Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 329 of 438
Found at i:103099701 original size:39 final size:39
Alignment explanation
Indices: 103099608--103099757 Score: 176
Period size: 39 Copynumber: 3.8 Consensus size: 39
103099598 TAAGCCCTGA
** * * *
103099608 AGGCATTCGTGCTGGTGTTATATCCGGGCTGAA-GTCCCGC
1 AGGC-TTCGTGCTGGAATTGTATCCGGACTTAAGGT-CCGC
*
103099648 AGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGC
* *
103099687 AGGCTTCGTGCTGGAATTGTTTCTGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGC
* * *
103099726 AAGCTTCATGCTGGAATTGTATCCGGGCTTAA
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAA
103099758 AGTGTAACAC
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 89 0.94
40 6 0.06
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (39 bp):
AGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGC
Found at i:103102615 original size:78 final size:81
Alignment explanation
Indices: 103102495--103102676 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
103102485 TACTCGTTCA
* *
103102495 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
103102558 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
103102574 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
103102637 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
103102653 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
103102677 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:103102676 original size:40 final size:40
Alignment explanation
Indices: 103102493--103102676 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
103102483 GCTACTCGTT
*
103102493 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
103102533 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
103102573 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
103102611 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
103102652 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103102677 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:103110629 original size:78 final size:81
Alignment explanation
Indices: 103110509--103110690 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
103110499 TACTCGTTCA
* *
103110509 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
103110572 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
103110588 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
103110651 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
103110667 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
103110691 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:103110690 original size:40 final size:40
Alignment explanation
Indices: 103110507--103110690 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
103110497 GCTACTCGTT
*
103110507 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
103110547 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
103110587 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
103110625 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
103110666 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103110691 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:103118760 original size:28 final size:28
Alignment explanation
Indices: 103118699--103118763 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
103118689 TCAGTGTACG
* **
103118699 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGAA
* *
103118727 AGATATTGAGAATGACACTTAGTGTGAA
1 AAATATTGAGAATGACACTTAATGTGAA
103118755 AAATATTGA
1 AAATATTGA
103118764 ATGATTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGAA
Found at i:103118880 original size:39 final size:39
Alignment explanation
Indices: 103118836--103118989 Score: 212
Period size: 39 Copynumber: 4.1 Consensus size: 39
103118826 GGCTTTATAA
*
103118836 TGGTGTTATATCTGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
103118875 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
103118914 TGGTGTTATATCCGGGC-----CCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
103118948 TGGTGTTATATCCAGGCTGAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
103118987 TGG
1 TGG
103118990 AATTGTATCT
Statistics
Matches: 103, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
34 32 0.31
39 64 0.62
40 7 0.07
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:103119015 original size:39 final size:39
Alignment explanation
Indices: 103118972--103119076 Score: 192
Period size: 39 Copynumber: 2.7 Consensus size: 39
103118962 GGCTGAAGTC
*
103118972 CCGCAGGCTTTGTGCTGGAATTGTATCTGGACTTAAGGT
1 CCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGT
103119011 CCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGT
1 CCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGT
*
103119050 CCGCAAGCTTCGTGCTGGAATTGTATC
1 CCGCAGGCTTCGTGCTGGAATTGTATC
103119077 CGGGCATAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (39 bp):
CCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGT
Found at i:103119106 original size:40 final size:39
Alignment explanation
Indices: 103118936--103119139 Score: 160
Period size: 39 Copynumber: 5.2 Consensus size: 39
103118926 CGGGCCCTGA
** * * *
103118936 AGGCATTCGTGCTGGTGTTATATCCAGG-CTGAAGTCCCGC
1 AGGC-TTCGTGCTGGAATTGTATCC-GGACTAAAGACCCGC
* * * **
103118976 AGGCTTTGTGCTGGAATTGTATCTGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTAAAGACCCGC
* * **
103119015 AGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTAAAGACCCGC
* *
103119054 AAGCTTCGTGCTGGAATTGTATCCGGGCATAAAGACCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGAC-TAAAGACCCGC
* * * * *
103119094 AGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCTGT
1 AGGCT-TCGTGCTGGAATTGTATCCGGAC-TAAAGACCCGC
103119134 AGGCTT
1 AGGCTT
103119140 TGTGTTGGTG
Statistics
Matches: 140, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
38 2 0.01
39 88 0.63
40 49 0.35
41 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (39 bp):
AGGCTTCGTGCTGGAATTGTATCCGGACTAAAGACCCGC
Found at i:103119125 original size:79 final size:78
Alignment explanation
Indices: 103118953--103119125 Score: 188
Period size: 78 Copynumber: 2.2 Consensus size: 78
103118943 CGTGCTGGTG
* * * * * * **
103118953 TTATATCCAGGCTGAAGTCCCGCAGGCTTTGTGCTGGAATTGTATCTGGACTTAAGGTCCGCAGG
1 TTATATCCGGGCTTAAGTCCCGCAAGCTTCGTGCTGGAATTGTATCCGGACTAAAGACCCGCAGG
*
103119018 CTTCGTGCTGGAA
66 CTTCATGCTGGAA
* * * *
103119031 TTGTATCTGGACTTAAGGT-CCGCAAGCTTCGTGCTGGAATTGTATCCGGGCATAAAGACCCGCA
1 TTATATCCGGGCTTAA-GTCCCGCAAGCTTCGTGCTGGAATTGTATCCGGAC-TAAAGACCCGCA
103119095 GGCTAT-ATGCTGGAA
64 GGCT-TCATGCTGGAA
103119110 TTATATCCGGGCTTAA
1 TTATATCCGGGCTTAA
103119126 AGACCTGTAG
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
78 39 0.51
79 36 0.47
80 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (78 bp):
TTATATCCGGGCTTAAGTCCCGCAAGCTTCGTGCTGGAATTGTATCCGGACTAAAGACCCGCAGG
CTTCATGCTGGAA
Found at i:103127051 original size:39 final size:39
Alignment explanation
Indices: 103126997--103127073 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
103126987 AATATATGAA
*
103126997 CTTGTAATTAAATATCATATTAAATTATATTCATCCTAG
1 CTTGTAATTAAATATCATATAAAATTATATTCATCCTAG
103127036 CTTGTAATTAAATATCATATAAAATTATATTCATCCTA
1 CTTGTAATTAAATATCATATAAAATTATATTCATCCTA
103127074 ACAATTAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.43
Consensus pattern (39 bp):
CTTGTAATTAAATATCATATAAAATTATATTCATCCTAG
Found at i:103129504 original size:24 final size:23
Alignment explanation
Indices: 103129453--103129506 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
103129443 ATCTATAACG
* *
103129453 ATTAA-TTTTTATTACTTTTATT
1 ATTAATTTTTTATTACATTAATT
103129475 ATTTAATTTTTTATTACAATTAATT
1 A-TTAATTTTTTATTAC-ATTAATT
103129500 ATTAATT
1 ATTAATT
103129507 CGACAAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 4 0.15
24 16 0.59
25 6 0.22
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (23 bp):
ATTAATTTTTTATTACATTAATT
Found at i:103129680 original size:28 final size:28
Alignment explanation
Indices: 103129640--103129695 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
103129630 GATTTTAGGG
103129640 TTGATACACTTTTACCTTAATTAACTAT
1 TTGATACACTTTTACCTTAATTAACTAT
103129668 TTGATACACTTTTACCTTAATTAACTAT
1 TTGATACACTTTTACCTTAATTAACTAT
103129696 CCAATTAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.04, T:0.46
Consensus pattern (28 bp):
TTGATACACTTTTACCTTAATTAACTAT
Found at i:103130117 original size:20 final size:21
Alignment explanation
Indices: 103130087--103130125 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
103130077 AAAAAGTATT
*
103130087 ATAATTAATTATATGTATTAA
1 ATAATTAATTATATATATTAA
103130108 ATAA-TAATTATATATATT
1 ATAATTAATTATATATATT
103130126 TATATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (21 bp):
ATAATTAATTATATATATTAA
Found at i:103130421 original size:17 final size:17
Alignment explanation
Indices: 103130399--103130432 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
103130389 ATTATATTTT
*
103130399 TAAAAAATATTTTAAAA
1 TAAAAAATAATTTAAAA
*
103130416 TAAAAATTAATTTAAAA
1 TAAAAAATAATTTAAAA
103130433 AAATTAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAAAATAATTTAAAA
Found at i:103151249 original size:39 final size:39
Alignment explanation
Indices: 103151205--103151284 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
103151195 TTTGAGGGAC
103151205 TAAAATGTGAAATAAATGAAATGTGTGGACTAGTATGAG
1 TAAAATGTGAAATAAATGAAATGTGTGGACTAGTATGAG
103151244 TAAAATGTGAAATAAATGAAATGTGTGGACTAGTATGAG
1 TAAAATGTGAAATAAATGAAATGTGTGGACTAGTATGAG
103151283 TA
1 TA
103151285 CTAGAAGAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.44, C:0.03, G:0.25, T:0.29
Consensus pattern (39 bp):
TAAAATGTGAAATAAATGAAATGTGTGGACTAGTATGAG
Found at i:103151713 original size:29 final size:30
Alignment explanation
Indices: 103151660--103151717 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
103151650 CAGAAGTTTT
