Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 335 of 438
Found at i:104878414 original size:54 final size:54
Alignment explanation
Indices: 104878356--104878586 Score: 203
Period size: 54 Copynumber: 4.3 Consensus size: 54
104878346 TTACTTTTTG
* * * *
104878356 GATTTTACGAATCTCGCGGTCCGTTGATTTATGATCACGACCTTCTACTTACGA
1 GATTTTACGAATCTCGCGGTCTGCTAATTTACGATCACGACCTTCTACTTACGA
* * * ** * * * *
104878410 GATTTTACGAATCTCGTGATTTGCTAATTTTAAAATCATGATCTTCTACTAACAA
1 GATTTTACGAATCTCGCGGTCTGCTAA-TTTACGATCACGACCTTCTACTTACGA
* * ** *
104878465 GATTTTACAAATATCGCGGTCTGCTAATTTACGATCATTACCTTCTACCTAC-A
1 GATTTTACGAATCTCGCGGTCTGCTAATTTACGATCACGACCTTCTACTTACGA
* * * * * * *
104878518 GGATTTTATGAACCTTGCAGTCTGCTTATTTACGATCACAACCTTCTACTTACGT
1 -GATTTTACGAATCTCGCGGTCTGCTAATTTACGATCACGACCTTCTACTTACGA
*
104878573 GCTTTTACGAATCT
1 GATTTTACGAATCT
104878587 AGGTGTGTTA
Statistics
Matches: 137, Mismatches: 37, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
53 1 0.01
54 93 0.68
55 43 0.31
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (54 bp):
GATTTTACGAATCTCGCGGTCTGCTAATTTACGATCACGACCTTCTACTTACGA
Found at i:104879015 original size:54 final size:54
Alignment explanation
Indices: 104878888--104879022 Score: 144
Period size: 54 Copynumber: 2.5 Consensus size: 54
104878878 CATGGTTCGT
* * *
104878888 TGATTTTTAATGACAACCTTTTACTTACGAGATTTTACGAATCTCACGGTCTAC
1 TGATTTTTAATGACAACCTTTTATTTACGAGATTTTACGAATCTCACGATCCAC
* ** * * * *
104878942 TAATTGATGATGACAACCTTTTATTTACGGGATTTTATGAATCTCACGATCCGC
1 TGATTTTTAATGACAACCTTTTATTTACGAGATTTTACGAATCTCACGATCCAC
* * * *
104878996 TGATTTTTTATCACGACCTTCTATTTA
1 TGATTTTTAATGACAACCTTTTATTTA
104879023 TGTGATTTAC
Statistics
Matches: 64, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (54 bp):
TGATTTTTAATGACAACCTTTTATTTACGAGATTTTACGAATCTCACGATCCAC
Found at i:104879097 original size:54 final size:54
Alignment explanation
Indices: 104879027--104879176 Score: 167
Period size: 54 Copynumber: 2.8 Consensus size: 54
104879017 TATTTATGTG
* * * *
104879027 ATTTACAATCACAACCTTTTACTTACGGGATTTTATGAATCTCGTGATCCGCTA
1 ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCTCGCGATCCGCTA
* * * *
104879081 ATTTAAAATAATAACCTTCTACTTACAGGGA-TTTATGAATCTCGCGGTCTGTTA
1 ATTTAAAATAACAACCTTCTACTTAC-GGGATTTTATGAATCTCGCGATCCGCTA
* * * * *
104879135 ATTTATAATCACAACCTTCTAATTACGTGATTTTACGAATCT
1 ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCT
104879177 AGGCATGTTG
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.04
54 73 0.91
55 4 0.05
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (54 bp):
ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCTCGCGATCCGCTA
Found at i:104879146 original size:137 final size:137
Alignment explanation
Indices: 104878900--104879167 Score: 304
Period size: 137 Copynumber: 2.0 Consensus size: 137
104878890 ATTTTTAATG
* * ** * *
104878900 ACAACCTTTTACTTACGAGATTTTACGAATCTCACGGTCTACTAATTGATGATGACAACCTTTTA
1 ACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCCACTAATTGAAAATAACAACCTTCTA
* * * * * * *
104878965 TTTACGGGATTTTATGAATCTCACGATCCGCTGATTTTTTATCACGACCTTCTATTTATGTGATT
66 CTTACGGGATTTTATGAATCTCACGATCCGCTAATTTATAATCACAACCTTCTAATTACGTGATT
104879030 TACAATC
131 TACAATC
* * ** * * *
104879037 ACAACCTTTTACTTACGGGATTTTATGAATCTCGTGATCCGCTAATTTAAAATAATAACCTTCTA
1 ACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCCACTAATTGAAAATAACAACCTTCTA
* * * *
104879102 CTTACAGGGA-TTTATGAATCTCGCGGTCTGTTAATTTATAATCACAACCTTCTAATTACGTGAT
66 CTTAC-GGGATTTTATGAATCTCACGATCCGCTAATTTATAATCACAACCTTCTAATTACGTGAT
104879166 TT
130 TT
104879168 TACGAATCTA
Statistics
Matches: 106, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
137 102 0.96
138 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (137 bp):
ACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCCACTAATTGAAAATAACAACCTTCTA
CTTACGGGATTTTATGAATCTCACGATCCGCTAATTTATAATCACAACCTTCTAATTACGTGATT
TACAATC
Found at i:104879563 original size:54 final size:54
Alignment explanation
Indices: 104879505--104879640 Score: 148
Period size: 54 Copynumber: 2.5 Consensus size: 54
104879495 TCATTGTGTA
* ** * *
104879505 CTGATTTACAATAACGACCTTTTACTTACAGGATTTTATGAATCTCA-GGGTTCG
1 CTGATTTACGATAACGACCTTTTACTTACAGGATTCAACGAATCTCATGGGAT-G
* * * * *
104879559 CTGATTTATGGTAACAACCTTTTATTTACGGGATTCAACGAATCTCATGGGATG
1 CTGATTTACGATAACGACCTTTTACTTACAGGATTCAACGAATCTCATGGGATG
* *
104879613 TTGATTTACGATCACGACCTTTTACTTA
1 CTGATTTACGATAACGACCTTTTACTTA
104879641 TGGGGATATA
Statistics
Matches: 65, Mismatches: 16, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
54 61 0.94
55 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (54 bp):
CTGATTTACGATAACGACCTTTTACTTACAGGATTCAACGAATCTCATGGGATG
Found at i:104880183 original size:54 final size:53
Alignment explanation
Indices: 104880125--104880251 Score: 116
Period size: 54 Copynumber: 2.4 Consensus size: 53
104880115 CGATCTGCCA
* * * * *
104880125 ATTTATGATGACGACCTTTTACTTATGCGATTTTACGAAT-CACATGGTCCACAG
1 ATTTACGATAACGACCTTCTAATAATG-GATTTTACGAATACA-ATGGTCCACAG
* *
104880179 ATTTACGATAATGACCTTCTAATAATGGATTTTATGAATACAATGGT-CACTA-
1 ATTTACGATAACGACCTTCTAATAATGGATTTTACGAATACAATGGTCCAC-AG
* **
104880231 ATTTACAATCGCGACCTTCTA
1 ATTTACGATAACGACCTTCTA
104880252 CTTACGTGTT
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
52 20 0.33
53 17 0.28
54 23 0.38
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (53 bp):
ATTTACGATAACGACCTTCTAATAATGGATTTTACGAATACAATGGTCCACAG
Found at i:104880667 original size:54 final size:54
Alignment explanation
Indices: 104880581--104880711 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
104880571 GTTTCAGTTT
* * * ** *
104880581 ATTTACAATCATGACCTTTTACTTTCTGGATTTTA-AGAATCTCAGGGTTCGTTG
1 ATTTACAATCATGATCTTTTACTATATGGATTTTACA-AATCTCACAGTTCGCTG
* *
104880635 ATTTACAATCATGATCTTTTAC-ATATGAGATTTTACAAATCTCTCAGTTTGCTG
1 ATTTACAATCATGATCTTTTACTATATG-GATTTTACAAATCTCACAGTTCGCTG
* *
104880689 ATTTACAATGATGATCATTTACT
1 ATTTACAATCATGATCTTTTACT
104880712 TACAGGATTT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 3 0.05
54 60 0.94
55 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (54 bp):
ATTTACAATCATGATCTTTTACTATATGGATTTTACAAATCTCACAGTTCGCTG
Found at i:104881045 original size:24 final size:24
Alignment explanation
Indices: 104881008--104881071 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
104880998 AACCTTCTTC
104881008 TTATTAGATTTTATGAATCTCACAGT
1 TTATT-GA-TTTATGAATCTCACAGT
*
104881034 TTATTGATTTATGAATCTCGCAGT
1 TTATTGATTTATGAATCTCACAGT
**
104881058 CCATTGATTTATGA
1 TTATTGATTTATGA
104881072 TAACGACCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 28 0.80
25 2 0.06
26 5 0.14
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.45
Consensus pattern (24 bp):
TTATTGATTTATGAATCTCACAGT
Found at i:104881566 original size:54 final size:54
Alignment explanation
Indices: 104881474--104881650 Score: 185
Period size: 54 Copynumber: 3.3 Consensus size: 54
104881464 GCACGGTCCA
* * *
104881474 CTAATTTACGATGATGACCTTTTACTTACGAGG-TTTTATGAATCTCGCGGTCAG
1 CTAATTTACGATCATGACCTTTTACTTATG-GGATTTTATGAATCTCGCGGTCTG
* * * * * * *
104881528 CTCATTTACAATTATGACCTTTTACTTATGGGACTTTATAAATCTCACGATCTG
1 CTAATTTACGATCATGACCTTTTACTTATGGGATTTTATGAATCTCGCGGTCTG
* * * * *
104881582 CTAATTTATGGATCATGACCTTTTACTTTTTGGATTTTACGAATATCGCGGTCTG
1 CTAATTTA-CGATCATGACCTTTTACTTATGGGATTTTATGAATCTCGCGGTCTG
*
104881637 CTGATTTACGATCA
1 CTAATTTACGATCA
104881651 CAACCTTCTA
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
53 2 0.02
54 54 0.55
55 42 0.43
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (54 bp):
CTAATTTACGATCATGACCTTTTACTTATGGGATTTTATGAATCTCGCGGTCTG
Found at i:104881637 original size:55 final size:55
Alignment explanation
Indices: 104881541--104881644 Score: 127
Period size: 55 Copynumber: 1.9 Consensus size: 55
104881531 ATTTACAATT
* *
104881541 ATGACCTTTTACTTATGGGACTTTATAAATCTCACGATCTGCTAATTTATGGATC
1 ATGACCTTTTACTTATGGGACTTTACAAATATCACGATCTGCTAATTTATGGATC
* * * * * * *
104881596 ATGACCTTTTACTTTTTGGATTTTACGAATATCGCGGTCTGCTGATTTA
1 ATGACCTTTTACTTATGGGACTTTACAAATATCACGATCTGCTAATTTA
104881645 CGATCACAAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 40 1.00
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.42
Consensus pattern (55 bp):
ATGACCTTTTACTTATGGGACTTTACAAATATCACGATCTGCTAATTTATGGATC
Found at i:104881696 original size:54 final size:54
Alignment explanation
Indices: 104881638--104881789 Score: 164
Period size: 54 Copynumber: 2.8 Consensus size: 54
104881628 CGCGGTCTGC
104881638 TGATTTACGATCACAACCTTCTAATTACATGATTTTACGAATCTCGT-GTTCCAT
1 TGATTTACGATCACAACCTTCTAATTACATGATTTTACGAATCTCGTGGTT-CAT
* ** * * * *
104881692 TGATTTACAAT-ATTGACCTTCTAGTTACAAGATTTTACAAATCACGTGGTTCAT
1 TGATTTACGATCA-CAACCTTCTAATTACATGATTTTACGAATCTCGTGGTTCAT
* * * * *
104881746 TGATTTACGATCACAAACTTCTACTTACGTTACTTTACGAATCT
1 TGATTTACGATCACAACCTTCTAATTACATGATTTTACGAATCT
104881790 AAAAGTGTTG
Statistics
Matches: 77, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 72 0.94
55 4 0.05
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (54 bp):
TGATTTACGATCACAACCTTCTAATTACATGATTTTACGAATCTCGTGGTTCAT
Found at i:104886009 original size:214 final size:213
Alignment explanation
Indices: 104885615--104886036 Score: 702
Period size: 214 Copynumber: 2.0 Consensus size: 213
104885605 GGGCCATATG
* * *
104885615 TCTGTTACGGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCATGAGAATGTGTTTCGAC
1 TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATATGTTTCGAC
* *
104885680 TAAAGCTATAATGTGTAAGATATTTGAATATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
66 TAAAGCTATAATGTGTAAGATATTTAAAAATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
* *
104885745 TCTGGAAATCAAAAAGTTTGTGGTACTCATTGAGCAAGCATGTAAAGCTGAAGAACTCGGGAAAG
131 TCTAGAAATCAAAAAGTTTGTGGTACTCATCGAGCAAGCATGTAAAGCTGAAGAACTCGGGAAA-
104885810 A-GAAAAGAAAAGCGAATT
195 ATGAAAAGAAAAGCGAATT
* *
104885828 TCTGTTACAGAATATGAACGAGAATTTGTTAAATTAAGTTAATATGCACGAGAATATGTTTCGAC
1 TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATATGTTTCGAC
*
104885893 TGAAGCTATAATGTGTAAGATATTTAAAAATGGCTTGAATGAAGATATTCGATTGTTAGTTGGAA
66 TAAAGCTATAATGTGTAAGATATTTAAAAATGG-TTGAATGAAGATATTCGATTGTTAGTTGGAA
* * *
104885958 TTCTAGAAATCAAAGAGTTTGTGGTACTCGTCGAGCGAGCATGTAAAGCTGAAGAACTCGGGAAA
130 TTCTAGAAATCAAAAAGTTTGTGGTACTCATCGAGCAAGCATGTAAAGCTGAAGAACTCGGGAAA
104886023 ATGAAAAGAAAAGC
195 ATGAAAAGAAAAGC
104886037 AGATTTTGAA
Statistics
Matches: 194, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
213 91 0.47
214 103 0.53
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (213 bp):
TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATATGTTTCGAC
TAAAGCTATAATGTGTAAGATATTTAAAAATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
TCTAGAAATCAAAAAGTTTGTGGTACTCATCGAGCAAGCATGTAAAGCTGAAGAACTCGGGAAAA
TGAAAAGAAAAGCGAATT
Found at i:104888505 original size:54 final size:54
Alignment explanation
Indices: 104888393--104888514 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 54
104888383 CAACACACCT
* *
104888393 AGATTCGTAAAATCACATAAGTTGAAGGTCATGAACGAAAATCAACAGACAGCA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCATGAACGAAAATCAACAAACAGCA
* * * * * ** * **
104888447 AGATTTGTAAAATCCCATTAGTAGAAGGTCGTGATCTTAAATCAACAAACTGGG
1 AGATTCGTAAAATCACATAAGTAGAAGGTCATGAACGAAAATCAACAAACAGCA
*
104888501 AGATTCATAAAATC
1 AGATTCGTAAAATC
104888515 TTGCAAATAA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.24
Consensus pattern (54 bp):
AGATTCGTAAAATCACATAAGTAGAAGGTCATGAACGAAAATCAACAAACAGCA
Found at i:104888597 original size:53 final size:54
Alignment explanation
Indices: 104888466--104888597 Score: 135
Period size: 53 Copynumber: 2.5 Consensus size: 54
104888456 AAATCCCATT
* *
104888466 AGTAGAAGGTCGTGATCT-TAAATCAACAAACTGGGAGATTCATAAAATCTTGCA
1 AGTAGAAGGTCGTAAT-TGTAAATCAACAAACTGCGAGATTCATAAAATCTTGCA
* * * * * * * *
104888520 AATAAAAGGTCGTCATCGCT-AATCAA-TAAGTGCGAGATTCGTAAAATCTTGTA
1 AGTAGAAGGTCGTAATTG-TAAATCAACAAACTGCGAGATTCATAAAATCTTGCA
104888573 AGTAGAAGGTCGTAATTGTAAATCA
1 AGTAGAAGGTCGTAATTGTAAATCA
104888598 GCGGACCTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
52 1 0.02
53 41 0.66
54 19 0.31
55 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGTAGAAGGTCGTAATTGTAAATCAACAAACTGCGAGATTCATAAAATCTTGCA
Found at i:104888759 original size:54 final size:54
Alignment explanation
Indices: 104888700--104888958 Score: 216
Period size: 54 Copynumber: 4.8 Consensus size: 54
104888690 GAATCACATT
* * * *
104888700 GTCTACTGATTTACGATAACGATCTTCTACTTAAAAGATTTTATTAATCTCACG
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * * * * * * ***
104888754 ATCTACTGATTTACGATGATGACCTTTTACTTATGGGATTTTATGAATTTGTTG
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * * **
104888808 GTCCACTGATTTACGATCACAACCTTCTACTTAAGGGATTTTACTG-ATCTTGCG
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTA-TGAATCTCACG
* * * ***
104888862 GTCTACTGATTTATGATCATGACCTTCTACTTACGAGATTTTATGAATCTCGTA
