732371 GCTAGTGGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (28 bp):
AATTGTAACCGGGTTAAGACCCGAAGGC
Found at i:102732466 original size:40 final size:39
Alignment explanation
Indices: 102732345--102732484 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 39
102732335 GCAATTGTAA
* * * * *
102732345 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-TATAT
* * * *
102732385 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-GTATAT
*
102732425 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT-ATAT
* * *
102732465 CCGGGTTAAGTCCCGTAGGC
1 CCGGGCTAAGACCCGAAGGC
102732485 CTTGGTGCGG
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTATAT
Found at i:102732493 original size:80 final size:80
Alignment explanation
Indices: 102732345--102732493 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
102732335 GCAATTGTAA
* * * *
102732345 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
102732410 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
102732425 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
102732489 GTGCG
65 GTGCG
102732494 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:102738146 original size:53 final size:54
Alignment explanation
Indices: 102737966--102738177 Score: 187
Period size: 53 Copynumber: 3.9 Consensus size: 54
102737956 ATTAGAGTTT
* * * * *
102737966 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTATGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * * * * * *
102738020 AAGGAAATCATGTAAGACAATGTCAAGACATGACATTGATAAACTACTATATGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * *
102738075 AAAGAT-CTCGTGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
102738128 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TATAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAA
102738178 AGGAAAGGTA
Statistics
Matches: 119, Mismatches: 35, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
53 46 0.39
54 36 0.30
55 37 0.31
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:102748578 original size:35 final size:35
Alignment explanation
Indices: 102748539--102748611 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
102748529 ACACATTCTT
102748539 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
102748574 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
102748609 TAT
1 TAT
102748612 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:102758029 original size:30 final size:30
Alignment explanation
Indices: 102757993--102758054 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
102757983 AATCGGAAGT
*
102757993 TTTGGCACTAAGTGTGCGATTTAAATTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
102758023 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
102758053 TT
1 TT
102758055 CGGCTATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:102769863 original size:24 final size:24
Alignment explanation
Indices: 102769836--102769886 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
102769826 ATATTCTCAA
102769836 ATATTTAAATTTCTGTATAATGAG
1 ATATTTAAATTTCTGTATAATGAG
102769860 ATATTTAAATTTCTGTATAATGAG
1 ATATTTAAATTTCTGTATAATGAG
102769884 ATA
1 ATA
102769887 ATCGATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.04, G:0.12, T:0.45
Consensus pattern (24 bp):
ATATTTAAATTTCTGTATAATGAG
Found at i:102771205 original size:44 final size:42
Alignment explanation
Indices: 102771084--102771209 Score: 121
Period size: 44 Copynumber: 2.9 Consensus size: 42
102771074 CCTTATATGT
* *
102771084 AATCAAATGTCGATGCC-ACTGTCCCAGACAGGGTCTTACACGA
1 AATCAAATAT-GATGCCAAC-GTCCCAGACATGGTCTTACACGA
* * * *
102771127 AATCAAATATGATGCCAGCGTACTAGACGTGGTCTTACACGTA
1 AATCAAATATGATGCCAACGTCCCAGACATGGTCTTACACG-A
* *
102771170 AATCATAAGT-TGATGTCAACGTCCCAGACCTGGTCTTACA
1 AATCA-AA-TATGATGCCAACGTCCCAGACATGGTCTTACA
102771210 TGATAACACA
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 24 0.35
43 16 0.24
44 27 0.40