103151660 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCGATTTAAACTAGCTTG
103151690 GGCACTAAGTGTGCGATTT-AACTAGCTT
1 GGCACTAAGTGTGCGATTTAAACTAGCTT
103151718 CGGCTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (30 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTG
Found at i:103157445 original size:39 final size:39
Alignment explanation
Indices: 103157353--103157503 Score: 178
Period size: 39 Copynumber: 3.8 Consensus size: 39
103157343 CTACGGGTCT
* * * * *
103157353 TTAAGCCCGGATATAATTCCAGCA-TATAGCCTGCAGGTCT
1 TTAAGTCCGGATACAATTCCAGCACGA-AGCCTGC-GGACC
* *
103157393 TTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACC
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
*
103157432 TTAAGTCCAGATACAATTCCAGCACGAAGCCTGCGGACC
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
** *
103157471 TTAAGTCCGGATAGTATTCCAGCACAAAGCCTG
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTG
103157504 GGGGACTTCA
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 68 0.69
40 29 0.30
41 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (39 bp):
TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
Found at i:103157520 original size:39 final size:39
Alignment explanation
Indices: 103157335--103157522 Score: 155
Period size: 39 Copynumber: 4.8 Consensus size: 39
103157325 CAATCACCAA
* * *
103157335 CACAAAGCCTACGGGTCTTTAAGCCCGGATA-TAATTCCAG
1 CACAAAGCCTGC-GGACCTTAAGCCCGGATAGT-ATTCCAG
* * * * **
103157375 CATATAGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAG
1 CACAAAGCCTGC-GGACCTTAAGCCCGGATAGTATTCCAG
* * * * **
103157415 CACGAAGCTTGCGGACCTTAAGTCCAGATACAATTCCAG
1 CACAAAGCCTGCGGACCTTAAGCCCGGATAGTATTCCAG
* *
103157454 CACGAAGCCTGCGGACCTTAAGTCCGGATAGTATTCCAG
1 CACAAAGCCTGCGGACCTTAAGCCCGGATAGTATTCCAG
* *
103157493 CACAAAGCCTGGGGGA-CTTCAGCCCGGATA
1 CACAAAGCCT-GCGGACCTTAAGCCCGGATA
103157523 TAACACCAGC
Statistics
Matches: 125, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 79 0.63
40 46 0.37
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
CACAAAGCCTGCGGACCTTAAGCCCGGATAGTATTCCAG
Found at i:103157532 original size:39 final size:39
Alignment explanation
Indices: 103157450--103157657 Score: 165
Period size: 39 Copynumber: 5.1 Consensus size: 39
103157440 AGATACAATT
* **
103157450 CCAGCACG-AAGCCTGC-GGACCTTAAGTCCGGATAGT-ATT
1 CCAGCACGAAAGCCTGCGGGA-CTT-AGCCCGGATA-TAACA
*
103157489 CCAGCAC-AAAGCCTGGGGGACTTCAGCCCGGATATAACA
1 CCAGCACGAAAGCCTGCGGGACTT-AGCCCGGATATAACA
* *
103157528 CCAGCACGAATGCCTTCAGGGCTTAGCCCGGCTTAGCCCGGATATAACA
1 CCAGCACGAAAGCCTGC-GGG---A------CTTAGCCCGGATATAACA
* *
103157577 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAACA
*
103157616 CCAGCAC-AAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAAA-GCCTGCGGGACTTAGCCCGGATATAACA
103157655 CCA
1 CCA
103157658 TTATAAAGCC
Statistics
Matches: 145, Mismatches: 9, Indels: 30
0.79 0.05 0.16
Matches are distributed among these distances:
38 3 0.02
39 90 0.62
40 9 0.06
41 3 0.02
44 1 0.01
45 1 0.01
48 3 0.02
49 32 0.22
50 3 0.02
ACGTcount: A:0.28, C:0.31, G:0.24, T:0.17
Consensus pattern (39 bp):
CCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAACA
Found at i:103157585 original size:49 final size:49
Alignment explanation
Indices: 103157513--103157607 Score: 174
Period size: 49 Copynumber: 1.9 Consensus size: 49
103157503 GGGGGACTTC
103157513 AGCCCGGATATAACACCAGCACGAATGCCTTCAGGG-CTTAGCCCGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGGACTTAGCCCGGCTT
103157562 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
103157608 ATATAACACC
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 3 0.07
49 42 0.93
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (49 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGCTT
Found at i:103157763 original size:28 final size:28
Alignment explanation
Indices: 103157730--103157802 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
103157720 ATTTAATCAT
** *
103157730 TCAATATTTTTCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
103157758 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
*
103157786 TCAATATTTCGTACACT
1 TCAATATTTCGCACACT
103157803 GAGTATCATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:103159259 original size:39 final size:39
Alignment explanation
Indices: 103159192--103159414 Score: 322
Period size: 39 Copynumber: 5.7 Consensus size: 39
103159182 ACAAAGCATG
* * *
103159192 CGGGACTTTGAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
103159232 CAGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
103159272 CGGGGCTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
103159311 CGGGACTTAGCTCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
103159350 CAGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
103159389 CGGGATTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
103159415 TTATAAAGTC
Statistics
Matches: 167, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 149 0.89
40 18 0.11
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:103163055 original size:29 final size:29
Alignment explanation
Indices: 103163016--103163094 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
103163006 CTTAATAATC
*
103163016 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
103163046 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
103163075 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
103163095 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:103163565 original size:2 final size:2
Alignment explanation
Indices: 103163560--103163589 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
103163550 TCACACATGC
103163560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103163590 GTCCGAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103165438 original size:48 final size:48
Alignment explanation
Indices: 103165384--103165486 Score: 188
Period size: 48 Copynumber: 2.1 Consensus size: 48
103165374 ACAACATTCC
103165384 AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
1 AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
* *
103165432 AAAATGCATTCCATCCTATACATGCCATAGTTCCAAAATGTAACTTAC
1 AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
103165480 AAAATGC
1 AAAATGC
103165487 CGAAGACGGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (48 bp):
AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
Found at i:103169726 original size:40 final size:40
Alignment explanation
Indices: 103169660--103169826 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
103169650 AAATTGAATG
* *
103169660 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
* * * ***
103169699 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
*
103169739 ATATCCGGGCTAAGACCCGAAGGC-ATTAGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTA-TGCTG-GTAATT
* * * ** *
103169779 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
103169819 ATATCCGG
1 ATATCCGG
103169827 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
Found at i:103169793 original size:80 final size:79
Alignment explanation
Indices: 103169660--103169810 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
103169650 AAATTGAATG
* *
103169660 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTAAATCCGGGCTAAGACCCGAAGGCAA
103169725 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* **
103169739 ATATCCGGGCTAAGACCCGAAGGC-ATTAGTGC-GAGTTATTAAATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATTA-TGCTG-GAAATTAAATCCGGGCTAAGACCCGAAGG
*
103169802 CATTTGTGC
63 CAATTGTGC
103169811 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 19 0.30
80 44 0.70
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:103172688 original size:13 final size:13
Alignment explanation
Indices: 103172670--103172696 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
103172660 GCTCAGCAGG
103172670 GACACGCCCGTGT
1 GACACGCCCGTGT
103172683 GACACGCCCGTGT
1 GACACGCCCGTGT
103172696 G
1 G
103172697 CGGTTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:103187934 original size:49 final size:49
Alignment explanation
Indices: 103187872--103187969 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
103187862 TTATGAATGC
*
103187872 TTGATGATTGCATTTGTTACTAGTATGAAATATCATATAAATGCATATT
1 TTGATGATTGCATTTGTTACTAGTATGAAATATCATAGAAATGCATATT
* *
103187921 TTGATGATTGCATTTGTTACTGGTATGAAATATTATAGAAATGCATATT
1 TTGATGATTGCATTTGTTACTAGTATGAAATATCATAGAAATGCATATT
103187970 GATGATAACA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (49 bp):
TTGATGATTGCATTTGTTACTAGTATGAAATATCATAGAAATGCATATT
Found at i:103191207 original size:29 final size:29
Alignment explanation
Indices: 103191174--103191243 Score: 140
Period size: 29 Copynumber: 2.4 Consensus size: 29
103191164 ACGAGATTGA
103191174 CACTAAGTGTGCATGCTGGAAATATATGG
1 CACTAAGTGTGCATGCTGGAAATATATGG
103191203 CACTAAGTGTGCATGCTGGAAATATATGG
1 CACTAAGTGTGCATGCTGGAAATATATGG
103191232 CACTAAGTGTGC
1 CACTAAGTGTGC
103191244 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (29 bp):
CACTAAGTGTGCATGCTGGAAATATATGG
Found at i:103191259 original size:29 final size:29
Alignment explanation
Indices: 103191174--103191303 Score: 95
Period size: 29 Copynumber: 4.5 Consensus size: 29
103191164 ACGAGATTGA
* **
103191174 CACTAAGTGTGC-ATGCTGGAAATATATGG
1 CACTAAGTGTGCGA-GCTCGAAACGTATGG
* **
103191203 CACTAAGTGTGC-ATGCTGGAAATATATGG
1 CACTAAGTGTGCGA-GCTCGAAACGTATGG
**
103191232 CACTAAGTGTGCGAGCTCGAAGGGTATGG
1 CACTAAGTGTGCGAGCTCGAAACGTATGG
** * * *
103191261 CACTGTGTGTGCGGGCT-TAAATCGCATGG
1 CACTAAGTGTGCGAGCTCGAAA-CGTATGG
103191290 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
103191304 AATCGAGTAT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
28 2 0.02
29 82 0.96
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
CACTAAGTGTGCGAGCTCGAAACGTATGG
Found at i:103201128 original size:23 final size:23
Alignment explanation