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * * * *
104888916 GTCTGCTGATTTATGATTACGACATTATACTTAA-ATGATTTTA
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGA-GATTTTA
104888959 CGGATCTAGA
Statistics
Matches: 163, Mismatches: 39, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
53 3 0.02
54 158 0.97
55 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (54 bp):
GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTCACG
Found at i:104888925 original size:108 final size:108
Alignment explanation
Indices: 104888700--104888965 Score: 291
Period size: 108 Copynumber: 2.5 Consensus size: 108
104888690 GAATCACATT
* * *
104888700 GTCTACTGATTTACGATAACGATCTTCTACTTAAAAGATTTTATTAATCTCACGATCTACTGATT
1 GTCTACTGATTTACGATAACGACCTTCTACTTAAAAGATTTTACTGATCTCACGATCTACTGATT
* * * * * *
104888765 TACGATGATGACCTTTTACTTATGGGATTTTATGAATTTGTTG
66 TACGATCATGACCTTCTACTTACGAGATTTTATGAATTCGTTA
* * * ** ** *
104888808 GTCCACTGATTTACGATCACAACCTTCTACTTAAGGGATTTTACTGATCTTGCGGTCTACTGATT
1 GTCTACTGATTTACGATAACGACCTTCTACTTAAAAGATTTTACTGATCTCACGATCTACTGATT
*
104888873 TATGATCATGACCTTCTACTTACGAGATTTTATGAATCTCG-TA
66 TACGATCATGACCTTCTACTTACGAGATTTTATGAAT-TCGTTA
* * * * * * *
104888916 GTCTGCTGATTTATGATTACGACATTATACTTAAATGATTTTACGGATCT
1 GTCTACTGATTTACGATAACGACCTTCTACTTAAAAGATTTTACTGATCT
104888966 AGACGTGTTG
Statistics
Matches: 129, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
108 127 0.98
109 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (108 bp):
GTCTACTGATTTACGATAACGACCTTCTACTTAAAAGATTTTACTGATCTCACGATCTACTGATT
TACGATCATGACCTTCTACTTACGAGATTTTATGAATTCGTTA
Found at i:104889299 original size:54 final size:54
Alignment explanation
Indices: 104889241--104889416 Score: 219
Period size: 54 Copynumber: 3.3 Consensus size: 54
104889231 TTATTTACGA
*
104889241 GATTTTATGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
1 GATTTTACGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
* * *
104889295 GATTTTACGAATCTGACAATCTTTTAATTTACAATCACGACCTTCTACTTATGG
1 GATTTTACGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
* *** * * **
104889349 GATTTTACGAATCTCAC-GATCCACTGATTTATGATCACAACCTTCTACTTATAT
1 GATTTTACGAATCTGACAG-TCTTTTGATTTACGATCACGACCTTCTACTTATGG
*
104889403 GATTTTACAAATCT
1 GATTTTACGAATCT
104889417 AGGCATGTTG
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.39
Consensus pattern (54 bp):
GATTTTACGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
Found at i:104889302 original size:30 final size:30
Alignment explanation
Indices: 104889268--104889358 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
104889258 AGTCTTTTGA
104889268 TTTACGATCACGACCTTCTACTTATGGGAT
1 TTTACGATCACGACCTTCTACTTATGGGAT
* ** *
104889298 TTTACGAATC-TGACAATCT--TT-T---AA
1 TTTACG-ATCACGACCTTCTACTTATGGGAT
*
104889322 TTTACAATCACGACCTTCTACTTATGGGAT
1 TTTACGATCACGACCTTCTACTTATGGGAT
104889352 TTTACGA
1 TTTACGA
104889359 ATCTCACGAT
Statistics
Matches: 43, Mismatches: 10, Indels: 16
0.62 0.14 0.23
Matches are distributed among these distances:
23 3 0.07
24 12 0.28
26 2 0.05
27 2 0.05
28 2 0.05
30 19 0.44
31 3 0.07
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.38
Consensus pattern (30 bp):
TTTACGATCACGACCTTCTACTTATGGGAT
Found at i:104889654 original size:451 final size:450
Alignment explanation
Indices: 104888813--104890020 Score: 1255
Period size: 451 Copynumber: 2.7 Consensus size: 450
104888803 TGTTGGTCCA
* * *
104888813 CTGATTTACGATCACAACCTTCTACTTAAGGGATTTTACTG-ATCTTGCGGTCTACTGATTTATG
1 CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTAC-GAATCTTGCGGTCTACTAATTTACG
* * * * * *
104888877 ATCATGACCTTCTACTTACGAGATTTTATGAATCT-CGTAGTCTGCTGATTTATGATTACGACAT
65 ATCACGACCTTCTACTTATGAGATTTTATGAATCTACG-A-TCCGCTGATTTATGATCACAACCT
* * * * * *
104888941 TATACTTAAATGATTTTACGGATCTAGACGTGTTGAGGAAGAACTTAAAATTGACCTATT-TTCC
128 TCTACTTATATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACC-ATTCTTCC
* * * *
104889005 TTTAAAGCAAGTTAGATGCTAGAGATGATGAATATAGGGGTGTTGAGGATGAATTCAAAATTGAG
192 TTTAAAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGA-GAACTCAAAACTGAC
* * *
104889070 CATGAAA-GATGGATGATAGGGGAATCAATTTTGTTACATTGCCTTTGTGAGCTGAAGCTAGTTT
256 CATGAAAGGATGGATGATAGGGGAATCAATGTTGTTACATTACCTTTGTGAGCTGAAACTAGTTT
* * * * * * * * *
104889134 TCTTCGCCATAGGTTTGTAATGAGGCTTGAAATGGATCAATCTGTTAAAAAAAAGTAACTTTCTG
321 TCTTCACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCTCTCAAAAAAAAGGAACTTTCTG
* * *
104889199 AAAAGCTTCAGATGACTTACAATCACGACATTTTATTTAC-GAGATTTTATGAATCTGACAGTCT
386 AAAAGCTTCAGATGACTTACAATCACGACATTTTACTTACAG-GATTTTACGAATCTAACAGTCT
*
104889263 T
450 G
* * ** ** *
104889264 TTGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATC-TGACAATCTTTTAATTTACA
1 CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTACGAATCTTG-CGGTCTACTAATTTACG
* * *
104889328 ATCACGACCTTCTACTTATGGGATTTTACGAATCTCACGATCCACTGATTTATGATCACAACCTT
65 ATCACGACCTTCTACTTATGAGATTTTATGAATCT-ACGATCCGCTGATTTATGATCACAACCTT
* * * * *
104889393 CTACTTATATGATTTTACAAATCTAGGCATGTTGAGGATGAACTCAAAACTGATCATTCTGCCCT
129 CTACTTATATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACCATTCT-TCCT
* * *
104889458 TCAGAA-CAAGTTAAATGCTAGAGATGATGAATATAGGCGTGTTGAGGA-AACACAAAACTGACC
193 TTA-AAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAGAACTCAAAACTGACC
* * * * * *
104889521 TTGAAAGGA-GGAT-A-A-TGGAATTAATGTTGTTATATTACTTTTGTGAGGTAGAAACTAGTTC
257 ATGAAAGGATGGATGATAGGGGAATCAATGTTGTTACATTACCTTTGTGAGCT-GAAACTAGTT-
* **
104889582 TT-TTCACAATAAGTCTGAAATAAGGCTTGAAATGTATTGATCTACTCAGAAAAACAAGGAACTC
320 TTCTTCACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCT-CTCA-AAAAA-AAGGAACT-
* * * *
104889646 TT-TGAAAAGCTTCAGTTGATTTACAATCATGACCTTTTACTTACAGGATTTTACGAATCTAACA
381 TTCTGAAAAGCTTCAGATGACTTACAATCACGACATTTTACTTACAGGATTTTACGAATCTAACA
104889710 GTCTG
446 GTCTG
* * *
104889715 CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTGTGGTCTACTAATTTACGA
1 CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTACGAATCTTGCGGTCTACTAATTTACGA
* * * * * * *
104889780 CCACAACCTTCTACCTATGAGATTTTATGAATCTTATGGTCCGCTTATTTACGATCACAACCTTC
66 TCACGACCTTCTACTTATGAGATTTTATGAATC-TACGATCCGCTGATTTATGATCACAACCTTC
* * * * * *
104889845 TAATT-TCGA-GATTTTATGAATCTAGGTGTATTGAGGAAGAACTCAAAACTAACCAGTCTATCC
130 TACTTAT--ATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACCATTCT-TCC
* * * * *
104889908 TTTAAAGCAAGTTAGATGCTAGAGATTAAGAATAAAGGCATGTTAAGGAAGAACTCAAAACTGAC
192 TTTAAAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGG-AGAACTCAAAACTGAC
* * * * * *
104889973 CATGAAA-GAAGAAGGAT-GGAGGAATCAATTTTGTAACATTGCCTTTGT
256 CATGAAAGGATGGATGATAGG-GGAATCAATGTTGTTACATTACCTTTGT
104890021 AAAACCCCAA
Statistics
Matches: 615, Mismatches: 115, Indels: 49
0.79 0.15 0.06
Matches are distributed among these distances:
447 27 0.04
448 42 0.07
449 5 0.01
450 34 0.06
451 403 0.66
452 56 0.09
453 25 0.04
454 1 0.00
456 22 0.04
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (450 bp):
CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTACGAATCTTGCGGTCTACTAATTTACGA
TCACGACCTTCTACTTATGAGATTTTATGAATCTACGATCCGCTGATTTATGATCACAACCTTCT
ACTTATATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACCATTCTTCCTTTA
AAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAGAACTCAAAACTGACCATGA
AAGGATGGATGATAGGGGAATCAATGTTGTTACATTACCTTTGTGAGCTGAAACTAGTTTTCTTC
ACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCTCTCAAAAAAAAGGAACTTTCTGAAAAG
CTTCAGATGACTTACAATCACGACATTTTACTTACAGGATTTTACGAATCTAACAGTCTG
Found at i:104889750 original size:54 final size:54
Alignment explanation
Indices: 104889662--104889868 Score: 209
Period size: 54 Copynumber: 3.8 Consensus size: 54
104889652 AAGCTTCAGT
* ** * **
104889662 TGATTTACAATCATGACCTTTTACTTAC-AGGATTTTACGAATCTAACAGTCTGC
1 TGATTTACGATCACAACCTTCTACTTACGA-GATTTTACGAATCTAATGGTCTGC
* ** *
104889716 TGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTGTGGTCTAC
1 TGATTTACGATCACAACCTTCTACTTACGAGATTTTACGAATCTAATGGTCTGC
* * * * * * *
104889770 TAATTTACGACCACAACCTTCTACCTATGAGATTTTATGAATCTTATGGTCCGC
1 TGATTTACGATCACAACCTTCTACTTACGAGATTTTACGAATCTAATGGTCTGC
* * * *
104889824 TTATTTACGATCACAACCTTCTAATTTCGAGATTTTATGAATCTA
1 TGATTTACGATCACAACCTTCTACTTACGAGATTTTACGAATCTA
104889869 GGTGTATTGA
Statistics
Matches: 128, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
54 127 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (54 bp):
TGATTTACGATCACAACCTTCTACTTACGAGATTTTACGAATCTAATGGTCTGC
Found at i:104891184 original size:17 final size:17
Alignment explanation
Indices: 104891162--104891207 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
104891152 ACCCATATAA
*
104891162 GCCCACATGCCCGTGTG
1 GCCCACAAGCCCGTGTG
104891179 GCCCACAAGCCCGTGTG
1 GCCCACAAGCCCGTGTG
104891196 GCCCACAAGCCC
1 GCCCACAAGCCC
104891208 AAAAATGATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.17, C:0.46, G:0.26, T:0.11
Consensus pattern (17 bp):
GCCCACAAGCCCGTGTG
Found at i:104892649 original size:15 final size:15
Alignment explanation
Indices: 104892629--104892659 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
104892619 ACTTATCCCT
104892629 TAGACCAGTAGGCCC
1 TAGACCAGTAGGCCC
104892644 TAGACCAGTAGGCCC
1 TAGACCAGTAGGCCC
104892659 T
1 T
104892660 TTATGTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (15 bp):
TAGACCAGTAGGCCC
Found at i:104893130 original size:54 final size:54
Alignment explanation
Indices: 104893049--104893347 Score: 181
Period size: 54 Copynumber: 5.5 Consensus size: 54
104893039 TACTTTTGGT
** * ** * * *
104893049 ATTTTACGAATCTCACGATCTGTTAATTTATGATGATAATCTTCTACTTATAAG
1 ATTTTACGAATCTCGTGGTCTACTAATTTACGATCATAATCTTCTACTTACAAG
* * * * *
104893103 ATTTTACGAATCTCGTGGTCTACTAATTTACAATGA-AGACCTTTTACTTACAGG
1 ATTTTACGAATCTCGTGGTCTACTAATTTACGATCATA-ATCTTCTACTTACAAG
* * * * * **
104893157 ATTTTACGAATCTCTTGGTCCACTGATTTATGATCATGA-CTTTCTACTTATTAG
1 ATTTTACGAATCTCGTGGTCTACTAATTTACGATCATAATC-TTCTACTTACAAG
* * * ** * *
104893211 ATTTTAAGAATCTTGTGGCCTGTTGAA-TTACGATCATAATTTTCTACTTACGAG
1 ATTTTACGAATCTCGTGGTCTACT-AATTTACGATCATAATCTTCTACTTACAAG
* * * ** * ** * *
104893265 ATTTTATGAATCTCGCGGTTTGTTGATTTACGATCACGACCTTCTTCTTACAAG
1 ATTTTACGAATCTCGTGGTCTACTAATTTACGATCATAATCTTCTACTTACAAG
* * * *
104893319 ATTTTATGAATGTCGTGGTCCACTGATTT
1 ATTTTACGAATCTCGTGGTCTACTAATTT
104893348 CTGGTCACGA
Statistics
Matches: 186, Mismatches: 53, Indels: 12
0.74 0.21 0.05
Matches are distributed among these distances:
53 3 0.02
54 182 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41
Consensus pattern (54 bp):
ATTTTACGAATCTCGTGGTCTACTAATTTACGATCATAATCTTCTACTTACAAG
Found at i:104893324 original size:162 final size:162
Alignment explanation
Indices: 104893084--104893378 Score: 369
Period size: 162 Copynumber: 1.8 Consensus size: 162
104893074 ATTTATGATG
* * *
104893084 ATAATCTTCTACTTATAAGATTTTACGAATCTCGTGGTCTACTAATTTACAATGAAGACCTTTTA
1 ATAATCTTCTACTTACAAGATTTTACGAATCTCGCGGTCTACTAATTTACAATCAAGACCTTTTA
* * * * *
104893149 CTTACAGGATTTTACGAATCTCTTGGTCCACTGATTTATGATCATGACTTTCTACTTAT-TAGAT
66 CTTACAAGATTTTACGAATCTCGTGGTCCACTGATTTATGATCACGACCTTCTACCTATGT-GAT
104893213 TTTAAGAATCTTGTGGCCTGTTGAATTACGATC
130 TTTAAGAATCTTGTGGCCTGTTGAATTACGATC
* * * * ** * * *
104893246 ATAATTTTCTACTTACGAGATTTTATGAATCTCGCGGTTTGTTGATTTACGATCACGACCTTCTT
1 ATAATCTTCTACTTACAAGATTTTACGAATCTCGCGGTCTACTAATTTACAATCAAGACCTT-TT
* * * *
104893311 -CTTACAAGATTTTATGAATGTCGTGGTCCACTGATTTCTGGTCACGACCTTCTACCTATGTGAT
65 ACTTACAAGATTTTACGAATCTCGTGGTCCACTGATTTATGATCACGACCTTCTACCTATGTGAT
104893375 TTTA
130 TTTA
104893379 CTAATCGAGG
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
162 107 0.97
163 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.41
Consensus pattern (162 bp):
ATAATCTTCTACTTACAAGATTTTACGAATCTCGCGGTCTACTAATTTACAATCAAGACCTTTTA
CTTACAAGATTTTACGAATCTCGTGGTCCACTGATTTATGATCACGACCTTCTACCTATGTGATT
TTAAGAATCTTGTGGCCTGTTGAATTACGATC
Found at i:104894085 original size:54 final size:53
Alignment explanation
Indices: 104894026--104894285 Score: 152
Period size: 54 Copynumber: 4.8 Consensus size: 53
104894016 AAGCTTTAGT
* *
104894026 TGATTTACAATCACGACC-TCTTACTTATAGGATTTTATGAATCTCAATGT-T-TGC
1 TGATTTACAATCACGACCTTC-TACTTACAGGATTTTACGAATCT---TGTATCTGC
* * *
104894080 TGATTTACAATGACAACCTTCTACTTACGGGATTTTACGAATCTTGTAATCTGC
1 TGATTTACAATCACGACCTTCTACTTACAGGATTTTACGAATCTTGT-ATCTGC
* * * * * * *
104894134 TGATTTACAATCACGGCCATCTATTTACGGGATTTTATGGATCTAGTGTTTC-GC
1 TGATTTACAATCACGACCTTCTACTTACAGGATTTTACGAATCT--TGTATCTGC
* * * * * ** *** **
104894188 TAATTTA-AGATCACAACTTTCTATTTACAAGATTTTTTGAATCTCACAATCTAT
1 TGATTTACA-ATCACGACCTTCTACTTACAGGATTTTACGAATCT-TGTATCTGC
* * * *
104894242 TGATTTACGATCATGACCTTCTACTTACGGGATTCTACGAATCT
1 TGATTTACAATCACGACCTTCTACTTACAGGATTTTACGAATCT
104894286 CGCAGTCTAT
Statistics
Matches: 157, Mismatches: 40, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
51 3 0.02
53 4 0.03
54 143 0.91
55 4 0.03
56 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (53 bp):
TGATTTACAATCACGACCTTCTACTTACAGGATTTTACGAATCTTGTATCTGC
