Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 33 of 438
Found at i:8081955 original size:17 final size:19
Alignment explanation
Indices: 8081859--8081947 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
8081849 TCATATCTTT
8081859 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
8081878 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
8081896 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
8081913 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
*
8081932 CAAGATTGCATATCAT
1 TAAGATTGCATATCAT
8081948 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:8082349 original size:45 final size:45
Alignment explanation
Indices: 8082300--8082486 Score: 196
Period size: 45 Copynumber: 4.2 Consensus size: 45
8082290 TACTATATTT
*
8082300 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATTATCTTC
1 GATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTTC
* * * **
8082345 GATCTGCTCCCCATCTAATACAGGGACGCCAATTTTGCT-TCTTC
1 GATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTTC
* * * * *
8082389 AATCTGCTCCCCATCTAATATAGAGATGCCAAATCCATTATCTCC
1 GATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTTC
* * * * * * * *
8082434 AATTTGCTCCCCGTCTAATACAAAGATGCCAAATCTGTCATCTTG
1 GATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTTC
8082479 GATCTGCT
1 GATCTGCT
8082487 TCGATGTAAA
Statistics
Matches: 114, Mismatches: 27, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
44 35 0.31
45 79 0.69
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (45 bp):
GATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTTC
Found at i:8082465 original size:89 final size:89
Alignment explanation
Indices: 8082301--8082465 Score: 231
Period size: 89 Copynumber: 1.9 Consensus size: 89
8082291 ACTATATTTG
* * * *
8082301 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATTATCTTCGATCTGCTCCCCATCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCCATTATCTCCAATCTGCTCCCCATCTAATAC
**
8082366 AGGGACGCCAATTTTGCTTCTTCA
66 AAAGACGCCAATTTTGCTTCTTCA
* * * *
8082390 ATCTGCTCCCCATCTAATATAGAGATGCCAAATCCATTATCTCCAATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCCATTATCTCCAATCTGCTCCCCATCTAATAC
*
8082455 AAAGATGCCAA
66 AAAGACGCCAA
8082466 ATCTGTCATC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
89 65 1.00
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.29
Consensus pattern (89 bp):
ATCTGCTCCCCATCTAATACAGAGACGCCAAATCCATTATCTCCAATCTGCTCCCCATCTAATAC
AAAGACGCCAATTTTGCTTCTTCA
Found at i:8082629 original size:78 final size:78
Alignment explanation
Indices: 8082500--8082716 Score: 292
Period size: 78 Copynumber: 2.8 Consensus size: 78
8082490 ATGTAAACAC
*
8082500 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
8082565 TGGATCTGTTTCA
66 TGGATCTGCTTCA
* * *
8082578 ATGAAGGTCCA-ATCTGTTATATCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
8082642 TTTGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * * **
8082656 ATGAAGGTTAGATCTGCTGTGTCTTCAATCTGCTCTCGGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
8082717 TGTTTCTTCG
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
77 1 0.01
78 118 0.98
79 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:8082786 original size:199 final size:200
Alignment explanation
Indices: 8082544--8082916 Score: 613
Period size: 199 Copynumber: 1.9 Consensus size: 200
8082534 CCCCGTCTAA
* *
8082544 TACAGAGATGCCAAATCATCTTGGATCTGTTTCAATGAAGGTCCAATCTGTTATATCTTCGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCCAATCTGTTATATCTTCGATCT
* * * * *
8082609 GCTCCCTGTCTAATACAGAGATGCCAAATCATCTTTGATCTGCTTCAATGAAGGTTAGATCTGC-
66 GCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGAGCTGCTTCAATAAAGGTCAGATCTGCT
* * **
8082673 TGTGTCTTCAATCTGCTCTCGGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCT
131 TGTGTCTTCAATCTGCTCCCCGTCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCT
8082738 GACAG
196 GACAG
*
8082743 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCCAATCTGTTATGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCCAATCTGTTATATCTTCGATCT
8082808 GCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGAGCTGCTTCAATAAAGGTCAGATCTGCT
66 GCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGAGCTGCTTCAATAAAGGTCAGATCTGCT
* *
8082873 TGTGTCTTCAATTTGCTCCCCGTCTAATACAGAGATGCCAAATC
131 TGTGTCTTCAATCTGCTCCCCGTCGAATACAGAGATGCCAAATC
8082917 ATCTTAGATC
Statistics
Matches: 159, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
199 121 0.76
200 38 0.24
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (200 bp):
TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCCAATCTGTTATATCTTCGATCT
GCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGAGCTGCTTCAATAAAGGTCAGATCTGCT
TGTGTCTTCAATCTGCTCCCCGTCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCT
GACAG
Found at i:8082838 original size:78 final size:79
Alignment explanation
Indices: 8082743--8082933 Score: 314
Period size: 79 Copynumber: 2.4 Consensus size: 79
8082733 TCTCTGACAG
*
8082743 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCCA-ATCTG-TTATGTCTTCGAT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGT-CAGATCTGCTTATGTCTTCAAT
8082806 CTGCTCCCCGTCTAA
65 CTGCTCCCCGTCTAA
* * *
8082821 TACAGAGATGCCAAATCATCTTGGAGCTGCTTCAATAAAGGTCAGATCTGCTTGTGTCTTCAATT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCAGATCTGCTTATGTCTTCAATC
8082886 TGCTCCCCGTCTAA
66 TGCTCCCCGTCTAA
*
8082900 TACAGAGATGCCAAATCATCTTAGATCTGCTTCA
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCA
8082934 GTGTAAACAC
Statistics
Matches: 105, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
77 2 0.02
78 46 0.44
79 57 0.54
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (79 bp):
TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCAGATCTGCTTATGTCTTCAATC
TGCTCCCCGTCTAA
Found at i:8083020 original size:35 final size:35
Alignment explanation
Indices: 8082969--8083038 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
8082959 GCTATGTCTT
* *
8082969 TGATTTGCTCTCTGACAATACAGAGATGCCAAATC
1 TGATCTGCTCTCTGACAATACAAAGATGCCAAATC
8083004 TGATCTGCTCTCTGACAATACAAAGATGCCAAATC
1 TGATCTGCTCTCTGACAATACAAAGATGCCAAATC
8083039 ATCTTAGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (35 bp):
TGATCTGCTCTCTGACAATACAAAGATGCCAAATC
Found at i:8083115 original size:122 final size:122
Alignment explanation
Indices: 8082898--8083258 Score: 560
Period size: 131 Copynumber: 2.9 Consensus size: 122
8082888 CTCCCCGTCT
*
8082898 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAACCAAATCTGCTA
1 AATACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAACCAAATCTGCTA
8082963 TGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGATCTGCTCTCTGAC
66 TGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGATCTGCTCTCTGAC
* * * *
8083020 AATACAAAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTA
1 AATACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAACCAAATCTGCTA
* **
8083085 TATCTTCAATTTGCTCTCTGACAATACAGAGATGCCGAATTTGCTATCTTCGATCTGCTCTCTGA
66 TGTCTTTGATTTGCTCTCTGACAATACAGAGATGCC-AA------ATC-T-GATCTGCTCTCTGA
8083150 C
122 C
*
8083151 AATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAACCAAATCTGCTA
1 AATACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAACCAAATCTGCTA
8083216 TGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTG
66 TGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTG
8083259 CTATATCTTT
Statistics
Matches: 214, Mismatches: 16, Indels: 18
0.86 0.06 0.07
Matches are distributed among these distances:
122 94 0.44
123 3 0.01
124 3 0.01
129 3 0.01
130 3 0.01
131 108 0.50
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (122 bp):
AATACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAACCAAATCTGCTA
TGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGATCTGCTCTCTGAC
Found at i:8083239 original size:87 final size:85
Alignment explanation
Indices: 8083126--8083433 Score: 286
Period size: 87 Copynumber: 3.5 Consensus size: 85
8083116 ATGCCGAATT
*
8083126 TGCTA-TCTTCGATCTGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGTG
1 TGCTATTCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGAT-TGCTTCAGTG
*
8083190 TAAACACGTGAAAACCAAATC
65 TAAACACGTGAAAGCCAAATC
* * * *
8083211 TGCTATGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATATCTTTGATTTGC
1 TGCTAT-TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAA--T-C---ATCTTAGA-TTGC
* * *
8083276 TCTC--TG-ACAATAC-AGAGATGCCAAATC
58 T-TCAGTGTA-AACACGTGA-AAGCCAAATC
* * *
8083303 TGCTATT-TTCGATCTACTTTCTGACAATACAGAGACGCCAAATCATCTTAGATTCGCTTCAGCG
1 TGCTATTCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATT-GCTTCAGTG
8083367 TAAACACGTGAAAGCCAAATC
65 TAAACACGTGAAAGCCAAATC
* * * * * *
8083388 TGCTATATCTTCAATTTGCTCTATGACAATATAGAGATGCCGAATC
1 TGCTAT-TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC
8083434 TGCTACCTTC
Statistics
Matches: 177, Mismatches: 27, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
83 4 0.02
84 10 0.06
85 25 0.14
86 4 0.02
87 63 0.36
88 1 0.01
89 1 0.01
90 31 0.18
91 4 0.02
92 20 0.11
93 11 0.06
94 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (85 bp):
TGCTATTCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTGCTTCAGTGT
AAACACGTGAAAGCCAAATC
Found at i:8083239 original size:131 final size:132
Alignment explanation
Indices: 8083005--8083302 Score: 463
Period size: 131 Copynumber: 2.3 Consensus size: 132
8082995 TGCCAAATCT
8083005 GATCTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGA
1 GATCTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGA
* * *
8083070 AAGCCAAATCTACTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCGAATTTGC-TATCT
66 AAACCAAATCTACTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCATATCT
8083134 TC
131 TC
* * *
8083136 GATCTGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGA
1 GATCTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGA
* * **
8083201 AAACCAAATCTGCTATGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATATC
66 AAACCAAATCTACTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCAAATCTGC-ATATC
*
8083266 TTT
130 TTC
* *
8083269 GATTTGCTCTCTGACAATACAGAGATGCCAAATC
1 GATCTGCTCTCTGACAATACAAAGATGCCAAATC
8083303 TGCTATTTTC
Statistics
Matches: 151, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
131 114 0.75
133 37 0.25
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (132 bp):
GATCTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGA
AAACCAAATCTACTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCATATCT
TC
Found at i:8083372 original size:177 final size:177
Alignment explanation
Indices: 8083072--8083477 Score: 593
Period size: 177 Copynumber: 2.3 Consensus size: 177
8083062 ACACGTGAAA
* * * *
8083072 GCCAAATCTACTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCGAATTTGCTATCTTCG
1 GCCAAATCTGCTATATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* *
8083137 ATCTGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAA
66 ATCTACTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAA
* ** *
8083202 AACCAAATCTGCTATGTCTTTGATTTGCTCTCTGACAATACAGAGAT
131 AACCAAATCTGCTATATCTTCAATTTGCTCTATGACAATACAGAGAT
* *
8083249 GCCAAATCTGCTATATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATTTTCG
1 GCCAAATCTGCTATATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* *
8083314 ATCTACTTTCTGACAATACAGAGACGCCAAATCATCTTAGAT-TCGCTTCAGCGTAAACACGTGA
66 ATCTACTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCT-GCTTCAGCGTAAACACGTGA
* *
8083378 AAGCCAAATCTGCTATATCTTCAATTTGCTCTATGACAATATAGAGAT
130 AAACCAAATCTGCTATATCTTCAATTTGCTCTATGACAATACAGAGAT
* * * * *
8083426 GCCGAATCTGC--TACCTTCGATATGCTCTCTGACAATACAAAGACGCCAAATC
1 GCCAAATCTGCTATATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATC
8083478 ATCTTAGATC
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
175 36 0.17
176 1 0.00
177 169 0.82
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (177 bp):
GCCAAATCTGCTATATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
ATCTACTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAA
AACCAAATCTGCTATATCTTCAATTTGCTCTATGACAATACAGAGAT
Found at i:8083406 original size:131 final size:131
Alignment explanation
Indices: 8083249--8083655 Score: 595
Period size: 131 Copynumber: 3.1 Consensus size: 131
8083239 ATACAGAGAT
** *
8083249 GCCAAATCTGCTATATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATTTTCG
1 GCCAAATCTGCTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
*
8083314 ATCTACTTTCTGACAATACAGAGACGCCAAATCATCTTAGAT-TCGCTTCAGCGTAAACACGTGA
66 ATCTGCTTTCTGACAATACAGAGACGCCAAATCATCTTAGATCT-GCTTCAGCGTAAACACGTGA
8083378 AA
130 AA
* * * *
8083380 GCCAAATCTGCTATATCTTCAATTTGCTCTATGACAATATAGAGATGCCGAATCTGCTACCTTCG
1 GCCAAATCTGCTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * * * *
8083445 ATATGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGCATAAACACATGAA
66 ATCTGCTTTCTGACAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAA
8083510 A
131 A
* * **
8083511 GCCAAATCTGCTATATATTCAATTTGCTCACT-AGCAATACAGAGATGCCAAAAATGCTATCTTC
1 GCCAAATCTGCTATATCTTCAATTTGCTCTCTGA-CAATACAGAGATGCCAAATCTGCTATCTTC
8083575 GATCTGCTCTT-TGACAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTG
65 GATCTGCT-TTCTGACAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTG
8083639 AAA
129 AAA
* *
8083642 ACCAAATCTACTAT
1 GCCAAATCTGCTAT
8083656 GCTTTAGCCT
Statistics
Matches: 245, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
130 1 0.00
131 242 0.99
132 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (131 bp):
GCCAAATCTGCTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
ATCTGCTTTCTGACAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAA
A
Found at i:8083504 original size:308 final size:299
Alignment explanation
Indices: 8082951--8083608 Score: 971
Period size: 308 Copynumber: 2.2 Consensus size: 299
8082941 CACGTGAAAA
*
8082951 CCAAATCTGCTATGTCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGATCTGCTCTC
1 CCAAATCTGCTATATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGATCTGCTCTC
*
8083016 TGACAATACAAAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGAAAGCCAAATCT
66 TGACAATACAAAGACGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGAAAGCCAAATCT
* * * *
8083081 ACTATATCTTCAATTTGCTCTCTGACAATACAGAGATGCCGAATTTGCTATCTTCGATCTGCTCT
131 ACTATATCTTCAATTTGCTCTATGACAATACAGAGATGCCGAATCTGCTACCTTCGATATGCTCT
** *
8083146 CTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAACCAAATC
196 CTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGCATAAACACATGAAAACCAAATC
* * ** *
8083211 TGCTATGTCTTTGATTTGCTCTCT-GACAATACAGAGATG
261 TGCTATATATTCAATTTGCTCACTAG-CAATACAGAGATG
*
8083250 CCAAATCTGCTATATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATTTTCGA
1 CCAAATCTGCTATATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTG--A-TCT-G-
* *
8083315 TCTACTTTCTGACAATACAGAGACGCCAAATCATCTTAGATTCGCTTCAGCGTAAACACGTGAAA
61 -CT-C--TCTGACAATACAAAGACGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGAAA
* *
8083380 GCCAAATCTGCTATATCTTCAATTTGCTCTATGACAATATAGAGATGCCGAATCTGCTACCTTCG
122 GCCAAATCTACTATATCTTCAATTTGCTCTATGACAATACAGAGATGCCGAATCTGCTACCTTCG
8083445 ATATGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGCATAAACACATGAA
187 ATATGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGCATAAACACATGAA
*
8083510 AGCCAAATCTGCTATATATTCAATTTGCTCACTAGCAATACAGAGATG
252 AACCAAATCTGCTATATATTCAATTTGCTCACTAGCAATACAGAGATG
** * * * *
8083558 CCAAAAATGC--TATCTTCGATCTGCTCTTTGACAATACAGAGACGCCAAATC
1 CCAAATCTGCTATATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATC
8083609 ATCTTAGATC
Statistics
Matches: 323, Mismatches: 26, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
299 54 0.17
301 1 0.00
302 2 0.01
303 1 0.00
305 2 0.01
306 38 0.12
308 224 0.69
309 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (299 bp):
CCAAATCTGCTATATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGATCTGCTCTC
TGACAATACAAAGACGCCAAATCATCTTAGATCCGCTTCAGCGTAAACACGTGAAAGCCAAATCT
ACTATATCTTCAATTTGCTCTATGACAATACAGAGATGCCGAATCTGCTACCTTCGATATGCTCT
CTGACAATACAAAGACGCCAAATCATCTTAGATCTGCTTCAGCATAAACACATGAAAACCAAATC
TGCTATATATTCAATTTGCTCACTAGCAATACAGAGATG
Found at i:8091605 original size:17 final size:19
Alignment explanation
Indices: 8091583--8091617 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8091573 GATATAATAC
8091583 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
8091600 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
8091618 AATCAGAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:8091917 original size:23 final size:22
Alignment explanation
Indices: 8091874--8091931 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
8091864 AAAAGGTATC
* *
8091874 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
8091895 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
8091918 TGCATATCATATCT
1 TACAAATCATATCT
8091932 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:8091934 original size:19 final size:19
Alignment explanation
Indices: 8091910--8091982 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 19
8091900 AATCATATCT
8091910 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8091929 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
8091946 TGTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
* *
8091965 TCCAAGGTTGCATATCAT
1 TCTAAGATTGCATATCAT
8091983 TGAAGATTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
17 16 0.35
19 30 0.65
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8091945 original size:22 final size:19
Alignment explanation
Indices: 8091901--8091946 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
8091891 AGATTACAAA
8091901 ATCATATCTTCTAAGATTG
1 ATCATATCTTCTAAGATTG
8091920 --CATATCATATCTAAGATTG
1 ATCATATC-T-TCTAAGATTG
8091939 TATCATAT
1 -ATCATAT
8091947 GTAAGATTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 10 0.45
22 5 0.23
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (19 bp):
ATCATATCTTCTAAGATTG
Found at i:8092898 original size:49 final size:49
Alignment explanation
Indices: 8092822--8093065 Score: 258
Period size: 49 Copynumber: 4.9 Consensus size: 49
8092812 AGTCGAAGCT
* * * *
8092822 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATC
* *
8092871 AT-TCGGTACACGTAGTAGCCTGCACTTAGTAATACACACGTGACCTAACC
1 ATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AATC
* * * * *
8092921 ATCTGATACACGTAGTAGCTTGCACTTAATACTACACACGTGATCGAAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TC
* ** * * *
8092972 ATCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-C
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATC
* *
8093020 AATCTGGTACACGTAGTAGCCTGTATTTAGTACTACACACGTGACC
1 -ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
8093066 TCACAATAGC
Statistics
Matches: 157, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 76 0.48
50 44 0.28
51 36 0.23
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATC
Found at i:8099994 original size:51 final size:51
Alignment explanation
Indices: 8099843--8099996 Score: 263
Period size: 51 Copynumber: 3.0 Consensus size: 51
8099833 ACTTCTGATC
* * * *
8099843 AGTGACAAGTGATAAGTGGTAGCCTCAACTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
8099894 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
8099945 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
8099996 A
1 A
8099997 TTGATAAATG
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:8102989 original size:101 final size:101
Alignment explanation
Indices: 8102875--8103079 Score: 401
Period size: 101 Copynumber: 2.0 Consensus size: 101
8102865 TCATTAATTA
8102875 TAAATTAGTTACTAAAATATGTATACATATTTGACTCATACTTTATTTAATAACTAAAGCCCAAT
1 TAAATTAGTTACTAAAATATGTATACATATTTGACTCATACTTTATTTAATAACTAAAGCCCAAT
8102940 AAGCTTTAATCGAATTAAATCACTTTTAATTTAGGC
66 AAGCTTTAATCGAATTAAATCACTTTTAATTTAGGC
*
8102976 TAAATTAGTTACTAAAATATGTATACATATTTGACTCATACTTTATTTAATAACTAAAGCGCAAT
1 TAAATTAGTTACTAAAATATGTATACATATTTGACTCATACTTTATTTAATAACTAAAGCCCAAT
8103041 AAGCTTTAATCGAATTAAATCACTTTTAATTTAGGC
66 AAGCTTTAATCGAATTAAATCACTTTTAATTTAGGC
8103077 TAA
1 TAA
8103080 CACTTTATAA
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 103 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (101 bp):
TAAATTAGTTACTAAAATATGTATACATATTTGACTCATACTTTATTTAATAACTAAAGCCCAAT
AAGCTTTAATCGAATTAAATCACTTTTAATTTAGGC
Found at i:8105395 original size:46 final size:47
Alignment explanation
Indices: 8105308--8105399 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 47
8105298 AGACAACTAT
**
8105308 AAATAAATAATAATAAAAAGGTTTCAAATGAATAATGTATAAAACTTA
1 AAATAAATAATAATAAAAA-GTTTCAAATGAATAACATATAAAACTTA
*
8105356 AAATAAATAAT-ATAAAAA-TTTTAACATGAATAACATATAAAACT
1 AAATAAATAATAATAAAAAGTTTCAA-ATGAATAACATATAAAACT
8105400 GTTTAAATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
45 5 0.12
46 17 0.43
47 7 0.17
48 11 0.28
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (47 bp):
AAATAAATAATAATAAAAAGTTTCAAATGAATAACATATAAAACTTA
Found at i:8105461 original size:26 final size:25
Alignment explanation
Indices: 8105281--8105498 Score: 128
Period size: 26 Copynumber: 8.6 Consensus size: 25
8105271 TAAACAGTTC
* * * **
8105281 AAAATAAATAATAAATAAGACAACT
1 AAAATAAATAATATATAAAATATTT
8105306 ATAAATAAATAATA-ATAAAA-AGGTTT
1 A-AAATAAATAATATATAAAATA--TTT
* * * *
8105332 CAAATGAATAATGTAT-AAA-ACTT
1 AAAATAAATAATATATAAAATATTT
8105355 AAAATAAATAATATA-AAAAT-TTT
1 AAAATAAATAATATATAAAATATTT
* * * *
8105378 AACATGAATAACATATAAAACTGTTT
1 AAAATAAATAATATATAAAA-TATTT
* *
8105404 AAATTAAATACTATATATGAAA-ATTT