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
AATCAAATATGATGCCAACGTCCCAGACATGGTCTTACACGA
Found at i:102774110 original size:43 final size:44
Alignment explanation
Indices: 102774055--102774172 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 44
102774045 ATATCGTACA
* * *
102774055 ATGCCAACGTCCCAGACGTGGTCTTACATGCT-ATCTC-ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAACCACAATATCG
* *
102774098 ATGCC-ACTGTCCCAGACATAGTCTTACACGTAACCACATATATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAACCACA-ATATCG
*
102774143 ATGCCAACGTCCCAAACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
102774173 AAAACACATA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
42 3 0.05
43 27 0.44
45 30 0.48
46 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAACCACAATATCG
Found at i:102774156 original size:45 final size:45
Alignment explanation
Indices: 102774092--102774184 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
102774082 ATGCTATCTC
* * *
102774092 ATATCGATGCCACTGTCCCAGACATAGTCTTACACGTAACCACAT
1 ATATCGATGCCACTGTCCCAAACATAGTCTTACACGAAAACACAT
* *
102774137 ATATCGATGCCAAC-GTCCCAAACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCC-ACTGTCCCAAACATAGTCTTACACGAAAACACAT
102774182 ATA
1 ATA
102774185 GGAAATCCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
45 40 0.95
46 2 0.05
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCACTGTCCCAAACATAGTCTTACACGAAAACACAT
Found at i:102775329 original size:14 final size:16
Alignment explanation
Indices: 102775303--102775335 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
102775293 TAAATCACGA
102775303 AAATTTCACACAT-AT
1 AAATTTCACACATAAT
102775318 AAATTT-ACACATAAT
1 AAATTTCACACATAAT
102775333 AAA
1 AAA
102775336 CACATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (16 bp):
AAATTTCACACATAAT
Found at i:102782346 original size:45 final size:44
Alignment explanation
Indices: 102782165--102782349 Score: 123
Period size: 45 Copynumber: 4.2 Consensus size: 44
102782155 TCGGATAATC
* * **
102782165 ACACATATCATACAATGCCAACATCCCAGACGTGGTCTTACATGCT
1 ACACATAT-AT-CAATGCCAACGTCCCAGACGTGGTCTTACACGAA
* * * *
102782211 A-TC-TCATATCGATGCC-ACTGTGCCATACAG-GGTCTTACACGAA
1 ACACAT-ATATCAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAA
* * * * *
102782254 TCA-A-ATA-CAATGCCGATGTCCTAGACATGGTCTTACACGTAA
1 ACACATATATCAATGCCAACGTCCCAGACGTGGTCTTACACG-AA
* *
102782296 CCACATATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAGA
1 ACACATATATCAATGCCAACGTCCCAGACGTGGTCTTACACGA-A
102782341 ACACATATA
1 ACACATATA
102782350 GGAAATCCTA
Statistics
Matches: 104, Mismatches: 23, Indels: 25
0.68 0.15 0.16
Matches are distributed among these distances:
41 23 0.22
42 10 0.10
43 23 0.22
44 8 0.08
45 39 0.38
46 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (44 bp):
ACACATATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAA
Found at i:102784541 original size:27 final size:27
Alignment explanation
Indices: 102784458--102784651 Score: 252
Period size: 27 Copynumber: 7.3 Consensus size: 27
102784448 CTTATGAGAC
*
102784458 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATATGGT
* *
102784485 -AAATGACTATTTTACCTTTATATGGT
1 AAAATGACTATTTTGCCCTTATATGGT
* *
102784511 -AAATGACTATTTTACCCTTATATGAT
1 AAAATGACTATTTTGCCCTTATATGGT
102784537 AAAATGACTATTTTGCCCTTATGA-GGT
1 AAAATGACTATTTTGCCCTTAT-ATGGT
* *
102784564 AAAATGATTATTTTGCCCTTATAGGGT
1 AAAATGACTATTTTGCCCTTATATGGT
*
102784591 AAAATGACTATTTTGTCCTTATGA-GGT
1 AAAATGACTATTTTGCCCTTAT-ATGGT
*
102784618 AAAATGACTATTTTGCCCTTTTATGGT
1 AAAATGACTATTTTGCCCTTATATGGT
*
102784645 AAGATGA
1 AAAATGA
102784652 TTGTTTTACC
Statistics
Matches: 149, Mismatches: 13, Indels: 10
0.87 0.08 0.06
Matches are distributed among these distances:
26 49 0.33
27 98 0.66
28 2 0.01
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATATGGT
Found at i:102785025 original size:18 final size:17
Alignment explanation