Found at i:104894222 original size:108 final size:108
Alignment explanation
Indices: 104894026--104894286 Score: 242
Period size: 108 Copynumber: 2.4 Consensus size: 108
104894016 AAGCTTTAGT
* *
104894026 TGATTTACAATCACGACCTCTTACTTATAGGATTTTATGAATCTCAATGTTTGCTGATTTACAAT
1 TGATTTACAATCACGACCTCTTACTTACAGGATTTTATGAATCTCAATGTTTGCTAATTTACAAT
* **
104894091 GACAACCTTCTACTTACGGGATTTTACGAATCTTGTAATCTGC
66 CACAACCTTCTACTTACAAGATTTTACGAATCTTGTAATCTGC
* * * * *
104894134 TGATTTACAATCACGGCCATC-TATTTACGGGATTTTATGGATCT-AGTGTTTCGCTAATTTA-A
1 TGATTTACAATCACGACC-TCTTACTTACAGGATTTTATGAATCTCAATGTTT-GCTAATTTACA
* * ** *** **
104894196 GATCACAACTTTCTATTTACAAGATTTTTTGAATCTCACAATCTAT
64 -ATCACAACCTTCTACTTACAAGATTTTACGAATCTTGTAATCTGC
* * * * *
104894242 TGATTTACGATCATGACCT-TCTACTTACGGGATTCTACGAATCTC
1 TGATTTACAATCACGACCTCT-TACTTACAGGATTTTATGAATCTC
104894287 GCAGTCTATT
Statistics
Matches: 121, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
107 8 0.07
108 111 0.92
109 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (108 bp):
TGATTTACAATCACGACCTCTTACTTACAGGATTTTATGAATCTCAATGTTTGCTAATTTACAAT
CACAACCTTCTACTTACAAGATTTTACGAATCTTGTAATCTGC
Found at i:104894318 original size:54 final size:53
Alignment explanation
Indices: 104894226--104894338 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 53
104894216 AAGATTTTTT
* * *
104894226 GAATCTCACAATCTATTGATTTACGATCATGACCTTCTACTTACGGGATTCTAC
1 GAATCTCACAATCTATTAATTCACGATCACGACCTTCTA-TTACGGGATTCTAC
* * ** ** *
104894280 GAATCTCGCAGTCTATTAATTCACGATCACGATTTTCTATTACTTGATTTTAC
1 GAATCTCACAATCTATTAATTCACGATCACGACCTTCTATTACGGGATTCTAC
104894333 GAATCT
1 GAATCT
104894339 AGGCGTGTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
53 17 0.35
54 32 0.65
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38
Consensus pattern (53 bp):
GAATCTCACAATCTATTAATTCACGATCACGACCTTCTATTACGGGATTCTAC
Found at i:104894838 original size:108 final size:108
Alignment explanation
Indices: 104894724--104894989 Score: 272
Period size: 108 Copynumber: 2.5 Consensus size: 108
104894714 CCTACTGACT
* * * * *
104894724 GGATTTTACGAATATCGT-AGTCCACTGATTTACCATCACAACTTTCTACTTACGGGATTTCACT
1 GGATTTTACAAATCTCGTGA-TCCACTGATTTACAATCACAACTTTCTACTTACGAGATTTCACA
* * * *
104894788 AATCTC-ATGGTCCA-CAGATTTACGATCATGACCTTTTACTTA-A
65 AACCTCGAT-ATCCATCAG-TTTACGATCATGACATTCTACTTATA
* * * * * *
104894831 GGAATTTTACAAATCTCGTGATCCGCTAATTTACAATCATGACCTTT-TACTTATGAGATTTTAC
1 GG-ATTTTACAAATCTCGTGATCCACTGATTTACAATCA-CAACTTTCTACTTACGAGATTTCAC
* * *
104894895 AAACCTCGCTATCCATTAGTTTACGATCATGACATTCTATTTATA
64 AAACCTCGATATCCATCAGTTTACGATCATGACATTCTACTTATA
* *
104894940 GGATTTTACAAATCTCGTGATCCACTGATTTACGATCACGACTTTCTACT
1 GGATTTTACAAATCTCGTGATCCACTGATTTACAATCACAACTTTCTACT
104894990 GACGTAATTT
Statistics
Matches: 128, Mismatches: 24, Indels: 13
0.78 0.15 0.08
Matches are distributed among these distances:
107 6 0.05
108 110 0.86
109 12 0.09
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (108 bp):
GGATTTTACAAATCTCGTGATCCACTGATTTACAATCACAACTTTCTACTTACGAGATTTCACAA
ACCTCGATATCCATCAGTTTACGATCATGACATTCTACTTATA
Found at i:104894895 original size:54 final size:54
Alignment explanation
Indices: 104894587--104894977 Score: 215
Period size: 54 Copynumber: 7.2 Consensus size: 54
104894577 AAGCTTTAGT
* * * * * *
104894587 TAATTTACAATCACGACCTTTTACTTACGGGATTTTACAAATCT--TAAAGTCTAC
1 TAATTTACGATCATGACCTTTTACTTATGAGATTTTACAAATCTCGT-GA-TCCAC
* *** * * * * * * * *
104894641 TAATTTATGATGGCGACCTTCTACTTACGGGATTTTACGAATATCGAGGTCTAC
1 TAATTTACGATCATGACCTTTTACTTATGAGATTTTACAAATCTCGTGATCCAC
* * * * ** * * *
104894695 TGATTTACTATTAAGACCTCCTACTGACTG-GATTTTACGAATATCGT-AGTCCAC
1 TAATTTACGATCATGACCTTTTACTTA-TGAGATTTTACAAATCTCGTGA-TCCAC
* * * * * * * * * *
104894749 TGATTTACCATCA-CAACTTTCTACTTACGGGATTTCACTAATCTCATGGTCCAC
1 TAATTTACGATCATGACCTTT-TACTTATGAGATTTTACAAATCTCGTGATCCAC
* *
104894803 -AGATTTACGATCATGACCTTTTACTTAAG-GAATTTTACAAATCTCGTGATCCGC
1 TA-ATTTACGATCATGACCTTTTACTTATGAG-ATTTTACAAATCTCGTGATCCAC
* * *
104894857 TAATTTACAATCATGACCTTTTACTTATGAGATTTTACAAACCTCGCT-ATCCAT
1 TAATTTACGATCATGACCTTTTACTTATGAGATTTTACAAATCTCG-TGATCCAC
* * * *
104894911 TAGTTTACGATCATGACATTCTATTTAT-AGGATTTTACAAATCTCGTGATCCAC
1 TAATTTACGATCATGACCTTTTACTTATGA-GATTTTACAAATCTCGTGATCCAC
*
104894965 TGATTTACGATCA
1 TAATTTACGATCA
104894978 CGACTTTCTA
Statistics
Matches: 263, Mismatches: 59, Indels: 30
0.75 0.17 0.09
Matches are distributed among these distances:
53 7 0.03
54 247 0.94
55 9 0.03
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (54 bp):
TAATTTACGATCATGACCTTTTACTTATGAGATTTTACAAATCTCGTGATCCAC
Found at i:104894987 original size:54 final size:54
Alignment explanation
Indices: 104894724--104894989 Score: 240
Period size: 54 Copynumber: 4.9 Consensus size: 54
104894714 CCTACTGACT
* * * ** **
104894724 GGATTTTACGAATATCGT-AGTCCACTGATTTACCATCACAACTTTCTACTTACG
1 GGATTTTACAAATCTCGTGA-TCCACTGATTTACGATCATGACTTTCTACTTATA
* * * * *
104894778 GGATTTCACTAATCTCATGGTCCACAGATTTACGATCATGACCTTT-TACTTA-A
1 GGATTTTACAAATCTCGTGATCCACTGATTTACGATCATGA-CTTTCTACTTATA
* * *
104894831 GGAATTTTACAAATCTCGTGATCCGCTAATTTACAATCATGACCTTT-TACTTAT-
1 GG-ATTTTACAAATCTCGTGATCCACTGATTTACGATCATGA-CTTTCTACTTATA
* * * *
104894885 GAGATTTTACAAACCTCGCT-ATCCA-TTAGTTTACGATCATGACATTCTATTTATA
1 G-GATTTTACAAATCTCG-TGATCCACTGA-TTTACGATCATGACTTTCTACTTATA
*
104894940 GGATTTTACAAATCTCGTGATCCACTGATTTACGATCACGACTTTCTACT
1 GGATTTTACAAATCTCGTGATCCACTGATTTACGATCATGACTTTCTACT
104894990 GACGTAATTT
Statistics
Matches: 172, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
53 8 0.05
54 155 0.90
55 9 0.05
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (54 bp):
GGATTTTACAAATCTCGTGATCCACTGATTTACGATCATGACTTTCTACTTATA
Found at i:104895000 original size:54 final size:54
Alignment explanation
Indices: 104894659--104895009 Score: 232
Period size: 54 Copynumber: 6.5 Consensus size: 54
104894649 GATGGCGACC
* * * * * * * * * *
104894659 TTCTACTTACGGGATTTTACGAATATCGAGGTCTACTGATTTACTATTAAGACC
1 TTCTACTTACGGAATTTTACAAATCTCGTGATCCACTGATTTACGATCATGACT
* * * * * **
104894713 TCCTACTGACTGG-ATTTTACGAATATCGT-AGTCCACTGATTTACCATCACAACT
1 TTCTACTTAC-GGAATTTTACAAATCTCGTGA-TCCACTGATTTACGATCATGACT
* * * * * *
104894767 TTCTACTTACGGGATTTCACTAATCTCATGGTCCACAGATTTACGATCATGACCT
1 TTCTACTTACGGAATTTTACAAATCTCGTGATCCACTGATTTACGATCATGA-CT
* * * *
104894822 TT-TACTTAAGGAATTTTACAAATCTCGTGATCCGCTAATTTACAATCATGACCT
1 TTCTACTTACGGAATTTTACAAATCTCGTGATCCACTGATTTACGATCATGA-CT
* * * *
104894876 TT-TACTTA-TGAGATTTTACAAACCTCGCT-ATCCA-TTAGTTTACGATCATGACA
1 TTCTACTTACGGA-ATTTTACAAATCTCG-TGATCCACTGA-TTTACGATCATGACT
* * *
104894929 TTCTATTTATAGG-ATTTTACAAATCTCGTGATCCACTGATTTACGATCACGACT
1 TTCTACTTA-CGGAATTTTACAAATCTCGTGATCCACTGATTTACGATCATGACT
* * *
104894983 TTCTACTGACGTAATTTTGACGAATCT
1 TTCTACTTACGGAATTTT-ACAAATCT
104895010 AGGCATTTTG
Statistics
Matches: 234, Mismatches: 48, Indels: 29
0.75 0.15 0.09
Matches are distributed among these distances:
53 11 0.05
54 206 0.88
55 16 0.07
56 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (54 bp):
TTCTACTTACGGAATTTTACAAATCTCGTGATCCACTGATTTACGATCATGACT
Found at i:104895464 original size:54 final size:54
Alignment explanation
Indices: 104895414--104895518 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
104895404 AAAATCTCGT
* *
104895414 AGTCCGCTAATTTACAATCATGACATTCAACTTACAAGATTTTACGAATCTCAC
1 AGTCCGCTAATTTACAATCACGACATTCAACTAACAAGATTTTACGAATCTCAC
* * ** * * *
104895468 GGTCTGCTAATTTATGATCACGACCTTCTACTAACATGATTTTACGAATCT
1 AGTCCGCTAATTTACAATCACGACATTCAACTAACAAGATTTTACGAATCT
104895519 AGGCGTGTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.34
Consensus pattern (54 bp):
AGTCCGCTAATTTACAATCACGACATTCAACTAACAAGATTTTACGAATCTCAC
Found at i:104895780 original size:509 final size:506
Alignment explanation
Indices: 104894749--104896372 Score: 1740
Period size: 510 Copynumber: 3.2 Consensus size: 506
104894739 CGTAGTCCAC
* * * * * *
104894749 TGATTTACCATCACAACTTTCTACTTACGGGATTTCACT-AATCTC-ATGGTCCACAGATTTACG
1 TGATTTACAATCACGA-TTTTTACTTACGGGATTTTA-TGAATCTCGA-GGT-CGCTGATTTACG
* * * * **** *
104894812 ATCATGACCTTTTACTTA--AGGAATTTTACAAATCTCGTGATCCGCTAATTTACAATCATGACC
62 ATCACGACCTTCTACTTACCA-G-ATTTTACAAATCCCGTGCTGAATTGATTTACAATCATGACC
* * ** * * *
104894875 TTTTACTTATGAGATTTTACAAACCTCGCTA-TCCATTAGTTTACGATCATGACATTCTATTTAT
125 TTCTACTTATGAGATTTTACAAATCTCG-TAGTCCGCTAATTTACAATCATGACATTCTACTTAT
* * * * * * *
104894939 AGGATTTTACAAATCTCGTGATCCACTGATTTACGATCACGACTTTCTACTGACGTAATTTTGAC
189 AGGATTTTACGAATCTCGCGGTCCACTAATTTACGATCACGACCTTCTACTAACGTGATTTT-AC
* * * * * ** *
104895004 GAATCTAGGCATTTTGAAGAAAAACTAAAAATTGACATCTCAT-CTTTTTAGAGCAAGTTAGATG
253 GAATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTC-TGCCCTTTAAAGCAAGTTAGATG
* * *
104895068 CTAGAGATGATTAATATAGGCGAGTTGAGGAAGAACTCAAAACTGACCTTAAAAGAAGGAGGATA
317 CTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAA--AAGATA
* **
104895133 GAGGAATTAAATTTGTTACATTACCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACGCCTGA
380 GAGGAATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGA
* * *
104895198 AATGAGGATTGAAATGGTTCGATCTACTTAGAAAAACAAAGAACTTTCTTAAGAGCTT-ATGT
445 AATGAGGCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCA-GT
* * *
104895260 TGATTTACAATCACGGTATATTACTTACGGGATTTTATGAATCTCGAGGTCTGCTGATTTATGAT
1 TGATTTACAATCACGAT-TTTTACTTACGGGATTTTATGAATCTCGAGGTC-GCTGATTTACGAT
* * *** **
104895325 CACGACCTT-TACTTACCATATTTTACGAATCCCGTGCTTCGTTGATTTACAATCACAACCTTCT
64 CACGACCTTCTACTTACCAGATTTTACAAATCCCGTGCTGAATTGATTTACAATCATGACCTTCT
* * * * *
104895389 ACTTATGGGATTTTAAAAATCTCGTAGTCCGCTAATTTACAATCATGACATTCAACTTACAAGAT
129 ACTTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCATGACATTCTACTTATAGGAT
* ** * *
104895454 TTTACGAATCTCACGGTCTGCTAATTTATGATCACGACCTTCTACTAACATGATTTTACGAATCT
194 TTTACGAATCTCGCGGTCCACTAATTTACGATCACGACCTTCTACTAACGTGATTTTACGAATCT
* *
104895519 AGGCGTGTTGAAGAAGAACTAAAAACTGACCTTTCTGCCCTTCAAAGCAAGTTAGATGCTAGAGA
259 AGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTTAAAGCAAGTTAGATGCTAGAGA
* * *
104895584 TGATTAATATAAGCGTGTTGAGGAAGAACTCAAAACTAACCTTGAAAGAATTAAGTTAGAGGAAT
324 TGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAA--AAGATAGAGGAAT
* * * *
104895649 CAAATTTGTTACATTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATATATTTGAAATGAGG
387 TAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGAAATGAGG
* * * * * * *
104895714 CTTGAAATGGATCGATTTGCTCAGAAAAATAAGGAACTTACTTAAAAGCTTCAAT
452 CTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCAGT
* * * * *
104895769 TGATTTACAATCACGACCTTTTACTTATGTG-TTATTATAAATCTCGTGGTCCGCTGATTTACGA
1 TGATTTACAATCACGA-TTTTTACTTACGGGATT-TTATGAATCTCGAGGT-CGCTGATTTACGA
* * * ** * *
104895833 TTACAACCTTCTACTTACGAGATTTTACAAATCTTGTGGTGAATTGATTTGCAATCATGACCTTC
63 TCACGACCTTCTACTTACCAGATTTTACAAATCCCGTGCTGAATTGATTTACAATCATGACCTTC
* * * * ** * * * **
104895898 TACTTTATCA-ATTTTACGAATCTTGTGGTTAGCTGATTCACAATCATAACCGTCTACTTATAGG
128 TAC-TTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCATGACATTCTACTTATAGG
* * * * * * *
104895962 ATTTTACGAATCTTGCAGTCCACTAATTTACAATCATGACCTTCTACTTACGGGATTTTAAGAAT
192 ATTTTACGAATCTCGCGGTCCACTAATTTACGATCACGACCTTCTACTAACGTGATTTTACGAAT
* * *
104896027 CTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTTTGGCCTTTAAAGCAAGTTAGATGCTACA
257 CTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTTAAAGCAAGTTAGATGCTAGA
* * * * *
104896092 GATGGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAA-AAGAGAATAAAGGAA
322 GATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAAAG-ATAGAGGAA
* * * * *
104896156 TTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAATTCTTTTTACCAAACATCTGAAATAAG
386 TTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGAAATGAG
* * *
104896221 GCTTGACATGGATCGATCTATTTAGTAAAACAAGGAACTTTCTTAAGAGCTTCAGT
451 GCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCAGT
* * * * *
104896277 TGATTTACAATCACAACTTTTTACTTACGGGATTTTAGGAATCTCACAGTTCGTTGATTTACGAT
1 TGATTTACAATCACGA-TTTTTACTTACGGGATTTTATGAATCTC-GAGGTCGCTGATTTACGAT
** *
104896342 CACGACCTTCTACTTACGTGATTTTTCAAAT
64 CACGACCTTCTACTTACCAGATTTTACAAAT
104896373 ATAAGCGTGT
Statistics
Matches: 922, Mismatches: 174, Indels: 37
0.81 0.15 0.03
Matches are distributed among these distances:
507 2 0.00
508 188 0.20
509 285 0.31
510 385 0.42
511 60 0.07
512 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (506 bp):
TGATTTACAATCACGATTTTTACTTACGGGATTTTATGAATCTCGAGGTCGCTGATTTACGATCA
CGACCTTCTACTTACCAGATTTTACAAATCCCGTGCTGAATTGATTTACAATCATGACCTTCTAC
TTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCATGACATTCTACTTATAGGATTT
TACGAATCTCGCGGTCCACTAATTTACGATCACGACCTTCTACTAACGTGATTTTACGAATCTAG
GCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTTAAAGCAAGTTAGATGCTAGAGATG
ATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAAAGATAGAGGAATTAAA
TTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGAAATGAGGCTTG
AAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCAGT
Found at i:104895881 original size:54 final size:54