1 AAAATAAATA--ATATATAAAATATTT
** *
8105430 CGAATAGATAATATATAAAATAGTTT
1 AAAATAAATAATATATAAAATA-TTT
8105456 AAAATAAA-AAGTATATAAAAATATTTT
1 AAAATAAATAA-TATAT-AAAATA-TTT
8105483 AAAATAAATAATATAT
1 AAAATAAATAATATAT
8105499 GGAAAGTTCA
Statistics
Matches: 148, Mismatches: 29, Indels: 30
0.71 0.14 0.14
Matches are distributed among these distances:
23 31 0.21
24 14 0.09
25 24 0.16
26 47 0.32
27 22 0.15
28 10 0.07
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.32
Consensus pattern (25 bp):
AAAATAAATAATATATAAAATATTT
Found at i:8105484 original size:27 final size:28
Alignment explanation
Indices: 8105353--8105690 Score: 93
Period size: 26 Copynumber: 12.9 Consensus size: 28
8105343 TGTATAAAAC
8105353 TTAAAATAAAT-A-ATATA-AAAAT--T
1 TTAAAATAAATAATATATATAAAATAGT
* * * *
8105376 TTAACATGAATAACATATA-AAACT-GT
1 TTAAAATAAATAATATATATAAAATAGT
* * *
8105402 TTAAATTAAATACTATATATGAAA-A-T
1 TTAAAATAAATAATATATATAAAATAGT
** *
8105428 TTCGAATAGAT-A-ATATATAAAATAGT
1 TTAAAATAAATAATATATATAAAATAGT
*
8105454 TTAAAATAAA-AAGTATATA-AAAATATT
1 TTAAAATAAATAA-TATATATAAAATAGT
**
8105481 TTAAAATAAAT-A-ATATATGGAA-AGT
1 TTAAAATAAATAATATATATAAAATAGT
* * ** *
8105506 TCAAAGTAAATAATA-ATA-AAAGGAAT
1 TTAAAATAAATAATATATATAAAATAGT
** * *
8105532 TTAAAACGATTAACAT-T-TAAAATAGT
1 TTAAAATAAATAATATATATAAAATAGT
* * * *
8105558 AT-AACTAAATAACATATA-AAAA-AAT
1 TTAAAATAAATAATATATATAAAATAGT
** *
8105583 TTTGAATAGATAATATATGTATAAAATAGT
1 TTAAAATAAATAATATA--TATAAAATAGT
* ** *
8105613 TGAAAATAAA-AAGGTATCTAAGAAT--T
1 TTAAAATAAATAATATATATAA-AATAGT
* *
8105639 TTCAAAATAAATAAT-T-TGTATAATAGT
1 TT-AAAATAAATAATATATATAAAATAGT
* * *
8105666 TTAGAACAAATAATGTATATAAAAT
1 TTAAAATAAATAATATATATAAAAT
8105691 CTAAAAATGA
Statistics
Matches: 219, Mismatches: 65, Indels: 57
0.64 0.19 0.17
Matches are distributed among these distances:
23 9 0.04
24 10 0.05
25 42 0.19
26 86 0.39
27 38 0.17
28 18 0.08
29 8 0.04
30 8 0.04
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (28 bp):
TTAAAATAAATAATATATATAAAATAGT
Found at i:8109958 original size:11 final size:11
Alignment explanation
Indices: 8109942--8109969 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8109932 ATGAATAAAC
8109942 ACATTTATCAA
1 ACATTTATCAA
8109953 ACATTTATCAA
1 ACATTTATCAA
8109964 ACATTT
1 ACATTT
8109970 TCCATATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (11 bp):
ACATTTATCAA
Found at i:8110443 original size:47 final size:46
Alignment explanation
Indices: 8110341--8110463 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 46
8110331 TTCACATAAT
** * * * * *
8110341 GATGCCATGGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACC
* *
8110387 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACACC
8110434 GATGCCATATCCCAGATATGGTCTTATACG
1 GATGCCATATCCCAGATATGGTCTTATACG
8110464 GAAATCACTT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
46 26 0.39
47 41 0.61
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACC
Found at i:8110524 original size:31 final size:31
Alignment explanation
Indices: 8110481--8110629 Score: 212
Period size: 31 Copynumber: 4.8 Consensus size: 31
8110471 CTTGTCACTT
*
8110481 GTAGTCAG-AGCTACCACTATTCACTGATCAG
1 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
* *
8110512 GTGGTC-GAAGCTACCATTTTTCACTGATCAG
1 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
* *
8110543 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
8110574 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
*
8110605 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACT
8110630 TGTCATTTGT
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 2 0.02
31 105 0.98
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:8110704 original size:50 final size:51
Alignment explanation
Indices: 8110605--8110727 Score: 167
Period size: 50 Copynumber: 2.4 Consensus size: 51
8110595 CACTGATCAG
* * * * * *
8110605 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAACTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
8110656 GTAGCCGAAACTATCACTTATCACTT-TCACTTGTCCTTGATCAAATAAGT
1 GTAGCCGAAACTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
* *
8110706 GTAGTCGAAACTATTACTTATC
1 GTAGCCGAAACTATCACTTATC
8110728 TGTAATAGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 42 0.66
51 22 0.34
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAACTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
Found at i:8113599 original size:2 final size:2
Alignment explanation
Indices: 8113592--8113653 Score: 97
Period size: 2 Copynumber: 31.0 Consensus size: 2
8113582 GTATCATGAC
* *
8113592 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT CT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
8113634 CT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
8113654 GACTAGTCTC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8116836 original size:33 final size:33
Alignment explanation
Indices: 8116799--8116865 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
8116789 AGCCGAAAAG
8116799 ACAAGTGATTTGATTTTGCTTGTTGTTTGGTTT
1 ACAAGTGATTTGATTTTGCTTGTTGTTTGGTTT
8116832 ACAAGTGATTTGATTTTGCTTGTTGTTTGGTTT
1 ACAAGTGATTTGATTTTGCTTGTTGTTTGGTTT
8116865 A
1 A
8116866 TCTCTACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.16, C:0.06, G:0.24, T:0.54
Consensus pattern (33 bp):
ACAAGTGATTTGATTTTGCTTGTTGTTTGGTTT
Found at i:8118124 original size:19 final size:19
Alignment explanation
Indices: 8118099--8118189 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
8118089 ATAATCTTTA
*
8118099 ATGATATGCAATCTTGGAT
1 ATGATATGCAATCTTAGAT
*
8118118 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8118137 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8118154 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8118172 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
8118190 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8118139 original size:14 final size:15
Alignment explanation
Indices: 8118120--8118175 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
8118110 TCTTGGATGT
8118120 GATATG-CAATCTTA
1 GATATGACAATCTTA
8118134 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
8118151 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
8118169 GATATGA
1 GATATGA
8118176 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:8118168 original size:35 final size:37
Alignment explanation
Indices: 8118099--8118196 Score: 132
Period size: 35 Copynumber: 2.7 Consensus size: 37
8118089 ATAATCTTTA
* *
8118099 ATGATATGCAATCTTGGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
8118137 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
8118172 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
8118197 ATTTTGTAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
35 22 0.40
36 17 0.31
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:8118215 original size:22 final size:22
Alignment explanation
Indices: 8118099--8118212 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
8118089 ATAATCTTTA
8118099 ATGATATGCAATCTT-G--GAT
1 ATGATATGCAATCTTAGAAGAT
*
8118118 GTGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8118137 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8118154 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8118172 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
8118194 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
8118213 GATTTAATTT
Statistics
Matches: 83, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 31 0.37
22 8 0.10
23 12 0.14
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:8118513 original size:17 final size:19
Alignment explanation
Indices: 8118481--8118515 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8118471 TTTCCCTGAT
8118481 TTTTTTATATATATTTTAA
1 TTTTTTATATATATTTTAA
8118500 TTTTTTA-ATA-ATTTTA
1 TTTTTTATATATATTTTA
8118516 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTATATATATTTTAA
Found at i:8120665 original size:42 final size:42
Alignment explanation
Indices: 8120606--8120697 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
8120596 TGGCCCATAG
* ** *
8120606 GCCCATTTCAATATCACATGCAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
8120648 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
8120690 GCCCATTT
1 GCCCATTT
8120698 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:8120873 original size:25 final size:25
Alignment explanation
Indices: 8120845--8120914 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
8120835 CTCTTTTAAT
8120845 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
8120870 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
8120895 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
8120915 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:8121804 original size:26 final size:27
Alignment explanation
Indices: 8121712--8121790 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 27
8121702 GGACGTATTC
* * **
8121712 GTCATTTTACCATACAAAGGCTTTACA
1 GTCACTTTACCCTACAGGGGCTTTACA
8121739 GTCACTTTACCCTACAGGGG-TTTACA
1 GTCACTTTACCCTACAGGGGCTTTACA
8121765 GTCACTTTACCCTACAGGGGCTTTAC
1 GTCACTTTACCCTACAGGGGCTTTAC
8121791 GGTCTTTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 26 0.55
27 21 0.45
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACA
Found at i:8121886 original size:27 final size:27
Alignment explanation
Indices: 8121856--8121963 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
8121846 GTAAATCTAC
8121856 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
8121883 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
8121909 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
8121939 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
8121964 ACACATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:8122016 original size:36 final size:36
Alignment explanation
Indices: 8121969--8122039 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
8121959 ATTTTACACA
**
8121969 TTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTG
1 TTGAGGGTATTTCGACAATTTCACAAACCAGTGGTG
8122005 TTGAGGGTATTTCGACAATTTCACAAACCAGTGGT
1 TTGAGGGTATTTCGACAATTTCACAAACCAGTGGT
8122040 ATTTTGGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (36 bp):
TTGAGGGTATTTCGACAATTTCACAAACCAGTGGTG
Found at i:8122455 original size:27 final size:27
Alignment explanation
Indices: 8122110--8122444 Score: 456
Period size: 27 Copynumber: 12.4 Consensus size: 27
8122100 GTAATTTCAT
* * *
8122110 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
** * *
8122137 AA-CTGAGGGTAAAATAATAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
8122164 AATCGAGGGTAAAATTGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
8122191 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
8122218 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
