Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 328 of 438
Found at i:102839750 original size:45 final size:44
Alignment explanation
Indices: 102839657--102839804 Score: 156
Period size: 45 Copynumber: 3.4 Consensus size: 44
102839647 ATTCGGGAAA
* * * * *
102839657 CTCGCACACTTAGTGCCAAATA-A-ATAGCAGAAGCTGTATCAAT
1 CTCGCACACTAAGTG-CAAATATATATAGCTGAAGCTATCTCGAT
*
102839700 CTCGCACACTAAGTGCATATATATATAAGCTGAAGCTATCTCGAT
1 CTCGCACACTAAGTGCAAATATATAT-AGCTGAAGCTATCTCGAT
* ** *
102839745 CTCGCACACTAAATGCAAATATATATATTTGAAGCTATCTTGAT
1 CTCGCACACTAAGTGCAAATATATATAGCTGAAGCTATCTCGAT
* *
102839789 TTCGTACACTAAGTGC
1 CTCGCACACTAAGTGC
102839805 CCAAAATTAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 5 0.06
43 15 0.17
44 30 0.34
45 38 0.43
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (44 bp):
CTCGCACACTAAGTGCAAATATATATAGCTGAAGCTATCTCGAT
Found at i:102842862 original size:40 final size:39
Alignment explanation
Indices: 102842694--102842864 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
102842684 AGAAATTGAA
* *
102842694 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
102842734 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
102842774 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
102842814 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
102842854 TGATATCCGGG
1 TGATATCCGGG
102842865 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:102847563 original size:2 final size:2
Alignment explanation
Indices: 102847556--102847585 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
102847546 TTACACATAC
102847556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102847586 TGTATTGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102849028 original size:40 final size:39
Alignment explanation
Indices: 102848983--102849170 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 39
102848973 ATAACCACAA
* * *** *
102848983 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
102849023 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
102849063 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
102849103 GCATAAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTA
1 GCA-CAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
102849143 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
102849171 GTATCATTCA
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
40 132 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:102849090 original size:80 final size:80
Alignment explanation
Indices: 102848954--102849170 Score: 249
Period size: 80 Copynumber: 2.7 Consensus size: 80
102848944 AGCCTAGTCT
* * * * * * * * **
102848954 CTTCGGAATTTAG-CCGAATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
*
102849018 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* * *
102849033 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
* *
102849097 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
* *
102849113 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
102849171 GTATCATTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 11 0.10
80 103 0.90
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
AACTAGCACAAATGC
Found at i:102851887 original size:40 final size:40
Alignment explanation
Indices: 102851821--102851987 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
102851811 AAATTGAATG
* * *
102851821 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
102851860 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
102851900 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
102851940 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
102851980 ATATCCGG
1 ATATCCGG
102851988 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:102861966 original size:27 final size:27
Alignment explanation
Indices: 102861935--102862003 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
102861925 AGCGTAGATC
102861935 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
102861962 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
*
102861989 ACCGATA-TACCCCTA
1 A-CGAAATTACCCCTA
102862004 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 36 0.90
28 4 0.10
ACGTcount: A:0.45, C:0.26, G:0.10, T:0.19
Consensus pattern (27 bp):
ACGAAATTACCCCTAAAGAGCAAAATT
Found at i:102869980 original size:40 final size:40
Alignment explanation
Indices: 102869931--102870138 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
102869921 TCTTCGGAAT
* * *
102869931 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
102869970 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
102870010 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * * *
102870050 TTAGCCCGGACATAATCACTAGCATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
102870090 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
102870130 TTAGCCCGG
1 TTAGCCCGG
102870139 GTATCATTCA
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 138 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:102876017 original size:49 final size:49
Alignment explanation
Indices: 102875961--102876059 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
102875951 AAAATCAATA
102875961 ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
1 ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
*
102876010 ACCTAATCACACATAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
1 ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
102876059 A
1 A
102876060 TAAATACTAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.31
Consensus pattern (49 bp):
ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
Found at i:102876473 original size:23 final size:24
Alignment explanation
Indices: 102876438--102876522 Score: 66
Period size: 26 Copynumber: 3.4 Consensus size: 24
102876428 GGGATCTCAG
* *
102876438 GAGAGCCATATATCGGGAAGTTCA-A
1 GAGAGCC--ATATCAGGAAGCTCACA
102876463 GAGAGCCATATCAGGAAGCTCACA
1 GAGAGCCATATCAGGAAGCTCACA
* * *
102876487 AAGAGCCAATTAACAGGAAACTCAC-
1 GAGAGCC-A-TATCAGGAAGCTCACA
102876512 GAAGAGCCATA
1 G-AGAGCCATA
102876523 ATCAAAAAGC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
23 13 0.26
24 9 0.18
25 9 0.18
26 19 0.38
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.14
Consensus pattern (24 bp):
GAGAGCCATATCAGGAAGCTCACA
Found at i:102878481 original size:41 final size:41
Alignment explanation
Indices: 102878436--102878553 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
102878426 TGAAAGATAA
102878436 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
102878477 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
102878507 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
102878548 ATGTAG
1 ATGTAG
102878554 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:102878493 original size:71 final size:71
Alignment explanation
Indices: 102878404--102878567 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
102878394 GAGATGTATC
*
102878404 CCATGTAGGCAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
102878469 AGGACA
66 AGGACA
102878475 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
102878540 AGGACA
66 AGGACA
102878546 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
102878568 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:102882942 original size:47 final size:47
Alignment explanation
Indices: 102882882--102883011 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
102882872 ATGCAAATAA
* * *** *
102882882 TACCTTGATTTGGCTATGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCAAGAGAAGT
* *
102882929 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCAAGAGAAGT
* *
102882976 TACCTTGATTTAGCTATGGGCCATGGTATAAGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
102883012 TATCGATTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCAAGAGAAGT
Found at i:102883266 original size:40 final size:40
Alignment explanation
Indices: 102883211--102883289 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
102883201 ATATAATGTT
102883211 GATTTGGTAATGTGAAAATGGTTGAATTATATTGTTTGAA
1 GATTTGGTAATGTGAAAATGGTTGAATTATATTGTTTGAA
102883251 GATTTGGTAATGTGAAAATGGTTGAATTATATTGTTTGA
1 GATTTGGTAATGTGAAAATGGTTGAATTATATTGTTTGA
102883290 CGAATTGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (40 bp):
GATTTGGTAATGTGAAAATGGTTGAATTATATTGTTTGAA
Found at i:102884082 original size:79 final size:79
Alignment explanation
Indices: 102883948--102884108 Score: 232
Period size: 79 Copynumber: 2.0 Consensus size: 79
102883938 GTGCGAAACA
* * * *
102883948 TGGTCATGTTACACGGCCGTGTGTCCCATGGGGTAGCCCTATGAATTAAGACAATATACCCTACA
1 TGGTCATGTTACAAGGCCGTATCTCCCATGGGGTAGCCCTACGAATTAAGACAATATACCCTACA
*
102884013 GGTTTGACATGGCC
66 GGTTTGACACGGCC
** * *
102884027 TGGTCATGTTACAAGGTTGTATCTCCCTTGGGGTAGCCCTACGAATTAAGTCAATATACCCTACA
1 TGGTCATGTTACAAGGCCGTATCTCCCATGGGGTAGCCCTACGAATTAAGACAATATACCCTACA
*
102884092 GGTTTGGCACGGCC
66 GGTTTGACACGGCC
102884106 TGG
1 TGG
102884109 ACATACAGGC
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 72 1.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (79 bp):
TGGTCATGTTACAAGGCCGTATCTCCCATGGGGTAGCCCTACGAATTAAGACAATATACCCTACA
GGTTTGACACGGCC
Found at i:102884618 original size:56 final size:56
Alignment explanation
Indices: 102884532--102884643 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
102884522 GTGTTTGTGA
*
102884532 ATGAATGATATGCGATATTGAACGTTTGATAAATGTTATATTGTTCGGTAATGCCT
1 ATGAATGATATGCGATATTAAACGTTTGATAAATGTTATATTGTTCGGTAATGCCT
102884588 ATGAATGATATGCGATATTAAACGTTTGATAAATGTTATATTGTTCGGTAATGCCT
1 ATGAATGATATGCGATATTAAACGTTTGATAAATGTTATATTGTTCGGTAATGCCT
102884644 CGTAACCCTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (56 bp):
ATGAATGATATGCGATATTAAACGTTTGATAAATGTTATATTGTTCGGTAATGCCT
Found at i:102886862 original size:15 final size:15
Alignment explanation
Indices: 102886842--102886870 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
102886832 GCTGGTTTTC
102886842 GGCACTAAGTGTGCA
1 GGCACTAAGTGTGCA
102886857 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
102886871 GGGCTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.21, G:0.34, T:0.21
Consensus pattern (15 bp):
GGCACTAAGTGTGCA
Found at i:102886894 original size:29 final size:29
Alignment explanation
Indices: 102886852--102886929 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
102886842 GGCACTAAGT
*
102886852 GTGCA-GGCACTAAGTGTGCGGGCTTGAAA
1 GTGCATGGCACTAAGTGTGCGAG-TTGAAA
*
102886881 -TGCATGGCACTAAGTGTGCGAGTTTAAA
1 GTGCATGGCACTAAGTGTGCGAGTTGAAA
*
102886909 GTACATGGCACTAAGTGTGCG
1 GTGCATGGCACTAAGTGTGCG
102886930 TGGTTGATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 9 0.20
29 35 0.80
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.24
Consensus pattern (29 bp):
GTGCATGGCACTAAGTGTGCGAGTTGAAA
Found at i:102892185 original size:22 final size:22