Indices: 103201082--103201126 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
103201072 TTAATTAATT
*
103201082 AAAAATTAAACAAGTATAAAAAC
1 AAAAATTAAACAAATATAAAAAC
*
103201105 AAAAATTAAAAGAAATATAAAA
1 AAAAATT-AAACAAATATAAAA
103201127 CATTTGTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (23 bp):
AAAAATTAAACAAATATAAAAAC
Found at i:103202752 original size:2 final size:2
Alignment explanation
Indices: 103202745--103202782 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
103202735 ATTGAACCTG
103202745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103202783 CTATGATCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103212812 original size:33 final size:34
Alignment explanation
Indices: 103212769--103212843 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 34
103212759 AGTGATAGTC
*
103212769 CAGTAACAGTGT-GGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
*
103212802 CAGTATCAGTGTGGGCCTTAGCCCATTATAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
*
103212836 CAATATCA
1 CAGTATCA
103212844 TAAATGCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 11 0.29
34 27 0.71
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:103213299 original size:17 final size:19
Alignment explanation
Indices: 103213263--103213299 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
103213253 AAAGCCCACA
103213263 ACACGACCCATGTGGGCCC
1 ACACGACCCATGTGGGCCC
*
103213282 ACAC-ACCCGTGT-GGCCC
1 ACACGACCCATGTGGGCCC
103213299 A
1 A
103213300 ATAAGCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.22, C:0.43, G:0.24, T:0.11
Consensus pattern (19 bp):
ACACGACCCATGTGGGCCC
Found at i:103220055 original size:29 final size:28
Alignment explanation
Indices: 103220000--103220083 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
103219990 CCTGTATCTA
* *
103220000 GCCCATTAAGCCCAATCATATTCATATG
1 GCCCATTAGGCCCAATCACATTCATATG
*
103220028 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATG
*
103220057 GCCCGTTAGGCCCAATCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
103220084 TCATGCTTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATG
Found at i:103223222 original size:29 final size:29
Alignment explanation
Indices: 103223156--103223257 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 29
103223146 TACCTGTATT
*
103223156 TGGCCCATTAAGCCC--A-ACCATATTCATA
1 TGGCCCATTAGGCCCAAATACCAT-TT-ATA
*
103223184 TGGCCTATTAGGCCCAAAT--CACTTGTATA
1 TGGCCCATTAGGCCCAAATACCA-TT-TATA
*
103223213 TGGCCCATTAGGCCCAAATACCATTTATG
1 TGGCCCATTAGGCCCAAATACCATTTATA
*
103223242 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
103223258 GTCATATTCA
Statistics
Matches: 62, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
28 13 0.21
29 42 0.68
30 5 0.08
31 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATACCATTTATA
Found at i:103224753 original size:16 final size:16
Alignment explanation
Indices: 103224732--103224769 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
103224722 GAAAAATTTA
103224732 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
103224748 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
*
103224764 GGATTT
1 AGATTT
103224770 TGGGAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (16 bp):
AGATTTCGAGATTTTT
Found at i:103225131 original size:71 final size:71
Alignment explanation
Indices: 103225047--103225195 Score: 280
Period size: 71 Copynumber: 2.1 Consensus size: 71
103225037 CCACCCCTAG
*
103225047 CCTGATCACGGCCTCTCGAGGGTAGCTGACCACCCCTCGGTGGCTGTACACCACTCGGTCCACGA
1 CCTGATCACGGCCTCTCGACGGTAGCTGACCACCCCTCGGTGGCTGTACACCACTCGGTCCACGA
*
103225112 CTAGTA
66 CTAGCA
103225118 CCTGATCACGGCCTCTCGACGGTAGCTGACCACCCCTCGGTGGCTGTACACCACTCGGTCCACGA
1 CCTGATCACGGCCTCTCGACGGTAGCTGACCACCCCTCGGTGGCTGTACACCACTCGGTCCACGA
103225183 CTAGCA
66 CTAGCA
103225189 CCTGATC
1 CCTGATC
103225196 TGACATTTTA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 76 1.00
ACGTcount: A:0.18, C:0.38, G:0.24, T:0.19
Consensus pattern (71 bp):
CCTGATCACGGCCTCTCGACGGTAGCTGACCACCCCTCGGTGGCTGTACACCACTCGGTCCACGA
CTAGCA
Found at i:103227744 original size:29 final size:29
Alignment explanation
Indices: 103227712--103227793 Score: 112
Period size: 29 Copynumber: 2.9 Consensus size: 29
103227702 AAATTCACGT
* *
103227712 ACCTGTATCTGGCCCATTAGGCCCAAATC
1 ACCTTTATATGGCCCATTAGGCCCAAATC
*
103227741 ACCTTTATATGGCCCATTAGGCACAAATC
1 ACCTTTATATGGCCCATTAGGCCCAAATC
* *
103227770 ACATTTATAT-GCCCGTTAGGCCCA
1 ACCTTTATATGGCCCATTAGGCCCA
103227794 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 12 0.26
29 35 0.74
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
ACCTTTATATGGCCCATTAGGCCCAAATC
Found at i:103229294 original size:16 final size:16
Alignment explanation
Indices: 103229273--103229304 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103229263 AAAAATTCAA
*
103229273 GATTTTGGGATTTTTG
1 GATTTTAGGATTTTTG
103229289 GATTTTAGGATTTTTG
1 GATTTTAGGATTTTTG
103229305 TGGTGTTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.28, T:0.56
Consensus pattern (16 bp):
GATTTTAGGATTTTTG
Found at i:103234775 original size:48 final size:46
Alignment explanation
Indices: 103234704--103234878 Score: 174
Period size: 48 Copynumber: 3.7 Consensus size: 46
103234694 ACAACATGAG
* *
103234704 AGCCAATGTAAGATATGTCTGGGACATGTATCGGCCTCGAGATATTTA
1 AGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TA
* * * *
103234752 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGA-A
1 AGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-ATA
* *
103234798 AGCCAATGTAAGACATGTCTGGGACATGCA-CACGCCTCGCGATATACA
1 AGCCAATGTAAGACATGTCTGGGACATGCATC-GGCCTCGAGATAT--A
* * *
103234846 AGCTAGTGTAAGACCTGTCTGGGACATAGCATC
1 AGCCAATGTAAGACATGTCTGGGACAT-GCATC
103234879 AGCTTGTGGT
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 37 0.35
48 62 0.59
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (46 bp):
AGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA
Found at i:103234781 original size:94 final size:95
Alignment explanation
Indices: 103234662--103234881 Score: 248
Period size: 94 Copynumber: 2.3 Consensus size: 95
103234652 TATGTGTGCT
* * * * *
103234662 AGTGTAAGACATGTTTGGAAAATGCATCAGCCA-CAACATGAGAGCCAATGTAAGATATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATCAACATGAAAGCCAATGTAAGACATGTCTGG
* * **
103234726 GACATGTATC-GGCCTCGAGATATTTAAGCC
66 GACATGCA-CACGCCTCGAGATATACAAGCC
* * ** *
103234756 AGTGTAAGACATGTCTGGGACATGCAT-TGGCATTGAGATGAAAGCCAATGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATCAACATGAAAGCCAATGTAAGACATGTCTGG
* *
103234820 GACATGCACACGCCTCGCGATATACAAGCT
66 GACATGCACACGCCTCGAGATATACAAGCC
*
103234850 AGTGTAAGACCTGTCTGGGACATAGCATCAGC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGC
103234882 TTGTGGTGTG
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
93 4 0.04
94 94 0.91
95 4 0.04
96 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATCAACATGAAAGCCAATGTAAGACATGTCTGG
GACATGCACACGCCTCGAGATATACAAGCC
Found at i:103234816 original size:46 final size:46
Alignment explanation
Indices: 103234664--103234827 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 46
103234654 TGTGTGCTAG
* * * * * * *
103234664 TGTAAGACATGTTTGGAAAATGCATCAGCCA-CAACATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATC-GGCATCGAGATGAAAGCCAA
* * * *
103234710 TGTAAGATATGTCTGGGACATGTATCGGCCTCGAGAT-ATTTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGA---AAGCCAA
* *
103234758 TGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGAAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGAAAGCCAA
103234804 TGTAAGACATGTCTGGGACATGCA
1 TGTAAGACATGTCTGGGACATGCA
103234828 CACGCCTCGC
Statistics
Matches: 96, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 3 0.03
46 55 0.57
48 37 0.39
49 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGAAAGCCAA
Found at i:103235007 original size:49 final size:46
Alignment explanation
Indices: 103234751--103235023 Score: 162
Period size: 49 Copynumber: 5.8 Consensus size: 46
103234741 CGAGATATTT
* ** * *
103234751 AAGCCAGTGTAAGACATGTCTGGGACAT-GCATTGGCATTGAGATG
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTTAGATG
* * ** * *
103234796 AAAGCCAATGTAAGACATGTCTGGGACAT-GCA-CACGCCTCGCGATATAC
1 -AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCA-GCCT--TTAGAT-G
* * *
103234845 AAGCTAGTGTAAGACCTGTCTGGGACATAGCATCAG-CTTGT-GGTG
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTT-TAGATG
* * * * * **
103234890 -TGTCAGTGTAAGACCTTTCTGGGACATGGTATCGACACCGATAGATG
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATC-A-GCCTTTAGATG
* *
103234937 ATAGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTACTATATG
1 A-AGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTT--TAGATG
* * *
103234986 AAGCCAGTGTAAGACCATGTCTGAGACAAGGCGTCAGC
1 AAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCAGC
103235024 ATCTTAATCC
Statistics
Matches: 173, Mismatches: 38, Indels: 29
0.72 0.16 0.12
Matches are distributed among these distances:
44 27 0.16
45 1 0.01
46 35 0.20
47 6 0.03
48 46 0.27
49 56 0.32
50 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (46 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTTAGATG
Found at i:103238092 original size:40 final size:40
Alignment explanation
Indices: 103238012--103238229 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
103238002 ACCCAAGTTT
* * * *
103238012 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
103238051 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
103238091 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
103238131 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
103238171 CTTCGGGTCTTAGCCC-GATAT-A-AACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
103238208 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
103238230 CATTCAAATG
Statistics
Matches: 165, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