8122245 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
8122272 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
8122299 AATTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
8122326 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
8122353 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
8122380 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
** *
8122407 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
8122434 AATTGAGGGTA
1 AATCGAGGGTA
8122445 CTTTGGTAAT
Statistics
Matches: 278, Mismatches: 28, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
26 1 0.00
27 276 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:8126990 original size:44 final size:44
Alignment explanation
Indices: 8126864--8126990 Score: 200
Period size: 44 Copynumber: 2.9 Consensus size: 44
8126854 GATCTAAGAT
* *
8126864 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
8126908 GATTTGGCATTTCTGTATTGTCAGAGGGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
8126952 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGA
8126991 GAGCGAATTG
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 75 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:8126993 original size:14 final size:14
Alignment explanation
Indices: 8126974--8127009 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8126964 CTGTATTGTC
8126974 AGAGAGCAAATTGA
1 AGAGAGCAAATTGA
*
8126988 AGAGAGCGAATTGA
1 AGAGAGCAAATTGA
*
8127002 AGATAGCA
1 AGAGAGCA
8127010 GATTTGGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.08, G:0.31, T:0.14
Consensus pattern (14 bp):
AGAGAGCAAATTGA
Found at i:8127844 original size:131 final size:131
Alignment explanation
Indices: 8127000--8127813 Score: 1279
Period size: 131 Copynumber: 6.2 Consensus size: 131
8126990 AGAGCGAATT
*
8127000 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAAAGCAAATTGAAGATATAGCAGATTTGGCT
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
* * * * *
8127065 TTCACGTGTTTACGCTGAAGTATATCTAAGATGATTTGGCGTCTCTATATTGTTAGAGAGCAGAT
66 TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
8127130 C
131 C
8127131 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
* * *
8127196 TTCACATGTTTACGCTGAAGTAGATCTAAGATGATTTGGCGTCTCTATATTGTTAGAGAGCAGAT
66 TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
8127261 C
131 C
*
8127262 GAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
* *
8127327 TTCACATGTTTACGCTGAAGCGGATCTAAGATGATTTGGCGTCTCTGTATTATCAGAGAGCAGAT
66 TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
8127392 C
131 C
* * * * *
8127393 GAAGATAGCACATTTGGCATCTCTGTATTGTCAAAGAGCAAATCGAAGATATAGTAGATTTGGTT
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
* *
8127458 TTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGTGTCTCTGTATTGTCAGAGAGCAGAT
66 TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
*
8127523 T
131 C
* ** *
8127524 GAAGATAGTAGATTCAGCATCTTTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
* * * *
8127589 TTCACGTGTTTACGCTGAAGCGGATCTAAGATGATTTGGTGTCTCTGTATTGTTAGAGAGCAGAT
66 TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
8127654 C
131 C
* * *
8127655 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGACATAGCAGATTTGGTT
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
* * * * * *
8127720 TTCACATGTTTACACTGAAGCAGATCTAAGATGATTTGGCATCTTTGTACTGTCAGAGAACAAAT
66 TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
8127785 C
131 C
*
8127786 GAAGA-AACAGATTTGGCATCTCTGTATT
1 GAAGATAGCAGATTTGGCATCTCTGTATT
8127814 AGACGGGGAG
Statistics
Matches: 633, Mismatches: 50, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
130 22 0.03
131 611 0.97
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (131 bp):
GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCT
TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
C
Found at i:8127892 original size:78 final size:78
Alignment explanation
Indices: 8127795--8127967 Score: 276
Period size: 78 Copynumber: 2.2 Consensus size: 78
8127785 CGAAGAAACA
* *
8127795 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT-GACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAGAT-TGGACCTTCATTGA
*
8127859 AGCAGATCCAAGAT
65 AGCAAATCCAAGAT
* * *
8127873 GATTTGGCATCTCTGTATTAGATGGGGAGTAGATCAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAGATTGGACCTTCATTGAA
8127938 GCAAATCCAAGAT
66 GCAAATCCAAGAT
8127951 GATTTGGCATCTCTGTA
1 GATTTGGCATCTCTGTA
8127968 CTGTCAGAGA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
77 1 0.01
78 87 0.99
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAGATTGGACCTTCATTGAA
GCAAATCCAAGAT
Found at i:8128082 original size:198 final size:199
Alignment explanation
Indices: 8127735--8128165 Score: 650
Period size: 198 Copynumber: 2.2 Consensus size: 199
8127725 ATGTTTACAC
* * *
8127735 TGAAGCAGATCTAAGATGATTTGGCATCTTTGTACTGTCAGAGAACAAATCGAAGAAACAGATTT
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATTT
** * * *
8127800 GGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAAGCAGA
66 GGCATCTCCATATTAGACGGAGAGCAAATCAAAGACACAGCAGATCTGACCTTCATTGAAGCAGA
* * * *
8127865 TCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGTAGATCAAAGACATAACAGAT-TGGACC
131 TCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAAATCT-GACC
8127929 TTCAT
195 TTCAT
*
8127934 TGAAGCAAATCCAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAG-TTT
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATTT
* * * * *
8127998 GGCATCTCCATATTCGACGGAGAGTAAATCAAAGACATAGTAGATCTGACCTTCATTGAAGCATA
66 GGCATCTCCATATTAGACGGAGAGCAAATCAAAGACACAGCAGATCTGACCTTCATTGAAGCAGA
* * *
8128063 TCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAAATCTGATCT
131 TCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAAATCTGACCT
8128128 TCAT
196 TCAT
8128132 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
8128166 TTAGACGGGG
Statistics
Matches: 209, Mismatches: 22, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
198 151 0.72
199 58 0.28
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (199 bp):
TGAAGCAGATCCAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATTT
GGCATCTCCATATTAGACGGAGAGCAAATCAAAGACACAGCAGATCTGACCTTCATTGAAGCAGA
TCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAAATCTGACCT
TCAT
Found at i:8128124 original size:78 final size:78
Alignment explanation
Indices: 8127995--8128287 Score: 408
Period size: 78 Copynumber: 3.8 Consensus size: 78
8127985 AAAGAAACAG
** * * * * * *
8127995 TTTGGCATCTCCATATTCGACGGAGAGTAAATCAAAGACATAGTAGATCTGACCTTCATTGAAGC
1 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGC
*
8128060 ATATCCAAGATGA
66 AGATCCAAGATGA
* * *
8128073 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAAATCTGATCTTCATTGAAGC
1 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGC
8128138 AGATCCAAGATGA
66 AGATCCAAGATGA
* * *
8128151 TTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAGACATAACAGAT-TGGACCTTCATTGAAA
1 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAAG
*
8128215 CAGATACAAGATGA
65 CAGATCCAAGATGA
* *
8128229 TTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCAT
1 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
8128288 GTGTTTACAT
Statistics
Matches: 190, Mismatches: 23, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
77 1 0.01
78 188 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (78 bp):
TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGC
AGATCCAAGATGA
Found at i:8128382 original size:45 final size:46
Alignment explanation
Indices: 8128318--8128500 Score: 214
Period size: 45 Copynumber: 4.1 Consensus size: 46
8128308 CCAAGATGAT
*
8128318 AGATTTGGCATCTTTGTATTAGACGGGGAGCAAATCAG-AGATAAC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAAGATAAC
* * *
8128363 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGAT-TGAAGA-AGC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAAGATAAC
* * * *
8128407 AAAATTGGCGTCTCTGTATTAGATGGGGAGCAAATC-GAAGATAAC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAAGATAAC
* * * * *
8128452 AGATTTGGCGTCTCTGTATTAAACGGGAAGCAGATCA-AAGATAGC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAAGATAAC
8128497 AGAT
1 AGAT
8128501 ATCGCCTTCC
Statistics
Matches: 117, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
44 38 0.32
45 79 0.68
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (46 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAAGATAAC
Found at i:8128435 original size:89 final size:89
Alignment explanation
Indices: 8128322--8128486 Score: 260
Period size: 89 Copynumber: 1.9 Consensus size: 89
8128312 GATGATAGAT
* *
8128322 TTGGCATCTTTGTATTAGACGGGGAGCAAATC-AGAGATAACAGATTTGGCATCTCTGTATTAGA
1 TTGGCATCTCTGTATTAGACGGGGAGCAAATCGA-AGATAACAGATTTGGCATCTCTGTATTAAA
*
8128386 CGGGGAGCAGATTGAAGAAGCAAAA
65 CGGGAAGCAGATTGAAGAAGCAAAA
* * *
8128411 TTGGCGTCTCTGTATTAGATGGGGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTAAAC
1 TTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAAAC
8128476 GGGAAGCAGAT
66 GGGAAGCAGAT
8128487 CAAAGATAGC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
89 68 0.99
90 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (89 bp):
TTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAAAC
GGGAAGCAGATTGAAGAAGCAAAA
Found at i:8128883 original size:14 final size:15
Alignment explanation
Indices: 8128864--8128919 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
8128854 TCTTGGATGT
8128864 GATATG-CAATCTTA
1 GATATGACAATCTTA
8128878 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
8128895 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
8128913 GATATGA
1 GATATGA
8128920 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:8128892 original size:17 final size:17
Alignment explanation
Indices: 8128870--8128933 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
8128860 ATGTGATATG
8128870 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
8128887 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
8128905 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
8128922 TGCAATCTTAGA
1 --CAATCTTAGA
8128934 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.38
18 16 0.38
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:8128912 original size:35 final size:37
Alignment explanation
Indices: 8128843--8128940 Score: 123
Period size: 35 Copynumber: 2.7 Consensus size: 37
8128833 ATAATCTTCA
* * *
8128843 ATGATATGTAATCTTGGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
8128881 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
8128916 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
8128941 ATTTTGTAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
35 22 0.41
36 16 0.30
37 10 0.19
38 6 0.11
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:8128940 original size:17 final size:19