Alignment explanation
Indices: 102892160--102892201 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
102892150 AATTATTAAC
102892160 ATAATGAATTTTAATTAATTCT
1 ATAATGAATTTTAATTAATTCT
* *
102892182 ATAATTAATTTTGATTAATT
1 ATAATGAATTTTAATTAATT
102892202 TTGGTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTCT
Found at i:102892204 original size:10 final size:10
Alignment explanation
Indices: 102892161--102892203 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
102892151 ATTATTAACA
*
102892161 TAATGAATTT
1 TAATTAATTT
102892171 TAATTAATTCT
1 TAATTAATT-T
102892182 ATAATTAATTT
1 -TAATTAATTT
*
102892193 TGATTAATTT
1 TAATTAATTT
102892203 T
1 T
102892204 GGTTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 18 0.62
11 2 0.07
12 9 0.31
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (10 bp):
TAATTAATTT
Found at i:102892366 original size:22 final size:22
Alignment explanation
Indices: 102892340--102892384 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
102892330 ATTATATGTA
*
102892340 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATACAATTTAATT
*
102892362 TTAATTTATATACAATTTAATT
1 TTAATTCATATACAATTTAATT
102892384 T
1 T
102892385 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATTCATATACAATTTAATT
Found at i:102892424 original size:20 final size:20
Alignment explanation
Indices: 102892399--102892439 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
102892389 TAAATAAATT
102892399 ATTATTAATTAATTATGAAA
1 ATTATTAATTAATTATGAAA
102892419 ATTATTAATTAATTATGAAA
1 ATTATTAATTAATTATGAAA
102892439 A
1 A
102892440 GTGGCCCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
ATTATTAATTAATTATGAAA
Found at i:102892432 original size:11 final size:11
Alignment explanation
Indices: 102892395--102892434 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
102892385 GGGTTAAATA
102892395 AATT-ATTATT
1 AATTAATTATT
*
102892405 AATTAATTATG
1 AATTAATTATT
102892416 AA--AATTATT
1 AATTAATTATT
102892425 AATTAATTAT
1 AATTAATTAT
102892435 GAAAAGTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
9 8 0.32
10 4 0.16
11 13 0.52
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
AATTAATTATT
Found at i:102900936 original size:106 final size:106
Alignment explanation
Indices: 102900751--102900962 Score: 406
Period size: 106 Copynumber: 2.0 Consensus size: 106
102900741 TGTGGTCCCA
*
102900751 AACCACTATTCGACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
1 AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
102900816 CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
66 CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
102900857 AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
1 AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
*
102900922 CCTTAAGGTCTGAGGTTTGAGTGTGGCACAACACAAACGAG
66 CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
102900963 GTATTTATTT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (106 bp):
AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
Found at i:102902761 original size:54 final size:54
Alignment explanation
Indices: 102902702--102902810 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
102902692 TTAAGACCTT
* **
102902702 TGATTTATGAAATTACTGAAATACCCCCAGG-TTGTAAGCTTACCGAAATACCCC
1 TGATTTATGAAATTACTGAAATACCCCC-GGTTTGCAAAATTACCGAAATACCCC
* * *
102902756 TGATTTGTGAAATTACTGAAATAGCCCCGGTTTGCAAAATTATCGAAATACCCC
1 TGATTTATGAAATTACTGAAATACCCCCGGTTTGCAAAATTACCGAAATACCCC
102902810 T
1 T
102902811 ATAGGGTAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
53 2 0.04
54 46 0.96
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (54 bp):
TGATTTATGAAATTACTGAAATACCCCCGGTTTGCAAAATTACCGAAATACCCC
Found at i:102902771 original size:27 final size:27
Alignment explanation
Indices: 102902702--102902810 Score: 80
Period size: 27 Copynumber: 4.0 Consensus size: 27
102902692 TTAAGACCTT
* *
102902702 TGATTTATGAAATTACTGAAATACCCC
1 TGATTTGTGAAATTACCGAAATACCCC
* * *
102902729 -CAGGTTGT-AAGCTTACCGAAATACCCC
1 TGA-TTTGTGAA-ATTACCGAAATACCCC
*
102902756 TGATTTGTGAAATTACTGAAATAGCCCC
1 TGATTTGTGAAATTACCGAAATA-CCCC
* ** *
102902784 -GGTTTGCAAAATTATCGAAATACCCC
1 TGATTTGTGAAATTACCGAAATACCCC
102902810 T
1 T
102902811 ATAGGGTAGG
Statistics
Matches: 62, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
26 7 0.11
27 48 0.77
28 7 0.11
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (27 bp):
TGATTTGTGAAATTACCGAAATACCCC
Found at i:102902824 original size:27 final size:27
Alignment explanation
Indices: 102902794--102902845 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
102902784 GGTTTGCAAA
102902794 ATTATCGAAATACCCCTATAGGGTAGG
1 ATTATCGAAATACCCCTATAGGGTAGG
*
102902821 ATTATCGTAATACCCCTATAGGGTA
1 ATTATCGAAATACCCCTATAGGGTA
102902846 AAATGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (27 bp):
ATTATCGAAATACCCCTATAGGGTAGG
Found at i:102902861 original size:27 final size:26
Alignment explanation
Indices: 102902802--102902879 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 26
102902792 AAATTATCGA
** * *
102902802 AATACCCCTATAGGGTAGGATTATCG
1 AATACCCCTATAGGGTAAAATGACCG
102902828 TAATACCCCTATAGGGTAAAATGACCG
1 -AATACCCCTATAGGGTAAAATGACCG
* *
102902855 AAGTACCCCTGTATGGTAAAATGAC
1 AA-TACCCCTATAGGGTAAAATGAC
102902880 GATTATGCCC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (26 bp):
AATACCCCTATAGGGTAAAATGACCG
Found at i:102903098 original size:27 final size:27
Alignment explanation
Indices: 102903016--102903100 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 27
102903006 ATGGAGGAAG
* *
102903016 TACT-ATACTGGTGACTATGTCACATT
1 TACTGATACTGGTGGCTATGCCACATT
* * *
102903042 CACTGTTACTGGTGGCTATGCCACAAT
1 TACTGATACTGGTGGCTATGCCACATT
* *
102903069 TACTGATACTGGTGGCTTTGCCACGTT
1 TACTGATACTGGTGGCTATGCCACATT
102903096 TACTG
1 TACTG
102903101 TTTCTGGCAA
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 3 0.06
27 45 0.94
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACATT
Found at i:102904115 original size:96 final size:96
Alignment explanation
Indices: 102903917--102904137 Score: 243
Period size: 96 Copynumber: 2.3 Consensus size: 96
102903907 ATGAGATTCC
* *
102903917 GTGTAAGACCATGTCTGGGACATGGCATTGACATTTGAGATGTGTGCCTGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATAGACA-TTGAGATGTGTGCCAGTGTAAGACCATGTCT
* **
102903982 GGGACATGGCATCGGTGATGATATATGTGCCA
65 AGGACATGGCATCGGCAATGATATATGTGCCA
* *
102904014 GTGTAAGACCATGTCTAGGACATGGCATCAG-CGA-TGATATGTGTGCCAGTGTAAGACCATGTC
1 GTGTAAGACCATGTCTGGGACATGGCAT-AGAC-ATTGAGATGTGTGCCAGTGTAAGACCATGTC
* * * * *
102904077 TATGACATGTCATTGGCAATGATATGTG-GATTCA
64 TAGGACATGGCATCGGCAATGATATATGTG--CCA
* *
102904111 -TGTAAGATCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
102904138 TGGTACTTTA
Statistics
Matches: 105, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
95 1 0.01
96 72 0.69
97 30 0.29
98 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATAGACATTGAGATGTGTGCCAGTGTAAGACCATGTCTA
GGACATGGCATCGGCAATGATATATGTGCCA
Found at i:102904124 original size:48 final size:48
Alignment explanation
Indices: 102903917--102904104 Score: 216
Period size: 48 Copynumber: 3.9 Consensus size: 48
102903907 ATGAGATTCC
* * * * *
102903917 GTGTAAGACCATGTCTGGGACATGGCAT-TGACATTTGAGATGTGTGCCT
1 GTGTAAGACCATGTCTAGGACATGGCATCAG-CA-ATGATATGTGTGCCA
* * ** *
102903966 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCAATGATATGTGTGCCA
*
102904014 GTGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCAATGATATGTGTGCCA
* * **
102904062 GTGTAAGACCATGTCTATGACATGTCATTGGCAATGATATGTG
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCAATGATATGTG
102904105 GATTCATGTA
Statistics
Matches: 122, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
48 93 0.76
49 28 0.23
50 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATGTCTAGGACATGGCATCAGCAATGATATGTGTGCCA
Found at i:102907880 original size:15 final size:15
Alignment explanation
Indices: 102907842--102907874 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
102907832 TGGTTTATCA
102907842 TGGATTTCTTTGTCT
1 TGGATTTCTTTGTCT
102907857 TGGATTTCTTTGTCT
1 TGGATTTCTTTGTCT
102907872 TGG
1 TGG
102907875 TCTTCTCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (15 bp):
TGGATTTCTTTGTCT
Found at i:102911027 original size:218 final size:206
Alignment explanation
Indices: 102910658--102911054 Score: 589
Period size: 218 Copynumber: 1.9 Consensus size: 206
102910648 TGAAGCACAA
*
102910658 GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTCATGTGTTATTGTTATTAGTTTGGTTTG
1 GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTCATGTATTATTGTTATTAGTTTGGTTTG
*
102910723 GTTTGTTGTTGTTGTTTGAGCTTTTGTTGTGTTCTTTTTTTTTTTTTGGACTGGTGTAGGTTTCT
66 GTTTGTTGTTGTTGTTTGAACTTTTGTTGTGTTC-TTTTTTTTTTTTGGACTGGTGTAGGTTTCT
102910788 ATTGTATTTTGGACTTTTGCTTATGTTTTTTTTTATTACAATGTTGTTGTATTGTTTTTATTGTT
130 ATTGTATTTTGGACTTTTGCTTATG-TTTTTTTTATTACAATGTTGTTGTATTGTTTTTATTGTT
102910853 TATTTGGACTAAT
194 TATTTGGACTAAT
* * *
102910866 GAAGAAAGTTAAGCTATTCTATAATGGTTTTTGAGCTGATGTATTATTGTTATTAGTTTCGTTTG
1 GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTCATGTATTATTGTTATTA-----GTTTG
*
102910931 GTTTGGTTTGTTATTGTTGTTGGTTAATTGAACTTTTGTTGTGTTC-TTTTTTTTTTTGGAGTGG
61 GTTTGGTTTG---TTGTTGTT-G-T--TTGAACTTTTGTTGTGTTCTTTTTTTTTTTTGGACTGG
* *
102910995 TGTAGGTTTCTATTGTATTTTGGAGTTTTGCTTATGTTTTTTTTATTATAATGTTGTTGT
119 TGTAGGTTTCTATTGTATTTTGGACTTTTGCTTATGTTTTTTTTATTACAATGTTGTTGT
102911055 TTACTTCGAC
Statistics
Matches: 169, Mismatches: 8, Indels: 15
0.88 0.04 0.08
Matches are distributed among these distances:
208 51 0.30
213 15 0.09
216 8 0.05
217 24 0.14
218 53 0.31
220 18 0.11
ACGTcount: A:0.17, C:0.05, G:0.21, T:0.57
Consensus pattern (206 bp):
GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTCATGTATTATTGTTATTAGTTTGGTTTG
GTTTGTTGTTGTTGTTTGAACTTTTGTTGTGTTCTTTTTTTTTTTTGGACTGGTGTAGGTTTCTA
TTGTATTTTGGACTTTTGCTTATGTTTTTTTTATTACAATGTTGTTGTATTGTTTTTATTGTTTA
TTTGGACTAAT
Found at i:102911326 original size:5 final size:5
Alignment explanation
Indices: 102911316--102911341 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
102911306 GAACAAATAT
102911316 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
102911342 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:102911865 original size:36 final size:36
Alignment explanation
Indices: 102911818--102911887 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
102911808 TCGAATAATA
102911818 TGAATAATAAATAAGCTACATTTGAAATGTTAGATG
1 TGAATAATAAATAAGCTACATTTGAAATGTTAGATG
102911854 TGAATAATAAATAAGCTACATTTGAAATGTTAGA
1 TGAATAATAAATAAGCTACATTTGAAATGTTAGA
102911888 CAAAGAAAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.33
Consensus pattern (36 bp):
TGAATAATAAATAAGCTACATTTGAAATGTTAGATG
Found at i:102912359 original size:48 final size:48