Indices: 102784998--102785031 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
102784988 TAGTTATTAC
102784998 ACTGTTACTATTACTGA
1 ACTGTTACTATTACTGA
102785015 ACTGTTTACTATTACTG
1 ACTG-TTACTATTACTG
102785032 CAATGGGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (17 bp):
ACTGTTACTATTACTGA
Found at i:102786137 original size:15 final size:15
Alignment explanation
Indices: 102786114--102786144 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
102786104 TCAAAAATTC
102786114 CAATACAAAACATAT
1 CAATACAAAACATAT
*
102786129 CAATCCAAAACATAT
1 CAATACAAAACATAT
102786144 C
1 C
102786145 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:102798419 original size:24 final size:23
Alignment explanation
Indices: 102798396--102798476 Score: 80
Period size: 24 Copynumber: 3.6 Consensus size: 23
102798386 CAATAAAAGA
*
102798396 AGAATAAGAAGAGAGGAAGAAAG
1 AGAATAAGAAGAGAGGAAGAAGG
* *
102798419 AGAAGAAGAATA-A-GAAGAAGG
1 AGAATAAGAAGAGAGGAAGAAGG
102798440 AGAAT-A-AAGAGAATGAGAAGAAGG
1 AGAATAAGAAGAG-A-G-GAAGAAGG
102798464 AGAATAAGAAGAG
1 AGAATAAGAAGAG
102798477 GATGGGAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
19 3 0.07
20 1 0.02
21 12 0.26
22 1 0.02
23 10 0.22
24 13 0.28
25 1 0.02
26 5 0.11
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.06
Consensus pattern (23 bp):
AGAATAAGAAGAGAGGAAGAAGG
Found at i:102798428 original size:6 final size:6
Alignment explanation
Indices: 102798392--102798475 Score: 50
Period size: 6 Copynumber: 14.2 Consensus size: 6
102798382 TTGACAATAA
* * *
102798392 AAGAAG AATAAG AAG-AG AGGAAG AA-AGAG AAGAAG AATAAG AAGAAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGA-AG AAGAAG AAGAAG AAGAAG
* * * *
102798439 GAGAAT AA-AGAG AATG-AG AAGAAG GAGAAT AAGAAG A
1 AAGAAG AAGA-AG AA-GAAG AAGAAG AAGAAG AAGAAG A
102798476 GGATGGGAAG
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
5 7 0.12
6 49 0.86
7 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.32, T:0.06
Consensus pattern (6 bp):
AAGAAG
Found at i:102798452 original size:15 final size:15
Alignment explanation
Indices: 102798415--102798458 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
102798405 AGAGAGGAAG
*
102798415 AAAGAGAAGAAGAAT
1 AAAGAGAAGGAGAAT
102798430 -AAGAAGAAGGAGAAT
1 AAAG-AGAAGGAGAAT
*
102798445 AAAGAGAATGAGAA
1 AAAGAGAAGGAGAA
102798459 GAAGGAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 3 0.12
15 19 0.76
16 3 0.12
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.07
Consensus pattern (15 bp):
AAAGAGAAGGAGAAT
Found at i:102798466 original size:15 final size:15
Alignment explanation
Indices: 102798411--102798475 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
102798401 AAGAAGAGAG
102798411 GAAGAAAGAGAA-GAA
1 GAAGAAAGAGAATG-A
* *
102798426 GAA-TAAGAAGAAGGA
1 GAAGAAAG-AGAATGA
*
102798441 GAATAAAGAGAATGA
1 GAAGAAAGAGAATGA
* *
102798456 GAAGAAGGAGAATAA
1 GAAGAAAGAGAATGA
102798471 GAAGA
1 GAAGA
102798476 GGATGGGAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
14 3 0.07
15 34 0.83
16 4 0.10
ACGTcount: A:0.62, C:0.00, G:0.32, T:0.06
Consensus pattern (15 bp):
GAAGAAAGAGAATGA
Found at i:102804403 original size:49 final size:49
Alignment explanation
Indices: 102804274--102804581 Score: 507
Period size: 49 Copynumber: 6.4 Consensus size: 49
102804264 CCCTTCGGGA
* *
102804274 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102804321 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102804368 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102804417 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102804466 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102804515 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102804564 CTTATCACATATATATAC
1 CTTATCACATATATATAC
102804582 CTCATACAAA
Statistics
Matches: 241, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 47 0.20
49 193 0.80
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102808002 original size:40 final size:40