Alignment explanation
Indices: 8128843--8128933 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
8128833 ATAATCTTCA
* *
8128843 ATGATATGTAATCTTGGAT
1 ATGATATGCAATCTTAGAT
*
8128862 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8128881 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8128898 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8128916 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
8128934 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8128959 original size:22 final size:22
Alignment explanation
Indices: 8128843--8128956 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
8128833 ATAATCTTCA
*
8128843 ATGATATGTAATCTT-G--GAT
1 ATGATATGCAATCTTAGAAGAT
*
8128862 GTGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8128881 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8128898 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8128916 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
8128938 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
8128957 GATTTAATTT
Statistics
Matches: 82, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
17 16 0.20
18 16 0.20
19 30 0.37
22 8 0.10
23 12 0.15
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:8129245 original size:17 final size:17
Alignment explanation
Indices: 8129221--8129255 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8129211 CATTTCCCTG
*
8129221 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
8129239 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
8129256 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:8130037 original size:3 final size:3
Alignment explanation
Indices: 8130024--8130073 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
8130014 TATATTGTTC
*
8130024 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8130072 TT
1 TT
8130074 TATTTTTGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8130233 original size:20 final size:20
Alignment explanation
Indices: 8130195--8130233 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8130185 TGGGCCCAGA
* *
8130195 AATAAGTCCAAAACAAAAAT
1 AATAAATCCAAAAAAAAAAT
8130215 AATAAATCCAAAAAAAAAA
1 AATAAATCCAAAAAAAAAA
8130234 CCGAAGTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.13, G:0.03, T:0.13
Consensus pattern (20 bp):
AATAAATCCAAAAAAAAAAT
Found at i:8130393 original size:14 final size:16
Alignment explanation
Indices: 8130362--8130431 Score: 59
Period size: 17 Copynumber: 4.0 Consensus size: 16
8130352 AATGATTTGC
*
8130362 AATCTTAGATGTGATA
1 AATCTTAGATATGATA
8130378 TGTAATCTTAGATATGATA
1 ---AATCTTAGATATGATA
*
8130397 CAATCTTAGATATGATTGC
1 -AATCTTAGATATGA-T-A
*
8130416 AATATTAGATATGATA
1 AATCTTAGATATGATA
8130432 TGCAATCTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
17 15 0.34
18 14 0.32
19 15 0.34
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (16 bp):
AATCTTAGATATGATA
Found at i:8130450 original size:17 final size:19
Alignment explanation
Indices: 8130353--8130443 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
8130343 ATAATCTTCA
*
8130353 ATGATTTGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
8130372 GTGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8130391 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
8130408 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
8130426 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
8130444 AGATATGATT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
17 15 0.24
18 15 0.24
19 32 0.52
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8130450 original size:22 final size:23
Alignment explanation
Indices: 8130422--8130466 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8130412 TTGCAATATT
8130422 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
8130444 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
8130467 TATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:8130758 original size:18 final size:17
Alignment explanation
Indices: 8130735--8130768 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8130725 TTTCCCTGAT
*
8130735 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
8130753 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
8130769 GTATTATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:8136535 original size:8 final size:9
Alignment explanation
Indices: 8136521--8136563 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
8136511 GAGGCAGCCA
8136521 AAAAAAATG
1 AAAAAAATG
8136530 AAAAAAATG
1 AAAAAAATG
**
8136539 AAAAAATACA
1 AAAAAA-ATG
*
8136549 AAAAAAACG
1 AAAAAAATG
8136558 AAAAAA
1 AAAAAA
8136564 GATCGTGGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
9 23 0.77
10 7 0.23
ACGTcount: A:0.81, C:0.05, G:0.07, T:0.07
Consensus pattern (9 bp):
AAAAAAATG
Found at i:8136544 original size:19 final size:19
Alignment explanation
Indices: 8136520--8136563 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8136510 AGAGGCAGCC
** *
8136520 AAAAAAAATGAAAAAAATG
1 AAAAAAAACAAAAAAAACG
*
8136539 AAAAAATACAAAAAAAACG
1 AAAAAAAACAAAAAAAACG
8136558 AAAAAA
1 AAAAAA
8136564 GATCGTGGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.82, C:0.05, G:0.07, T:0.07
Consensus pattern (19 bp):
AAAAAAAACAAAAAAAACG
Found at i:8138099 original size:50 final size:50
Alignment explanation
Indices: 8138021--8138136 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 50
8138011 CACTAATCTC
* * * * *** *
8138021 ATCTCCCTAAAGTCGCAGTGGAGCAGATTAAAGTTATCACGGTGAATCTT
1 ATCTCCCTGAAGTTGCTGAGGAGCAGATTAAAGTTATCACGACAAACCTT
* * *
8138071 ATCTTCCTGAAGTTGCTGAGGAGCAGATTGAAGTTATCATGACAAACCTT
1 ATCTCCCTGAAGTTGCTGAGGAGCAGATTAAAGTTATCACGACAAACCTT
8138121 ATCTCCCTGAAGTTGC
1 ATCTCCCTGAAGTTGC
8138137 AGTGAAGCAT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (50 bp):
ATCTCCCTGAAGTTGCTGAGGAGCAGATTAAAGTTATCACGACAAACCTT
Found at i:8138178 original size:44 final size:45
Alignment explanation
Indices: 8138112--8138419 Score: 222
Period size: 44 Copynumber: 6.9 Consensus size: 45
8138102 AGTTATCATG
* *
8138112 ACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCATG-TTG-AGGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCA-GAATGAAGGTT
* * * * *
8138156 ACAAGTCTTACCTCCCTAAAGTTGTAGTGGAGCAGAATGAAGGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGAATGAAGGTT
* * *
8138201 ACAAATCTTATCTCTCTGAAGTTGCAGAGGAGCA-AATTGAA-GTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGAA-TGAAGGTT
* * * * * *
8138245 ATAGATCTTATCTCCCTGAAGTTACAGTGGAGTAG-ATCGAA-GAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGAAT-GAAGGTT
** * * * *
8138289 AGCAAATCTTATCTATCTGGAGTTGCAGT-AGAGCAG-ATTAAAGCT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGA-AGCAGAATGAAGGTT
* * * * **
8138334 ATAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAA-GTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGAATGAAGGTT
* *
8138378 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAA-CAGACTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGAATGAAG
8138420 ATAGCAAATC
Statistics
Matches: 205, Mismatches: 47, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
43 2 0.01
44 131 0.64
45 72 0.35
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGAATGAAGGTT
Found at i:8138226 original size:89 final size:85
Alignment explanation
Indices: 8138112--8138406 Score: 270
Period size: 89 Copynumber: 3.3 Consensus size: 85
8138102 AGTTATCATG
* * * *
8138112 ACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCATGTTGAGGTTACAAGTCTTACCTCCCTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCA-GTTGAAGTTA-AAGTCTTATCTCCCTGAAG
*
8138177 TTGTAGTGGAGCAGAATGAAGGTT
64 TTGCAGTGGAGCAG-ATGAA-GTT
* * * * *
8138201 ACAAATCTTATCTCTCTGAAGTTGCAGAGGAGCAAATTGAAGTTATAGATCTTATCTCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGC-AGTTGAAGTTAAAG-TCTTATCTCCCTGAAG
* * *
8138266 TTACAGTGGAGTAGATCGAAGAT
64 TTGCAGTGGAGCAGAT-GAAGTT
** * * *
8138289 AGCAAATCTTATCTATCTGGAGTTGCAGT-AGAGCAGATTAAAGCTATAAA-CCTTATCTCCCTG
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGA-AGCAG-TTGAAG-T-TAAAGTCTTATCTCCCTG
* *
8138352 AAGTTGCAATGGAGCAGGTTGAAGTT
61 AAGTTGCAGTGGAGCA-GATGAAGTT
*
8138378 ACAAGTCTTATCTCCCTGAAGTTGCAGTG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTG
8138407 GAACAGACTG
Statistics
Matches: 166, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
88 31 0.19
89 128 0.77
90 4 0.02
91 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (85 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATGAAGTT
Found at i:8138353 original size:133 final size:133
Alignment explanation
Indices: 8138200--8138473 Score: 365
Period size: 133 Copynumber: 2.1 Consensus size: 133
8138190 GAATGAAGGT
* * *
8138200 TACAAATCTTATCTCTCTGAAGTTGCAGA-GGAGCAAATTGAAGTTA-TAGATCTTATCTCCCTG
1 TACAAACCTTATCTCCCTGAAGTTGCA-ATGGAGCAAATTGAAGTTACAAG-TCTTATCTCCCTG
** * * *
8138263 AAGTTACAGTGGAGTAGA-TCGAAGATAGCAAATCTTATCTATCTGGAGTTGCAGTAGAGCAGAT
64 AAGTTACAGTGGAACAGACT-GAAGATAGCAAATCTTATCTATCTGAAGTTACAATAGAGCAGAT
8138327 TAAAGC
128 TAAAGC
* **
8138333 TATAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 TACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAAATTGAAGTTACAAGTCTTATCTCCCTGAA
* * * *
8138398 GTTGCAGTGGAACAGACTGAAGATAGCAAATCTTGTCTTTTTGAAGTTACAATAGAGCAGATTAA
66 GTTACAGTGGAACAGACTGAAGATAGCAAATCTTATCTATCTGAAGTTACAATAGAGCAGATTAA
8138463 AGC
131 AGC
8138466 TACAAACC
1 TACAAACC
8138474 ACAAGTCCTA
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
132 1 0.01
133 118 0.97
134 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (133 bp):
TACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAAATTGAAGTTACAAGTCTTATCTCCCTGAA
GTTACAGTGGAACAGACTGAAGATAGCAAATCTTATCTATCTGAAGTTACAATAGAGCAGATTAA
AGC
Found at i:8138597 original size:44 final size:44
Alignment explanation
Indices: 8138549--8138632 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
8138539 CTGAAGTTGT
* *
8138549 AGTGGAGCAGATTGAAGCCACTAA-TCTTATCTCCTTGAAGGTAC
1 AGTGGAGCAGATTAAAGCCAC-AAGTCTAATCTCCTTGAAGGTAC
* *
8138593 AGTGGAGTAGATTAAAGCTACAAGTCTAATCTCCTTGAAG
1 AGTGGAGCAGATTAAAGCCACAAGTCTAATCTCCTTGAAG
8138633 TTGCAATGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
AGTGGAGCAGATTAAAGCCACAAGTCTAATCTCCTTGAAGGTAC
Found at i:8140342 original size:3 final size:3
Alignment explanation
Indices: 8140336--8140380 Score: 67
Period size: 3 Copynumber: 15.3 Consensus size: 3
8140326 TCATTACTAC
8140336 TAT TAT T-T TAT CTAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8140380 T
1 T
8140381 TATTTTATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.10
3 32 0.82
4 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8141408 original size:8 final size:8
Alignment explanation
Indices: 8141397--8141428 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