Alignment explanation
Indices: 102912244--102912510 Score: 315
Period size: 48 Copynumber: 5.5 Consensus size: 48
102912234 AAATGAGATT
*
102912244 CTGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATCTGAGATGTGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGACGA--TGATATGTGTGC
* ** * *
102912293 CTGTGTAGGACCATGTCTGGGACATGTTATCGATGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGC
* * *
102912341 CTGTGTAAGACCATGTCTGGGACATGGAATC-AGCGATCATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGA-CGATGATATGTGTGC
* *
102912389 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGC
* * * *
102912437 CAGTGTAAGACCATGTCTAGGACATGGCATAGACGATGATATGTG-GA
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGC
* * *
102912484 TTCATGTAAGACCATGTCGGGGACATG
1 CT-GTGTAAGACCATGTCTGGGACATG
102912511 TCATTGGTAC
Statistics
Matches: 189, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.01
48 156 0.83
49 30 0.16
50 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGC
Found at i:102912507 original size:144 final size:144
Alignment explanation
Indices: 102912246--102912510 Score: 363
Period size: 144 Copynumber: 1.8 Consensus size: 144
102912236 ATGAGATTCT
* *
102912246 GTGTAAGACCATGTCTGGGACATGGCATCGACATCTGAGATGTGTGCCTGTGTAGGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACA-CTGAGATGTGTGCCAGTGTAAGACCATGTCT
* ** * * * * *
102912311 GGGACATGTTATCGATGATGATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGAATCAGCG
65 AGGACATGGCATAGACGATGATATATGTGACTATGTAAGACCATGTCGGGGACATGGAATCAGCG
102912376 ATCATATATGTGCCA
130 ATCATATATGTGCCA
* *
102912391 GTGTAAGACCATGTCTGGGACATGGCATCGGCGA-TGATATGTGTGCCAGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC-ACTGAGATGTGTGCCAGTGTAAGACCATGTCT
* *
102912455 AGGACATGGCATAGACGATGATATGTG-GATTCATGTAAGACCATGTCGGGGACATG
65 AGGACATGGCATAGACGATGATATATGTGACT-ATGTAAGACCATGTCGGGGACATG
102912511 TCATTGGTAC
Statistics
Matches: 104, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
143 2 0.02
144 70 0.67
145 31 0.30
146 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (144 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACACTGAGATGTGTGCCAGTGTAAGACCATGTCTA
GGACATGGCATAGACGATGATATATGTGACTATGTAAGACCATGTCGGGGACATGGAATCAGCGA
TCATATATGTGCCA
Found at i:102915049 original size:6 final size:6
Alignment explanation
Indices: 102915038--102915116 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
102915028 TATCGGAACT
* * *
102915038 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AAAATC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
102915087 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
102915117 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.82
7 5 0.09
8 2 0.04
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:102915076 original size:31 final size:31
Alignment explanation
Indices: 102915040--102915116 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
102915030 TCGGAACTAG
*
102915040 AATCAGAATCAGAATCAGAATCAGGTGACAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
* * *
102915071 AATCAGAATCAAAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
*
102915102 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
102915117 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAA
Found at i:102915380 original size:27 final size:26
Alignment explanation
Indices: 102915333--102915383 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
102915323 CGAGGCTGCC
*
102915333 AGATATTGTGACGAAGTCACCAGAAA
1 AGATATTGTGACGAAGCCACCAGAAA
* *
102915359 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
102915384 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAA
Found at i:102915650 original size:27 final size:27
Alignment explanation
Indices: 102915620--102915949 Score: 392
Period size: 27 Copynumber: 12.2 Consensus size: 27
102915610 AACACCCTAG
* * *
102915620 GGGTAAAATGGTAATTTTATAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * * *
102915647 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
102915674 AGGTAAAATAATAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
102915701 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
102915728 GGGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
102915755 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * *
102915782 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
102915809 GGGTAAAATAATAATTCTGTCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
102915836 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
102915863 GGGT-AAATCGATAATTTTATAAATCGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
*
102915890 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
102915917 GGGTAAAACAGTAATTTTTGTAATTCGA
1 GGGTAAAATAGTAA-TTTTGTAAATCGA
*
102915945 AGGTA
1 GGGTA
102915950 CTTTGATAAT
Statistics
Matches: 262, Mismatches: 38, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 5 0.02
27 237 0.90
28 20 0.08
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:102915760 original size:81 final size:81
Alignment explanation
Indices: 102915620--102915949 Score: 471
Period size: 81 Copynumber: 4.1 Consensus size: 81
102915610 AACACCCTAG
* * * * * * *
102915620 GGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTATAAATCAAAGGTAAAATAA
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
102915685 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * *
102915701 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAATAG
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
102915766 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
102915782 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTCTGTCAATCGAGGGTAAAATAG
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
102915847 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
102915863 GGGTAAATCGATAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAG
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
*
102915928 TAATTTTTGTAATTCGA
66 TAA-TTTTGTAAATCGA
*
102915945 AGGTA
1 GGGTA
102915950 CTTTGATAAT
Statistics
Matches: 225, Mismatches: 23, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
81 209 0.93
82 16 0.07
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:102916000 original size:27 final size:27
Alignment explanation
Indices: 102915970--102916095 Score: 89
Period size: 27 Copynumber: 4.7 Consensus size: 27
102915960 TTTACATGTC
*
102915970 GAGGGTATTTCAATAATTTTCCAAACT
1 GAGGGTATTTCAATAATTTTACAAACT
**
102915997 GAGGGTATTTCGGTAATTTTACAAA-T
1 GAGGGTATTTCAATAATTTTACAAACT
* *** *
102916023 CGAGGATATTTGTGTAATTTTATAAACT
1 -GAGGGTATTTCAATAATTTTACAAACT
* **
102916051 GGGGGTACTTT-GGTAATTTTAC-AACT
1 GAGGGTA-TTTCAATAATTTTACAAACT
*
102916077 -AGGGGTATTTCAGTAATTT
1 GA-GGGTATTTCAATAATTT
102916096 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
25 3 0.04
26 17 0.21
27 57 0.70
28 4 0.05
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GAGGGTATTTCAATAATTTTACAAACT
Found at i:102916027 original size:54 final size:54
Alignment explanation
Indices: 102915946--102916095 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 54
102915936 GTAATTCGAA
* ** * *
102915946 GGTACTTTGATAATTTTACATGTCGAGGGTATTTCAATAATTTTCCAAACTGAG
1 GGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGAG
* ** * *
102916000 GGTA-TTTCGGTAATTTTACAAATCGAGGATATTTGTGTAATTTTATAAACTGGG
1 GGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGAG
* *
102916054 GGTACTTTGGTAATTTTACAACTAG-GGGTATTTCAGTAATTT
1 GGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
102916096 GGTAAACTAA
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
53 17 0.22
54 59 0.75
55 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.41
Consensus pattern (54 bp):
GGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGAG
Found at i:102929416 original size:40 final size:40
Alignment explanation
Indices: 102929372--102929499 Score: 193
Period size: 40 Copynumber: 3.1 Consensus size: 40
102929362 TTAAGTCTGG
* * *
102929372 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACTCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
* *
102929414 ATATATTACCAGCACGAAGCCGGTGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
102929454 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
102929494 ATATAT
1 ATATAT
102929500 ATTATATCGA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 46 0.58
42 33 0.42
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:102929428 original size:42 final size:42
Alignment explanation
Indices: 102929372--102929503 Score: 205
Period size: 42 Copynumber: 3.2 Consensus size: 42
102929362 TTAAGTCTGG
* * *
102929372 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACTCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
102929414 ATATATTACCAGCACGAAGCCGGTGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
102929454 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
102929496 ATATATTA
1 ATATATTA
102929504 TATCGATAGT
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 38 0.47
42 43 0.53
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:102936114 original size:17 final size:17
Alignment explanation
Indices: 102936092--102936125 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
102936082 AGCATGAGTT
102936092 TGAATATTATTGTTATG
1 TGAATATTATTGTTATG
102936109 TGAATATTATTGTTATG
1 TGAATATTATTGTTATG
102936126 ATTTATGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (17 bp):
TGAATATTATTGTTATG
Found at i:102936895 original size:50 final size:50
Alignment explanation
Indices: 102936820--102936914 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
102936810 TACATGGCAC
* * **
102936820 CATATCATGTAAGACCATAGCTGGTGGGATATGGTATCATATGGAAATAA
1 CATATCATATAAGACCATAACTGGTGGGATATGACATCATATGGAAATAA
* *
102936870 CATATCATATAAGACCATAATTGGTGGGTTATGACATCATATGGA
1 CATATCATATAAGACCATAACTGGTGGGATATGACATCATATGGA
102936915 TAGAACTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (50 bp):
CATATCATATAAGACCATAACTGGTGGGATATGACATCATATGGAAATAA
Found at i:102937484 original size:27 final size:27
Alignment explanation
Indices: 102937454--102937506 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
102937444 GTGTATGGAA
102937454 AACTCTGAAGGAATAGTACGCGTGGCG
1 AACTCTGAAGGAATAGTACGCGTGGCG
102937481 AACTCTGAAGGAATAGTACGCGTGGC
1 AACTCTGAAGGAATAGTACGCGTGGC
102937507 TTAGTGTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.32, T:0.19
Consensus pattern (27 bp):
AACTCTGAAGGAATAGTACGCGTGGCG
Found at i:102941330 original size:33 final size:33
Alignment explanation
Indices: 102941291--102941367 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
102941281 GAAATTTATC
* *
102941291 TCGTGTTTACT-TCCCTGATGGACTATCTCTATT
1 TCGTGTTTACTGTCCC-AACGGACTATCTCTATT
* *
102941324 AT-GTGTTTATTGTCCCAACGGACTATCTCTGTT