Alignment explanation
Indices: 104895823--104895956 Score: 128
Period size: 54 Copynumber: 2.5 Consensus size: 54
104895813 CGTGGTCCGC
* *
104895823 TGATTTACGATTACAACCTTCTAC-TTA-CGAGATTTTACAAATCTTGTGGTGAAT
1 TGATTTACAATCACAACCTTCTACTTTATC-A-ATTTTACAAATCTTGTGGTGAAT
* ** * * **
104895877 TGATTTGCAATCATGACCTTCTACTTTATCAATTTTACGAATCTTGTGGTTAGC
1 TGATTTACAATCACAACCTTCTACTTTATCAATTTTACAAATCTTGTGGTGAAT
* * *
104895931 TGATTCACAATCATAACCGTCTACTT
1 TGATTTACAATCACAACCTTCTACTT
104895957 ATAGGATTTT
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
54 60 0.92
55 4 0.06
56 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (54 bp):
TGATTTACAATCACAACCTTCTACTTTATCAATTTTACAAATCTTGTGGTGAAT
Found at i:104895966 original size:54 final size:55
Alignment explanation
Indices: 104895852--104895976 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 55
104895842 TCTACTTACG
* * ** * *
104895852 AGATTTTACAAATCTTGTGGTGAATTGATTTGCAATCATGACCTTCTACTTTATC
1 AGATTTTACGAATCTTGTGGTGAACTGATTCACAATCATAACCGTCTACTTTATC
* *
104895907 A-ATTTTACGAATCTTGTGGTTAGCTGATTCACAATCATAACCGTCTAC-TTAT-
1 AGATTTTACGAATCTTGTGGTGAACTGATTCACAATCATAACCGTCTACTTTATC
104895959 AGGATTTTACGAATCTTG
1 A-GATTTTACGAATCTTG
104895977 CAGTCCACTA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
52 1 0.02
53 4 0.07
54 54 0.90
55 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (55 bp):
AGATTTTACGAATCTTGTGGTGAACTGATTCACAATCATAACCGTCTACTTTATC
Found at i:104896635 original size:348 final size:346
Alignment explanation
Indices: 104895987--104896656 Score: 862
Period size: 348 Copynumber: 1.9 Consensus size: 346
104895977 CAGTCCACTA
* * *
104895987 ATTTACAATCATGACCTTCTACTTACGGGATTTTAAGAATCTAGGCGTGTTGAAGAAGAACTAAA
1 ATTTACAATCACGACCTTCTACTTACGGGATTTTAAGAATATAAGCGTGTTGAAGAAGAACTAAA
** * * * * *
104896052 AATTGACCTTTTTGGCCTTTAAAGCAAGTTAGATGCTACAGATGGTTAACATAGGCATGTTGAGG
66 AAGAGACCTATCTGCCCTTCAAAGCAAGTTAGATGCTACAGATAGTTAACATAGGCATGTTGAGG
* *
104896117 AAGAACTCAAAACTGACCTTGAAAAAGAGAATAAAGGAATTAAATTTGTTACATTGCCTTTGTGA
131 AAGAACTCAAAACTGACCTTAAAAAAGAGAATAAAGGAATCAAATTTGTTACATTGCCTTTGTGA
* * * * * *
104896182 GGCTAAAGCTAATTCTTTTTACCAAACATCTGAAATAAGGCTTGACATGGATCGATCTATTTAGT
196 GGCTAAAGCTAATTCTCTTCACCAAACATCTGAAATAAGGCTCGAAATGGATCGATCTATTCAGA
* * *
104896247 AAAACAAGGAACTTTCTTAAGAGCTTCAGTTGATTTACAATCACAACTTTTTACTTACGGGATTT
261 AAAACAAGGAACTTTCTGAAAAGCTTCAGTAGATTTACAATCACAACTTTTTACTTACGGGATTT
104896312 TAGGAATCTCACAGTTCGTTG
326 TAGGAATCTCACAGTTCGTTG
* * * * *
104896333 ATTTACGATCACGACCTTCTACTTACGTGATTTTTCA-AATATAAGCGTGTTGAGGAAGAACTCA
1 ATTTACAATCACGACCTTCTACTTACGGGA-TTTTAAGAATATAAGCGTGTTGAAGAAGAACTAA
* * * * * *
104896397 AAAGAGACCTATCTGCCCTTCAGAGCATGTTAGTTGCTAGAGATAGTTAATATAGGCGTGTTGAG
65 AAAGAGACCTATCTGCCCTTCAAAGCAAGTTAGATGCTACAGATAGTTAACATAGGCATGTTGAG
* * *
104896462 GAAGAACTTAAAA-TAGACCTTAAAAGAAGGAGGATAAAGGAATCAATTTTG-TAGCATTGCCTT
130 GAAGAACTCAAAACT-GACCTTAAAA-AA-GAGAATAAAGGAATCAAATTTGTTA-CATTGCCTT
* * * * * *
104896525 TGTGAGGCTGAAGCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTCGAAATGGATTGATCT-T
191 TGTGAGGCTAAAGCTAATTCTCTTCACCAAACATCTGAAATAAGGCTCGAAATGGATCGATCTAT
* * *
104896589 ATCAGAAAAACAAGGGACTTTCTGAAAAGCTTTAGTAGATTTACAATCACAATTTTTTACTTACG
256 -TCAGAAAAACAAGGAACTTTCTGAAAAGCTTCAGTAGATTTACAATCACAACTTTTTACTTACG
104896654 GGA
320 GGA
104896657 CGTTACAAAT
Statistics
Matches: 274, Mismatches: 44, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
345 1 0.00
346 123 0.45
347 10 0.04
348 140 0.51
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (346 bp):
ATTTACAATCACGACCTTCTACTTACGGGATTTTAAGAATATAAGCGTGTTGAAGAAGAACTAAA
AAGAGACCTATCTGCCCTTCAAAGCAAGTTAGATGCTACAGATAGTTAACATAGGCATGTTGAGG
AAGAACTCAAAACTGACCTTAAAAAAGAGAATAAAGGAATCAAATTTGTTACATTGCCTTTGTGA
GGCTAAAGCTAATTCTCTTCACCAAACATCTGAAATAAGGCTCGAAATGGATCGATCTATTCAGA
AAAACAAGGAACTTTCTGAAAAGCTTCAGTAGATTTACAATCACAACTTTTTACTTACGGGATTT
TAGGAATCTCACAGTTCGTTG
Found at i:104898157 original size:54 final size:54
Alignment explanation
Indices: 104898084--104898373 Score: 298
Period size: 54 Copynumber: 5.4 Consensus size: 54
104898074 GAGCTTCAGT
* * *** ** **
104898084 TGATTTACAATCACAACCTTTTACTTACAGGATTTTTTGAATCTCAAGGTCTAC
1 TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
* *
104898138 TGATTTACGATCATGACCTTGTACTTACTA-GATTTTACAAATCTCGTGGTCCGC
1 TGATTTACGATCACGACCTTTTACTTAC-AGGATTTTACAAATCTCGTGGTCCGC
* * *
104898192 TGATTTATGATCACAACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCAC
1 TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
* * * *
104898246 -CAGTTTACGATCATGACCTTTTACTTA-AGGAATTTTACAAATCTCGTAGTCTGC
1 TGA-TTTACGATCACGACCTTTTACTTACAGG-ATTTTACAAATCTCGTGGTCCGC
* * * * ** *
104898300 TAATTTATGATCACGACCTTTTATTTATAGGATTTTATGAATCTCCTGGTCCGC
1 TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
*
104898354 TGATTTACTATCACGACCTT
1 TGATTTACGATCACGACCTT
104898374 CTAATGATGT
Statistics
Matches: 195, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
53 5 0.03
54 185 0.95
55 5 0.03
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
Found at i:104898397 original size:108 final size:107
Alignment explanation
Indices: 104898093--104898390 Score: 346
Period size: 108 Copynumber: 2.8 Consensus size: 107
104898083 TTGATTTACA
* * *
104898093 ATCACAACCTTTTACTTACAGGATTTTTTGAATCTCAAGGTCTACTGATTTACGATCATGACCTT
1 ATCACAACCTTTTACTTACAGGATTTTATGAATCTCATGGTCCACTGATTTACGATCATGACCTT
* * * *
104898158 GTACTTACTAGATTTTACAAATCTCGTGGTCCGCTGATTTATG
66 CTACTTAGTA-ATTTTACAAATCTCGTAGTCCGCTAATTTATG
** * *
104898201 ATCACAACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCAC-CAGTTTACGATCATGACCT
1 ATCACAACCTTTTACTTACAGGATTTTATGAATCTCATGGTCCACTGA-TTTACGATCATGACCT
* * *
104898265 TTTACTTAAGGAATTTTACAAATCTCGTAGTCTGCTAATTTATG
65 TCTACTT-AGTAATTTTACAAATCTCGTAGTCCGCTAATTTATG
* * * * * * *
104898309 ATCACGACCTTTTATTTATAGGATTTTATGAATCTCCTGGTCCGCTGATTTACTATCACGACCTT
1 ATCACAACCTTTTACTTACAGGATTTTATGAATCTCATGGTCCACTGATTTACGATCATGACCTT
* *
104898374 CTAATGATGTAATTTTA
66 CTACTTA-GTAATTTTA
104898391 TGAATCTAGG
Statistics
Matches: 159, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
107 2 0.01
108 154 0.97
109 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (107 bp):
ATCACAACCTTTTACTTACAGGATTTTATGAATCTCATGGTCCACTGATTTACGATCATGACCTT
CTACTTAGTAATTTTACAAATCTCGTAGTCCGCTAATTTATG
Found at i:104898813 original size:54 final size:54
Alignment explanation
Indices: 104898705--104899070 Score: 225
Period size: 54 Copynumber: 6.8 Consensus size: 54
104898695 AGGTTTGCTA
* * * * ** ** ** * *
104898705 ATTTACGATGACGACCTTCAACTTATGGGATTTTACAAATCTCGCAAACTGCTA
1 ATTTATGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATAGTCCGCTG
* * ** * *
104898759 ATTTATGATCAAGGCCTTCTACTTTTGAGATTTTATGAATCTCATAGTCCGCTA
1 ATTTATGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATAGTCCGCTG
* * * **** * *
104898813 ATTCATGACCACGATCTTCTACTTACGGGATTTTACT-AATCTTGCGGTGCACTG
1 ATTTATGATCACGACCTTCTACTTACGGGATTTTA-TGAATCTCATAGTCCGCTG
* ** * * *
104898867 ATTTACT-ATCACGACCTTCTACTTAAGAAATTTTACGAATCTCGTGGTCCGCTG
1 ATTTA-TGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATAGTCCGCTG
* * * * * *
104898921 ATTTAAGTTTATGACCTTCTACTTATGGGATTTTACT-AATCTCATAGTCCTCTG
1 ATTTATGATCACGACCTTCTACTTACGGGATTTTA-TGAATCTCATAGTCCGCTG
* *** * *
104898975 ATTTATGATCATGACCTTCTACTTACGGGATTTTATGAATCTCGCGGTTCGTTG
1 ATTTATGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATAGTCCGCTG
* * * ** *
104899029 CTTTATGATCACAACCTTCTACTAACGTAATTTTACGAATCT
1 ATTTATGATCACGACCTTCTACTTACGGGATTTTATGAATCT
104899071 AGGCGTGTTA
Statistics
Matches: 238, Mismatches: 68, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
53 1 0.00
54 235 0.99
55 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (54 bp):
ATTTATGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATAGTCCGCTG
Found at i:104898941 original size:565 final size:564
Alignment explanation
Indices: 104897789--104898925 Score: 1193
Period size: 565 Copynumber: 2.0 Consensus size: 564
104897779 TCACATTCCA
* * * * * ** ** *
104897789 CTGATTTA-TGATCACAACCTTCTACTTACGTGATTTTATGAATCTATTCGTGTTCAGGAAGAAC
1 CTGATTTACT-ATCACGACCTTCTAATGATGTAATTTTATGAATCTAGGCGTGTTCAAAAAGAAA
* ** * * *
104897853 TCAAAACTAACCACTCTACCCTTCAGATTAAGTTAGATGTTAGAGATTATGCATATAGCCATGTT
65 TAAAAACTAACCACTCTACCCTTCAGAGCAAGTTAGATGCTAGAGATGATGAATATAGCCATGTT
* * *
104897918 GAGGAAGAACTCAAAACTGACCTTGAAAAAAGAAGAATAAATGAATCAATTTTTTTTACAATTCC
130 GAGGAAGAACTCAAAACTGACCTTGAAAAAAGAAGAATAAAGGAATCAATATTTGTTACAATTCC
*
104897983 TTCGTATGGCTAAAGCTAGTTCTCTTCACCATACTTCTGAATGAAGCTTGAAATAGATTGATCTT
195 TTCGTATGGCTAAAGCTAGTTCTCTTCACCATACGTCTGAATGAAGCTTGAAATAGATTGATCTT
* * * * *
104898048 CTCAGAAAAACAAGTAATTTTCTGAAGAGCTTCAGTTGATTTACAATCACAACCTTTTACTTACA
260 CTAAAAAAAAAAAGTAACTTTCTGAAAAGCTTCAGTTGATTTACAATCACAACCTTTTACTTACA
** * * **
104898113 GGATTTTTTGAATCTCAAGGTCTACTGATTTACGATCATGACCTTGTACTTACTAGATTTTACAA
325 GGATTTTACGAATCTCAAGGTCTACTAATTTACGATCACGACCTTCAACTTACTAGATTTTACAA
**** * * * *
104898178 ATCTCGTGGTCCGCTGATTTATGATCACAACCTTTTACTTACAGGATTTTACAAATCTCGTGGTC
390 ATCTCGCAAACCGCTAATTTATGATCACAACCTTCTACTTACAGGATTTTACAAATCTCATAGTC
* * * * * * *
104898243 CACCAGTTTACGATCATGACCTTTTACTTAAGGAATTTTACAAATCTCGTAGTCTGCTAATTTAT
455 CACCAATTCACGACCACGACCTTCTACTTAAGGAATTTTACAAATCTCGCAGTCTACTAATTTAT
* * * *
104898308 GATCACGACCTTTTATTTATAGGATTTTATGAATCTCCTGGTCCG
520 GATCACGACCTTCTACTTATAGAATTTTACGAATCTCCTGGTCCG
*
104898353 CTGATTTACTATCACGACCTTCTAATGATGTAATTTTATGAATCTAGGCGTGTTGAAAAAGAAAT
1 CTGATTTACTATCACGACCTTCTAATGATGTAATTTTATGAATCTAGGCGTGTTCAAAAAGAAAT
* * * * * *
104898418 AAAAATTGACCTCTCTACCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAATATAGGCGTGTTG
66 AAAAACTAACCACTCTACCCTTCAGAGCAAGTTAGATGCTAGAGATGATGAATATAGCCATGTTG
* ** * * * * *
104898483 AGGAAGAACTCAAAACTGATCTTGAAGGAAGGAGATTAGAGGAATTAA-ATTTGTTAC-CTTGCC
131 AGGAAGAACTCAAAACTGACCTTGAAAAAAGAAGAATAAAGGAATCAATATTTGTTACAATT-CC
* * * * *
104898546 TTTGTGA-GGCTGAAGCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATTG-TT
195 TTCGT-ATGGCTAAAGCTAGTTCTCTTCACCATACGTCTG-AATGAAGCTTGAAATAGATTGATC
* *
104898609 TTGCTAAAAAAAAAATAGGT-ACTTTCTGAAAAGCTTCAGTTGATTTACAATCACGACCTTTTAT
258 TT-CTAAAAAAAAAA-A-GTAACTTTCTGAAAAGCTTCAGTTGATTTACAATCACAACCTTTTAC
* * * * * * *
104898673 TTA-TGGCTTATTACGAATCTCGAGGTTTGCTAATTTACGATGACGACCTTCAACTTA-TGGGAT
320 TTACAGGATT-TTACGAATCTCAAGGTCTACTAATTTACGATCACGACCTTCAACTTACT-AGAT
* * ** **
104898736 TTTACAAATCTCGCAAACTGCTAATTTATGATCA-AGGCCTTCTACTT-TTGAGATTTTATGAAT
383 TTTACAAATCTCGCAAACCGCTAATTTATGATCACA-ACCTTCTACTTACAG-GATTTTACAAAT
* * * * * * * * *
104898799 CTCATAGTCCGCTAATTCATGACCACGATCTTCTACTTACGGGATTTTACTAATCTTGCGGTGC-
446 CTCATAGTCCACCAATTCACGACCACGACCTTCTACTTAAGGAATTTTACAAATCTCGCAGT-CT
* *
104898863 ACTGATTTACT-ATCACGACCTTCTACTTA-AGAAATTTTACGAATCTCGTGGTCCG
510 ACTAATTTA-TGATCACGACCTTCTACTTATAG-AATTTTACGAATCTCCTGGTCCG
104898918 CTGATTTA
1 CTGATTTA
104898926 AGTTTATGAC
Statistics
Matches: 463, Mismatches: 96, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
562 2 0.00
563 46 0.10
564 183 0.40
565 228 0.49
566 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (564 bp):
CTGATTTACTATCACGACCTTCTAATGATGTAATTTTATGAATCTAGGCGTGTTCAAAAAGAAAT
AAAAACTAACCACTCTACCCTTCAGAGCAAGTTAGATGCTAGAGATGATGAATATAGCCATGTTG
AGGAAGAACTCAAAACTGACCTTGAAAAAAGAAGAATAAAGGAATCAATATTTGTTACAATTCCT
TCGTATGGCTAAAGCTAGTTCTCTTCACCATACGTCTGAATGAAGCTTGAAATAGATTGATCTTC
TAAAAAAAAAAAGTAACTTTCTGAAAAGCTTCAGTTGATTTACAATCACAACCTTTTACTTACAG
GATTTTACGAATCTCAAGGTCTACTAATTTACGATCACGACCTTCAACTTACTAGATTTTACAAA
TCTCGCAAACCGCTAATTTATGATCACAACCTTCTACTTACAGGATTTTACAAATCTCATAGTCC
ACCAATTCACGACCACGACCTTCTACTTAAGGAATTTTACAAATCTCGCAGTCTACTAATTTATG
ATCACGACCTTCTACTTATAGAATTTTACGAATCTCCTGGTCCG
Found at i:104898996 original size:162 final size:162
Alignment explanation
Indices: 104898773--104899070 Score: 397
Period size: 162 Copynumber: 1.8 Consensus size: 162
104898763 ATGATCAAGG
* *
104898773 CCTTCTACTTTTGAGATTTTATGAATCTCATAGTCCGCTAATTCATGACCACGATCTTCTACTTA
1 CCTTCTACTTATGAGATTTTATGAATCTCATAGTCCGCTAATTCATGACCACGACCTTCTACTTA
* *
104898838 CGGGATTTTACT-AATCTTGCGGTGCACTGATTTACT-ATCACGACCTTCTACTTAA-GAAATTT
66 CGGGATTTTA-TGAATCTCGCGGTGCACTGATTTA-TGATCACAACCTTCTAC-TAACGAAATTT
104898900 TACGAATCTCGTGGTCCGCTGATTTAAGTTTATGA
128 TACGAATCTCGTGGTCCGCTGATTTAAGTTTATGA
* * * * * *
104898935 CCTTCTACTTATGGGATTTTACT-AATCTCATAGTCCTCTGATTTATGATCATGACCTTCTACTT
1 CCTTCTACTTATGAGATTTTA-TGAATCTCATAGTCCGCTAATTCATGACCACGACCTTCTACTT
* ** * *
104898999 ACGGGATTTTATGAATCTCGCGGTTCGTTGCTTTATGATCACAACCTTCTACTAACGTAATTTTA
65 ACGGGATTTTATGAATCTCGCGGTGCACTGATTTATGATCACAACCTTCTACTAACGAAATTTTA
104899064 CGAATCT
130 CGAATCT
104899071 AGGCGTGTTA
Statistics
Matches: 117, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
161 5 0.04
162 111 0.95
163 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (162 bp):
CCTTCTACTTATGAGATTTTATGAATCTCATAGTCCGCTAATTCATGACCACGACCTTCTACTTA
CGGGATTTTATGAATCTCGCGGTGCACTGATTTATGATCACAACCTTCTACTAACGAAATTTTAC