37 30 0.18
38 7 0.04
39 15 0.09
40 113 0.68
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:103246131 original size:40 final size:40
Alignment explanation
Indices: 103246051--103246271 Score: 347
Period size: 40 Copynumber: 5.5 Consensus size: 40
103246041 ACCCAAGTTT
* * * *
103246051 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
103246090 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
103246130 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
103246170 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
103246210 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
103246250 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
103246272 CATTCAAATG
Statistics
Matches: 169, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.06
40 158 0.93
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:103249245 original size:38 final size:40
Alignment explanation
Indices: 103249114--103249304 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
103249104 GGATATAACG
* * * *
103249114 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
* *
103249154 ACTCACACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
103249194 ACTTGCACAAATGCCTTCGGG-CTTAGCCC-GATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* ** * *
103249232 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
* *
103249272 ACTTAGCAC-AAAGCCTTCGGGACTTAACCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
103249305 CATCATTCGA
Statistics
Matches: 121, Mismatches: 23, Indels: 14
0.77 0.15 0.09
Matches are distributed among these distances:
37 2 0.02
38 23 0.19
39 13 0.11
40 71 0.59
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:103249288 original size:78 final size:79
Alignment explanation
Indices: 103249121--103249302 Score: 192
Period size: 78 Copynumber: 2.3 Consensus size: 79
103249111 ACGACTCGCT
* * * * *
103249121 CAAATGCCTTCGGGAC-GAAGCCCGGTTATAGTGACTCACACGAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAA-CCCGATT-TATTAACTCACACGAATGCCTTCGGGACCTAACCCG
* *
103249185 GGTTTAGTAACTTGCA
64 GATATAGTAACTTGCA
* * **
103249201 CAAATGCCTTCGGG-CTTAGCCCGATTTATTAACTCGCACGAATGCCTTC-GGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAACCCGATTTATTAACTCACACGAATGCCTTCGGGA-CCTAACCCGG
*
103249264 ATATAGTCACTTAGCA
65 ATATAGTAACTT-GCA
103249280 CAAA-GCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCG
103249303 GACATCATTC
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
77 3 0.04
78 45 0.53
79 22 0.26
80 15 0.18
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGATTTATTAACTCACACGAATGCCTTCGGGACCTAACCCGGA
TATAGTAACTTGCA
Found at i:103251123 original size:200 final size:200
Alignment explanation
Indices: 103250780--103251179 Score: 721
Period size: 200 Copynumber: 2.0 Consensus size: 200
103250770 ATCACACATT
* * *
103250780 TCCCCATCATACTTTCAAAGTTTACTACTAGGTCCTTTCTAGTGAAATTCACATTTATAGCTCTA
1 TCCCCATCATACTTCCAAAGTTTACTACTAGGTCATTTCTAGTGAAATTCACATTTATAACTCTA
103250845 AATCAAAACATCAAAAATGTCACACATGAGTTAACACATATTATAGGCAATAAAATAAATATTAA
66 AATCAAAACATCAAAAATGTCACACATGAGTTAACACATATTATAGGCAATAAAATAAATATTAA
* *
103250910 ATTATTTTTATGCCTCGGTTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCGTTTTAAGGCTG
131 ATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCATTTTAAGGCTG
103250975 TCACA
196 TCACA
103250980 TCCCCATCATACTTCCAAAGTTTACTACTAGGTCATTTCTAGTGAAATTCACATTTATAACTCTA
1 TCCCCATCATACTTCCAAAGTTTACTACTAGGTCATTTCTAGTGAAATTCACATTTATAACTCTA
* *
103251045 AATCAAAACATCAAAAATGTCACACATGAGTTAACGCATATTATAGGC-ATCAAAATAAATTTTA
66 AATCAAAACATCAAAAATGTCACACATGAGTTAACACATATTATAGGCAAT-AAAATAAATATTA
103251109 AATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCATTTTAAGGCT
130 AATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCATTTTAAGGCT
103251174 GTCACA
195 GTCACA
103251180 GGATGACATA
Statistics
Matches: 192, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
199 2 0.01
200 190 0.99
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (200 bp):
TCCCCATCATACTTCCAAAGTTTACTACTAGGTCATTTCTAGTGAAATTCACATTTATAACTCTA
AATCAAAACATCAAAAATGTCACACATGAGTTAACACATATTATAGGCAATAAAATAAATATTAA
ATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCATTTTAAGGCTG
TCACA
Found at i:103257182 original size:46 final size:45
Alignment explanation
Indices: 103257020--103257189 Score: 153
Period size: 48 Copynumber: 3.7 Consensus size: 45
103257010 TGATACGTGT
* * * **
103257020 GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGA-ATGAGA
1 GCTAGTGTAAGACATATCTGGGACATGCATCGACATTGAGA-GAGA
* * * * * *
103257065 GCCAGTGTAAGGCATATCTGGGACAAGCATCGACCTTGAGATATTTAA
1 GCTAGTGTAAGACATATCTGGGACATGCATCGACATTGAGAGA---GA
* * *
103257113 GCTAATGTAAGACATATCCGGGACATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATATCTGGGACATGCATCGACATTGAGA-GAGA
*
103257159 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATATCTGGGACATGCATC
103257190 AGCCTCGCGA
Statistics
Matches: 97, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
45 31 0.32
46 30 0.31
48 35 0.36
49 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (45 bp):
GCTAGTGTAAGACATATCTGGGACATGCATCGACATTGAGAGAGA
Found at i:103257189 original size:94 final size:93
Alignment explanation
Indices: 103257020--103257189 Score: 223
Period size: 93 Copynumber: 1.8 Consensus size: 93
103257010 TGATACGTGT
* * * * *
103257020 GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGAATGAGAGCCAGTGTAAGGCATATCTG
1 GCTAATGTAAGACATATCCGGGACATGCATAGCCACAGAACGAGAGCCAGTGTAAGACATATCTG
103257085 GGACAAGCATCGACCTTGAGATATTTAA
66 GGACAAGCATCGACCTTGAGATATTTAA
* * ** * *
103257113 GCTAATGTAAGACATATCCGGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCT
1 GCTAATGTAAGACATATCCGGGACATGCATAGCCACAGA-ACGAGAGCCAGTGTAAGACATATCT
*
103257178 GGGACATGCATC
65 GGGACAAGCATC
103257190 AGCCTCGCGA
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
93 32 0.50
94 32 0.50
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (93 bp):
GCTAATGTAAGACATATCCGGGACATGCATAGCCACAGAACGAGAGCCAGTGTAAGACATATCTG
GGACAAGCATCGACCTTGAGATATTTAA
Found at i:103257202 original size:94 final size:93
Alignment explanation
Indices: 103257020--103257216 Score: 225
Period size: 94 Copynumber: 2.1 Consensus size: 93
103257010 TGATACGTGT
* * * *
103257020 GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGAATGAGAGCCAGTGTAAGGCATATCTG
1 GCTAGTGTAAGACATATCCGGGACATGCATAGCCACAGAACGAGAGCCAGTGTAAGACATATCTG
* **
103257085 GGACAAGCATCGACCTTGAGATATTTAA
66 GGACAAGCATCGACCTCGAGATATACAA
* * * ** * *
103257113 GCTAATGTAAGACATATCCGGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATATCCGGGACATGCATAGCCACAGA-ACGAGAGCCAGTGTAAGACATATCT
* *
103257178 GGGACATGCATC-AGCCTCGCGATATACAA
65 GGGACAAGCATCGA-CCTCGAGATATACAA
103257207 GCTAGTGTAA
1 GCTAGTGTAA
103257217 TTCCTATTTG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
93 33 0.39
94 52 0.61
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.22
Consensus pattern (93 bp):
GCTAGTGTAAGACATATCCGGGACATGCATAGCCACAGAACGAGAGCCAGTGTAAGACATATCTG
GGACAAGCATCGACCTCGAGATATACAA
Found at i:103257346 original size:49 final size:49
Alignment explanation
Indices: 103257253--103257378 Score: 137
Period size: 49 Copynumber: 2.5 Consensus size: 49
103257243 TGTGGTGTGT
* * * *
103257253 CAGTGTAAGACCTATCTGGGGACATGGTATCGACACGGAAATATGAGAGC
1 CAGTGTAAGACATGTCT-GGGACATGGCATCGACACGGAAATATGAAAGC
* * **
103257303 CAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTTGCTATATGAAAGC
1 CAGTGTAAGACATGTCTGGGACATGGCATCGACAC-GGAAATATGAAAGC
*
103257352 CAATGTAAGACCATGTCTGGGACATGG
1 CAGTGTAAGA-CATGTCTGGGACATGG
103257379 TGTTGGCATC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.02
49 34 0.52
50 30 0.46
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCGACACGGAAATATGAAAGC
Found at i:103260890 original size:24 final size:24
Alignment explanation
Indices: 103260862--103260914 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
103260852 TAAGGTATGG
103260862 TATGTTTTGGAAATGGTATTAAAC
1 TATGTTTTGGAAATGGTATTAAAC
103260886 TATGTTTTGGAAATGGTATTAAAC
1 TATGTTTTGGAAATGGTATTAAAC
103260910 TATGT
1 TATGT
103260915 GTGTATGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (24 bp):
TATGTTTTGGAAATGGTATTAAAC
Found at i:103264361 original size:23 final size:23
Alignment explanation
Indices: 103264331--103264544 Score: 283
Period size: 23 Copynumber: 9.3 Consensus size: 23
103264321 TAGGAATCTA
103264331 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACATCTCAGTGGTAGCT
103264354 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACATCTCAGTGGTAGCT
103264377 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACATCTCAGTGGTAGCT
* *
103264400 TCGGCTACAAT-ACAGTGGTCGCT
1 TCGGCTAC-ATCTCAGTGGTAGCT
103264423 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACATCTCAGTGGTAGCT
103264446 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACATCTCAGTGGTAGCT
*
103264469 TCGGCTACAAT-ACAGTGGTAGCT
1 TCGGCTAC-ATCTCAGTGGTAGCT
* * *
103264492 TCAGCTACGT-TACAGTGATAGCT
1 TCGGCTACATCT-CAGTGGTAGCT
* * *
103264515 TCAGCTACGT-TACAGTGATAGCT
1 TCGGCTACATCT-CAGTGGTAGCT
103264538 TCGGCTA
1 TCGGCTA
103264545 TATTACAGTG
Statistics
Matches: 177, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
22 3 0.02
23 170 0.96
24 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (23 bp):
TCGGCTACATCTCAGTGGTAGCT
Found at i:103265902 original size:18 final size:18
Alignment explanation
Indices: 103265879--103265914 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
103265869 TATTAAAAAG
*
103265879 GTCGATATATCGTATATT
1 GTCGATATATCATATATT
103265897 GTCGATATATCATATATT
1 GTCGATATATCATATATT
103265915 AGTACAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (18 bp):
GTCGATATATCATATATT
Found at i:103277200 original size:40 final size:40
Alignment explanation
Indices: 103277131--103277334 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