1 -TCGTGTTTACTGTCCCAACGGACTATCTCTATT
102941357 TCGTGTTTACT
1 TCGTGTTTACT
102941368 ATCCTGGTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
32 1 0.03
33 30 0.83
34 5 0.14
ACGTcount: A:0.16, C:0.22, G:0.17, T:0.45
Consensus pattern (33 bp):
TCGTGTTTACTGTCCCAACGGACTATCTCTATT
Found at i:102942283 original size:20 final size:20
Alignment explanation
Indices: 102942260--102942297 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
102942250 TTATTAATAT
102942260 TTTGAATTGATTTTTAAAAC
1 TTTGAATTGATTTTTAAAAC
102942280 TTTGAATTGATTTTTAAA
1 TTTGAATTGATTTTTAAA
102942298 TGATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
TTTGAATTGATTTTTAAAAC
Found at i:102944510 original size:46 final size:46
Alignment explanation
Indices: 102944443--102944703 Score: 389
Period size: 46 Copynumber: 5.7 Consensus size: 46
102944433 GTGCTCTCTA
* *
102944443 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAGCCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * *
102944489 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAGCTTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
102944535 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
102944581 ATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * *
102944627 ATATGAAATGTGTAAAACCATGATTGAAAGATACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * *
102944673 ACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATATG-AAATGTGTAAGACCATGGTTGAAAGA
102944704 CACTATAGCA
Statistics
Matches: 196, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 195 0.99
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:102950302 original size:34 final size:34
Alignment explanation
Indices: 102950259--102950326 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
102950249 TGAAATGTAA
102950259 TTATTTTTGTTGTTACCCAAGCCTAGTCAAACTT
1 TTATTTTTGTTGTTACCCAAGCCTAGTCAAACTT
102950293 TTATTTTTGTTGTTACCCAAGCCTAGTCAAACTT
1 TTATTTTTGTTGTTACCCAAGCCTAGTCAAACTT
102950327 ATAACATGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.44
Consensus pattern (34 bp):
TTATTTTTGTTGTTACCCAAGCCTAGTCAAACTT
Found at i:102951748 original size:27 final size:27
Alignment explanation
Indices: 102951718--102952005 Score: 212
Period size: 27 Copynumber: 10.7 Consensus size: 27
102951708 ATCACATAGG
**
102951718 GGCAAAACAGTCATCCTACCACATAAA
1 GGCAAAACAGTCATTTTACCACATAAA
* **
102951745 GGCAAAATAGTCATTTTACCTTATAAA
1 GGCAAAACAGTCATTTTACCACATAAA
*
102951772 GGCAAAACCA-TCATTTTACAACAT-AA
1 GGCAAAA-CAGTCATTTTACCACATAAA
* * *
102951798 GGACAAAACTGTCATTTTAACACATAAG
1 GG-CAAAACAGTCATTTTACCACATAAA
* * *
102951826 GGCAAAACAGTCATTTTA--AAACAAG
1 GGCAAAACAGTCATTTTACCACATAAA
* * *
102951851 GGCAAAACAGCCATTTTTCCACATAAG
1 GGCAAAACAGTCATTTTACCACATAAA
* *
102951878 GGTAAAATCA-TCATTTTATCACAT-AA
1 GGCAAAA-CAGTCATTTTACCACATAAA
** * ** * * *
102951904 GGACAAAATTGTCGTTTTATTATACAAG
1 GG-CAAAACAGTCATTTTACCACATAAA
* *
102951932 GGCAAAACAGTCATTTTGCCACATAAG
1 GGCAAAACAGTCATTTTACCACATAAA
* *
102951959 GGCAAAATC-GTCATTTTATCACATAAG
1 GGCAAAA-CAGTCATTTTACCACATAAA
*
102951986 GGCAAAATAGTCATTTTACC
1 GGCAAAACAGTCATTTTACC
102952006 CTATAGGGGT
Statistics
Matches: 204, Mismatches: 45, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
25 21 0.10
26 8 0.04
27 165 0.81
28 10 0.05
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (27 bp):
GGCAAAACAGTCATTTTACCACATAAA
Found at i:102951957 original size:81 final size:81
Alignment explanation
Indices: 102951710--102952003 Score: 332
Period size: 81 Copynumber: 3.7 Consensus size: 81
102951700 GAACATACAT
* ** * *
102951710 CACATAGGGGCAAAA-CAGTCATCCTACCACATAAAGGCAAAATAGTCATTTTACCTTATA-AA-
1 CACATAAGGGCAAAATC-GTCATTTTATCACATAAGGGCAAAATAGTCATTTTA--TTATACAAG
102951772 GGCAAAACCA-TCATTTTAC
63 GGCAAAA-CAGTCATTTTAC
* * * * *
102951791 AACATAAGGACAAAA-CTGTCATTTTAACACATAAGGGCAAAACAGTCATTTTA--AAACAAGGG
1 CACATAAGGGCAAAATC-GTCATTTTATCACATAAGGGCAAAATAGTCATTTTATTATACAAGGG
* *
102951853 CAAAACAGCCATTTTTC
65 CAAAACAGTCATTTTAC
* * * * *
102951870 CACATAAGGGTAAAATCATCATTTTATCACATAAGGACAAAATTGTCGTTTTATTATACAAGGGC
1 CACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATAGTCATTTTATTATACAAGGGC
*
102951935 AAAACAGTCATTTTGC
66 AAAACAGTCATTTTAC
102951951 CACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATAGTCATTTTA
102952004 CCCTATAGGG
Statistics
Matches: 178, Mismatches: 29, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
77 2 0.01
78 4 0.02
79 56 0.31
80 1 0.01
81 115 0.65
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (81 bp):
CACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATAGTCATTTTATTATACAAGGGC
AAAACAGTCATTTTAC
Found at i:102952000 original size:54 final size:54
Alignment explanation
Indices: 102951708--102952005 Score: 277
Period size: 54 Copynumber: 5.6 Consensus size: 54
102951698 ATGAACATAC
* ** * *
102951708 ATCACATAGGGGCAAAACAGTCATCCTACCACATAAAGGCAAAATAGTCATTTT
1 ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATCGTCATTTT
* ** * * *
102951762 ACCTTATAAAGGCAAAACCA-TCATTTTACAACATAAGGACAAAA-CTGTCATTTT
1 ATCACATAAGGGCAAAA-CAGTCATTTTACCACATAAGGGCAAAATC-GTCATTTT
* * * *
102951816 AACACATAAGGGCAAAACAGTCATTTTA--AAACAAGGGCAAAA-CAGCCATTTT
1 ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATC-GTCATTTT
* * * * *
102951868 -TCCACATAAGGGTAAAATCA-TCATTTTATCACATAAGGACAAAATTGTCGTTTT
1 AT-CACATAAGGGCAAAA-CAGTCATTTTACCACATAAGGGCAAAATCGTCATTTT
* * * *
102951922 ATTATACAAGGGCAAAACAGTCATTTTGCCACATAAGGGCAAAATCGTCATTTT
1 ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATCGTCATTTT
*
102951976 ATCACATAAGGGCAAAATAGTCATTTTACC
1 ATCACATAAGGGCAAAACAGTCATTTTACC
102952006 CTATAGGGGT
Statistics
Matches: 192, Mismatches: 42, Indels: 20
0.76 0.17 0.08
Matches are distributed among these distances:
52 41 0.21
53 6 0.03
54 142 0.74
55 3 0.02
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (54 bp):
ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATCGTCATTTT
Found at i:102952024 original size:27 final size:27
Alignment explanation
Indices: 102951994--102952243 Score: 301
Period size: 27 Copynumber: 9.3 Consensus size: 27
102951984 AGGGCAAAAT
* *
102951994 AGTCATTTTACCCTATAGGGGTATTAC
1 AGTCATTTTACCCTATGGGGGTATTTC
*
102952021 AGTCATTTTACCCTATGGAGGTATTT-
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
102952047 TGATCATTTTACCATATGGGGGTATTTC
1 AG-TCATTTTACCCTATGGGGGTATTTC
102952075 AGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
* * * *
102952102 GGTCATTTTATCCTAT-AGGGAATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
102952128 -GATCATTTTACTCTATGGGGGTATTTT
1 AG-TCATTTTACCCTATGGGGGTATTTC
* * *
102952155 AGTCATTTTAACCTATGGGGATATTTT
1 AGTCATTTTACCCTATGGGGGTATTTC
*
102952182 GGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
*
102952209 TA-TTATTTTACCCTATGGGGGTATTTC
1 -AGTCATTTTACCCTATGGGGGTATTTC
102952236 AGTCATTT
1 AGTCATTT
102952244 ATTCATCCCA
Statistics
Matches: 189, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.01
26 22 0.12
27 164 0.87
28 2 0.01
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.43
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTATTTC
Found at i:102952170 original size:134 final size:134
Alignment explanation
Indices: 102951996--102952243 Score: 383
Period size: 134 Copynumber: 1.9 Consensus size: 134
102951986 GGCAAAATAG
*
102951996 TCATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATGGAGG-TATTTTGATCATTTTACC
1 TCATTTTACCCTATAGGGGTATTACAGTCATTTTAACCTATGG-GGATATTTTGATCATTTTACC
*
102952060 ATATGGGGGTATTTC-AGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTATCCTATAGGGAA
65 ATATGGGGGTATTTCTA-TCATTTTACCCTATGGGGGTATTTCAGTCATTTTATCCTATAGGGAA
102952124 TTTCGA
129 TTTCGA
* * ** * *
102952130 TCATTTTACTCTATGGGGGTATTTTAGTCATTTTAACCTATGGGGATATTTTGGTCATTTTACCC
1 TCATTTTACCCTATAGGGGTATTACAGTCATTTTAACCTATGGGGATATTTTGATCATTTTACCA
*
102952195 TATGGGGGTATTTCTATTATTTTACCCTATGGGGGTATTTCAGTCATTT
66 TATGGGGGTATTTCTATCATTTTACCCTATGGGGGTATTTCAGTCATTT
102952244 ATTCATCCCA
Statistics
Matches: 103, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
133 2 0.02
134 100 0.97
135 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (134 bp):
TCATTTTACCCTATAGGGGTATTACAGTCATTTTAACCTATGGGGATATTTTGATCATTTTACCA
TATGGGGGTATTTCTATCATTTTACCCTATGGGGGTATTTCAGTCATTTTATCCTATAGGGAATT
TCGA
Found at i:102952217 original size:107 final size:107
Alignment explanation
Indices: 102951996--102952224 Score: 302
Period size: 107 Copynumber: 2.1 Consensus size: 107
102951986 GGCAAAATAG
* *
102951996 TCATTTTACCCTATAGGGGTATTAC-AGTCATTTTACCCTATGGAGGTATTTTGATCATTTTACC
1 TCATTTTACCCTATA-GGGAATTTCGA-TCATTTTACCCTATGGAGGTATTTTGATCATTTTACC
* *
102952060 ATATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCGG
64 ATATGGGGATATTTCAGTCATTTTACCCTATGGGGGTATTTCGA
* * *
102952104 TCATTTTATCCTATAGGGAATTTCGATCATTTTACTCTATGGGGGTATTTT-AGTCATTTTAACC
1 TCATTTTACCCTATAGGGAATTTCGATCATTTTACCCTATGGAGGTATTTTGA-TCATTTT-ACC
** *
102952168 -TATGGGGATATTTTGGTCATTTTACCCTATGGGGGTATTTCTA
64 ATATGGGGATATTTCAGTCATTTTACCCTATGGGGGTATTTCGA
*
102952211 TTATTTTACCCTAT
1 TCATTTTACCCTAT
102952225 GGGGGTATTT
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
106 1 0.01
107 87 0.82
108 18 0.17
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (107 bp):
TCATTTTACCCTATAGGGAATTTCGATCATTTTACCCTATGGAGGTATTTTGATCATTTTACCAT
ATGGGGATATTTCAGTCATTTTACCCTATGGGGGTATTTCGA
Found at i:102958932 original size:24 final size:24
Alignment explanation
Indices: 102958905--102958997 Score: 141
Period size: 24 Copynumber: 3.9 Consensus size: 24
102958895 AAGGCTGTCA
102958905 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
102958929 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
102958953 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
* *
102958977 GGAGAAGATTTAAGAACTGAT
1 GGAGAAGATTTAGGAGCTGAT
102958998 CAAAGAGCAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.38, C:0.04, G:0.37, T:0.22
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:102960680 original size:32 final size:35
Alignment explanation
Indices: 102960626--102960700 Score: 93
Period size: 33 Copynumber: 2.2 Consensus size: 35
102960616 TCGTACTGTT
*
102960626 ATCTGAATAAGGGGCTAAGGCCCAGT-TTAATGTA
1 ATCTGAATAAGGGGCTAAGGCCCAGTATCAATGTA
** *
102960660 ATCTGAA-AA-GGGCTCTGGCCCAGTATCAATGTT
1 ATCTGAATAAGGGGCTAAGGCCCAGTATCAATGTA
102960693 ATCTGAAT
1 ATCTGAAT
102960701 GGGCTTAGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 13 0.37
33 15 0.43
34 7 0.20
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (35 bp):
ATCTGAATAAGGGGCTAAGGCCCAGTATCAATGTA
Found at i:102960712 original size:32 final size:31
Alignment explanation
Indices: 102960622--102960712 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 31
102960612 TGGGTCGTAC
* *