GAATCTCGTGGTCCGCTGATTTAAGTTTATGA
Found at i:104899018 original size:108 final size:108
Alignment explanation
Indices: 104898715--104899018 Score: 297
Period size: 108 Copynumber: 2.8 Consensus size: 108
104898705 ATTTACGATG
* * * * *
104898715 ACGACCTTCAACTTATGGGATTTTACAAATCTCGCA-AACTGCTAATTTATGATCAAGGCCTTCT
1 ACGACCTTCTACTTATGGGATTTTACTAATCTCGCAGTACT-CTGATTTATGATCAAGACCTTCT
** * *
104898779 ACTTTTGAGATTTTATGAATCTCATAGTCCGCTAATTCATGACC
65 ACTTAAGAGATTTTATGAATCTCGTAGTCCGCTAATTCAAGACC
* * * * * * *
104898823 ACGATCTTCTACTTACGGGATTTTACTAATCTTGCGGTGCACTGATTTACT-ATCACGACCTTCT
1 ACGACCTTCTACTTATGGGATTTTACTAATCTCGCAGTACTCTGATTTA-TGATCAAGACCTTCT
* * * * * ***
104898887 ACTTAAGAAATTTTACGAATCTCGTGGTCCGCTGATTTAAGTTT
65 ACTTAAGAGATTTTATGAATCTCGTAGTCCGCTAATTCAAGACC
* ** * *
104898931 ATGACCTTCTACTTATGGGATTTTACTAATCTCATAGTCCTCTGATTTATGATCATGACCTTCTA
1 ACGACCTTCTACTTATGGGATTTTACTAATCTCGCAGTACTCTGATTTATGATCAAGACCTTCTA
* *
104898996 CTTACGGGATTTTATGAATCTCG
66 CTTAAGAGATTTTATGAATCTCG
104899019 CGGTTCGTTG
Statistics
Matches: 155, Mismatches: 38, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
107 1 0.01
108 152 0.98
109 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (108 bp):
ACGACCTTCTACTTATGGGATTTTACTAATCTCGCAGTACTCTGATTTATGATCAAGACCTTCTA
CTTAAGAGATTTTATGAATCTCGTAGTCCGCTAATTCAAGACC
Found at i:104902606 original size:33 final size:33
Alignment explanation
Indices: 104902531--104902610 Score: 92
Period size: 33 Copynumber: 2.4 Consensus size: 33
104902521 GTGTATCTAT
** *
104902531 AAGTGTAAGACCATAGTTGGGCTATGGCATCTT
1 AAGTGTAAGACCATAACTGGGCTATGGCATCTC
*
104902564 AA-TGATAAGACCATAACTGGGTTATGGCAT-TAC
1 AAGTG-TAAGACCATAACTGGGCTATGGCATCT-C
104902597 AAGTGTAAGACCAT
1 AAGTGTAAGACCAT
104902611 GGCAATATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 3 0.08
33 35 0.88
34 2 0.05
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.28
Consensus pattern (33 bp):
AAGTGTAAGACCATAACTGGGCTATGGCATCTC
Found at i:104905271 original size:54 final size:54
Alignment explanation
Indices: 104905186--104905608 Score: 375
Period size: 54 Copynumber: 7.8 Consensus size: 54
104905176 AAAGCTGCAG
* * * * *
104905186 TTGATTTACAATCACGACATTTTAGTTACAGGATTTTATGAATCTCATGGTCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * **
104905240 TTGATTTACGATCATGACCTTCTACTTACAGGATTTTACGAATCTCGCAATCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * * *** **
104905294 TTGATTTACGATCACAACCTTCTATTTATAGGATTTTACGAATCTTGTGGTCTG
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * * * * * *
104905348 TTGATTTACGATCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGATCCT
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * ** * * *
104905402 TTGATTTACGATCACGACCTTTTACTTACTGGATTTTAAAAATTTCATGGGCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * *
104905456 TTTATTTACAATCACGACATTCTACTTAC-GAGATTTTATGAATCTCACGGTTCA
1 TTGATTTACGATCACGACCTTCTACTTACAG-GATTTTATGAATCTCACGGTCCA
* **
104905510 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCT-AGCGGTCTG
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCA-CGGTCCA
* * * * * *
104905564 CTGATTTACAATCATGATCTTCTACATGC-GTGATTTTATGAATCT
1 TTGATTTACGATCACGACCTTCTACTTACAG-GATTTTATGAATCT
104905609 TGCGGCCCGC
Statistics
Matches: 298, Mismatches: 67, Indels: 8
0.80 0.18 0.02
Matches are distributed among these distances:
53 3 0.01
54 294 0.99
55 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (54 bp):
TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
Found at i:104908369 original size:10 final size:10
Alignment explanation
Indices: 104908354--104908378 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
104908344 AGTTTGAGGT
104908354 TTTTTTTTTG
1 TTTTTTTTTG
104908364 TTTTTTTTTG
1 TTTTTTTTTG
104908374 TTTTT
1 TTTTT
104908379 GGTTTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:104911711 original size:22 final size:22
Alignment explanation
Indices: 104911683--104911727 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
104911673 TTAATAAAAA
104911683 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
104911705 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
104911727 A
1 A
104911728 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:104916308 original size:21 final size:22
Alignment explanation
Indices: 104916271--104916314 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
104916261 TTTAATAAAA
104916271 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
*
104916293 AAAATAT-TACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
104916314 A
1 A
104916315 CAATTCTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:104919767 original size:12 final size:14
Alignment explanation
Indices: 104919749--104919782 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
104919739 AAATTGGAAT
104919749 TTATTTTTAAA-TA
1 TTATTTTTAAATTA
104919762 -TATTTTTAAATTA
1 TTATTTTTAAATTA
104919775 TTATTTTT
1 TTATTTTT
104919783 TGAAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.53
13 2 0.11
14 7 0.37
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATTTTTAAATTA
Found at i:104919897 original size:18 final size:19
Alignment explanation
Indices: 104919874--104919912 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
104919864 CATTGTGTAC
104919874 TTAAAA-AAAATCCTAAAA
1 TTAAAAGAAAATCCTAAAA
*
104919892 TTAAAAGAAAATTCTAAAA
1 TTAAAAGAAAATCCTAAAA
104919911 TT
1 TT
104919913 CTAAAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.28
Consensus pattern (19 bp):
TTAAAAGAAAATCCTAAAA
Found at i:104923317 original size:2 final size:2
Alignment explanation
Indices: 104923305--104923335 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
104923295 AATATTAACA
104923305 AT AT AT CAT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
104923336 TTCCTTTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:104924627 original size:9 final size:10
Alignment explanation
Indices: 104924600--104924625 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
104924590 AAAATTTTTT
104924600 AAAAAAATTC
1 AAAAAAATTC
104924610 AAAAAAATTC
1 AAAAAAATTC
104924620 AAAAAA
1 AAAAAA
104924626 TTATTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:104925875 original size:5 final size:6
Alignment explanation
Indices: 104925850--104925874 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
104925840 AAAAAAAATA
104925850 TTATTT TTATTT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT T
104925875 AGTTAATACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:104926008 original size:106 final size:105
Alignment explanation
Indices: 104925866--104926121 Score: 449
Period size: 106 Copynumber: 2.4 Consensus size: 105
104925856 TTATTTTTAT
*
104925866 TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATACTTTTTTTAAAAAAAAAA
1 TTTTATTTT-GTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTTTTTTAAAAAAAAAA
*
104925931 TTATGTTTATATCCTTTTTTAAATTGTTAATATTATTATATA
65 TTATGTTTATATCC-TTTTTAAATTGTTAATATTATTATAGA
104925973 TTTTATTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTTTTTTAAAAAAAAAAT
1 TTTTATTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTTTTTTAAAAAAAAAAT
104926038 TATGTTTATATCCTTTTTAAATTGTTAATATTATTATAGA
66 TATGTTTATATCCTTTTTAAATTGTTAATATTATTATAGA
*
104926078 TTTTATTTTTGTTAATATCATTATTATGTTGTTAATAATTTTTA
1 TTTTA-TTTTGTTAATATCATTATTAAGTTGTTAAT-ATTTTTA
104926122 ATTTTTATGT
Statistics
Matches: 144, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
105 31 0.22
106 97 0.67
107 16 0.11
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (105 bp):
TTTTATTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTTTTTTAAAAAAAAAAT
TATGTTTATATCCTTTTTAAATTGTTAATATTATTATAGA
Found at i:104928585 original size:40 final size:40
Alignment explanation
Indices: 104928511--104928656 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
104928501 CCGCACCAAG
* * * * * *
104928511 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
104928551 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
104928591 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
104928631 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
104928657 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:104928671 original size:40 final size:40
Alignment explanation
Indices: 104928543--104928694 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
104928533 ATCACGATTT
* * * * *
104928543 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
104928583 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
104928623 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
104928663 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
104928695 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:104936691 original size:40 final size:40
Alignment explanation
Indices: 104936617--104936762 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
104936607 CCGCACCAAG
* * * * * *
104936617 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
104936657 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
104936697 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
104936737 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
104936763 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:104936777 original size:40 final size:40
Alignment explanation
Indices: 104936649--104936800 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
104936639 ATCACGATTT
* * * * *
104936649 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
104936689 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
104936729 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
104936769 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
104936801 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:104943719 original size:13 final size:13
Alignment explanation
Indices: 104943701--104943726 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104943691 TGTTTTCTCC
104943701 AAAATGAAAATGA
1 AAAATGAAAATGA
104943714 AAAATGAAAATGA
1 AAAATGAAAATGA
104943727 CTTGGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:104946644 original size:195 final size:199
Alignment explanation
Indices: 104946220--104946822 Score: 739
Period size: 204 Copynumber: 3.0 Consensus size: 199
104946210 AAGAAGGTAG
* *
104946220 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAATAATATCGTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
* * * * *
104946285 TAGAGGGTGACAACCCTAGTTAATGATACTAGGGTTTTTCTGTCTCACCTCCTTATATAAGGGGT
66 TA-AGGGTGACAA-CC----TAATGATACTAGGGTTTGT-TGTCCCACCTCATTACATGAGGGGT
* * * * *
104946350 TTTGGGTCTCTCTCACATCGAATCCAATTACGAGTACTTCTTCGGCTTTTTGGACCTAGTACTCT
124 TTTAGGTCTCTCTCACATCGAGTCCAATTACGAGTACTTCTTAGAC-TTTTGGACCCAGTACTCT
104946415 ATAATATGATCC
188 ATAATATGATCC
*
104946427 AACCTTTATAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
* * * *
104946492 TAAGGG-G-CGA-C-AATGATACTAGGGTTTGTTGTCCCACCTCTTTACATGAGAGATTTTAGGT
66 TAAGGGTGACAACCTAATGATACTAGGGTTTGTTGTCCCACCTCATTACATGAGGGGTTTTAGGT
* * * * *
104946553 CTTTCTTACATCGAGCCCAATTATGAGTACTTCTTAGACTTTTGGACCCAGTACTCTGTAATATG
131 CTCTCTCACATCGAGTCCAATTACGAGTACTTCTTAGACTTTTGGACCCAGTACTCTATAATATG
104946618 ATCC
196 ATCC
**
104946622 AACCTTTGTAGAGTCATAGAAGTTTATTTTCACTAG-AAAACAATATCCTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
* * * *
104946686 TGAGGGTGACAACCCTAGTTAATGATACTAAGGTTTTGTTGTCCCATCTCAGTACATGAGGGGTT
66 TAAGGGTGACAA-CC----TAATGATACT-AGGGTTTGTTGTCCCACCTCATTACATGAGGGGTT
* * * * *
104946751 TTAGGTCTCTCTCACATTGAGTCCAATTACGAGTACTTCTTGGGCCTTTTAGACCCAATACTCTA
125 TTAGGTCTCTCTCACATCGAGTCCAATTACGAGTACTTCTT-AGACTTTTGGACCCAGTACTCTA
104946816 TAATATG
189 TAATATG
104946823 GTCTAACCCG
Statistics
Matches: 343, Mismatches: 42, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
194 33 0.10
195 62 0.18
196 59 0.17
197 17 0.05
198 1 0.00
202 1 0.00
203 9 0.03
204 67 0.20
205 26 0.08
206 4 0.01
207 64 0.19
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (199 bp):
AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
TAAGGGTGACAACCTAATGATACTAGGGTTTGTTGTCCCACCTCATTACATGAGGGGTTTTAGGT
CTCTCTCACATCGAGTCCAATTACGAGTACTTCTTAGACTTTTGGACCCAGTACTCTATAATATG
ATCC
Found at i:104947095 original size:18 final size:18
Alignment explanation
Indices: 104947072--104947106 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
104947062 AGGATTGCAA
*
104947072 GTTTCCATTTTCATTTTC
1 GTTTCCATTTCCATTTTC
104947090 GTTTCCATTTCCATTTT
1 GTTTCCATTTCCATTTT
104947107 GAAAACCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.23, G:0.06, T:0.60
Consensus pattern (18 bp):
GTTTCCATTTCCATTTTC
Found at i:104953229 original size:18 final size:18
Alignment explanation
Indices: 104953193--104953230 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
104953183 TGATTTTCAG
*
104953193 GAAGATAAACAAAGGGTT
1 GAAGATAAACAAAGAGTT
104953211 GAAGA-AAACAATAGAGTT
1 GAAGATAAACAA-AGAGTT
104953229 GA
1 GA
104953231 GATCTTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.53, C:0.05, G:0.26, T:0.16
Consensus pattern (18 bp):