8141387 AGAAATAGAG
8141397 TTTTAAAA
1 TTTTAAAA
*
8141405 TTTTAAAT
1 TTTTAAAA
8141413 TTTTAAAA
1 TTTTAAAA
8141421 TTTTAAAA
1 TTTTAAAA
8141429 AGAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
TTTTAAAA
Found at i:8141418 original size:16 final size:16
Alignment explanation
Indices: 8141397--8141427 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8141387 AGAAATAGAG
8141397 TTTTAAAATTTTAAAT
1 TTTTAAAATTTTAAAT
8141413 TTTTAAAATTTTAAA
1 TTTTAAAATTTTAAA
8141428 AAGAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTAAAATTTTAAAT
Found at i:8145519 original size:22 final size:21
Alignment explanation
Indices: 8145494--8145544 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 21
8145484 AGGGAGGAAA
8145494 ATAAATAT-TTTTTAATATCAAT
1 ATAAATATATTTTTAAT-T-AAT
8145516 ATAAAT-TATTTTTAATTAAT
1 ATAAATATATTTTTAATTAAT
8145536 ATAAATATA
1 ATAAATATA
8145545 AATATTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.33
21 4 0.15
22 14 0.52
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAATATATTTTTAATTAAT
Found at i:8145552 original size:22 final size:22
Alignment explanation
Indices: 8145494--8145553 Score: 57
Period size: 26 Copynumber: 2.5 Consensus size: 22
8145484 AGGGAGGAAA
** *
8145494 ATAAATATTTTTTAATATCAAT
1 ATAAATATTAATTAATATAAAT
8145516 ATAAATTATTTTTAATTAATATAAAT
1 ATAAA-TA---TTAATTAATATAAAT
8145542 ATAAATATTAAT
1 ATAAATATTAAT
8145554 ATAGGCATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
22 10 0.32
23 2 0.06
25 2 0.06
26 17 0.55
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATATTAATTAATATAAAT
Found at i:8148056 original size:39 final size:39
Alignment explanation
Indices: 8148002--8148147 Score: 256
Period size: 39 Copynumber: 3.7 Consensus size: 39
8147992 TTCCAACACA
*
8148002 AATGCCTTCGGGACTTAGCCCAGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
8148041 AATGCTTTCGGGACTTAGCTCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
8148080 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
8148119 AATACCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
8148148 ATCTCACACA
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 101 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:8153839 original size:25 final size:25
Alignment explanation
Indices: 8153811--8153859 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
8153801 ATATATATCA
8153811 TAAA-ATAGCACATAAAAGAAATAAT
1 TAAACATAGCACATAAAA-AAATAAT
* *
8153836 TAAACATAGCATATGAAAAAATAA
1 TAAACATAGCACATAAAAAAATAA
8153860 AACTATGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.20
Consensus pattern (25 bp):
TAAACATAGCACATAAAAAAATAAT
Found at i:8154363 original size:22 final size:21
Alignment explanation
Indices: 8154333--8154379 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
8154323 TACAAATTAA
8154333 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8154355 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8154376 ATCT
1 ATCT
8154380 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8154385 original size:19 final size:19
Alignment explanation
Indices: 8154350--8154428 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
8154340 AGATTACAAG
8154350 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8154371 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8154388 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8154407 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8154426 ATC
1 ATC
8154429 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8154405 original size:36 final size:38
Alignment explanation
Indices: 8154350--8154422 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
8154340 AGATTACAAG
8154350 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
8154388 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
8154423 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:8154437 original size:36 final size:35
Alignment explanation
Indices: 8154351--8154438 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
8154341 GATTACAAGA
8154351 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
8154387 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
8154423 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
8154439 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:8154838 original size:45 final size:45
Alignment explanation
Indices: 8154783--8154894 Score: 154
Period size: 45 Copynumber: 2.5 Consensus size: 45
8154773 GGAAGGCGAT
*
8154783 ATCTGCTATCTTTGATCTGCTCCCCATCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGACGCCAA
* ** *
8154828 ATCTGTTATCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGACGCCAA
* *
8154873 ATTTGCT-TCTTCAATCTGCTCC
1 ATCTGCTATCTTCGATCTGCTCC
8154895 TTGCAAACTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 14 0.24
45 45 0.76
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.34
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGACGCCAA
Found at i:8156402 original size:7 final size:7
Alignment explanation
Indices: 8156392--8156439 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
8156382 TTGTGTTTGT
*
8156392 GGTTCAG
1 GGTTTAG
8156399 GGTTTAG
1 GGTTTAG
8156406 GGTTTAG
1 GGTTTAG
8156413 GGTTTAG
1 GGTTTAG
8156420 GGTTTAG
1 GGTTTAG
*
8156427 GGTTCAG
1 GGTTTAG
8156434 GGTTTA
1 GGTTTA
8156440 AGGTCTCAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.15, C:0.04, G:0.42, T:0.40
Consensus pattern (7 bp):
GGTTTAG
Found at i:8156409 original size:14 final size:14
Alignment explanation
Indices: 8156392--8156468 Score: 77
Period size: 14 Copynumber: 5.5 Consensus size: 14
8156382 TTGTGTTTGT
* *
8156392 GGTTCAGGGTTTAG
1 GGTTTAGGGTTCAG
*
8156406 GGTTTAGGGTTTAG
1 GGTTTAGGGTTCAG
8156420 GGTTTAGGGTTCAG
1 GGTTTAGGGTTCAG
*
8156434 GGTTTAAGGTCTCA-
1 GGTTTAGGGT-TCAG
*
8156448 GGTTTAGGATTTCA-
1 GGTTTAGG-GTTCAG
8156462 GGTTTAG
1 GGTTTAG
8156469 AGTATAATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
14 52 0.93
15 4 0.07
ACGTcount: A:0.17, C:0.06, G:0.38, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGTTCAG
Found at i:8156513 original size:15 final size:15
Alignment explanation
Indices: 8156493--8156524 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8156483 TTTAATTTAG
8156493 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
8156508 AAGATAAATATATAT
1 AAGATAAATATAAAT
8156523 AA
1 AA
8156525 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:8159113 original size:27 final size:26
Alignment explanation
Indices: 8159076--8159190 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
8159066 AGCATGGCTG
* *
8159076 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
8159102 CCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
8159130 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
8159157 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
8159184 CCAGAAC
1 CCAGAAC
8159191 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:8159135 original size:54 final size:54
Alignment explanation
Indices: 8159076--8159190 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
8159066 AGCATGGCTG
* *
8159076 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
** * * *
8159130 CCAGAACAGATATATGTGGTAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
8159184 CCAGAAC
1 CCAGAAC
8159191 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:8160836 original size:26 final size:26
Alignment explanation
Indices: 8160798--8160929 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
8160788 CATGAAATTC
*
8160798 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
8160824 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
8160850 TTATCAT----CATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
8160872 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
8160898 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
8160924 TTATCA
1 TTATCA
8160930 ATTTGTATCA
Statistics
Matches: 100, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
22 22 0.22
26 78 0.78
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:8160873 original size:48 final size:49
Alignment explanation
Indices: 8160808--8160929 Score: 192
Period size: 48 Copynumber: 2.4 Consensus size: 49
8160798 TTATCATGAA
8160808 ACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCAT
1 ACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCAT
*
8160857 -CATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAT
1 ACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCAT
*
8160905 GGAACATTTACCTAACCTATTATCA
1 ---ACATTTACCTAACCCATTATCA
8160930 ATTTGTATCA
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
48 47 0.70
52 20 0.30
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (49 bp):
ACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCAT
Found at i:8162204 original size:39 final size:39
Alignment explanation
Indices: 8162145--8162222 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
8162135 AGGTAGAGAA
* *
8162145 CTTAAATTTGTTATTTTGCATGATTATTTGAGATCTGCT
1 CTTAAATTTGTTATTCTGCATGATTATTTGAGATATGCT
8162184 CTTAAATTTGTTATTCTGCATGATTATTTGAGATATGCT
1 CTTAAATTTGTTATTCTGCATGATTATTTGAGATATGCT
8162223 TCTGTCAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.50
Consensus pattern (39 bp):
CTTAAATTTGTTATTCTGCATGATTATTTGAGATATGCT
Found at i:8162212 original size:20 final size:20
Alignment explanation
Indices: 8162150--8162213 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
8162140 GAGAACTTAA
*
8162150 ATTTGTTATTTTGCATGATT
1 ATTTGTTATTCTGCATGATT
** *
8162170 ATTTGAGA-TCTGC-T-CTT
1 ATTTGTTATTCTGCATGATT
8162187 AAATTTGTTATTCTGCATGATT
1 --ATTTGTTATTCTGCATGATT
8162209 ATTTG
1 ATTTG
8162214 AGATATGCTT
Statistics
Matches: 32, Mismatches: 7, Indels: 10
0.65 0.14 0.20
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 10 0.31
20 16 0.50
21 1 0.03
22 2 0.06
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.53
Consensus pattern (20 bp):
ATTTGTTATTCTGCATGATT
Found at i:8163321 original size:7 final size:7
Alignment explanation
Indices: 8163309--8163338 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
8163299 TAAGTAACAG
8163309 TTGCTTT
1 TTGCTTT
8163316 TTGCTTT
1 TTGCTTT
8163323 TTGCTTT
1 TTGCTTT
8163330 TTGCTTT
1 TTGCTTT
8163337 TT
1 TT
8163339 TAATCTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.13, G:0.13, T:0.73
Consensus pattern (7 bp):
TTGCTTT
Found at i:8164156 original size:64 final size:64
Alignment explanation
Indices: 8164087--8164220 Score: 225
Period size: 64 Copynumber: 2.1 Consensus size: 64
8164077 TAATATTTCT
*
8164087 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGT-CTCATCTAATAGACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCT-ATCTAATAGACAA
* *