102960622 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTAA
1 TGTTATCTGAAT---GGGCTTAGGCCCAGTTCAA
* *
102960656 TGTAATCTGAAAAGGGCTCT-GGCCCAGTATCAA
1 TGTTATCTG-AATGGGCT-TAGGCCCAGT-TCAA
102960689 TGTTATCTGAATGGGCTTAGGCCC
1 TGTTATCTGAATGGGCTTAGGCCC
102960713 GATGGGCTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
31 1 0.02
32 25 0.53
33 11 0.23
34 8 0.17
35 2 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (31 bp):
TGTTATCTGAATGGGCTTAGGCCCAGTTCAA
Found at i:102962282 original size:21 final size:21
Alignment explanation
Indices: 102962258--102962299 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
102962248 GTGGGACGAG
102962258 GCATATCAGTGGTGGATCACT
1 GCATATCAGTGGTGGATCACT
*
102962279 GCATATTAGTGGTGGATCACT
1 GCATATCAGTGGTGGATCACT
102962300 ATGAGAGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (21 bp):
GCATATCAGTGGTGGATCACT
Found at i:102966931 original size:29 final size:29
Alignment explanation
Indices: 102966897--102967028 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
102966887 TACTCGATTT
** * *
102966897 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
102966926 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
102966955 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
102966984 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
102967013 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
102967029 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:102974814 original size:29 final size:29
Alignment explanation
Indices: 102974780--102974911 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
102974770 TACTCGATTT
** * *
102974780 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
102974809 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
102974838 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
102974867 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
102974896 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
102974912 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:102977511 original size:24 final size:24
Alignment explanation
Indices: 102977478--102977575 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
102977468 AAGGCTATCA
102977478 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
102977502 GGAGAGGATTTAAGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
102977526 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
102977550 GGAGAAAATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
102977575 G
1 G
102977576 AGCAGGAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 63 0.95
25 3 0.05
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:102980131 original size:27 final size:27
Alignment explanation
Indices: 102980088--102980466 Score: 416
Period size: 27 Copynumber: 14.0 Consensus size: 27
102980078 GGACATACAT
* ***
102980088 CACATAGGGGCAAAATAGTCATCCAAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
102980115 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
102980142 CACATAAGGGTAAAATAGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
102980169 CACATAAGGACAAAATAGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
102980196 CATACAAGGGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
102980223 CACATAATGGCAAAATCGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * * *
102980250 CACATATGGACAAAATCGTAATTTTAA
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
102980277 CACATAAGGGCAAAACAGTAATTTTTC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
102980304 CACATAAGGGCAAAATCGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
102980331 CACACAAGGGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
102980358 GACATAAGGGCAAAACAGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
** *
102980385 CACATAAGGGCAAAACCGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * *
102980412 CACAGAAAGGCAAAATCGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
*
102980439 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
102980466 C
1 C
102980467 CTACAGGGGT
Statistics
Matches: 296, Mismatches: 56, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 296 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:102980183 original size:81 final size:81
Alignment explanation
Indices: 102980086--102980466 Score: 476
Period size: 81 Copynumber: 4.7 Consensus size: 81
102980076 ATGGACATAC
* * *** * *
102980086 ATCACATAGGGGCAAAATAGTCATCCAACCATATAAGGGCAAAATAGTCATTTTACCACATAAGG
1 ATCACATAAGGACAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCACATAAGG
* *
102980151 GTAAAATAGTCATTTT
66 GCAAAATCGTCATTTT
* * * * * *
102980167 ATCACATAAGGACAAAATAGTCATTTTATCATACAAGGGCAAAATAGTCATTTTGCCACATAATG
1 ATCACATAAGGACAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCACATAAGG
102980232 GCAAAATCGTCATTTT
66 GCAAAATCGTCATTTT
* * * * * *
102980248 ATCACATATGGACAAAATCGTAATTTTAACACATAAGGGCAAAACAGTAATTTTTCCACATAAGG
1 ATCACATAAGGACAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCACATAAGG
102980313 GCAAAATCGTCATTTT
66 GCAAAATCGTCATTTT
* * * * *
102980329 ATCACACAAGGGCAAAATAGTCATTTTGCGACATAAGGGCAAAACAGTCATTTTATCACATAAGG
1 ATCACATAAGGACAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCACATAAGG
*
102980394 GCAAAACCGTCATTTT
66 GCAAAATCGTCATTTT
* * *
102980410 ATCACAGAAAGG-CAAAATCGTCATTTTATCACATAAGGGCAAAACAGTCATTTTACC
1 ATCACA-TAAGGACAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACC
102980467 CTACAGGGGT
Statistics
Matches: 260, Mismatches: 39, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 256 0.98
82 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (81 bp):
ATCACATAAGGACAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCACATAAGG
GCAAAATCGTCATTTT
Found at i:102980485 original size:27 final size:27
Alignment explanation
Indices: 102980456--102980732 Score: 369
Period size: 27 Copynumber: 10.3 Consensus size: 27
102980446 GGGCAAAACA
** *
102980456 GTCATTTTACCCTACAGGGGTATTAT-A
1 GTCATTTTACCCTATGGGGGTATT-TCG
*
102980483 GTCATTTTACCCTATGGGGGTCTTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
102980510 GTTATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
102980537 ATCATTTGACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
102980564 GTCATTTTATCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
102980591 GTCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
102980618 GTCATTTTACCATAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* ** *
102980644 GTCATTTTACCTTATAAGGGTATTTCT
1 GTCATTTTACCCTATGGGGGTATTTCG
*
102980671 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
102980698 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
102980725 GTTATTTT
1 GTCATTTT
102980733 TTCATCCCAA
Statistics
Matches: 218, Mismatches: 30, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
26 25 0.11
27 193 0.89
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:102980685 original size:107 final size:108
Alignment explanation
Indices: 102980456--102980732 Score: 380
Period size: 107 Copynumber: 2.6 Consensus size: 108
102980446 GGGCAAAACA
* * *
102980456 GTCATTTTACCCTA-CAGGGGTATTAT-AGTCATTTTACCCTATGGGGGTCTTTCGGTTATTTTA
1 GTCATTTTACCCTATGA-GGGTATT-TCGGTCATTTTACCCTATGGGGGTATTTCGGTTATTTTA
* **
102980519 CCCTATGAGGGTATTTCGATCATTTGACCCTATGGGGGTATTTCG
64 CCATATGAGGGTATTTCGATCATTTGACCCTATAAGGGTATTTCG
* * *
102980564 GTCATTTTATCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACC
1 GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTTATTTTACC
* * * *
102980629 ATATG-GGGTATTTCGGTCATTTTACCTTATAAGGGTATTTCT
66 ATATGAGGGTATTTCGATCATTTGACCCTATAAGGGTATTTCG
* *
102980671 GTTATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTTATTTT
1 GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTTATTTT
102980733 TTCATCCCAA
Statistics
Matches: 149, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
107 89 0.60
108 59 0.40
109 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43
Consensus pattern (108 bp):
GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTTATTTTACC
ATATGAGGGTATTTCGATCATTTGACCCTATAAGGGTATTTCG
Found at i:102982107 original size:30 final size:30
Alignment explanation
Indices: 102982072--102982130 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
102982062 CTGGAGACAC
* *
102982072 GGTCGTGTGTAATACACGGCCTAGACACAT
1 GGTCGTGTGTAATACACGACCTAAACACAT
*
102982102 GGTCGTGTGTGATACACGACCTAAACACA
1 GGTCGTGTGTAATACACGACCTAAACACA
102982131 CAGGCGAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (30 bp):
GGTCGTGTGTAATACACGACCTAAACACAT
Found at i:102983517 original size:20 final size:20
Alignment explanation
Indices: 102983480--102983524 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
102983470 AAATGTAAAC
102983480 TTGTGAAAATTGATGAAAAA
1 TTGTGAAAATTGATGAAAAA
* *
102983500 TTGT-AAAATTTATGGAAAA
1 TTGTGAAAATTGATGAAAAA
102983519 TATGTG
1 T-TGTG
102983525 CTGTAAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (20 bp):
TTGTGAAAATTGATGAAAAA
Found at i:102983869 original size:15 final size:15
Alignment explanation
Indices: 102983844--102983887 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
102983834 ATTATGTTAA
102983844 ATTGAATGTGAATTAT
1 ATTG-ATGTGAATTAT
*
102983860 ATTGATGTGACTTAT
1 ATTGATGTGAATTAT
102983875 ATTGATGTGAATT
1 ATTGATGTGAATT
102983888 GTTTGATTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (15 bp):
ATTGATGTGAATTAT
Found at i:102985721 original size:36 final size:36
Alignment explanation
Indices: 102985681--102985750 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
102985671 CGACTGCCCT
*
102985681 TGCACCCTTCGCACTCATACACCATCGTCCCTGGCC
1 TGCACCCTCCGCACTCATACACCATCGTCCCTGGCC
** *
102985717 TGCACCCTCCGCACTCATACGTCATTGTCCCTGG
1 TGCACCCTCCGCACTCATACACCATCGTCCCTGG
102985751 TTTATTTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.16, C:0.44, G:0.16, T:0.24
Consensus pattern (36 bp):
TGCACCCTCCGCACTCATACACCATCGTCCCTGGCC
Found at i:102985898 original size:5 final size:5
Alignment explanation
Indices: 102985871--102985931 Score: 90
Period size: 5 Copynumber: 12.4 Consensus size: 5
102985861 TTTGTTTTTA
*
102985871 TTATT TTA-- TTATT TTAATA TTATT TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TT-ATT TTATT TTATT TTATT TTATT TTATT TTATT
102985920 TTATT TTATT TT
1 TTATT TTATT TT
102985932 TATATTGTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
3 3 0.06
5 44 0.86
6 4 0.08
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:102986796 original size:24 final size:23
Alignment explanation
Indices: 102986756--102986800 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
102986746 TATTTATTTA
102986756 TTTTTACTTTTGTTTGTACTTTTC
1 TTTTTACTTTTGTTTGT-CTTTTC
*
102986780 TTTTTATTTTTAG-TTGTCTTT
1 TTTTTACTTTT-GTTTGTCTTT
102986801 ATGTTATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 14 0.74
25 1 0.05