GAAGATAAACAAAGAGTT
Found at i:104958019 original size:2 final size:2
Alignment explanation
Indices: 104958012--104958040 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
104958002 AGAACTTTTG
104958012 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
104958041 ATTTACTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:104959324 original size:23 final size:22
Alignment explanation
Indices: 104959283--104959328 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
104959273 TATATCACAT
104959283 ATATAATTTTTAAAATTAATATA
1 ATATAATTTTTAAAATTAA-ATA
*
104959306 ATATAATATTTT-AACTTAAATA
1 ATATAAT-TTTTAAAATTAAATA
104959328 A
1 A
104959329 AAATAGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATAATTTTTAAAATTAAATA
Found at i:104960785 original size:23 final size:22
Alignment explanation
Indices: 104960767--104960832 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 22
104960757 AAATTTTGAT
104960767 TTATTTAGTGATAATATTTAGAA
1 TTATTTAGTGATAATATTTAG-A
*
104960790 TTATTTAGTAATAATATTTAGCA
1 TTATTTAGTGATAATATTTAG-A
104960813 TTATTTAGTGATAATATTTA
1 TTATTTAGTGATAATATTTA
104960833 AGAAAAATCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.50
Consensus pattern (22 bp):
TTATTTAGTGATAATATTTAGA
Found at i:104960786 original size:13 final size:13
Alignment explanation
Indices: 104960768--104960832 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
104960758 AATTTTGATT
104960768 TATTTAGTGATAA
1 TATTTAGTGATAA
*
104960781 TATTTA--GA-AT
1 TATTTAGTGATAA
*
104960791 TATTTAGTAATAA
1 TATTTAGTGATAA
*
104960804 TATTTAG-CAT--
1 TATTTAGTGATAA
104960814 TATTTAGTGATAA
1 TATTTAGTGATAA
104960827 TATTTA
1 TATTTA
104960833 AGAAAAATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
10 14 0.34
11 4 0.10
12 3 0.07
13 20 0.49
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:104963849 original size:47 final size:47
Alignment explanation
Indices: 104963745--104964098 Score: 248
Period size: 47 Copynumber: 7.5 Consensus size: 47
104963735 GTGCGCCAGC
* * * * *
104963745 GTAAGACATGTTTGGGAAATGCCTCGGC--CACATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCATCACA-GATGAGAGCTAGT
* * * *
104963791 GT-AGTACCATGTCTGGGACATGGCGTCGACATC-CAGACGAGGGCTAGT
1 GTAAG-A-CATGTCTGGGACAT-GCATCGGCATCACAGATGAGAGCTAGT
* * * * *
104963839 GTAAGACATGTCTGGGACATGCGTCAGCCAT-AC-TATGATAGCCAGT
1 GTAAGACATGTCTGGGACATGCATC-GGCATCACAGATGAGAGCTAGT
* * * *
104963885 GTAAGACCATGTTTGGGACATGGCATCGGCA-CAGAGATGAGTGCCAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCATCACAGATGAGAGCTAGT
* * *
104963933 GTAAGATATGTCTGGGACATGCATCGGCCTCGACAGA-GATAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCATC-ACAGATGAGAGCTAGT
* * * *
104963980 GTAAGACGTGTCTGGGACACGCATCGGC-T-A-AGA-GTTGTGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCATCACAGATG-AGAGCTAGT
* * *
104964024 GTAAGACATGTCTGGGACATGCATCAGCA-CGCGTATATGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCATCAC--AGATGAGAGCTAGT
104964072 GTAAGACCATGTCTGGGACATGGCATC
1 GTAAGA-CATGTCTGGGACAT-GCATC
104964099 AGCAATATAT
Statistics
Matches: 244, Mismatches: 41, Indels: 42
0.75 0.13 0.13
Matches are distributed among these distances:
43 4 0.02
44 32 0.13
45 2 0.01
46 31 0.13
47 93 0.38
48 57 0.23
49 19 0.08
50 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATCGGCATCACAGATGAGAGCTAGT
Found at i:104963906 original size:94 final size:93
Alignment explanation
Indices: 104963745--104964098 Score: 332
Period size: 94 Copynumber: 3.8 Consensus size: 93
104963735 GTGCGCCAGC
* * * * * *
104963745 GTAAGACATGTTTGGGAAATGCCTCGGCCACATTATGAGAGCCAGTGT-AGTACCATGTCTGGGA
1 GTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAG-ACCATGTCTGGGA
* * * *
104963809 CATGGCGTCGACATCCAGACGAGGGCTAGT
65 CATGGCATCGGCATCAAGA-GAGTGCTAGT
* * *
104963839 GTAAGACATGTCTGGGACATGCGTCAGCCATACTATGATAGCCAGTGTAAGACCATGTTTGGGAC
1 GTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGAC
*
104963904 ATGGCATCGGCA-CAGAGATGAGTGCCAGT
66 ATGGCATCGGCATCA-AGA-GAGTGCTAGT
* * * *
104963933 GTAAGATATGTCTGGGACATGCATCGGCC-TCGAC-A-GAGATAGCTAGTGTAAGA-CGTGTCTG
1 GTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGTCTG
* *
104963994 GGACA-CGCATCGGC-T-AAGAGTTGTGCTAGT
62 GGACATGGCATCGGCATCAAGAG-AGTGCTAGT
* *
104964024 GTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCTAGTGTAAGACCATGTCTGG
1 GTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTCTGG
104964088 GACATGGCATC
63 GACATGGCATC
104964099 AGCAATATAT
Statistics
Matches: 216, Mismatches: 28, Indels: 32
0.78 0.10 0.12
Matches are distributed among these distances:
90 1 0.00
91 35 0.16
92 14 0.06
93 27 0.12
94 122 0.56
95 17 0.08
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (93 bp):
GTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGCATCAAGAGAGTGCTAGT
Found at i:104964098 original size:141 final size:142
Alignment explanation
Indices: 104963778--104964098 Score: 345
Period size: 141 Copynumber: 2.3 Consensus size: 142
104963768 TCGGCCACAT
* *
104963778 TATGAGAGCCAGTGT-AGTACCATGTCTGGGACATGGCGTCGACATCCAGACGAGGGCTAGTGTA
1 TATGAGAGCCAGTGTAAG-ACCATGTCTGGGACATGGCATCGACATCCAGACGAGAGCTAGTGTA
* * * * *
104963842 AGACATGTCTGGGACATGCGTCAGCCATACTATGATAGCCAGTGTAAGACCATGTTTGGGACATG
65 AGACATGTCTGGGACACGCATCAGCAAGACTATGATAGCCAGTGTAAGACCATGTCTGGGACATG
*
104963907 GCATCGGCACAGA
130 GCATCAGCACAGA
* * * * * *
104963920 GATGAGTGCCAGTGTAAGA-TATGTCTGGGACAT-GCATCGGCCTCGACAGA-GATAGCTAGTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC--CAGACGAGAGCTAGTGT
* * * *
104963982 AAGACGTGTCTGGGACACGCATCGGCTAAGAGT-TG-T-GCTAGTGTAAGA-CATGTCTGGGACA
64 AAGACATGTCTGGGACACGCATCAGC-AAGACTATGATAGCCAGTGTAAGACCATGTCTGGGACA
*
104964043 T-GCATCAGCACGCGTA
128 TGGCATCAGCAC-AG-A
*
104964059 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
104964099 AGCAATATAT
Statistics
Matches: 148, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
137 9 0.06
138 14 0.09
139 28 0.19
140 22 0.15
141 52 0.35
142 21 0.14
143 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (142 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCCAGACGAGAGCTAGTGTAA
GACATGTCTGGGACACGCATCAGCAAGACTATGATAGCCAGTGTAAGACCATGTCTGGGACATGG
CATCAGCACAGA
Found at i:104971012 original size:30 final size:30
Alignment explanation
Indices: 104970950--104971012 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
104970940 ATCGATTTTC
* **
104970950 AAGTATAGTGGCAAAATGGTCATTTTGTCA
1 AAGTATAGGGGCAAAATGGTCATTTTACCA
*
104970980 AAGTCTAGGGGCAAAATGGTCATTTTACCA
1 AAGTATAGGGGCAAAATGGTCATTTTACCA
104971010 AAG
1 AAG
104971013 ATGTGAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (30 bp):
AAGTATAGGGGCAAAATGGTCATTTTACCA
Found at i:104971422 original size:47 final size:46
Alignment explanation
Indices: 104971351--104971712 Score: 249
Period size: 47 Copynumber: 7.7 Consensus size: 46
104971341 TGATTTGTGT
*
104971351 GCCAGTGTAAGACATGTCTGGGACATGCCTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * *
104971397 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATC-TAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAT-TATGAGA
* * * * * *
104971445 GCTAGTGTAAGACATGTCTGGGACATGCGT-AGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * ** *
104971490 ACCAGGGTAAGACCATGTCTGGGACATGGCATCGG-CACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-TTATGAGA
* * *
104971538 GCCAGTGTGAGACATGTCTGGGACATGCATCGGCCTTGACA-GA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACATTATGAGA
* * * * * *
104971585 GCCAGTGTAAGACGTGTCTGGGATACGCATCGGCTA-A-TA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGA
* * *
104971629 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA--CAT-TATGAGA
* *
104971677 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
104971713 ATTATATCCC
Statistics
Matches: 244, Mismatches: 48, Indels: 43
0.73 0.14 0.13
Matches are distributed among these distances:
43 4 0.02
44 29 0.12
45 13 0.05
46 38 0.16
47 84 0.34
48 53 0.22
49 14 0.06
50 9 0.04
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:104971615 original size:93 final size:92
Alignment explanation
Indices: 104971349--104971713 Score: 341
Period size: 93 Copynumber: 3.9 Consensus size: 92
104971339 GGTGATTTGT
* *
104971349 GTGCCAGTGTAAGACATGTCTGGGACATGCCTCGGCC-ACATTATGAGAGCCAGTGTAAGACCAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACA--A-GATAGCCAGTGTAAGACCAT
*
104971413 GTCTGGGACATGGCATCGGCATC-TAGACGA
63 GTCTGGGACATGGCATCGGCA-CATAGATGA
* * * * * * *
104971443 GGGCTAGTGTAAGACATGTCTGGGACATGCGT-AGCCATACTATGATAACCAGGGTAAGACCATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TAC-AAGATAGCCAGTGTAAGACCATG
*
104971507 TCTGGGACATGGCATCGGCACAGAGATGA
64 TCTGGGACATGGCATCGGCACATAGATGA
* *
104971536 GTGCCAGTGTGAGACATGTCTGGGACATGCATCGGCCTTGACAGAGATAGCCAGTGTAAGA-CGT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-T-ACA-AGATAGCCAGTGTAAGACCAT
* * *
104971600 GTCTGGGATA-CGCATCGGCTA-ATAG-T-T
63 GTCTGGGACATGGCATCGGC-ACATAGATGA
* * * * * *
104971627 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCGTATATGAGAGCTAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-G---GCCTACAAGATAGCCAGTGTAAGACCA
*
104971692 TGTCTAGGACATGGCATCGGCA
62 TGTCTGGGACATGGCATCGGCA
104971714 TTATATCCCA
Statistics
Matches: 222, Mismatches: 35, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
91 31 0.14
92 17 0.08
93 98 0.44
94 55 0.25
95 20 0.09
96 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (92 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAGATAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCACATAGATGA
Found at i:104971689 original size:187 final size:186
Alignment explanation
Indices: 104971349--104971713 Score: 440
Period size: 187 Copynumber: 2.0 Consensus size: 186
104971339 GGTGATTTGT
* *
104971349 GTGCCAGTGTAAGACATGTCTGGGACATGCCTCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
* * *
104971414 TCTGGGACATGGCATCGGCATCTAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCGTAGCC
66 TCTGGGACATCGCATCGGCATATAGA-GAGGGCTAGTGTAAGACATGTCTGGGACATGCATAGCC
*
104971479 ATACTATGATAACCAGGGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGA
130 ATACTATGATAACCAGGGTAAGACCATGTCTAGGACATGGCATCGGCACAGAGATGA
* *
104971536 GTGCCAGTGTGAGACATGTCTGGGACATGCATCGGCCTTGACA-GA-GATAGCCAGTGTAAGA-C
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACATGATGAGAGCCAGTGTAAGACC
* * ** *
104971598 GTGTCTGGGATA-CGCATCGGC-TAATAG-TTGTGCTAGTGTAAGACATGTCTGGGACATGCATC
63 ATGTCTGGGACATCGCATCGGCAT-ATAGAGAGGGCTAGTGTAAGACATGTCTGGGACATGCAT-
* * *
104971660 AG-CATGCGTAT-ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
126 AGCCATAC-TATGAT-A-A-CCAGGGTAAGACCATGTCTAGGACATGGCATCGGCA
104971714 TTATATCCCA
Statistics
Matches: 153, Mismatches: 16, Indels: 18
0.82 0.09 0.10
Matches are distributed among these distances:
184 36 0.24
185 7 0.05
186 12 0.08
187 79 0.52
188 15 0.10
189 1 0.01
190 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (186 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
TCTGGGACATCGCATCGGCATATAGAGAGGGCTAGTGTAAGACATGTCTGGGACATGCATAGCCA
TACTATGATAACCAGGGTAAGACCATGTCTAGGACATGGCATCGGCACAGAGATGA
Found at i:104973897 original size:21 final size:21
Alignment explanation
Indices: 104973881--104973921 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
104973871 TATCAAACTG
104973881 AGCCAAACCCAAGTCAAAATA
1 AGCCAAACCCAAGTCAAAATA
*
104973902 AGCCAAACCCAAGTTAAAAT
1 AGCCAAACCCAAGTCAAAAT
104973922 GCAAGTGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.27, G:0.10, T:0.12
Consensus pattern (21 bp):
AGCCAAACCCAAGTCAAAATA
Found at i:104976038 original size:26 final size:26
Alignment explanation
Indices: 104976005--104976114 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
104975995 TGATACAAAT
104976005 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
104976031 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
104976057 AGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
104976083 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
104976109 TGATAA
1 TGATAA
104976115 GAATTACATG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:104982179 original size:50 final size:50
Alignment explanation
Indices: 104982108--104982213 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
104982098 TAAAAAGACC
*
104982108 ACTTTCCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
1 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
104982158 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
1 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
104982208 ACTTAC
1 ACTTAC
104982214 TACTATTGTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (50 bp):
ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
Found at i:104988528 original size:47 final size:47
Alignment explanation
Indices: 104988475--104988789 Score: 488
Period size: 47 Copynumber: 6.7 Consensus size: 47
104988465 GATTTTATGC
104988475 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
*
104988522 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGT
* *
104988571 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