103277121 AACCCAAGTA
* * *
103277131 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
103277170 CCTACGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
103277210 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
103277250 CCTTC-GGATCTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCACAAATG
* *
103277290 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
103277330 CCTTC
1 CCTTC
103277335 AGATCTTAGT
Statistics
Matches: 149, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.09
40 132 0.89
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:103277344 original size:80 final size:80
Alignment explanation
Indices: 103277131--103277347 Score: 341
Period size: 80 Copynumber: 2.7 Consensus size: 80
103277121 AACCCAAGTA
* * * * *
103277131 CCTTCGGAATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTACGGGA-CTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
103277193 AGTAACTCGCACAAATG
64 AGTAACTCGCACAAATG
103277210 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
103277275 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
103277290 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGATCTTAGTCCG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCG
103277348 ATTATCATCC
Statistics
Matches: 129, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
79 15 0.12
80 113 0.88
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
TAACTCGCACAAATG
Found at i:103280639 original size:38 final size:38
Alignment explanation
Indices: 103280582--103280655 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
103280572 GAAGTGTAAG
*
103280582 AAATGTTGAGAGAATTATTCCTATGTGTGATGAATGCA
1 AAATGTTGAGAGAACTATTCCTATGTGTGATGAATGCA
*
103280620 AAATGTTGAGTGAACTATTCCTATGTGTGATGAATG
1 AAATGTTGAGAGAACTATTCCTATGTGTGATGAATG
103280656 TAATAAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (38 bp):
AAATGTTGAGAGAACTATTCCTATGTGTGATGAATGCA
Found at i:103285396 original size:20 final size:20
Alignment explanation
Indices: 103285371--103285436 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
103285361 CAGATACATG
103285371 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * * *
103285391 CCCCTGAATTGCACATAC-GTG
1 CCCCTG-TTTGTAC-TTCGGTA
*
103285412 CCCTTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
103285432 CCCCT
1 CCCCT
103285437 AAATTGGACA
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
19 2 0.06
20 17 0.52
21 12 0.36
22 2 0.06
ACGTcount: A:0.14, C:0.33, G:0.18, T:0.35
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:103285414 original size:41 final size:41
Alignment explanation
Indices: 103285354--103285473 Score: 177
Period size: 41 Copynumber: 2.9 Consensus size: 41
103285344 AGAATAATGA
* *
103285354 TGAATTGCAGATACATGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
*
103285395 TGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
103285436 TAAATTGGACATACGTGCCCCTGTCTGTACTTCAGTAC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTAC
103285474 TCCTAGATGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:103292421 original size:20 final size:20
Alignment explanation
Indices: 103292389--103292427 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
103292379 TCCCCAGTTT
*
103292389 TTGAGAAAATTTCTTAAGTG
1 TTGAGAAAATTTCTAAAGTG
103292409 TTGA-AAAAGTTTCTAAAGT
1 TTGAGAAAA-TTTCTAAAGT
103292428 TTTCAGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.38
Consensus pattern (20 bp):
TTGAGAAAATTTCTAAAGTG
Found at i:103294143 original size:18 final size:18
Alignment explanation
Indices: 103294117--103294157 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
103294107 CCATATTGCG
103294117 GCCCATGTGGACCCACAT-
1 GCCCATGT-GACCCACATA
*
103294135 GCCCGTGTGACCCACATA
1 GCCCATGTGACCCACATA
103294153 GCCCA
1 GCCCA
103294158 GAAATAGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.22, C:0.41, G:0.22, T:0.15
Consensus pattern (18 bp):
GCCCATGTGACCCACATA
Found at i:103295514 original size:68 final size:70
Alignment explanation
Indices: 103295442--103295639 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
103295432 ACACCCTGTA
* * * *
103295442 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
103295504 ATAAAT
65 ATAAAT
*
103295510 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
103295575 ATAAAT
65 ATAAAT
*
103295581 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
103295640 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:103295553 original size:41 final size:41
Alignment explanation
Indices: 103295508--103295625 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
103295498 TGAAAGATAA
103295508 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
103295549 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103295579 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103295620 ATGTAG
1 ATGTAG
103295626 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:103295565 original size:71 final size:71
Alignment explanation
Indices: 103295476--103295639 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103295466 GAGATGTATC
103295476 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103295541 AGGACA
66 AGGACA
103295547 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103295612 AGGACA
66 AGGACA
103295618 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103295640 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103302336 original size:68 final size:70
Alignment explanation
Indices: 103302264--103302461 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
103302254 ACACCCTGTA
* * * *
103302264 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
103302326 ATAAAT
65 ATAAAT
*
103302332 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
103302397 ATAAAT
65 ATAAAT
*
103302403 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
103302462 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:103302375 original size:41 final size:41
Alignment explanation
Indices: 103302330--103302447 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
103302320 TGAAAGATAA
103302330 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
103302371 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103302401 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103302442 ATGTAG
1 ATGTAG
103302448 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:103302387 original size:71 final size:71
Alignment explanation
Indices: 103302298--103302461 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103302288 GAGATGTATC
103302298 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103302363 AGGACA
66 AGGACA
103302369 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103302434 AGGACA
66 AGGACA
103302440 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103302462 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103305368 original size:64 final size:64
Alignment explanation
Indices: 103305290--103305414 Score: 241
Period size: 64 Copynumber: 2.0 Consensus size: 64
103305280 ATGAAATCTG
*
103305290 TTTCATTTAAAACTAGACTCAATAAGGAATTTAGGCTTATAAACTATATTTCTTAATTTGTAGA
1 TTTCATTTAAAACTAGACTCAATAAGGAATTTAGGCATATAAACTATATTTCTTAATTTGTAGA
103305354 TTTCATTTAAAACTAGACTCAATAAGGAATTTAGGCATATAAACTATATTTCTTAATTTGT
1 TTTCATTTAAAACTAGACTCAATAAGGAATTTAGGCATATAAACTATATTTCTTAATTTGT
103305415 TTTGTACAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (64 bp):
TTTCATTTAAAACTAGACTCAATAAGGAATTTAGGCATATAAACTATATTTCTTAATTTGTAGA
Found at i:103305682 original size:2 final size:2
Alignment explanation
Indices: 103305675--103305703 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
103305665 CATTTGAACT
103305675 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103305704 CACAAATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103307045 original size:15 final size:15
Alignment explanation
Indices: 103307025--103307056 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
103307015 TAACTTAGGA
103307025 ATGGGTCAAATTGCT
1 ATGGGTCAAATTGCT
103307040 ATGGGTCAAATTGCT
1 ATGGGTCAAATTGCT
103307055 AT
1 AT
103307057 TTAAGACCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (15 bp):
ATGGGTCAAATTGCT
Found at i:103309991 original size:40 final size:39
Alignment explanation
Indices: 103309826--103309994 Score: 135
Period size: 40 Copynumber: 4.2 Consensus size: 39
103309816 AAATTGAATG
* * *
103309826 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
103309866 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
103309906 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
103309946 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
103309985 GATATCCGGG
1 -ATATCCGGG
103309995 TTAATTCCCG
Statistics
Matches: 101, Mismatches: 23, Indels: 10
0.75 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 92 0.91
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:103316468 original size:2 final size:2
Alignment explanation
Indices: 103316461--103316493 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
103316451 CATTTGAACT
103316461 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103316494 CACAAATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103323399 original size:3 final size:3
Alignment explanation
Indices: 103323391--103323430 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
103323381 CATGCTCCTG
103323391 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
103323431 TGGTTAAGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:103333327 original size:27 final size:28
Alignment explanation
Indices: 103333297--103333362 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
103333287 AGCTGTGGAA
103333297 TGGGTTTTTGAAAAA-TTTTCTCAAA-AT
1 TGGGTTTTTGAAAAATTTTTCT-AAACAT
* *
103333324 TGGG-TTTTCAAAAGTTTTTCTAAACAT
1 TGGGTTTTTGAAAAATTTTTCTAAACAT
103333351 T-GGTTTTTGAAA
1 TGGGTTTTTGAAA