Alignment explanation
Indices: 102807958--102808265 Score: 573
Period size: 40 Copynumber: 7.7 Consensus size: 40
102807948 CCAGCATGAT
* *
102807958 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
102807998 TGCTCTTCGGGACTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
102808038 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
102808078 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
102808118 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
102808158 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
102808198 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
102808238 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
102808266 GTCGAGACTT
Statistics
Matches: 263, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
39 4 0.02
40 259 0.98
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:102810691 original size:49 final size:49
Alignment explanation
Indices: 102810562--102810858 Score: 417
Period size: 49 Copynumber: 6.4 Consensus size: 49
102810552 CCCTTCGGGA
* *
102810562 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102810609 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102810656 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102810705 CTTAT--C--------ACACTTTCACAATCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102810744 CTTATCACATATATACACACTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102810792 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102810841 CTTATCACATATATATAC
1 CTTATCACATATATATAC
102810859 CTCATACAAA
Statistics
Matches: 224, Mismatches: 11, Indels: 28
0.85 0.04 0.11
Matches are distributed among these distances:
39 36 0.16
41 1 0.00
46 1 0.00
47 48 0.21
48 47 0.21
49 91 0.41
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102810716 original size:39 final size:39
Alignment explanation
Indices: 102810672--102810752 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
102810662 ACATTTATAT
* *
102810672 ACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATC
1 ACACTTTCACAATCATCACATCGGCCATTAGGCCTTATC
102810711 ACACTTTCACAATCATCACATCGGCCATTAGGCCTTATC
1 ACACTTTCACAATCATCACATCGGCCATTAGGCCTTATC
102810750 ACA
1 ACA
102810753 TATATACACA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.33, G:0.10, T:0.30
Consensus pattern (39 bp):
ACACTTTCACAATCATCACATCGGCCATTAGGCCTTATC
Found at i:102810728 original size:88 final size:89
Alignment explanation
Indices: 102810562--102810858 Score: 350
Period size: 88 Copynumber: 3.2 Consensus size: 89
102810552 CCCTTCGGGA
* * *
102810562 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACA-TCATCACATCGGCCATTAGG-CCT-T---ATACA-AC
*
102810625 ACCTTCACATTCATCACATCGGCCATTAGGC
59 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
102810656 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGCCTTAT-C-ACACTTTC
1 CTTATCACATATATATACACTTTCACA-TCATCACATCGGCCATTAGGCCTTATACAACACTTTC
*
102810719 ACAATCATCACATCGGCCATTAGGC
65 ACATTCATCACATCGGCCATTAGGC
*
102810744 CTTATCACATATATACACACTTTCACATCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATATACACTTTCACATCATCACATCGGCCATTAGGCCTTAT-AC------A-A
102810809 CACTTTCACATTCATCACATCGGCCATTAGGC
58 CACTTTCACATTCATCACATCGGCCATTAGGC
102810841 CTTATCACATATATATAC
1 CTTATCACATATATATAC
102810859 CTCATACAAA
Statistics
Matches: 180, Mismatches: 11, Indels: 21
0.85 0.05 0.10
Matches are distributed among these distances:
87 25 0.14
88 56 0.31
89 1 0.01
91 2 0.01
94 11 0.06
95 4 0.02
96 32 0.18
97 49 0.27
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (89 bp):
CTTATCACATATATATACACTTTCACATCATCACATCGGCCATTAGGCCTTATACAACACTTTCA
CATTCATCACATCGGCCATTAGGC
Found at i:102810775 original size:48 final size:48
Alignment explanation
Indices: 102810710--102810855 Score: 265
Period size: 48 Copynumber: 3.0 Consensus size: 48
102810700 TAGGCCTTAT
102810710 CACACTTTCACAATCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACACTTTCAC-ATCATCACATCGGCCATTAGGCCTTATCACATATATA