*
104988618 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
104988665 GATAAATGTG-AAGATGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAG-TGTATATATGTGATAAGGCCGAATGGCCGATGT
* * * *
104988712 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
104988759 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
104988790 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 3 0.01
47 200 0.80
48 3 0.01
49 45 0.18
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
Found at i:104992118 original size:22 final size:22
Alignment explanation
Indices: 104992093--104992137 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
104992083 AAGCACCAAC
* *
104992093 GTTGCTGTTGCACATTGCTATT
1 GTTGCTGTCGCACATTGCCATT
104992115 GTTGCTGTCGCACATTGCCATT
1 GTTGCTGTCGCACATTGCCATT
104992137 G
1 G
104992138 CTGTCGCACG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.13, C:0.22, G:0.24, T:0.40
Consensus pattern (22 bp):
GTTGCTGTCGCACATTGCCATT
Found at i:104992155 original size:19 final size:19
Alignment explanation
Indices: 104992116--104992157 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
104992106 ATTGCTATTG
*
104992116 TTGCTGTCGCACATTGCCA
1 TTGCTGTCGCACACTGCCA
* *
104992135 TTGCTGTCGCACGCTGTCA
1 TTGCTGTCGCACACTGCCA
104992154 TTGC
1 TTGC
104992158 CACCATACCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.31, G:0.24, T:0.33
Consensus pattern (19 bp):
TTGCTGTCGCACACTGCCA
Found at i:104999571 original size:66 final size:66
Alignment explanation
Indices: 104999479--104999635 Score: 208
Period size: 66 Copynumber: 2.4 Consensus size: 66
104999469 CCCCAAACAT
* * * * *
104999479 GCCTGTGT-CTCAGGCCATGTGGAAACAGTGCATACATACTGACTTGTATCACACGGTCGAGGAC
1 GCCTGTGTGC-CAGGCCATGTGAAAACAGGGCATACATACTAACTTGTATCACACGGCCAAGGAC
104999543 AC
65 AC
* * *
104999545 GCCTGTGTGCCAGGCCGTGTAAAAACAGGGCATACATACTAACTTTTATCACACGGCCAAGGACA
1 GCCTGTGTGCCAGGCCATGTGAAAACAGGGCATACATACTAACTTGTATCACACGGCCAAGGACA
104999610 C
66 C
* *
104999611 GCCCGTATGCCAGGCCATGTGAAAA
1 GCCTGTGTGCCAGGCCATGTGAAAA
104999636 TTGGAGGGTA
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
66 77 0.99
67 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (66 bp):
GCCTGTGTGCCAGGCCATGTGAAAACAGGGCATACATACTAACTTGTATCACACGGCCAAGGACA
C
Found at i:105004709 original size:3 final size:3
Alignment explanation
Indices: 105004701--105004743 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
105004691 TATTTATAAA
* *
105004701 ATT ATT ATT ATT ATA ATT ATT ATT ATT ATA ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
105004744 GATAGGAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:105004718 original size:15 final size:15
Alignment explanation
Indices: 105004700--105004743 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
105004690 ATATTTATAA
105004700 AATTATTATTATTAT
1 AATTATTATTATTAT
105004715 AATTATTATTATTAT
1 AATTATTATTATTAT
105004730 AATTATTATTATTA
1 AATTATTATTATTA
105004744 GATAGGAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:105011334 original size:13 final size:13
Alignment explanation
Indices: 105011316--105011358 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
105011306 GATTTTAAAT
105011316 TATTTAGTGATAA
1 TATTTAGTGATAA
105011329 TATTTAG-GAT--
1 TATTTAGTGATAA
*
105011339 TATTTAGTGACAA
1 TATTTAGTGATAA
105011352 TATTTAG
1 TATTTAG
105011359 GAAAATATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 3 0.12
13 14 0.54
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:105011340 original size:23 final size:23
Alignment explanation
Indices: 105011314--105011360 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
105011304 TTGATTTTAA
*
105011314 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGACAATATTTAGG
105011337 ATTATTTAGTGACAATATTTAGG
1 ATTATTTAGTGACAATATTTAGG
105011360 A
1 A
105011361 AAATATAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (23 bp):
ATTATTTAGTGACAATATTTAGG
Found at i:105011586 original size:7 final size:6
Alignment explanation
Indices: 105011552--105011584 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
105011542 CCTTTCAAGG
105011552 CCCTTT CCCTTT CCCTTT CCCTTT CCACTTT CC
1 CCCTTT CCCTTT CCCTTT CCCTTT CC-CTTT CC
105011585 ACAATTCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.03, C:0.52, G:0.00, T:0.45
Consensus pattern (6 bp):
CCCTTT
Found at i:105012319 original size:28 final size:29
Alignment explanation
Indices: 105012265--105012332 Score: 111
Period size: 28 Copynumber: 2.3 Consensus size: 29
105012255 GAATTTGTTT
105012265 TTATTTTATTTTATTACACTTTGTATTTCC
1 TTATTTTA-TTTATTACACTTTGTATTTCC
*
105012295 TTATTTTATTT-TTACACTTTTTATTTCC
1 TTATTTTATTTATTACACTTTGTATTTCC
105012323 TTATTTTATT
1 TTATTTTATT
105012333 ATCTTAATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
28 26 0.70
29 3 0.08
30 8 0.22
ACGTcount: A:0.19, C:0.12, G:0.01, T:0.68
Consensus pattern (29 bp):
TTATTTTATTTATTACACTTTGTATTTCC
Found at i:105012878 original size:2 final size:2
Alignment explanation
Indices: 105012871--105012899 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
105012861 AAATGTACAA
105012871 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105012900 AAATAATAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:105018094 original size:16 final size:16
Alignment explanation
Indices: 105018073--105018107 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
105018063 TGTTGTTTGT
105018073 ACTTTAAAATAAGCCA
1 ACTTTAAAATAAGCCA
105018089 ACTTTAAAATAAGCCA
1 ACTTTAAAATAAGCCA
105018105 ACT
1 ACT
105018108 AAACAAGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (16 bp):
ACTTTAAAATAAGCCA
Found at i:105019829 original size:418 final size:417
Alignment explanation
Indices: 105019041--105019879 Score: 1111
Period size: 418 Copynumber: 2.0 Consensus size: 417
105019031 GAATTTAATG
* * * *
105019041 ACAAACTAAATTGATTGTTTCTGAATGAACAATAATATCCAAAATTTTCTAACAAAGAAACATAA
1 ACAAACTAAATTGAGTGTTTCTAAATGAACAATAATATCCAAAATTTTCCAACAAAGAAACAGAA
* * * *
105019106 ACTAAATTCTGTCTAAAATATAGTACAACAAAATTGTCTTTTAAATCTAAATAAAATTAGAAAAA
66 ACTAAATTCTGTCTAAAAGAGAGTACAACAAAACTGTCTTTTAAATCCAAATAAAATTAGAAAAA
*
105019171 AATCCTAATAACAACCTAAAATACCCAATTACTTCCACTTCCACCGATTTTCCATCGCCTACGAA
131 AATCCTAATAACAACCTAAAATACCCAATTACTTCCACTTCCACCGATTTTCCATCGCCCACGAA
* ** *
105019236 GATGTGTATTTTACCATTACTTGACTTTCGGTAGCTTAAACAACCCTGTATAGAAGCACTTATGT
196 GATGTGTATTTCACCACCACTTGACTTTCGGTAGCTTAAACAACCCTGCATAGAAGCACTTATGT
* * * * *
105019301 GAGTAGTAGAACTAGAACCTATCCACCAGATGTTTCTAGGTATTAAAACTAAATTAACCTTAGAA
261 GAGTAGTAGAACTAAAACCTATCCACCAGATGTTTCTAGGGACTAAAACTAAATTAACCTCAAAA
* *
105019366 TAAACTAAAGTAAGAATTACACCTTTATTTGCACGCCAAGTGTGATATGT-GACACATTCTTTCT
326 CAAACCAAAGTAAGAATTACACCTTTATTTGCACGCCAAGTGTGATATGTGGA-ACATTCTTTCT
*
105019430 TCACATGTCCATAATCGTTACAAAAGAA
390 TCACATGTCCAGAATCGTTACAAAAGAA
*
105019458 ACAAACTAAATTGAGTGTTT-TCAAATGAACAATAATATCCAAATTTTTCCAACAAAGAAACAGA
1 ACAAACTAAATTGAGTGTTTCT-AAATGAACAATAATATCCAAAATTTTCCAACAAAGAAACAGA
*
105019522 AACTGAATT-TCGTCTAAAAGACGA-TACAACAAAACTGTCTTTTAAATCCAAATAAAAATTA-A
65 AACTAAATTCT-GTCTAAAAGA-GAGTACAACAAAACTGTCTTTTAAATCCAAAT-AAAATTAGA
* * * * * *
105019584 AAAATATCCCTAATAACAACCTAAAA-AGCCCAATTGCTTCTACTTCTACCGATTTTTCATTGCC
127 AAAAAAT-CCTAATAACAACCTAAAATA-CCCAATTACTTCCACTTCCACCGATTTTCCATCGCC
* * * * **
105019648 CATGAAGATGTGTCTTTCACCACCATTTGTCTTTCGGTAGCTTAGGCAACCCTGCATAGGAA-CA
190 CACGAAGATGTGTATTTCACCACCACTTGACTTTCGGTAGCTTAAACAACCCTGCATA-GAAGCA
* * *
105019712 CTTATGTGAGTAGTAGAACTAAAATCTATCCACCA-AGTGTTTCTAGGGACTGAAACTAAATTAC
254 CTTATGTGAGTAGTAGAACTAAAACCTATCCACCAGA-TGTTTCTAGGGACTAAAACTAAATTAA
** * * *
105019776 CCTCAAAACAAACCAAAGTAAGAATTATTCTTTTATTTGCATG-CAAGGTGTGATATTTGGAACA
318 CCTCAAAACAAACCAAAGTAAGAATTACACCTTTATTTGCACGCCAA-GTGTGATATGTGGAACA
** *
105019840 TTCTTTCTTCATGTGTCCAGACTCGTTACAAAAGAA
382 TTCTTTCTTCACATGTCCAGAATCGTTACAAAAGAA
105019876 ACAA
1 ACAA
105019880 CTTTCTATAA
Statistics
Matches: 366, Mismatches: 46, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
416 2 0.01
417 113 0.31
418 246 0.67
419 5 0.01
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (417 bp):
ACAAACTAAATTGAGTGTTTCTAAATGAACAATAATATCCAAAATTTTCCAACAAAGAAACAGAA
ACTAAATTCTGTCTAAAAGAGAGTACAACAAAACTGTCTTTTAAATCCAAATAAAATTAGAAAAA
AATCCTAATAACAACCTAAAATACCCAATTACTTCCACTTCCACCGATTTTCCATCGCCCACGAA
GATGTGTATTTCACCACCACTTGACTTTCGGTAGCTTAAACAACCCTGCATAGAAGCACTTATGT
GAGTAGTAGAACTAAAACCTATCCACCAGATGTTTCTAGGGACTAAAACTAAATTAACCTCAAAA
CAAACCAAAGTAAGAATTACACCTTTATTTGCACGCCAAGTGTGATATGTGGAACATTCTTTCTT
CACATGTCCAGAATCGTTACAAAAGAA
Found at i:105021614 original size:93 final size:93
Alignment explanation
Indices: 105021502--105021673 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105021492 GCCCATAAGT
* *
105021502 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105021567 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105021595 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105021660 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
105021674 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105021669 original size:46 final size:46
Alignment explanation
Indices: 105021494--105021669 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
105021484 TGTAACCCGC
* * *
105021494 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
105021540 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
105021590 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
105021633 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105021670 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:105023970 original size:30 final size:30
Alignment explanation
Indices: 105023926--105024014 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
105023916 CAAAGATAAC
105023926 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
105023955 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
105023985 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
105024015 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:105023974 original size:15 final size:15
Alignment explanation
Indices: 105023926--105024005 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
105023916 CAAAGATAAC
*
105023926 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
105023940 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
105023955 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
105023970 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
105023985 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
105024000 AAGAAA
1 AAGAAA
105024006 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:105024014 original size:15 final size:15
Alignment explanation
Indices: 105023937--105024014 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
105023927 AGAAAACCGA
105023937 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
105023952 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
105023966 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
105023981 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
105023997 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
105024012 ATA
1 ATA
105024015 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:105026312 original size:30 final size:30
Alignment explanation
Indices: 105026268--105026356 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
105026258 CAAAGATAAC
105026268 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
105026297 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
105026327 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
105026357 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:105026316 original size:15 final size:15
Alignment explanation
Indices: 105026268--105026347 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
105026258 CAAAGATAAC
*
105026268 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
105026282 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
105026297 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
105026312 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
105026327 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
105026342 AAGAAA
1 AAGAAA
105026348 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:105026356 original size:15 final size:15
Alignment explanation
Indices: 105026279--105026356 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
105026269 AGAAAACCGA
105026279 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
105026294 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
105026308 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
105026323 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
105026339 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
105026354 ATA
1 ATA
105026357 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:105027403 original size:93 final size:93
Alignment explanation
Indices: 105027291--105027462 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105027281 GCCCATAAGT
* *