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.73
Consensus pattern (23 bp):
TTTTTACTTTTGTTTGTCTTTTC
Found at i:102989653 original size:49 final size:49
Alignment explanation
Indices: 102989581--102989812 Score: 338
Period size: 49 Copynumber: 4.7 Consensus size: 49
102989571 ATGGTATGCA
* * *
102989581 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
** *
102989630 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * *
102989680 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
*
102989731 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
102989780 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
102989813 TCACACTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
49 74 0.46
50 48 0.30
51 39 0.24
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:102989754 original size:101 final size:98
Alignment explanation
Indices: 102989581--102989812 Score: 347
Period size: 100 Copynumber: 2.3 Consensus size: 98
102989571 ATGGTATGCA
* * * *
102989581 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
102989646 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACC-AACCATCTGATACACG
* *
102989680 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
102989745 TAGTACTACACATGTGACCAATTATCTGGTACACG
64 TAGTACTACACACGTGACCAACCATCTGATACACG
102989780 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
102989813 TCACACTAGC
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
99 30 0.25
100 47 0.39
101 43 0.36
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCAACCATCTGATACACG
Found at i:102990493 original size:30 final size:30
Alignment explanation
Indices: 102990459--102990518 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
102990449 ATTTAATATG
102990459 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
102990489 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
102990519 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:102994107 original size:40 final size:40
Alignment explanation
Indices: 102994052--102994235 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
102994042 ACTACTTGCT
*
102994052 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
102994092 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
102994132 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
102994171 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
102994211 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
102994236 TTATCATCCG
Statistics
Matches: 137, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
38 1 0.01
39 35 0.26
40 101 0.74
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:102994191 original size:79 final size:80
Alignment explanation
Indices: 102994052--102994235 Score: 309
Period size: 79 Copynumber: 2.3 Consensus size: 80
102994042 ACTACTTGCT
* *
102994052 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
102994117 -ATATAGTAACTCGCA
66 AAT-TAGTAACTAGCA
102994132 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTC-CACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
102994196 AATTAGTCACTAGCA
66 AATTAGTAACTAGCA
102994211 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
102994236 TTATCATCCG
Statistics
Matches: 99, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
79 61 0.62
80 38 0.38
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTAGCA
Found at i:102998244 original size:47 final size:47
Alignment explanation
Indices: 102998181--102998285 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
102998171 CCCTTCGGGA
* *
102998181 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
102998228 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
102998275 CTTATCACATA
1 CTTATCACATA
102998286 ATTAATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:103002972 original size:17 final size:17
Alignment explanation
Indices: 103002947--103002979 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
103002937 ATAATAAATT
*
103002947 AATATGTTATAATATAA
1 AATAAGTTATAATATAA
103002964 AATAAGTTATAATATA
1 AATAAGTTATAATATA
103002980 TTAAGCGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (17 bp):
AATAAGTTATAATATAA
Found at i:103004326 original size:24 final size:24
Alignment explanation
Indices: 103004294--103004402 Score: 121
Period size: 24 Copynumber: 4.5 Consensus size: 24
103004284 GAAATGACAT
*
103004294 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTAGAA
*
103004318 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTAGAA
* **
103004342 TGGCACTACGTGTATGGATTAGCAA
1 TGGCACTATGTGTGCGGATTAG-AA
* * * *
103004367 -GGCACTTTGTGTGTGGGTTAGCA
1 TGGCACTATGTGTGCGGATTAGAA
103004390 TGGCACTATGTGT
1 TGGCACTATGTGT
103004403 ACGAATTTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 1 0.01
24 70 0.96
25 2 0.03
ACGTcount: A:0.20, C:0.14, G:0.33, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTAGAA
Found at i:103009461 original size:5 final size:5
Alignment explanation
Indices: 103009451--103009482 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
103009441 TTGTGTGTTC
103009451 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
103009483 TCACAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:103009465 original size:9 final size:9
Alignment explanation
Indices: 103009451--103009481 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
103009441 TTGTGTGTTC
103009451 TTTATTTTA
1 TTTATTTTA
103009460 TTTATTTTA
1 TTTATTTTA
103009469 TTTTATTTTA
1 -TTTATTTTA
103009479 TTT
1 TTT
103009482 TTCACAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:103010316 original size:23 final size:24
Alignment explanation
Indices: 103010249--103010324 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 24
103010239 ACTATTATAT
103010249 TTTGTTCGACTGTTCACACATGAA
1 TTTGTTCGACTGTTCACACATGAA
* *
103010273 TTATTTTAGTAATACTGTTCACACATGAA
1 TT-TGTTCG----ACTGTTCACACATGAA
103010302 -TTGTTCGACTGTTCACACATGAA
1 TTTGTTCGACTGTTCACACATGAA
103010325 CTATTATATA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
23 16 0.37
24 2 0.05
25 4 0.09
27 4 0.09
28 1 0.02
29 16 0.37
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (24 bp):
TTTGTTCGACTGTTCACACATGAA
Found at i:103012548 original size:29 final size:29
Alignment explanation
Indices: 103012514--103012645 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
103012504 TACTCGATTT
** * *
103012514 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
103012543 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
103012572 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103012601 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103012630 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103012646 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103016396 original size:29 final size:29
Alignment explanation
Indices: 103016362--103016493 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
103016352 TACTCGATTT
** * *
103016362 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
103016391 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
103016420 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103016449 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103016478 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103016494 ATCTCGCTCA
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103024329 original size:29 final size:29
Alignment explanation
Indices: 103024295--103024455 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
103024285 TACTCGATTT
** * *
103024295 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
103024324 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
103024353 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103024382 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103024411 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103024440 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103024456 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103028599 original size:29 final size:29
Alignment explanation
Indices: 103028565--103028696 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
103028555 TACTCGATTT
** * *
103028565 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
103028594 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
103028623 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103028652 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103028681 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103028697 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103032990 original size:45 final size:45
Alignment explanation
Indices: 103032890--103033154 Score: 342
Period size: 45 Copynumber: 5.9 Consensus size: 45
103032880 CGAATTCATC
* *
103032890 CACCGGCATT-TAGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCT
* * * *
103032932 CACCGGCATTATAGCCAGCTAGACTCGAAGGCCTGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
*
103032977 CACCGGCATTATAGCCTGCTAGGTTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
103033022 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
* * * **
103033067 CACCGGTATCATAGCCTGCTAGGCTTTAAAGGCCAAAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGC-TCAAAGGCCCGAATAGTATCT
* *
103033113 CACCGGCATCATAGCCTGCTAGGCTTC-AAGGCCTGAATAGTA
1 CACCGGCATTATAGCCTGCTAGGC-TCAAAGGCCCGAATAGTA
103033155 CCGTACGATA
Statistics
Matches: 199, Mismatches: 19, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
42 10 0.05
43 16 0.08
44 4 0.02
45 125 0.63
46 44 0.22
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
Found at i:103033115 original size:46 final size:46
Alignment explanation
Indices: 103032859--103033154 Score: 323
Period size: 45 Copynumber: 6.7 Consensus size: 46
103032849 CACCGGTATT
* * *
103032859 TAGCCTGCTAGGTTTTAAA--CCCGAAT--TCATC-CACCGGCAT-T
1 TAGCCTGCTAGGCTTCAAAGGCCCGAATAGT-ATCTCACCGGCATCA
* * *
103032900 TAGCCTGCTAGGC-TCGAA-GCCCG-ATA-TCATTTCACCGGCATTA
1 TAGCCTGCTAGGCTTCAAAGGCCCGAATAGT-ATCTCACCGGCATCA
* * * * *
103032943 TAGCCAGCTAGAC-TCGAAGGCCTGAATAGTATCTCACCGGCATTA
1 TAGCCTGCTAGGCTTCAAAGGCCCGAATAGTATCTCACCGGCATCA
*
103032988 TAGCCTGCTAGG-TTCAAAGGCCCGAATAGTATCTCACCGGCATTA
1 TAGCCTGCTAGGCTTCAAAGGCCCGAATAGTATCTCACCGGCATCA
*
103033033 TAGCCTGCTAGGC-TCAAAGGCCCGAATAGTATCTCACCGGTATCA
1 TAGCCTGCTAGGCTTCAAAGGCCCGAATAGTATCTCACCGGCATCA
* **
103033078 TAGCCTGCTAGGCTTTAAAGGCCAAAATAGTATCTCACCGGCATCA
1 TAGCCTGCTAGGCTTCAAAGGCCCGAATAGTATCTCACCGGCATCA
*
103033124 TAGCCTGCTAGGCTTC-AAGGCCTGAATAGTA
1 TAGCCTGCTAGGCTTCAAAGGCCCGAATAGTA
103033155 CCGTACGATA
Statistics
Matches: 223, Mismatches: 22, Indels: 16
0.85 0.08 0.06
Matches are distributed among these distances:
40 5 0.02
41 20 0.09
42 9 0.04
43 16 0.07
44 4 0.02
45 125 0.56
46 44 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (46 bp):