103333363 GGGATAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45
Consensus pattern (28 bp):
TGGGTTTTTGAAAAATTTTTCTAAACAT
Found at i:103341533 original size:67 final size:66
Alignment explanation
Indices: 103341332--103341510 Score: 270
Period size: 67 Copynumber: 2.7 Consensus size: 66
103341322 GCCCGTCAGA
*
103341332 ACATTAAACATAGGGTATACTATGTAAGAACATAGCTAGGCTATGGTAACAAAAGAAGTCCACCA
1 ACATTAAACATAGGGTATACTGTGTAAG-ACATAGCTAGGCTATGGTAACAAAAGAAGTCCACCA
*
103341397 GG
65 AG
* *
103341399 ACATTAAACAT-GGGATATACTGTGTAAGACTATAGCTAGACTATGGCAACAAAAGAAGTCCACC
1 ACATTAAACATAGGG-TATACTGTGTAAGAC-ATAGCTAGGCTATGGTAACAAAAGAAGTCCACC
103341463 AAG
64 AAG
*
103341466 ACATTAAACATAGGGTATACTGTGTAAGATCATAGCTGGGCTATG
1 ACATTAAACATAGGGTATACTGTGTAAGA-CATAGCTAGGCTATG
103341511 ATGTCAGGTA
Statistics
Matches: 102, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
66 5 0.05
67 93 0.91
68 4 0.04
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (66 bp):
ACATTAAACATAGGGTATACTGTGTAAGACATAGCTAGGCTATGGTAACAAAAGAAGTCCACCAA
G
Found at i:103353905 original size:20 final size:20
Alignment explanation
Indices: 103353867--103353905 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
103353857 TGTTTAATTG
*
103353867 AATTTATTTTATATCTATTA
1 AATTTATTTTACATCTATTA
103353887 AATTTATATTTACAT-TATT
1 AATTTAT-TTTACATCTATT
103353906 GTTACATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
AATTTATTTTACATCTATTA
Found at i:103360973 original size:40 final size:40
Alignment explanation
Indices: 103360936--103361121 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
103360926 GCTACTCGTT
*
103360936 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
103360976 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
103361016 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
103361056 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
103361097 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103361122 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:103369011 original size:40 final size:40
Alignment explanation
Indices: 103368974--103369159 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
103368964 GCTACTCGTT
*
103368974 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
103369014 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
103369054 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
103369094 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
103369135 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103369160 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:103387974 original size:40 final size:39
Alignment explanation
Indices: 103387809--103387992 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
103387799 GAAATTGATG
* * *
103387809 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
103387849 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
103387889 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
103387929 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
103387968 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
103387993 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:103388017 original size:80 final size:81
Alignment explanation
Indices: 103387849--103388037 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
103387839 GCTGGAAATT
* * * *
103387849 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
103387914 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
103387930 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
103387993 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
103388009 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
103388038 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:103398258 original size:20 final size:21
Alignment explanation
Indices: 103398223--103398270 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
103398213 TCCGGCCCAT
*
103398223 TATAAACCCAAAAATAATAAA
1 TATAAAACCAAAAATAATAAA
103398244 TATAAAACC-AAAATAATAAA
1 TATAAAACCAAAAATAATAAA
103398264 TAATAAA
1 T-ATAAA
103398271 TGGCCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (21 bp):
TATAAAACCAAAAATAATAAA
Found at i:103399619 original size:12 final size:12
Alignment explanation
Indices: 103399602--103399626 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103399592 ATATTGTTTT
103399602 ATATTTTCTATA
1 ATATTTTCTATA
103399614 ATATTTTCTATA
1 ATATTTTCTATA
103399626 A
1 A
103399627 ATGTTCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (12 bp):
ATATTTTCTATA
Found at i:103403909 original size:16 final size:15
Alignment explanation
Indices: 103403885--103403914 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
103403875 AACTATTTTA
103403885 TTACAAATTTCACTC
1 TTACAAATTTCACTC
103403900 TTACATAATTTCACT
1 TTACA-AATTTCACT
103403915 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:103404237 original size:50 final size:49
Alignment explanation
Indices: 103404126--103404237 Score: 143
Period size: 49 Copynumber: 2.3 Consensus size: 49
103404116 CTAGTACGCA
* **
103404126 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACAAATGCGACCAACAATCCAATACACG
* * * * *
103404175 TAGTAGCATGCACTTAGTACTACAAATGTGTCCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACAAATGCGACC-AACAATCCAATACACG
103404225 TAGTAGCCTGCAC
1 TAGTAGCCTGCAC
103404238 CTTAACCATC
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
49 29 0.55
50 24 0.45
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACAAATGCGACCAACAATCCAATACACG
Found at i:103404244 original size:32 final size:32
Alignment explanation
Indices: 103404208--103404268 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
103404198 AAATGTGTCC
103404208 TAACCATCTAATACACGTAGTAGCCTGCACCT
1 TAACCATCTAATACACGTAGTAGCCTGCACCT
103404240 TAACCATCTAATACACGTAGTAGCCTGCA
1 TAACCATCTAATACACGTAGTAGCCTGCA
103404269 GTTAGTACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.25
Consensus pattern (32 bp):
TAACCATCTAATACACGTAGTAGCCTGCACCT
Found at i:103404375 original size:50 final size:50
Alignment explanation
Indices: 103404251--103404539 Score: 312
Period size: 50 Copynumber: 5.7 Consensus size: 50
103404241 AACCATCTAA
* * * * * *
103404251 TACACGTAGTAGCCTGCAGTTAGTACTACACACGTGA-TTGAAGT-TGTTGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AACTAT-CT-GG
* * *
103404302 TACGCATAGTAGCCTGAAATTAGTACTACACATGTGACCTAACTATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGG
* * * * *
103404352 TACACGTAGTAGCTTGCACTTAGTACTACACATGTGACCTAACCATTTGA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGG
* *
103404402 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGG
* * * **
103404452 TACACATTGTAGCCTGCACTTAGTACTACACATATGACCTAAAACCATCTTA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACTATCTGG
* *
103404504 AACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTG
103404540 TTCTCACAAT
Statistics
Matches: 202, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
50 125 0.62
51 36 0.18
52 41 0.20
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGG
Found at i:103408715 original size:21 final size:21
Alignment explanation
Indices: 103408691--103408733 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
103408681 ATAAAATTAA
103408691 AAAAGAA-AAACGAATCAATTC
1 AAAAGAATAAA-GAATCAATTC
* *
103408712 AAAATAATAAAGAATCGATTC
1 AAAAGAATAAAGAATCAATTC
103408733 A
1 A
103408734 TTTTCAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.60, C:0.12, G:0.09, T:0.19
Consensus pattern (21 bp):
AAAAGAATAAAGAATCAATTC
Found at i:103410262 original size:45 final size:45
Alignment explanation
Indices: 103410211--103410296 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
103410201 ATGTGATCTA
* *
103410211 AACTCATTGATTTGTGGTCTGAGTTCATGATATATGTGACATCCG
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCCG
* *
103410256 AACTCATTTAGTTGTGGTCTAAGTTCGTGATATATGTGACA
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACA
103410297 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (45 bp):
AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCCG
Found at i:103412057 original size:46 final size:46
Alignment explanation
Indices: 103411884--103412075 Score: 123
Period size: 46 Copynumber: 4.2 Consensus size: 46
103411874 ATTGTGGGCT
* * * * * * *
103411884 AGTGTAAGACGTGTCTGGGACATGCATCGGTCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGACTCGA-GACGATAGCC
* *
103411930 AGTGTAAGACCATG--T--GACATGGCATC-GACATCGAGATGAGT-GCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGAC-TCGAGACGA-TAGCC
*
103411974 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG-TAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGACTCGAGACGAT-AGCC
* * * * *
103412020 AGTGTAAGACATTTTTGGGACATGCATC-GACTACGAGATGATAGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGACT-CGAGACGATAGCC
103412066 AGTGTAAGAC
1 AGTGTAAGAC
103412076 CACATCTAGG
Statistics
Matches: 117, Mismatches: 15, Indels: 28
0.73 0.09 0.17
Matches are distributed among these distances:
43 11 0.09
44 22 0.19
45 6 0.05
46 67 0.57
47 11 0.09
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGACTCGAGACGATAGCC
Found at i:103417917 original size:27 final size:27
Alignment explanation
Indices: 103417863--103417961 Score: 94
Period size: 27 Copynumber: 3.6 Consensus size: 27
103417853 TTAGAATACT
* *
103417863 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
*
103417891 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
* *
103417918 -TCGATTTGTAAAATTCCTGAAATA-CC
1 TTAG-TTTGTAAAATTACTGAAATACCC
* *
103417944 TTCGACTTGTAAAATTAC
1 TTAG-TTTGTAAAATTAC
103417962 CAAAGTACCC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.07
27 50 0.82
28 7 0.11
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:103417986 original size:26 final size:26
Alignment explanation
Indices: 103417955--103418015 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
103417945 TCGACTTGTA
103417955 AAATTACCAAAGTACCCCCGATTTAC