105027291 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105027356 CGAGTTCGGATGCCTAGTTACATCTCAG
66 CGAGTTCGGATGCCTAGTTACATCTCAG
*
105027384 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105027449 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
105027463 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAG
Found at i:105027458 original size:46 final size:46
Alignment explanation
Indices: 105027283--105027458 Score: 241
Period size: 46 Copynumber: 3.8 Consensus size: 46
105027273 TGTAACCTGC
* * *
105027283 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
105027329 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
*
105027379 -C-TCAG-GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
105027422 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105027459 TGCCCAAATA
Statistics
Matches: 114, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 68 0.60
47 32 0.28
48 3 0.03
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:105032619 original size:22 final size:21
Alignment explanation
Indices: 105032560--105032633 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 21
105032550 CCTCTTAATC
*
105032560 TTATTTTTATTTCAATCGAGTTT-
1 TTATTTTTATTT-AA--GATTTTA
* *
105032583 TTATTTACTTATTTATGTTTTTA
1 TTATTT--TTATTTAAGATTTTA
105032606 TTCATTTTTATTTAAGATTTTA
1 TT-ATTTTTATTTAAGATTTTA
105032628 TTATTT
1 TTATTT
105032634 GTTTTTTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
21 4 0.10
22 19 0.45
23 8 0.19
24 5 0.12
25 6 0.14
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.66
Consensus pattern (21 bp):
TTATTTTTATTTAAGATTTTA
Found at i:105032821 original size:31 final size:31
Alignment explanation
Indices: 105032764--105032825 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
105032754 TTTAAACATG
105032764 TATTATTCAAAATTTATACATTATACATTATA
1 TATTATTCAAAATTTATA-ATTATACATTATA
*
105032796 TATTATTTTAAAATTTAT-ATTATACATTAT
1 TATTA-TTCAAAATTTATAATTATACATTAT
105032826 TTTTATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 12 0.43
32 5 0.18
33 11 0.39
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (31 bp):
TATTATTCAAAATTTATAATTATACATTATA
Found at i:105033055 original size:30 final size:31
Alignment explanation
Indices: 105032990--105033058 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
105032980 TATTTTATAC
* * **
105032990 ATATAATTTTTTTTTTAAAATCTATTTGTAT
1 ATATAATTGTGTTTTTAAAATCTATTTACAT
*
105033021 ATATAATTGTGTTTTTAAAATTTA-TTACAT
1 ATATAATTGTGTTTTTAAAATCTATTTACAT
105033051 ATATAATT
1 ATATAATT
105033059 TATGATAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
30 12 0.36
31 21 0.64
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (31 bp):
ATATAATTGTGTTTTTAAAATCTATTTACAT
Found at i:105033675 original size:20 final size:22
Alignment explanation
Indices: 105033628--105033678 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
105033618 ATCTATTATG
*
105033628 TATATTATATCTTATCATGTATT
1 TATATTAT-TCTTATCATATATT
105033651 T-TATTATTCTT-TCATAT-TT
1 TATATTATTCTTATCATATATT
105033670 TATATTATT
1 TATATTATT
105033679 TAAGTTATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 12 0.46
21 4 0.15
22 6 0.23
23 1 0.04
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (22 bp):
TATATTATTCTTATCATATATT
Found at i:105034804 original size:25 final size:24
Alignment explanation
Indices: 105034766--105034825 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 24
105034756 GTTTCAACAG
105034766 AAAATATATATTATTTTAA-AAATTAT
1 AAAA-ATATATTA-TTTAATAAATT-T
105034792 AAAAATATATTATTTAATAAATTT
1 AAAAATATATTATTTAATAAATTT
105034816 AAAGAATATA
1 AAA-AATATA
105034826 CACGTAAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 9 0.28
25 19 0.59
26 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
AAAAATATATTATTTAATAAATTT
Found at i:105035449 original size:11 final size:11
Alignment explanation
Indices: 105035433--105035492 Score: 52
Period size: 11 Copynumber: 5.2 Consensus size: 11
105035423 TTGAATAATG
105035433 AATTAAAAATT
1 AATTAAAAATT
105035444 AATT-AAAA-T
1 AATTAAAAATT
105035453 AATTAAAAATAT
1 AATTAAAAAT-T
*
105035465 ATTATTTAAAAACT
1 A--A-TTAAAAATT
105035479 AATTAAAAAGTT
1 AATTAAAAA-TT
105035491 AA
1 AA
105035493 AAGTGAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
9 5 0.12
10 8 0.20
11 11 0.28
12 6 0.15
14 3 0.08
15 7 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (11 bp):
AATTAAAAATT
Found at i:105041288 original size:13 final size:13
Alignment explanation
Indices: 105041270--105041294 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105041260 TATTAAATAT
105041270 AAATTATTTATTA
1 AAATTATTTATTA
105041283 AAATTATTTATT
1 AAATTATTTATT
105041295 TATTAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AAATTATTTATTA
Found at i:105072058 original size:17 final size:16
Alignment explanation
Indices: 105072017--105072065 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
105072007 AATTGGTATA
105072017 TATATTTT-GAAATTT
1 TATATTTTAGAAATTT
*
105072032 TATATATTTAGAATTATT
1 TATAT-TTTAGAAAT-TT
*
105072050 TATATTTTATAAATTT
1 TATATTTTAGAAATTT
105072066 ATTAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 5 0.18
16 5 0.18
17 11 0.39
18 7 0.25
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (16 bp):
TATATTTTAGAAATTT
Found at i:105072103 original size:18 final size:17
Alignment explanation
Indices: 105072056--105072106 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
105072046 TATTTATATT
105072056 TTATAAATTTATTAAAAA
1 TTATAAATTT-TTAAAAA
* *
105072074 -AATAGAAATTTTAAAAA
1 TTATA-AATTTTTAAAAA
105072091 TTATATAATTTTTAAA
1 TTATA-AATTTTTAAA
105072107 TTTTTTTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TTATAAATTTTTAAAAA
Found at i:105072536 original size:22 final size:22
Alignment explanation
Indices: 105072496--105072540 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
105072486 ACCCCAATAT
105072496 TTTAAATAATTTAAATTTTTTA
1 TTTAAATAATTTAAATTTTTTA
*
105072518 TTTAAA-AATTTAATTTTTTTA
1 TTTAAATAATTTAAATTTTTTA
105072539 TT
1 TT
105072541 CAAACTCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTAAATAATTTAAATTTTTTA
Found at i:105073004 original size:28 final size:27
Alignment explanation
Indices: 105072952--105073004 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
105072942 TTTTTTAATA
**
105072952 ATTTTATTATAAATTTTAATTTTATCT
1 ATTTTATTATAAATTTTAAAATTATCT
105072979 ATTTT-TTATACAATATTTAAAATTAT
1 ATTTTATTATA-AAT-TTTAAAATTAT
105073005 TCATAACCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 5 0.23
27 8 0.36
28 9 0.41
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (27 bp):
ATTTTATTATAAATTTTAAAATTATCT
Found at i:105079583 original size:42 final size:42
Alignment explanation
Indices: 105079532--105079614 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
105079522 CAAGGACAAG
*
105079532 TTTTATATGCATAATCAAAACCATTATTATTCAAATGACCTA
1 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCTA
105079574 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCT
1 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCT
105079615 TTATACATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (42 bp):
TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCTA
Found at i:105083080 original size:22 final size:22
Alignment explanation
Indices: 105083055--105083102 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
105083045 AACGCTTTAA
105083055 AGTAGGCACCAAAGTGCAAATC
1 AGTAGGCACCAAAGTGCAAATC
* *
105083077 AGTAGGCACCATAGTGTAAATC
1 AGTAGGCACCAAAGTGCAAATC
105083099 AGTA
1 AGTA
105083103 TATATATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (22 bp):
AGTAGGCACCAAAGTGCAAATC
Found at i:105088732 original size:6 final size:6
Alignment explanation
Indices: 105088713--105088772 Score: 66
Period size: 6 Copynumber: 9.7 Consensus size: 6
105088703 TTATTTTATC
** * *
105088713 AAAATA AATTTA AAAATAA AAAACAA AAAATA AATATA AAAATA AAAATA
1 AAAATA AAAATA AAAAT-A AAAA-TA AAAATA AAAATA AAAATA AAAATA
105088763 AAAATA AAAA
1 AAAATA AAAA
105088773 ACAAACCTGA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
6 34 0.77
7 10 0.23
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:105088747 original size:18 final size:19
Alignment explanation
Indices: 105088723--105088777 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
105088713 AAAATAAATT
105088723 TAAAAATAAAAAACAAAAA
1 TAAAAATAAAAAACAAAAA
* *
105088742 -ATAAATATAAAAATAAAAA
1 TAAAAATA-AAAAACAAAAA
105088761 TAAAAATAAAAAACAAA
1 TAAAAATAAAAAACAAA
105088778 CCTGAACCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 6 0.20
19 18 0.60
20 6 0.20
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.15
Consensus pattern (19 bp):
TAAAAATAAAAAACAAAAA
Found at i:105089051 original size:19 final size:19
Alignment explanation
Indices: 105089027--105089117 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
105089017 ATAATCTTCA
105089027 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
105089046 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
105089065 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105089082 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
105089100 ATGATATGTAATTTTAGA
1 ATGATATGCAATCTTAGA
105089118 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.25
19 34 0.52
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:105089102 original size:35 final size:36
Alignment explanation
Indices: 105089035--105089105 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
105089025 CAATGATATG
105089035 CAATCTTAGATATGATATGCAATCTTAAATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAATATGATA
*
105089071 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAATATGATA
105089106 TGTAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAAATATGATA
Found at i:105089123 original size:22 final size:23
Alignment explanation
Indices: 105089096--105089140 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
105089086 TTGCAATCTT
*
105089096 AGATATGA-TATGTAATTTTAGA
1 AGATATGATTATGTAATCTTAGA
*
105089118 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
105089141 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:105089427 original size:18 final size:17
Alignment explanation
Indices: 105089404--105089437 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
105089394 TTTCCCTGAT
*
105089404 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
105089422 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
105089438 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:105097738 original size:40 final size:40
Alignment explanation
Indices: 105097611--105097740 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
105097601 ATGCTGGAAA
* * * *
105097611 TTATGTCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
105097651 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
105097691 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
105097731 TTATATCCGG
1 TTATATCCGG
105097741 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:105101972 original size:78 final size:78
Alignment explanation
Indices: 105101862--105102156 Score: 425
Period size: 78 Copynumber: 3.8 Consensus size: 78
105101852 CGAAGAAATA
** *
105101862 GATTTGGCATCTCCATATTCGAC-GGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACAGG-GAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGA
105101926 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
105101940 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATATGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
*
105102005 ACAGATCCAAGAT
66 GCAGATCCAAGAT
* * ** *
105102018 GATTTGACATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
105102082 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
105102096 GATTTGGCATCTCTGTATTAGACAGGGAGTAGATCGAAA-ACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATC-AAAGACATAGCAGATCTGACCTTCAT
105102157 GTGTTTATAT
Statistics
Matches: 194, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
77 1 0.01
78 188 0.97
79 5 0.03
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:105102249 original size:45 final size:46
Alignment explanation
Indices: 105102179--105102370 Score: 232
Period size: 45 Copynumber: 4.3 Consensus size: 46
105102169 AAGCAGATCC
* *
105102179 AAGATGACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG
* *
105102225 -AGATAACAGATTTGGCATCTCTGTATTAGACGGGGGAGCAGAT-TG
1 AAGATAACAGATTTGGCATCTCTGTATTAGAC-GGGGAGCAAATCAG
* ** *
105102270 AAGA-AGCAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATC-G
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG
* * *
105102314 AAGATAACAGATTTGACGTCTCTGTATTAGACGGGAAGCAAATCA-
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG
*
105102359 AAGATAGCAGAT
1 AAGATAACAGAT
105102371 ATCGCCTTCC
Statistics
Matches: 128, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
44 16 0.12
45 99 0.77
46 13 0.10
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.24
Consensus pattern (46 bp):
AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG
Done.