8164151 ATATTTCTATCACGATTTTTGATAAATTTATTTATTAATATAATATGTCCTATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCTATCTAATAGACAA
8164215 ATATTT
1 ATATTT
8164221 AATAAAATAT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
64 64 0.97
65 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.47
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCTATCTAATAGACAA
Found at i:8164233 original size:64 final size:64
Alignment explanation
Indices: 8164100--8164234 Score: 177
Period size: 64 Copynumber: 2.1 Consensus size: 64
8164090 TTTCTATCAC
* * * *
8164100 GATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATAGACAAATATTTCTATCAC
1 GATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATAGACAAATATTTATATAAA
* *
8164164 GATTTTTGATAAATTTATTTATTAATATAATATGTC-CTATCTAATATACAAATATTTA-ATAAA
1 GATTTTTAATAAATTTATTTATTAATATAATATGTCTC-ATCTAATAGACAAATATTTATATAAA
8164227 -ATATTTTA
1 GAT-TTTTA
8164235 TATAGTTTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
62 2 0.03
63 8 0.13
64 52 0.84
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (64 bp):
GATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATAGACAAATATTTATATAAA
Found at i:8164295 original size:24 final size:24
Alignment explanation
Indices: 8164268--8164338 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
8164258 ATTATTATTG
* *
8164268 AAATATTCTTTTCCGTTTTATCAC
1 AAATATTATTATCCGTTTTATCAC
* *
8164292 AAATATTATTGTCTGTTTTATCAC
1 AAATATTATTATCCGTTTTATCAC
*
8164316 AAATATTATCATCCGTTTTATCA
1 AAATATTATTATCCGTTTTATCA
8164339 TTTAAGTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.06, T:0.48
Consensus pattern (24 bp):
AAATATTATTATCCGTTTTATCAC
Found at i:8165006 original size:240 final size:240
Alignment explanation
Indices: 8164380--8165083 Score: 1345
Period size: 241 Copynumber: 2.9 Consensus size: 240
8164370 ATACCTTTTT
8164380 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAAT
1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAAT
*
8164445 TACAACAATAGTTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
8164510 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
8164575 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAA
196 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAA
8164620 AAGGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAA
1 AA-GTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAA
8164685 TTACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAG
65 TTACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAG
*
8164750 GCTGGAAACTTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAA
130 GCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAA
* *
8164815 CAATGCCATGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAA
195 CAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAA
8164861 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAAT
1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAAT
8164926 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
* *
8164991 CTGGAAACCTGACGGGTTGCCCTATATCGAGCTGTAAGATATAATGGATCTTCCCTAGGTGTAAC
131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
8165056 AACGCCACGTATGATGAATCTTAAAAAA
196 AACGCCACGTATGATGAATCTTAAAAAA
8165084 CAACTTACAT
Statistics
Matches: 454, Mismatches: 9, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
240 218 0.48
241 236 0.52
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (240 bp):
AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAAT
TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAA
Found at i:8165102 original size:9 final size:9
Alignment explanation
Indices: 8165085--8165141 Score: 78
Period size: 9 Copynumber: 6.3 Consensus size: 9
8165075 CTTAAAAAAC
8165085 AACTTACAT
1 AACTTACAT
*
8165094 AACTCACAT
1 AACTTACAT
8165103 AACTTACAT
1 AACTTACAT
*
8165112 AATTTACAT
1 AACTTACAT
*
8165121 AACTCACAT
1 AACTTACAT
*
8165130 AACGTACAT
1 AACTTACAT
8165139 AAC
1 AAC
8165142 AACTTACGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.28
Consensus pattern (9 bp):
AACTTACAT
Found at i:8165126 original size:27 final size:27
Alignment explanation
Indices: 8165088--8165140 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
8165078 AAAAAACAAC
*
8165088 TTACATAACTCACATAACTTACATAAT
1 TTACATAACTCACATAACGTACATAAT
8165115 TTACATAACTCACATAACGTACATAA
1 TTACATAACTCACATAACGTACATAA
8165141 CAACTTACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (27 bp):
TTACATAACTCACATAACGTACATAAT
Found at i:8170567 original size:20 final size:20
Alignment explanation
Indices: 8170542--8170579 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8170532 GTTTATTCGC
*
8170542 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
8170562 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
8170580 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:8172245 original size:28 final size:28
Alignment explanation
Indices: 8172213--8172281 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
8172203 GCGTAGATCA
8172213 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
8172241 CGAAATTACCTCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
8172269 CGATA-TACCCCTA
1 CGAAATTACCCCTA
8172282 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:8177623 original size:12 final size:12
Alignment explanation
Indices: 8177606--8177630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8177596 CTTAGGGTTG
8177606 TTTTTTCCTCTC
1 TTTTTTCCTCTC
8177618 TTTTTTCCTCTC
1 TTTTTTCCTCTC
8177630 T
1 T
8177631 AGCCGAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTTCCTCTC
Found at i:8178745 original size:28 final size:28
Alignment explanation
Indices: 8178713--8178781 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
8178703 GCGTAGATCA
8178713 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
8178741 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
8178769 CGATA-TACCCCTA
1 CGAAATTACCCCTA
8178782 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:8185053 original size:20 final size:20
Alignment explanation
Indices: 8185028--8185065 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8185018 GTTTATTCGC
*
8185028 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
8185048 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
8185066 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:8186724 original size:28 final size:28
Alignment explanation
Indices: 8186692--8186760 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
8186682 GCGTAGATCA
8186692 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
8186720 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
8186748 CGATA-TACCCCTA
1 CGAAATTACCCCTA
8186761 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:8188851 original size:64 final size:64
Alignment explanation
Indices: 8188725--8188852 Score: 175
Period size: 64 Copynumber: 2.0 Consensus size: 64
8188715 AAGCATCCCA
* * * * * **
8188725 ATCGGTATTGATCCTATATATGTTGCGGACATGCCGCAGCTCTTTGTAAGTGTCTTGTTATATG
1 ATCGGTATTGATCCTACATATATTGCGGACATACCGCAGCTCTTTATAAGTGTCCTAATATATG
* *
8188789 ATCGGTATTGATCCTACATATATTGCGGACATACCGCAGTTCTTTATGAGTGTCCTAATATATG
1 ATCGGTATTGATCCTACATATATTGCGGACATACCGCAGCTCTTTATAAGTGTCCTAATATATG
8188853 GCTCTTTGTA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (64 bp):
ATCGGTATTGATCCTACATATATTGCGGACATACCGCAGCTCTTTATAAGTGTCCTAATATATG
Found at i:8192080 original size:46 final size:46
Alignment explanation
Indices: 8192018--8192291 Score: 325
Period size: 46 Copynumber: 6.0 Consensus size: 46
8192008 TTATCTTTGA
* * * *
8192018 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* ** ** *
8192064 CATGTTGCCATGGTGTCTTTCAACCATAATCTTGTTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
8192110 CACGTTTCCATGGTATCTTTCAATCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
8192156 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
8192202 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
8192248 CATGCTGCCATGGTAACTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
8192292 TTCAGAAAAC
Statistics
Matches: 199, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 4 0.02
46 195 0.98
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:8192243 original size:21 final size:21
Alignment explanation
Indices: 8192219--8192290 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
8192209 CCATGGTATC
8192219 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* *
8192240 TTTCATATCATGCTGCCATGGTA-AC-
1 TTTCA-ACCATG--GTC-T--TACACA
8192265 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
8192286 TTTCA
1 TTTCA
8192291 TTTCAGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 2 0.05
21 11 0.28
22 7 0.18
24 7 0.18
25 6 0.15
26 2 0.05
27 2 0.05
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.36
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:8192276 original size:138 final size:138
Alignment explanation
Indices: 8192023--8192291 Score: 376
Period size: 138 Copynumber: 1.9 Consensus size: 138
8192013 TTTGACATGA
* * * *
8192023 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTGTCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
*** * * * * **
8192088 CATAATCTTGTTCATTTCATATCACGTTTCCATGGTATCTTTCAATCATGGTCTTATTCATTTCA
66 CATAATCTTACACATTTCATATCACGCTGCCATGGTAACTTTCAACCATGGTCTTACACATTTCA
8192153 TGTCACGC
131 TGTCACGC
* *
8192161 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
** *
8192226 CATGGTCTTACACATTTCATATCATGCTGCCATGGTAACTTTCAACCATGGTCTTACACATTTCA
66 CATAATCTTACACATTTCATATCACGCTGCCATGGTAACTTTCAACCATGGTCTTACACATTTCA
8192291 T
131 T
8192292 TTCAGAAAAC
Statistics
Matches: 113, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
138 113 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATAATCTTACACATTTCATATCACGCTGCCATGGTAACTTTCAACCATGGTCTTACACATTTCA
TGTCACGC
Found at i:8194291 original size:26 final size:26
Alignment explanation
Indices: 8194254--8194389 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
8194244 TGATACAAAT
* * *
8194254 TGATAATAGGTTAGGTAAATGTTCCT
1 TGATAATGGGTTAGGTAAATGTTTCA
8194280 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
8194306 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8194332 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8194358 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8194384 TGATAA
1 TGATAA
8194390 GAATATCATG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:8196421 original size:137 final size:137
Alignment explanation
Indices: 8196175--8196461 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
8196165 GAGTAGTCTC
8196175 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
8196240 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
8196305 ACTGTTA
131 ACTGCTA
8196312 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
8196377 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