1 AAATTACCAAAGTACCCCCGATTTAC
* ****
103417981 AAATTATCGTTTTACCCCCGATTTAC
1 AAATTACCAAAGTACCCCCGATTTAC
103418007 ATAATTACC
1 A-AATTACC
103418016 GTTTTACCCC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAGTACCCCCGATTTAC
Found at i:103418012 original size:27 final size:27
Alignment explanation
Indices: 103417967--103418174 Score: 237
Period size: 27 Copynumber: 7.8 Consensus size: 27
103417957 ATTACCAAAG
*
103417967 TACCCCCGATTTACA-AATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* * *
103417993 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
*
103418020 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTATCGTTT
* *
103418047 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
**
103418074 TACCCTCGATTTACA-AATTATAATTT
1 TACCCTCGATTTACAGAATTATCGTTT
* *
103418100 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAGAATTATC-GTTT
*
103418127 TACCCTTGATTTACAGAATTA-CTGTTT
1 TACCCTCGATTTACAGAATTATC-GTTT
*
103418154 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
103418175 CTAAAATACC
Statistics
Matches: 161, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
26 38 0.24
27 122 0.76
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTATCGTTT
Found at i:103418040 original size:80 final size:79
Alignment explanation
Indices: 103417967--103418175 Score: 242
Period size: 80 Copynumber: 2.6 Consensus size: 79
103417957 ATTACCAAAG
* * **
103417967 TACCCCCGATTTACA-AATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCC-CTGAT
1 TACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTACA-AATTACAATTTTACCCTC-GAT
* * *
103418030 TTACATAATTATCGTTT
63 TTACAGAATTACCATTT
* *
103418047 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAATTATAATTTTACCCTCGATTT
1 TACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTACAAATTACAATTTTACCCTCGATTT
* *
103418112 ATAGAATTACTATTT
65 ACAGAATTACCATTT
*
103418127 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC-GTTTTACCCTCGATTTAC-AAATTAC
103418176 TAAAATACCC
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 78 0.71
81 31 0.28
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (79 bp):
TACCCTCGATTTACAGAATTACGTTTTACCCTCGATTTACAAATTACAATTTTACCCTCGATTTA
CAGAATTACCATTT
Found at i:103418078 original size:107 final size:107
Alignment explanation
Indices: 103417967--103418175 Score: 294
Period size: 107 Copynumber: 2.0 Consensus size: 107
103417957 ATTACCAAAG
** * *
103417967 TACCCCCGATTTACAAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCCTGATTT
1 TACCCCCGATTTACAAATTATAATTTTACCCCCGATTTACAGAATTACCATTTTACCCCTGATTT
* *
103418032 ACATAATTA-TCGTTTTACCCTCGACTTACAGAATTACCGTTT
66 ACAGAATTACT-GTTTTACCCTCGACTTACAAAATTACCGTTT
* * * * *
103418074 TACCCTCGATTTACAAATTATAATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTT
1 TACCCCCGATTTACAAATTATAATTTTACCCCCGATTTACAGAATTACCATTTTACCCCTGATTT
*
103418139 ACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
66 ACAGAATTACTGTTTTACCCTCGACTTACAAAATTAC
103418176 TAAAATACCC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 88 0.99
108 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (107 bp):
TACCCCCGATTTACAAATTATAATTTTACCCCCGATTTACAGAATTACCATTTTACCCCTGATTT
ACAGAATTACTGTTTTACCCTCGACTTACAAAATTACCGTTT
Found at i:103418177 original size:54 final size:53
Alignment explanation
Indices: 103417974--103418175 Score: 262
Period size: 54 Copynumber: 3.8 Consensus size: 53
103417964 AAGTACCCCC
* * * *
103417974 GATTTACAAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCCT
1 GATTTACAAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
* * *
103418027 GATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTC
1 GATTTACA-AATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
** * *
103418081 GATTTACAAATTATAATTTTACCCTCGATTTATAGAATTACTATTTTACCCTT
1 GATTTACAAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
*
103418134 GATTTACAGAATTA-CTGTTTTACCCTCGATTTACAAAATTAC
1 GATTTACA-AATTATC-GTTTTACCCTCGATTTACAGAATTAC
103418176 TAAAATACCC
Statistics
Matches: 130, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
53 54 0.42
54 76 0.58
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (53 bp):
GATTTACAAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
Found at i:103418184 original size:27 final size:27
Alignment explanation
Indices: 103418074--103418350 Score: 113
Period size: 27 Copynumber: 10.2 Consensus size: 27
103418064 ATTACCGTTT
**
103418074 TACCCTCGATTTAC-AAATTA-TAATTT
1 TACCCTCGATTTACAAAATTACTAA-AA
* * ***
103418100 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
103418127 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
103418154 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* **
103418181 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* *** **
103418208 TACCCT-TAGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *
103418235 TACCCTCAATTTTTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
103418262 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
103418289 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
103418318 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
103418345 TACCCT
1 TACCCT
103418351 TGGTTTGTAG
Statistics
Matches: 203, Mismatches: 32, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
26 18 0.09
27 156 0.77
28 10 0.05
29 19 0.09
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:103418185 original size:107 final size:107
Alignment explanation
Indices: 103417940--103418186 Score: 289
Period size: 107 Copynumber: 2.3 Consensus size: 107
103417930 ATTCCTGAAA
* ** * **
103417940 TACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACAAATTATCGTTTTACCCCCGATTT
1 TACCCTCGACTTACAAAATTACCAAAATACCCCCGATTTACAAATTATAATTTTACCCCCGATTT
* * *
103418005 ACATAATTACCGTTTTACCCCTGATTTACATAATTATCGTTT
66 ACAGAATTACCATTTTACCCCTGATTTACAGAATTATCGTTT
* **** * *
103418047 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAATTATAATTTTACCCTCGATTT
1 TACCCTCGACTTACAAAATTACCAAAATACCCCCGATTTACAAATTATAATTTTACCCCCGATTT
* * *
103418112 ATAGAATTACTATTTTACCCTTGATTTACAGAATTA-CTGTTT
66 ACAGAATTACCATTTTACCCCTGATTTACAGAATTATC-GTTT
* *
103418154 TACCCTCGATTTACAAAATTACTAAAATACCCC
1 TACCCTCGACTTACAAAATTACCAAAATACCCC
103418187 TAGTTTGTAA
Statistics
Matches: 113, Mismatches: 26, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
106 1 0.01
107 112 0.99
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (107 bp):
TACCCTCGACTTACAAAATTACCAAAATACCCCCGATTTACAAATTATAATTTTACCCCCGATTT
ACAGAATTACCATTTTACCCCTGATTTACAGAATTATCGTTT
Found at i:103418212 original size:54 final size:55
Alignment explanation
Indices: 103418154--103418377 Score: 138
Period size: 54 Copynumber: 4.1 Consensus size: 55
103418144 ATTACTGTTT
*
103418154 TACCCTCGATTTACAAAATTACTAAAATACCCCT-AGTTTGTAAAATTATCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCCTCAGTTTGTAAAATTACCAAAA
* *** ** * *
103418208 TACCCT-TAGTTTGTGAAATTACCGAAATA-CCCTCAATTTTTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAATACCCCTCAGTTTGTAAAATTACCAAAA
* * * * * *
103418262 TACCC-CTGATTTACAAAGTTAC-AGAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAATACCCCTCAGTTTGT-AAAATTACCA-AAA
* * * * ** * *
103418318 TACCATTGGTTTACAAAATTACTGAAATA-CCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCCTCAGTTTGTAAAATTACCAAAA
*
103418372 CACCCT
1 TACCCT
103418378 TGTAGGATGA
Statistics
Matches: 124, Mismatches: 35, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
53 5 0.04
54 69 0.56
55 18 0.15
56 32 0.26
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (55 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCCTCAGTTTGTAAAATTACCAAAA
Found at i:103418356 original size:27 final size:27
Alignment explanation
Indices: 103418127--103418352 Score: 129
Period size: 27 Copynumber: 8.3 Consensus size: 27
103418117 ATTACTATTT
* ***
103418127 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* *
103418154 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* ** *
103418181 TACCCCT-AGTTTGTAAAATTA-TCAAAA
1 TACCCTTGA-TTTACAAAATTACT-GAAA
*** *
103418208 TACCCTT-AGTTTGTGAAATTACCGAAA
1 TACCCTTGA-TTTACAAAATTACTGAAA
** ** **
103418235 TACCCTCAATTTTTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * *
103418262 TACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
103418289 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACT-GAAA
* *
103418318 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
103418345 TACCCTTG
1 TACCCTTG
103418353 GTTTGTAGAT
Statistics
Matches: 157, Mismatches: 32, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
26 2 0.01
27 129 0.82
28 8 0.05
29 18 0.11
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTGAAA
Found at i:103418440 original size:27 final size:27
Alignment explanation
Indices: 103418410--103418500 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
103418400 ACCCCTATTA
* *
103418410 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAT
*
103418437 GGTAAAGTGACCGTAAAGCCCCTGTAT
1 GGTAAAATGACCGTAAAGCCCCTGTAT
*
103418464 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAT
103418491 GGTAAAATGA
1 GGTAAAATGA
103418501 TGAATATGCC
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAT
Found at i:103419688 original size:25 final size:25
Alignment explanation
Indices: 103419659--103419707 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
103419649 TTATAACATG
* * *
103419659 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
103419684 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
103419708 TTATGTATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:103419787 original size:11 final size:11
Alignment explanation
Indices: 103419751--103419806 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
103419741 ACATGTATGT
103419751 ATGATATGCAC
1 ATGATATGCAC
* *
103419762 ATGACATG--T
1 ATGATATGCAC
103419771 ATGATATGCAC
1 ATGATATGCAC