TAGCCTGCTAGGCTTCAAAGGCCCGAATAGTATCTCACCGGCATCA
Found at i:103038049 original size:329 final size:329
Alignment explanation
Indices: 103037432--103038274 Score: 1515
Period size: 329 Copynumber: 2.6 Consensus size: 329
103037422 ATTGAAATAG
*
103037432 AATCAAAGTTCATGTATAACATTGCACATTTAAACAAATTTTCATGTGTAGTTTTGGGATTTATC
1 AATCAAAGTTCATGTATAACATTGCACATTTAACCAAA-TTTCATGTGTAGTTTTGGGATTTATC
103037497 TCTATATACAATTGATAAAGGTAATAAAGTATGCATAATAAAATTAAAATGTATAAAACACATTA
65 TCTATATACAATTGATAAAGGTAATAAAGTATGCATAATAAAATTAAAATGTATAAAACACATTA
* *
103037562 AATTAAAGTTTTGGTTGAGTGGTAAAGTTAAAATTTTATCAATCAGAATGTCATTCAAATCACAC
130 AATTAAAGTTTTGGTTGAGTGGTAAAGTTAAAGTTTTATCAATCAAAATGTCATTCAAATCACAC
103037627 CATATACAAATTACTTATTCATTTTTAAGAAAAATAAAAAGATTAAAGTACCCTAGAATAATATA
195 CATATACAAATTACTTATTCATTTTTAAGAAAAATAAAAAGATTAAAGTACCCTAGAATAATATA
*
103037692 ACTTATTTGAAATACGAAAAGACATTTTTATAATTTCTCAAATTGAAATATCCTGTATAAAGTTG
260 ACTTATTTGAAATACGAAAAGACATTTTTATAATTTCTCAAATTGAAATATCCTCTATAAAGTTG
*
103037757 TAGAA
325 TACAA
103037762 AATCAAAGTTCATGTATAACATTGCACATTTAACCAAATTTCATGTGTAGTTTTGGGATTTATCT
1 AATCAAAGTTCATGTATAACATTGCACATTTAACCAAATTTCATGTGTAGTTTTGGGATTTATCT
*
103037827 CTATATACAATTGATAAAGGTAATAAAGTATGCATAATAAAATTAAAATGTATAAAACACGTTAA
66 CTATATACAATTGATAAAGGTAATAAAGTATGCATAATAAAATTAAAATGTATAAAACACATTAA
*
103037892 ATTAAAGTTTTGGTTGAGTGGTAAAGTTAAAGTTTTATCAATCAAAATGTCATTCAAATCTCACC
131 ATTAAAGTTTTGGTTGAGTGGTAAAGTTAAAGTTTTATCAATCAAAATGTCATTCAAATCACACC
*
103037957 ATATACAAATTACTTATTCATTTTTAAGAAAAATAAAAAGATTAAAGTACCCTAGAGTAATATAA
196 ATATACAAATTACTTATTCATTTTTAAGAAAAATAAAAAGATTAAAGTACCCTAGAATAATATAA
* * * *
103038022 CTTATTTTAAATATGAAAAGGCATTTTTATAATTTCTCAAATTGAAATGTCCTCTATAAAGTTGT
261 CTTATTTGAAATACGAAAAGACATTTTTATAATTTCTCAAATTGAAATATCCTCTATAAAGTTGT
103038087 ACAA
326 ACAA
*
103038091 AATCAAAGTTCATGTATAACATTGCATATTTAACCAAATTTCATGTGTAGTTTTGGGATTTATCT
1 AATCAAAGTTCATGTATAACATTGCACATTTAACCAAATTTCATGTGTAGTTTTGGGATTTATCT
* * *
103038156 CTATATATAATTGATAAAGGTAATAAAGTGTGCATAATAAAATTAAAATGCATAAAACACATTAA
66 CTATATACAATTGATAAAGGTAATAAAGTATGCATAATAAAATTAAAATGTATAAAACACATTAA
* *
103038221 ATTAAAGTTTTGGTTGGGTGGCAAAGTTAAAGTTTTATCAATCAAAATGTCATT
131 ATTAAAGTTTTGGTTGAGTGGTAAAGTTAAAGTTTTATCAATCAAAATGTCATT
103038275 TTAAAGTTTT
Statistics
Matches: 494, Mismatches: 19, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
329 457 0.93
330 37 0.07
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (329 bp):
AATCAAAGTTCATGTATAACATTGCACATTTAACCAAATTTCATGTGTAGTTTTGGGATTTATCT
CTATATACAATTGATAAAGGTAATAAAGTATGCATAATAAAATTAAAATGTATAAAACACATTAA
ATTAAAGTTTTGGTTGAGTGGTAAAGTTAAAGTTTTATCAATCAAAATGTCATTCAAATCACACC
ATATACAAATTACTTATTCATTTTTAAGAAAAATAAAAAGATTAAAGTACCCTAGAATAATATAA
CTTATTTGAAATACGAAAAGACATTTTTATAATTTCTCAAATTGAAATATCCTCTATAAAGTTGT
ACAA
Found at i:103038287 original size:28 final size:28
Alignment explanation
Indices: 103038247--103038302 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
103038237 GGTGGCAAAG
103038247 TTAAAGTTTTATCAATCAAAATGTCATT
1 TTAAAGTTTTATCAATCAAAATGTCATT
103038275 TTAAAGTTTTATCAATCAAAATGTCATT
1 TTAAAGTTTTATCAATCAAAATGTCATT
103038303 CAAATCTCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (28 bp):
TTAAAGTTTTATCAATCAAAATGTCATT
Found at i:103040396 original size:4 final size:4
Alignment explanation
Indices: 103040389--103040416 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
103040379 AAAAAAAAAA
103040389 AAAC AAAC AAAC AAAC AAAC AAAC AAAC
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC
103040417 CTAGCTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.25, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:103042042 original size:31 final size:31
Alignment explanation
Indices: 103042005--103042273 Score: 377
Period size: 31 Copynumber: 8.7 Consensus size: 31
103041995 TGTGTACAAT
*
103042005 GTGAAAAGTGGTAACTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
103042036 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
103042067 GTGAAAAGTGGTAGTTTCGGCTACCTGGTCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
103042098 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
103042129 GTGAAAAGTGGTAGCTTCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
103042160 GTGAAAAGTGGTAGCTTCAGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
103042191 GTGAAAAGTGGTAGC-TCTAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTC-GGCTACCTGATCA
* * * *
103042222 GTGAATAGTGATAGCTTCAGCTATC-GA--A
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
103042250 TGTGAAAAG-GGATAGCTTCGGCTA
1 -GTGAAAAGTGG-TAGCTTCGGCTA
103042274 TCGAATGTGA
Statistics
Matches: 220, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
28 2 0.01
29 18 0.08
30 4 0.02
31 194 0.88
32 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:103042301 original size:29 final size:29
Alignment explanation
Indices: 103042222--103042317 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
103042212 TACCTGATCA
* * *
103042222 GTGAATAGTGATAGCTTCAGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCGAAT
103042251 GTGAAAAGGGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCGAAT
* *
103042280 GTGAAAAGGGATAGCTTTGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCGAAT
103042309 GTGAAAAGG
1 GTGAAAAGG
103042318 TTAGGTATAC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCGAAT
Found at i:103042340 original size:35 final size:32
Alignment explanation
Indices: 103042294--103042398 Score: 97
Period size: 32 Copynumber: 3.2 Consensus size: 32
103042284 AAAGGGATAG
*
103042294 CTTTG-GCTATCAAATGTGAAAAGGTTAGGTATA
1 CTTTGTGCTATCAAA--TGAAAAGGTTAGGTACA
* *
103042327 CTTTGTGCATATCACATGAAAAGGTTATGTACA
1 CTTTGTGC-TATCAAATGAAAAGGTTAGGTACA
* ** *
103042360 CTTTGTG-TGTACACTTGAAAAGGTTATGTACA
1 CTTTGTGCTAT-CAAATGAAAAGGTTAGGTACA
103042392 CTTTGTG
1 CTTTGTG
103042399 TGTACACTTG
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
31 2 0.03
32 27 0.42
33 27 0.42
34 2 0.03
35 6 0.09
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (32 bp):
CTTTGTGCTATCAAATGAAAAGGTTAGGTACA
Found at i:103042427 original size:32 final size:32
Alignment explanation
Indices: 103042310--103042468 Score: 167
Period size: 32 Copynumber: 4.9 Consensus size: 32
103042300 CTATCAAATG
** *
103042310 TGAAAAGGTTAGGTATACTTTGTGCATATCACA
1 TGAAAAGGTTAGGTATACTTTGTGTGTA-CACT
* *
103042343 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTGTACACT
* *
103042375 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTGTACACT
** *
103042407 TGAAAAGGAAAGGTATACTTTGTGTATAC-CAT
1 TGAAAAGGTTAGGTATACTTTGTGTGTACAC-T
* **
103042439 ATGAAAAAGAAAGGTATACTTTGTGTGTAC
1 -TGAAAAGGTTAGGTATACTTTGTGTGTAC
103042469 CACTCAGGAA
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
31 1 0.01
32 60 0.54
33 51 0.46
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (32 bp):
TGAAAAGGTTAGGTATACTTTGTGTGTACACT
Found at i:103045233 original size:17 final size:17
Alignment explanation
Indices: 103045213--103045308 Score: 75
Period size: 17 Copynumber: 5.3 Consensus size: 17
103045203 TTCAAGACTC
103045213 ATGTAATGTTTTTAATT
1 ATGTAATGTTTTTAATT
* **
103045230 ATGTAGTGATTCATAGATTT
1 ATGTAATG-TTTTTA-A-TT
103045250 ATGTAATGTTTTTAATT
1 ATGTAATGTTTTTAATT
* **
103045267 ATGTAGTGATTCATAGACTT
1 ATGTAATG-TTTTTA-A-TT
*
103045287 ATGTAATATTTTTAATT
1 ATGTAATGTTTTTAATT
103045304 ATGTA
1 ATGTA
103045309 GTGATTCAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
17 23 0.38
18 10 0.17
19 10 0.17
20 17 0.28
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (17 bp):
ATGTAATGTTTTTAATT
Found at i:103045253 original size:20 final size:18
Alignment explanation
Indices: 103045225--103045316 Score: 80
Period size: 17 Copynumber: 5.0 Consensus size: 18
103045215 GTAATGTTTT
103045225 TAATTATGTAGTGATTCA
1 TAATTATGTAGTGATTCA
* **
103045243 TAGATTTATGTAATG-TTTT
1 TA-A-TTATGTAGTGATTCA
103045262 TAATTATGTAGTGATTCA
1 TAATTATGTAGTGATTCA
* **
103045280 TAGACTTATGTAAT-ATTTT
1 TA-A-TTATGTAGTGATTCA
103045299 TAATTATGTAGTGATTCA
1 TAATTATGTAGTGATTCA
103045317 AAGACTTACA
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
17 17 0.30
18 11 0.20
19 11 0.20
20 17 0.30
ACGTcount: A:0.32, C:0.04, G:0.15, T:0.49
Consensus pattern (18 bp):
TAATTATGTAGTGATTCA
Found at i:103045254 original size:37 final size:37
Alignment explanation
Indices: 103045203--103045353 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
103045193 ATGTGTTAAT
*
103045203 TTCA-AGACTCATGTAATGTTTTTAATTATGTAGTGA
1 TTCATAGACTTATGTAATGTTTTTAATTATGTAGTGA
*
103045239 TTCATAGATTTATGTAATGTTTTTAATTATGTAGTGA
1 TTCATAGACTTATGTAATGTTTTTAATTATGTAGTGA
*
103045276 TTCATAGACTTATGTAATATTTTTAATTATGTAGTGA
1 TTCATAGACTTATGTAATGTTTTTAATTATGTAGTGA
* **
103045313 TTCAAAGACTTACATAATGTTTTTAATTATGTAGTGA
1 TTCATAGACTTATGTAATGTTTTTAATTATGTAGTGA
103045350 TTCA
1 TTCA
103045354 ATTCGGGTAA
Statistics
Matches: 106, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
36 4 0.04
37 102 0.96
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.47
Consensus pattern (37 bp):
TTCATAGACTTATGTAATGTTTTTAATTATGTAGTGA
Found at i:103045371 original size:9 final size:8
Alignment explanation
Indices: 103045353--103045426 Score: 60
Period size: 9 Copynumber: 8.5 Consensus size: 8
103045343 GTAGTGATTC
103045353 AATTCGGGT
1 AATTC-GGT
103045362 AATTCAGGT
1 AATTC-GGT
103045371 AATTCGGT
1 AATTCGGT
103045379 AA-TCGGTT
1 AATTCGG-T
*
103045387 AATTCAGTT
1 AATTC-GGT
103045396 AATTCGAGT
1 AATTCG-GT
*
103045405 AATTCGTTT
1 AATTCG-GT
103045414 AATTCGGTT
1 AATTCGG-T
103045423 AATT
1 AATT
103045427 TTTAACCAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
7 4 0.07
8 9 0.17
9 40 0.74
10 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (8 bp):
AATTCGGT
Found at i:103045384 original size:25 final size:26
Alignment explanation
Indices: 103045356--103045407 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
103045346 GTGATTCAAT
103045356 TCGGGTAATTCAGGTAATTCG-GTAA
1 TCGGGTAATTCAGGTAATTCGAGTAA
* *
103045381 TCGGTTAATTCAGTTAATTCGAGTAA
1 TCGGGTAATTCAGGTAATTCGAGTAA
103045407 T
1 T
103045408 TCGTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.37
Consensus pattern (26 bp):
TCGGGTAATTCAGGTAATTCGAGTAA
Found at i:103056141 original size:42 final size:42
Alignment explanation
Indices: 103056082--103056208 Score: 157
Period size: 42 Copynumber: 3.0 Consensus size: 42
103056072 TTAGGGTTAC
*
103056082 TGAGATTACGTGTAAGACCATATCTGGGATATGGTATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
103056124 TGAGACTT-CGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * * *
103056167 CGAGATTACATGTAAGACCATATCTGGGATATGACATTGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
103056209 CAGTACTGTG
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 36 0.51
43 35 0.49
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:103064770 original size:40 final size:41