102810759 CACACTTTCACATCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACACTTTCACATCATCACATCGGCCATTAGGCCTTATCACATATATA
*
102810807 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACACTTTCACA-TCATCACATCGGCCATTAGGCCTTATCACATATATA
102810856 TACCTCATAC
Statistics
Matches: 95, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
48 48 0.51
49 47 0.49
ACGTcount: A:0.32, C:0.30, G:0.08, T:0.30
Consensus pattern (48 bp):
CACACTTTCACATCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:102810819 original size:136 final size:135
Alignment explanation
Indices: 102810572--102810849 Score: 470
Period size: 136 Copynumber: 2.1 Consensus size: 135
102810562 CTTATCACAT
* * *
102810572 TTAT-ACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATACACCTTCACATT
1 TTATCACACTTTCACAATCATCACATCGGCCATTAGGCCCTATCACATATATACACCTTCACATT
* *
102810636 CATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATT
66 CATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
102810701 AGGCC
131 AGGCC
*
102810706 TTATCACACTTTCACAATCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACA
1 TTATCACACTTTCACAATCATCACATCGGCCATTAGGCCCTATCACATATATACAC-C-TTCACA
102810771 -TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCA
64 TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCA
102810835 TTAGGCC
129 TTAGGCC
102810842 TTATCACA
1 TTATCACA
102810850 TATATATACC
Statistics
Matches: 135, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
134 4 0.03
135 47 0.35
136 78 0.58
137 6 0.04
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (135 bp):
TTATCACACTTTCACAATCATCACATCGGCCATTAGGCCCTATCACATATATACACCTTCACATT
CATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
AGGCC
Found at i:102820415 original size:40 final size:40
Alignment explanation
Indices: 102820378--102820563 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
102820368 GCTACTCGTT
* *
102820378 CAAATGTCTTCGGGA-TATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACT-TAACCCGGATT-TAGTAACTCGCA
102820418 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
102820458 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*** * * *
102820498 CAAATGCCTTC-GGATCTTAGTTCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
102820539 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
102820564 CATCATTCGA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 3 0.02
40 114 0.87
41 14 0.11
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:102825726 original size:47 final size:47
Alignment explanation
Indices: 102825657--102825782 Score: 189
Period size: 47 Copynumber: 2.7 Consensus size: 47
102825647 GTGCGAATAG
* *
102825657 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTCAAAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
* * ** *
102825704 TACCTTAATTTGGCTACGGGCCATGGTATAGGTACTCCGAGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
102825751 TACCTTGATTTGGCTACAGGCCATGGTATAGG
1 TACCTTGATTTGGCTACAGGCCATGGTATAGG
102825783 CACTTATTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
Found at i:102837275 original size:57 final size:58
Alignment explanation
Indices: 102837140--102837288 Score: 169
Period size: 57 Copynumber: 2.6 Consensus size: 58
102837130 ATTTAACTCA
* * * *
102837140 TTATAGAAAGAATTTAGCCTAGACTGGTAATCCTAATATAATACCTCTCGAGTATACG
1 TTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATACG
* * * * * *
102837198 TTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGA-GCTCTTTTGAGCATACG
1 TTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATAC-CTCTCGAGCATACG
102837255 TTATATAAAGGATTTAGCCTGGACTGGTAATCCT
1 TTATATAAAGGATTTAGCCTGGACTGGTAATCCT
102837289 GTTATACTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
56 3 0.04
57 42 0.55
58 30 0.39
59 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (58 bp):
TTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATACG
Done.