8196442 ACTGCTA
131 ACTGCTA
**
8196449 CCTGAATGGGCTT
1 CCCAAATGGGCTT
8196462 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGCTA
Found at i:8201680 original size:3 final size:3
Alignment explanation
Indices: 8201674--8201736 Score: 67
Period size: 3 Copynumber: 20.3 Consensus size: 3
8201664 TACGTAGATG
*
8201674 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA CATTA ATA A-A GATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA ATA -ATA
8201721 A-A AGTA ATA ATA ATA A
1 ATA A-TA ATA ATA ATA A
8201737 AGATGAAAGA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
2 3 0.06
3 43 0.83
4 4 0.08
5 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8205612 original size:13 final size:13
Alignment explanation
Indices: 8205596--8205620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8205586 TTCTTGATAA
8205596 TTTTTATTTGTTT
1 TTTTTATTTGTTT
8205609 TTTTTATTTGTT
1 TTTTTATTTGTT
8205621 GATTTAACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (13 bp):
TTTTTATTTGTTT
Found at i:8207107 original size:131 final size:132
Alignment explanation
Indices: 8206867--8207132 Score: 374
Period size: 131 Copynumber: 2.0 Consensus size: 132
8206857 ATTATTCATT
**
8206867 TAAAAACCCTTTAAAACGAAGGCGATGTTCGATATTTGGCAATTCGCGGAATCATGCCCTATCGT
1 TAAAAACCCTTTAAAACGAAGGAAATGTTCGATATTTGGCAATTCGCGGAATCATGCCCTATCGT
* * * * *
8206932 ACTGGGTTGCAATTTCTCGTTTGCTCCAAATAATCAAATGTCCCTTTAGAATTTCATTCATGTTT
66 ACTGGGTTGCAATTTCTCATTTGCTCAAAACAATCAAATATCCCTTTAGAATTTCACTCATGTTT
8206997 TC
131 TC
* * * *
8206999 TAAAAACTCTTTGAAACGAAGGAAATGTTCGATATTTGGCAATTC-TGGAATCGTGCCCTATCGT
1 TAAAAACCCTTTAAAACGAAGGAAATGTTCGATATTTGGCAATTCGCGGAATCATGCCCTATCGT
* * * *
8207063 GCTGGGTTGCAATTTC-CTATTTGCTCAAAACAATCGAATATCCCTTTGGAATTTCACTCGTGTT
66 ACTGGGTTGCAATTTCTC-ATTTGCTCAAAACAATCAAATATCCCTTTAGAATTTCACTCATGTT
8207127 TTC
130 TTC
8207130 TAA
1 TAA
8207133 GGCGAGGCAA
Statistics
Matches: 118, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
130 1 0.01
131 76 0.64
132 41 0.35
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (132 bp):
TAAAAACCCTTTAAAACGAAGGAAATGTTCGATATTTGGCAATTCGCGGAATCATGCCCTATCGT
ACTGGGTTGCAATTTCTCATTTGCTCAAAACAATCAAATATCCCTTTAGAATTTCACTCATGTTT
TC
Found at i:8211314 original size:6 final size:6
Alignment explanation
Indices: 8211278--8211312 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
8211268 GCTAATTTCT
* *
8211278 TTCCTA TTCCTA TTCCTA TTCCTA TACCTT TTCCT
1 TTCCTA TTCCTA TTCCTA TTCCTA TTCCTA TTCCT
8211313 TTCTTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.14, C:0.34, G:0.00, T:0.51
Consensus pattern (6 bp):
TTCCTA
Found at i:8212576 original size:5 final size:5
Alignment explanation
Indices: 8212566--8212591 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8212556 ATAAATGAGA
8212566 AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT A
8212592 TAGTAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:8223630 original size:26 final size:26
Alignment explanation
Indices: 8223580--8223630 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
8223570 AAATAGATAC
*
8223580 AGAAACAAAAACAAAAAGGGCAACAA
1 AGAAACAAAAACAAAAAGGGAAACAA
*
8223606 AGAAACAAAAGCAGAAAA-GGAAACA
1 AGAAACAAAAACA-AAAAGGGAAACA
8223631 GTAGCAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.69, C:0.14, G:0.18, T:0.00
Consensus pattern (26 bp):
AGAAACAAAAACAAAAAGGGAAACAA
Found at i:8223836 original size:21 final size:21
Alignment explanation
Indices: 8223812--8223854 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8223802 TTTCTACTGC
8223812 TTTTAAATTTATGTTTCATTT
1 TTTTAAATTTATGTTTCATTT
* * *
8223833 TTTTTACTTTATTTTTCATTT
1 TTTTAAATTTATGTTTCATTT
8223854 T
1 T
8223855 ATTTTTTACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTAAATTTATGTTTCATTT
Found at i:8228497 original size:19 final size:19
Alignment explanation
Indices: 8228470--8228508 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8228460 AAAAATTTAT
*
8228470 CAAATTAATTCAATTCATA
1 CAAAATAATTCAATTCATA
*
8228489 CAAAATAATTCAGTTCATA
1 CAAAATAATTCAATTCATA
8228508 C
1 C
8228509 TGTCGAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.33
Consensus pattern (19 bp):
CAAAATAATTCAATTCATA
Found at i:8232056 original size:44 final size:45
Alignment explanation
Indices: 8231957--8232056 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 45
8231947 CTGCAACTTT
** *
8231957 AGAGAGATAAGATCTTCAATCTTCAGTTTGCTTCCTTGCTACCTC
1 AGAGAGATAAGATCTTCAATCTTCAACTTGCTTCCTTACTACCTC
* *
8232002 AG-GAAAATAAGA-CTTCAATCTTTAACTTGC-TCTCTTACTACCTC
1 AGAG-AGATAAGATCTTCAATCTTCAACTTGCTTC-CTTACTACCTC
8232046 AGAGAGATAAG
1 AGAGAGATAAG
8232057 GTTTGGGGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
43 2 0.04
44 34 0.74
45 10 0.22
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (45 bp):
AGAGAGATAAGATCTTCAATCTTCAACTTGCTTCCTTACTACCTC
Found at i:8232236 original size:147 final size:147
Alignment explanation
Indices: 8231968--8232249 Score: 413
Period size: 147 Copynumber: 1.9 Consensus size: 147
8231958 GAGAGATAAG
* * * * * *
8231968 ATCTTCAATCTTCAGTTTGCTTCCTTGCTACCTCAGGAAAATAAGACTTCAATCTTTAACTTGCT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAAATAAGACTTCAATATTCAACCTACT
** * *
8232033 CTCTTACTACCTCAGAGAGATAAGGTTTGGGGTTTAAATCTACTCCATTGTCGATACATAGAGAT
66 CTCTTACTACCTCAGAGAGATAAGGTCAGGGGCTAAAATCTACTCCATTGTCGATACATAGAGAT
8232098 AAGATTTATCCCTTCCA
131 AAGATTTATCCCTTCCA
*
8232115 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTTCAATATTCAACCTACT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAAATAAGACTTCAATATTCAACCTACT
* * * *
8232180 CTCTTGCTACCTCAGAGAGATAAGGTCAGTGGCTAAAATCTGCTCCATTG-CTGATACATGGAGA
66 CTCTTACTACCTCAGAGAGATAAGGTCAGGGGCTAAAATCTACTCCATTGTC-GATACATAGAGA
8232244 TAAGAT
130 TAAGAT
8232250 CTGCCTTCTT
Statistics
Matches: 119, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
146 1 0.01
147 118 0.99
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (147 bp):
ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAAATAAGACTTCAATATTCAACCTACT
CTCTTACTACCTCAGAGAGATAAGGTCAGGGGCTAAAATCTACTCCATTGTCGATACATAGAGAT
AAGATTTATCCCTTCCA
Found at i:8232504 original size:411 final size:410
Alignment explanation
Indices: 8231890--8232678 Score: 1137
Period size: 411 Copynumber: 1.9 Consensus size: 410
8231880 GCTAGTGGTA
* *
8231890 AAATTTGCTCCATTGCTGATACATGAAGATAAGATTCACCATCTTTGATCTACCCTACTGCAACT
1 AAATCTGCTCCATTGCCGATACATGAAGATAAGATTCACCATCTTTGATCTACCCTACT-CAACT
* *
8231955 TTAGAGAGATAAGATCTTCAATCTTCAGTTTGCTTCCTTGCTACCTCAGGAAAATAAGACTTCAA
65 TTAGAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTAACTCAGGAAAATAAGACTTCAA
* * * * *
8232020 TCTTTAACTTGCTCTCTTACTACCTCAGAGAGATAAGGTTTGGGGTTTAAATCTACTCCATTGTC
130 TCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTTGAGGCTTAAATCTACTCCATTGCC
*
8232085 GATACATAGAGATAAGATTTATCC-CTTCCAATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTC
195 GATACATAGAGATAAGATTT-GCCTCTTCCAATCTTCAATCTTCAGTCTGCTTCCTTGCTACC-C
*
8232149 AAG-AAGATAAGACTTCAATATTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGG-TCAGTGG
258 AAGAAAGATAAGAC-TCAATATTCAACCTACTCTCTTGCAACCTCAGAGAGATAAGGCT-AGTGG
* * * *
8232212 CTAAAATCTGCTCCATTGCTGATACATGGAGATAAGA-TCTGCCTTCTTCGATCTGCTCTGCTAC
321 -TAAAATCTGCTCCATTGCCGATACATGGAAATAAGATTC-ACCATCTTCGATCTGCTCTGCTAC
8232276 AACTTCAAGGAAATGAATCTTGGGCTT
384 AACTTCAAGGAAATGAATCTTGGGCTT
* * * *
8232303 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCC-TCTTTCGATCTGCTCC-GCT-AAC
1 AAATCTGCTCCATTGCCGATACATGAAGATAAGATTCACCATCTTT-GATCTAC-CCTACTCAAC
* * *
8232365 GTTTAGGGAGATAAGATCTTCAAT-TCTCAGTCTGTTTCCTTGCTAACTCAGGAAGATAAGAC-T
64 -TTTAGAGAGATAAGATCTTCAATCT-TCAGTCTGCTTCCTTGCTAACTCAGGAAAATAAGACTT
* *
8232428 CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTTTGAGGCTTAAATCTGCTCCATT
127 CAATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTTGAGGCTTAAATCTACTCCATT
* * *
8232493 GCCGATACATAGAGATAAGATTTGCCTTTTCCAATCTTCAATCTTCAGTTTGCTTTCTTGCTACC
192 GCCGATACATAGAGATAAGATTTGCCTCTTCCAATCTTCAATCTTCAGTCTGCTTCCTTGCTACC
* * * *
8232558 CCAGAAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCAACCTCAGAGAGATAAGGCTAGTGGT
257 CAAGAAAGATAAGACTCAATATTCAACCTACTCTCTTGCAACCTCAGAGAGATAAGGCTAGTGGT
8232623 AAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCACCATCTTCGATCTGCTC
322 AAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCACCATCTTCGATCTGCTC
8232679 CACTGCAACT
Statistics
Matches: 337, Mismatches: 31, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
409 50 0.15
410 50 0.15
411 132 0.39
412 59 0.18
413 44 0.13
414 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (410 bp):
AAATCTGCTCCATTGCCGATACATGAAGATAAGATTCACCATCTTTGATCTACCCTACTCAACTT
TAGAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTAACTCAGGAAAATAAGACTTCAAT
CTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTTGAGGCTTAAATCTACTCCATTGCCG
ATACATAGAGATAAGATTTGCCTCTTCCAATCTTCAATCTTCAGTCTGCTTCCTTGCTACCCAAG
AAAGATAAGACTCAATATTCAACCTACTCTCTTGCAACCTCAGAGAGATAAGGCTAGTGGTAAAA
TCTGCTCCATTGCCGATACATGGAAATAAGATTCACCATCTTCGATCTGCTCTGCTACAACTTCA
AGGAAATGAATCTTGGGCTT
Found at i:8233127 original size:64 final size:63
Alignment explanation
Indices: 8233023--8233214 Score: 249
Period size: 64 Copynumber: 3.0 Consensus size: 63
8233013 TTCATGTATC
* * *
8233023 ATGCTTATGCCAAATAATTAGGATGTTATGATCAAAATGAATTAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGAT-ATATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * * *
8233087 ATTCTTATGTCAGATAATTAGGATACTATGATCAAAATGAATCAACTGCACCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATA-TATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* ** *
8233151 CTGCTTATGTCAAATAATTAGGATGATATGATTGAAATGAATCAAATGCTCCTAACTGGATGTG
1 ATGCTTATGTCAAATAATTAGGAT-ATATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
8233215 TTATGAATGA
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
64 108 0.99
65 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (63 bp):
ATGCTTATGTCAAATAATTAGGATATATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:8237076 original size:25 final size:26
Alignment explanation
Indices: 8236967--8237126 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
8236957 CATGAAATTC
*
8236967 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
8236993 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
8237019 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
8237045 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCCA
*
8237070 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
8237096 TTATCAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
8237121 TTATCA
1 TTATCA
8237127 ATTTGTATCA
Statistics
Matches: 131, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
25 49 0.37
26 82 0.63
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Done.