Alignment explanation
Indices: 103064697--103064911 Score: 134
Period size: 40 Copynumber: 5.4 Consensus size: 41
103064687 GATATCCGGG
* *
103064697 CTAAG-CCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGA
1 CTAAGACCCGAAGGCATTTGTGCGAGGTGACTATAACCAGA
* * * * * *
103064737 CTAAGATCCGAAGGCATTCGTGCGAGTTG-CTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGGTGACTATAACCAGA
* * * * * ** *
103064777 CTAAGACCCAAAGGCATTTGTGCTA-GCGATTATATCTGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGGTGACTATAACCAGA
* * * * *
103064817 CTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGGTGACTATAACCAGA
* * * * * * * *
103064857 CTAAGTCCCGAAGGTATCTGTGCTA-GTGACCATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGGTGACTATAACCAGA
103064897 CTAAGACCCGAAGGC
1 CTAAGACCCGAAGGC
103064912 CTTGTGCAAG
Statistics
Matches: 147, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 128 0.87
41 18 0.12
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
CTAAGACCCGAAGGCATTTGTGCGAGGTGACTATAACCAGA
Found at i:103064821 original size:80 final size:78
Alignment explanation
Indices: 103064688--103064938 Score: 272
Period size: 80 Copynumber: 3.2 Consensus size: 78
103064678 TATTCGAATG
* * * * *
103064688 ATATCCGGGCTAAGCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
103064753 TTCGTGCGAGTTGCT
65 TT-GTGCAAGTAGCT
* * * *
103064768 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
103064833 TTTGTGCTAG-CGACT
65 -TTGTGCAAGTAG-CT
* * * *
103064848 ATATCCGGGCTAAGTCCCGAAGGTATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
103064913 TTGTGCAAGTAGTT
65 TTGTGCAAGTAGCT
103064927 ATATCC-GGCTAA
1 ATATCCGGGCTAA
103064939 ATCTCGAAGA
Statistics
Matches: 144, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
78 6 0.04
79 16 0.11
80 103 0.72
81 19 0.13
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAT
TGTGCAAGTAGCT
Found at i:103064901 original size:120 final size:120
Alignment explanation
Indices: 103064688--103064911 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 120
103064678 TATTCGAATG
* *
103064688 ATATCCGGGCTAAGCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGCA
*
103064753 TTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
66 TTCGTGCGAGTTGCCATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
* * * *
103064808 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGAT-CCGAAGG
* * *
103064871 TA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
64 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCAAAGGC
103064912 CTTGTGCAAG
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
119 5 0.06
120 67 0.74
121 18 0.20
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGCA
TTCGTGCGAGTTGCCATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
Found at i:103066374 original size:16 final size:16
Alignment explanation
Indices: 103066339--103066377 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
103066329 GTAGATCGGC
*
103066339 AAAAGCCAAAATACCG
1 AAAAGCCAAAATACCA
**
103066355 AAAAGCCAAAATGTCA
1 AAAAGCCAAAATACCA
103066371 AAAAGCC
1 AAAAGCC
103066378 GAAAGTTTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.23, G:0.13, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATACCA
Found at i:103068600 original size:26 final size:26
Alignment explanation
Indices: 103068571--103068624 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
103068561 TTCTCTCTCA
103068571 AGCCATATAACAGGG-AGCTCACAAAG
1 AGCCAT-TAACAGGGAAGCTCACAAAG
**
103068597 AGCCATTAATTGGGAAGCTCACAAAG
1 AGCCATTAACAGGGAAGCTCACAAAG
103068623 AG
1 AG
103068625 TCTATCAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (26 bp):
AGCCATTAACAGGGAAGCTCACAAAG
Found at i:103070736 original size:40 final size:40
Alignment explanation
Indices: 103070689--103070913 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
103070679 CTTGCACAAG
* * * *
103070689 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
103070729 GCTTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
103070769 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
103070809 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCT-AGCACAAAT
* * * * *
103070849 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCTAGCACAAAT
*
103070890 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
103070914 CATTCGAATA
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 126 0.80
41 30 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:103070824 original size:120 final size:121
Alignment explanation
Indices: 103070689--103070913 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 121
103070679 CTTGCACAAG
* * * *
103070689 GCCTTCGGGTCTTAGCCCGGATGTGGTC-ACT-AGCATAAATGCTTTCGGGA-CTTAGCCCGGAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACAAATGCCTTC-GGATCTTAGCCCGGAT
* * **
103070751 ATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
63 ATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
* * *
103070809 GCCTTCGGGTCTTAGCCCGGATATAGCAACTCACACGAATGCCTTCGGATCTTAGTCCGGTTATA
1 GCCTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGATCTTAGCCCGGATATA
103070874 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
103070914 CATTCGAATA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
119 4 0.04
120 53 0.59
121 33 0.37
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (121 bp):
GCCTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
Found at i:103089200 original size:17 final size:18
Alignment explanation
Indices: 103089167--103089200 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
103089157 ATCATGTAAA
*
103089167 ATGCAGTATTAATCAATC
1 ATGCAGTATTAACCAATC
103089185 ATGCAGT-TTAACCAAT
1 ATGCAGTATTAACCAAT
103089201 TTAAACCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (18 bp):
ATGCAGTATTAACCAATC
Found at i:103092639 original size:12 final size:12
Alignment explanation
Indices: 103092622--103092646 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103092612 ATGTAAGTGA
103092622 TCTTGATGATTT
1 TCTTGATGATTT
103092634 TCTTGATGATTT
1 TCTTGATGATTT
103092646 T
1 T
103092647 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:103093434 original size:47 final size:46
Alignment explanation
Indices: 103093361--103093680 Score: 249
Period size: 47 Copynumber: 6.8 Consensus size: 46
103093351 GATTACTTAT
* * *
103093361 GTGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
* * * *
103093407 GTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACGTAGA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATGATGA
* *
103093455 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGA
* * ** *
103093502 -TAGCCAGTGTAAGACGTGTCTAGGACATGCATCGG-CTGA-GA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATG-A
* * * * *
103093546 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATGTATAAAAGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA--CAT-GATGA
* * * *
103093594 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATGATGA
103093643 -TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
103093681 AACTTATCCC
Statistics
Matches: 222, Mismatches: 34, Indels: 33
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.00
44 32 0.14
45 2 0.01
46 25 0.11
47 62 0.28
48 38 0.17
49 54 0.24
50 7 0.03
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
Found at i:103093527 original size:94 final size:93
Alignment explanation
Indices: 103093361--103093680 Score: 321
Period size: 94 Copynumber: 3.4 Consensus size: 93
103093351 GATTACTTAT
* * * **
103093361 GTGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATGAGT-GCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAAATGA-TAGCCAGTGTAAGACCA
*
103093424 TGTCTAGGACATGGCATCGACGTAGAGATGA
65 TGTCTAGGACATGGCATCGGC-T-GAGATGA
** *
103093455 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAGCCAGTGTAAGA-CGT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAAATGATAGCCAGTGTAAGACCAT
*
103093519 GTCTAGGACAT-GCATCGGCTGAGA-GTT
66 GTCTAGGACATGGCATCGGCTGAGATG-A
* * * * * *
103093546 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-GTATAAAAGAGAGCTAGTGTAAGACC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-A-AAATGATAGCCAGTGTAAGACC
* *
103093610 ATGTCTGGGACATGGCATTGGCCTCGATGATGA
64 ATGTCTAGGACATGGCATCGG-CT-GA-GATGA
103093643 -TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
103093681 AACTTATCCC
Statistics
Matches: 190, Mismatches: 22, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
90 2 0.01
91 40 0.21
92 16 0.08
93 19 0.10
94 56 0.29
95 19 0.10
96 3 0.02
97 13 0.07
98 15 0.08
99 7 0.04
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (93 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAAATGATAGCCAGTGTAAGACCAT
GTCTAGGACATGGCATCGGCTGAGATGA
Found at i:103093619 original size:49 final size:49
Alignment explanation
Indices: 103093548--103093677 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
103093538 TGAGAGTTGT
103093548 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCAT-GTATAAAAGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCG-AT-AAAGAGA
** * * * *
103093596 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATAAAGAGA
*
103093645 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
103093678 GGCAACTTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
48 12 0.17
49 49 0.69
50 9 0.13
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATAAAGAGA
Found at i:103099419 original size:28 final size:28
Alignment explanation
Indices: 103099358--103099430 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
103099348 TATGGTACTC
* * *
103099358 AGTGTACGAAATATTGAGAATGGCACTT
1 AGTGTGCGAAATATTGAGAATGACACAT
* * *
103099386 AATGTGCGAGATATTGATAATGACACAT
1 AGTGTGCGAAATATTGAGAATGACACAT
**
103099414 AGTGTGAAAAATATTGA
1 AGTGTGCGAAATATTGA
103099431 ATGATTAAAT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACAT
Found at i:103099547 original size:39 final size:39
Alignment explanation
Indices: 103099503--103099700 Score: 260
Period size: 39 Copynumber: 5.1 Consensus size: 39
103099493 AGCTTTATAA
*
103099503 TGGTGTTATATCTGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
103099542 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
103099581 TGGTGTTATATCCGGGCTAAG-CCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCC-GAAGGCATTCGTGC
* *
103099620 TGGTGTTATATCCGGGCTGAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
** * * *
103099659 TGGAATTGTATCCGGACTTAAGGT-CCGCAGGC-TTCGTGC
1 TGGTGTTATATCCGGGC-TAA-GTCCCGAAGGCATTCGTGC
103099698 TGG
1 TGG
103099701 AATTGTTTCT
Statistics
Matches: 146, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
38 3 0.02
39 129 0.88
40 11 0.08
41 3 0.02
ACGTcount: A:0.17, C:0.22, G:0.32, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Done.