*
103419782 ATGATATG--T
1 ATGATATGCAC
103419791 ATGATATGCAC
1 ATGATATGCAC
103419802 ATGAT
1 ATGAT
103419807 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:103419806 original size:20 final size:20
Alignment explanation
Indices: 103419741--103419806 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
103419731 GATTTGATAA
103419741 ACATG-TATGTATGATATGC
1 ACATGATATGTATGATATGC
*
103419760 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
103419780 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
103419800 ACATGAT
1 ACATGAT
103419807 GTAATCATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 5 0.11
20 39 0.89
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:103419915 original size:24 final size:23
Alignment explanation
Indices: 103419855--103420016 Score: 208
Period size: 23 Copynumber: 7.0 Consensus size: 23
103419845 GAGGAAGTGA
103419855 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
103419878 TAAATGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
103419901 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
103419925 CAAAAGGGCTTATG-CCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
103419948 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
103419972 AAAAGGGCTT-TGCCCCAG-T-T
1 AAAAGGGCTTATGCCCCAGTTAT
*
103419992 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
103420016 A
1 A
103420017 TGATAAAGCA
Statistics
Matches: 124, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.06
21 6 0.05
22 17 0.14
23 47 0.38
24 47 0.38
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:103419969 original size:70 final size:70
Alignment explanation
Indices: 103419855--103419992 Score: 242
Period size: 70 Copynumber: 2.0 Consensus size: 70
103419845 GAGGAAGTGA
*
103419855 AAAAGGGCTTATGCCCCAGTTATTAAATGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT-TGCCCCA
103419920 GTTATC
65 GTTATC
*
103419926 AAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTTGCCCCAG
103419990 TTA
66 TTA
103419993 AAAGAGGCTA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
69 11 0.17
70 41 0.63
71 13 0.20
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTTGCCCCAG
TTATC
Found at i:103420014 original size:22 final size:20
Alignment explanation
Indices: 103419855--103420014 Score: 61
Period size: 24 Copynumber: 7.0 Consensus size: 20
103419845 GAGGAAGTGA
*
103419855 AAAAGGGCTTATGCCCCAGTT
1 AAAAGGGC-TAGGCCCCAGTT
* *
103419876 ATTAAATGGCTTATGCCCCAGTTAT
1 A--AAAGGGC-TAGGCCCCAG-T-T
*
103419901 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGC-TAGGCCCCAG-T-T
*
103419925 CAAAAGGGCTTATG-CCCAGTT
1 -AAAAGGGC-TAGGCCCCAGTT
*
103419946 ATTAAAGGGCTTATGCCCCAGTTATT
1 A--AAAGGGC-TAGGCCCCAG---TT
**
103419972 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTAGGCCCCAGTT
103419992 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTAGGCC-CCAGTT
103420014 A
1 A
103420015 TATGATAAAG
Statistics
Matches: 121, Mismatches: 5, Indels: 25
0.80 0.03 0.17
Matches are distributed among these distances:
20 8 0.07
21 9 0.07
22 20 0.17
23 36 0.30
24 43 0.36
25 1 0.01
26 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (20 bp):
AAAAGGGCTAGGCCCCAGTT
Found at i:103434301 original size:68 final size:68
Alignment explanation
Indices: 103434178--103434369 Score: 212
Period size: 68 Copynumber: 2.9 Consensus size: 68
103434168 GTCTCGGCAA
* * * * * *
103434178 ACTCGATATGTTGCCATAGCCTAGGTATGATCTTACACAATATGATCCCACGTTTAATGTCTT-G
1 ACTCCATATGTTGCCATAGCCTAGCTATGGTCTTACACATTATCATCCCACGTTTAATCTCTTAG
103434242 AAGG
66 -AGG
* ** *
103434246 ACTCCATATATTGCCATAGCCTAGCTATGGTCTTACACATTATCATCTTATGTTTAATCTCTTAG
1 ACTCCATATGTTGCCATAGCCTAGCTATGGTCTTACACATTATCATCCCACGTTTAATCTCTTAG
103434311 AGG
66 AGG
* * * *
103434314 ACTCCATATGTTGCCCT--CTCTAGCTATGGTCTTACACA-TATGAACCCAAGTTTAAT
1 ACTCCATATGTTGCCATAGC-CTAGCTATGGTCTTACACATTATCATCCCACGTTTAAT
103434370 GTCCTAGTAG
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
66 14 0.13
67 19 0.18
68 71 0.68
69 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (68 bp):
ACTCCATATGTTGCCATAGCCTAGCTATGGTCTTACACATTATCATCCCACGTTTAATCTCTTAG
AGG
Found at i:103438821 original size:55 final size:55
Alignment explanation
Indices: 103438752--103438869 Score: 220
Period size: 55 Copynumber: 2.2 Consensus size: 55
103438742 GGTCAATCAA
*
103438752 AACATATC-ATCACTTAACCAATTCAACATCAACCATTTTAAGCACCAAACTGCT
1 AACATGTCAATCACTTAACCAATTCAACATCAACCATTTTAAGCACCAAACTGCT
103438806 AACATGTCAATCACTTAACCAATTCAACATCAACCATTTTAAGCACCAAACTGCT
1 AACATGTCAATCACTTAACCAATTCAACATCAACCATTTTAAGCACCAAACTGCT
103438861 AACATGTCA
1 AACATGTCA
103438870 TTAACCATAA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 7 0.11
55 55 0.89
ACGTcount: A:0.41, C:0.29, G:0.05, T:0.25
Consensus pattern (55 bp):
AACATGTCAATCACTTAACCAATTCAACATCAACCATTTTAAGCACCAAACTGCT
Found at i:103443140 original size:68 final size:68
Alignment explanation
Indices: 103443031--103443166 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
103443021 GATAGGTTTT
*
103443031 TGGCTTTGGATGTGTTTCAAATAATGCATTAATTCATCCCTAGATATCTCAATATGCACAAATTT
1 TGGCTCTGGATGTGTTTCAAATAATGCATTAATTCATCCCTAGATATCTCAATATGCACAAATTT
103443096 AAG
66 AAG
103443099 TGGCTCTGGATGTGTTTCAAATAATGCATTAATTCATCCCTAGATATCTCAATATGCACAAATTT
1 TGGCTCTGGATGTGTTTCAAATAATGCATTAATTCATCCCTAGATATCTCAATATGCACAAATTT
103443164 AAG
66 AAG
103443167 CAACCAAACA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (68 bp):
TGGCTCTGGATGTGTTTCAAATAATGCATTAATTCATCCCTAGATATCTCAATATGCACAAATTT
AAG
Found at i:103446453 original size:24 final size:23
Alignment explanation
Indices: 103446390--103446494 Score: 70
Period size: 24 Copynumber: 4.3 Consensus size: 23
103446380 AACTCCTCCT
*
103446390 GAGCTGATGAACAATAAACTCTATC
1 GAGCTGA-GAACAGTAAACTCTA-C
103446415 GAGCT-AGAAACAGTAAACTCTGAC
1 GAGCTGAG-AACAGTAAACTCT-AC
* * *
103446439 GAGCTGAGAATAGTAAGCTCTTAT
1 GAGCTGAGAACAGTAAACTC-TAC
*
103446463 GAGCTG-GCATATCAGTAAGCTCATAC
1 GAGCTGAG-A-A-CAGTAAACTC-TAC
103446489 GAGCTG
1 GAGCTG
103446495 CGGTGAGTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
23 2 0.03
24 37 0.56
25 10 0.15
26 17 0.26
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (23 bp):
GAGCTGAGAACAGTAAACTCTAC
Found at i:103454618 original size:40 final size:40
Alignment explanation
Indices: 103454581--103454765 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
103454571 GCTACTCGTT
*
103454581 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
103454621 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
103454661 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
103454701 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
103454742 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103454766 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 13 0.10
40 108 0.83
41 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:103462662 original size:39 final size:40
Alignment explanation
Indices: 103462617--103462801 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
103462607 GCTACTCGTT
*
103462617 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
103462657 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
103462696 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
103462736 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
103462777 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103462802 CATCATTCGA
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 37 0.28
40 83 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:103465616 original size:68 final size:67
Alignment explanation
Indices: 103465533--103465795 Score: 307
Period size: 68 Copynumber: 3.9 Consensus size: 67
103465523 TTTCTAGCAC
* * * *
103465533 CATAGCCCAACTATGGTCTTGCA-ATGTATGAACCCATGTTTAATGTTTTGGTAGACTCCATATG
1 CATAGCCTAGCTATGGTCTTACACAT-TATGAACCCATGTTTAATGTCTTGG-AGACTCCATATG
103465597 TT-T
64 TTGT
* * *
103465600 CCATAGCCTAAG-TATGGTCTTACACAGTATGAACCCATGTTTAATGTCCTGGCGAACTCCATAT
1 -CATAGCCT-AGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGGAG-ACTCCATAT
103465664 GTTGT
63 GTTGT
* * * *
103465669 CATAGCCTAGCTATGGTCTTACACATTATAAACTCATGTTTAATGTCTTGGAGGACTTCATATAT
1 CATAGCCTAGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGGA-GACTCCATATGT
103465734 TGT
65 TGT
* * * *
103465737 CATATCCTAGCTATGATCTTACACATTATGAATCCATGTTTAATGACTTGGTAGACTCC
1 CATAGCCTAGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGG-AGACTCC
103465796 TGATTTCGAG
Statistics
Matches: 167, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
67 3 0.02
68 159 0.95
69 5 0.03
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36
Consensus pattern (67 bp):
CATAGCCTAGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGGAGACTCCATATGTT
GT
Found at i:103466077 original size:19 final size:19
Alignment explanation
Indices: 103466053--103466092 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
103466043 CCTTCAAAAG
103466053 TAAGATACTTATTACAGAA
1 TAAGATACTTATTACAGAA
103466072 TAAGATACTTATTACAGAA
1 TAAGATACTTATTACAGAA
103466091 TA
1 TA
103466093 CACAATACGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (19 bp):
TAAGATACTTATTACAGAA
Found at i:103466646 original size:2 final size:2
Alignment explanation
Indices: 103466641--103466684 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
103466631 CTCTCCACCC
103466641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103466683 AT
1 AT
103466685 CCTAATTTGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103467508 original size:18 final size:17
Alignment explanation
Indices: 103467470--103467509 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
103467460 TAACATTTAT
*
103467470 ATTTTTTTATTAATTTA
1 ATTTTTTTATTAAGTTA
*
103467487 ATTTTTTTAATTAAGTTG
1 ATTTTTTT-ATTAAGTTA
103467505 ATTTT
1 ATTTT
103467510 ATACCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (17 bp):
ATTTTTTTATTAAGTTA
Done.