Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 336 of 438
Found at i:105102368 original size:90 final size:91
Alignment explanation
Indices: 105102168--105102370 Score: 261
Period size: 90 Copynumber: 2.3 Consensus size: 91
105102158 TGTTTATATC
*
105102168 GAAGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAGAGATAAC
1 GAAGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAGAGATAAC
*
105102232 AGATTTGGCATCTCTGTATTAGACGGG
65 AGATTTGACATCTCTGTATTAGACGGG
* ** ** * *
105102259 GGAGCAGATTGAAGA-AGCAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATC-GAAGATAAC
1 GAAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG-AGATAAC
*
105102322 AGATTTGACGTCTCTGTATTAGAC-GG
65 AGATTTGACATCTCTGTATTAGACGGG
*
105102348 GAAGCAAATCAAAGATAGCAGAT
1 GAAGCAGATCAAAGATAGCAGAT
105102371 ATCGCCTTCC
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
89 14 0.15
90 69 0.72
91 13 0.14
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (91 bp):
GAAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAGAGATAACA
GATTTGACATCTCTGTATTAGACGGG
Found at i:105102792 original size:35 final size:36
Alignment explanation
Indices: 105102729--105102799 Score: 135
Period size: 35 Copynumber: 2.0 Consensus size: 36
105102719 CAATGATATG
105102729 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
105102765 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
105102800 TGCAATATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 19 0.54
36 16 0.46
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:105102818 original size:17 final size:19
Alignment explanation
Indices: 105102721--105102811 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
105102711 ATAATCTTCA
105102721 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105102740 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105102759 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105102776 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
105102794 ATGATATGCAATATTAGA
1 ATGATATGCAATCTTAGA
105102812 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:105103124 original size:18 final size:17
Alignment explanation
Indices: 105103101--105103134 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
105103091 TTTCCCTGAT
*
105103101 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
105103119 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
105103135 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:105115963 original size:81 final size:81
Alignment explanation
Indices: 105115828--105115990 Score: 308
Period size: 81 Copynumber: 2.0 Consensus size: 81
105115818 ATTCCCATTA
*
105115828 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATCAGCAAATAACAAAACAGAGCAT
1 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
105115893 GTGATAAAATATCTAT
66 GTGATAAAATATCTAT
*
105115909 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAATAGAGCAT
1 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
105115974 GTGATAAAATATCTAT
66 GTGATAAAATATCTAT
105115990 C
1 C
105115991 TTATTAGTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.26
Consensus pattern (81 bp):
CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
GTGATAAAATATCTAT
Found at i:105118978 original size:47 final size:46
Alignment explanation
Indices: 105118827--105119002 Score: 160
Period size: 47 Copynumber: 3.7 Consensus size: 46
105118817 ACATTATGAG
105118827 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACTAGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-TTGAGA-T-GT
* * * * *
105118876 -GCTAGAGTAAGA-CGTGTCTGGGACAT-GCATCGGCTTCGATAATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTT-GA-GATG-T
** *
105118922 AGTTAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGAGATGT
* ** *
105118968 GAGCCAGTGTAAGACTATGTCCAGGACATAGCATC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
105119003 GACACCTTAC
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.03
46 12 0.12
47 55 0.53
48 25 0.24
49 8 0.08
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGAGATGT
Found at i:105118980 original size:94 final size:95
Alignment explanation
Indices: 105118777--105119003 Score: 264
Period size: 95 Copynumber: 2.4 Consensus size: 95
105118767 GGGTCACTTG
* * *
105118777 TGTGAGCTAGAGTAAGACATGTCTGGGACATGCGTTGGCCACATTATGAGAGCCAGTGTAAGACC
1 TGTGAGCTAGAGTAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACC
*
105118842 ATGTCTGGGACATGGCATCAGCATTGAGAC
66 ATGTCTGGGACATGGCATCAACATTGAGAC
* ** * **
105118872 TAGT--GCTAGAGTAAGACGTGTCTGGGACATGCATCGGCTTCGATAATGATAGTTAGTGTAAGA
1 T-GTGAGCTAGAGTAAGACATGTCTGGGACATGCATCGGCCAC-ATAATGAGAGCCAGTGTAAGA
105118935 CCATGTCTGGGACATGGCATCAAC-TTGAGA-
64 CCATGTCTGGGACATGGCATCAACATTGAGAC
* * **
105118965 TGTGAGCCAGTGTAAGACTATGTCCAGGACATAGCATCG
1 TGTGAGCTAGAGTAAGAC-ATGTCTGGGACAT-GCATCG
105119004 ACACCTTACC
Statistics
Matches: 111, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
92 2 0.02
93 1 0.01
94 49 0.44
95 51 0.46
96 8 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (95 bp):
TGTGAGCTAGAGTAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACC
ATGTCTGGGACATGGCATCAACATTGAGAC
Found at i:105120615 original size:42 final size:42
Alignment explanation
Indices: 105120524--105120673 Score: 185
Period size: 42 Copynumber: 3.5 Consensus size: 42
105120514 GTCCTAGGTG
* * * * *
105120524 TGGTCTTACATGTAATCACATATCGGTACC-ACTGTCCCAGATA
1 TGGTCTTACACGAAATCACATAT-GATGCCGA-TGTCCCAGACA
* * *
105120567 GGGTCTTACACGAAATCACATATGATGCCGATGTCCTAGGCA
1 TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
*
105120609 TGGTCTTACACGAAGTCACATATGATGCCGATGTCCCAGACA
1 TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
*
105120651 TGGTCTTACACGAAACCACATAT
1 TGGTCTTACACGAAATCACATAT
105120674 AAGAATCCTA
Statistics
Matches: 92, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
42 71 0.77
43 21 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
Found at i:105125372 original size:23 final size:23
Alignment explanation
Indices: 105125344--105125403 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
105125334 TGTCCCAAGG
105125344 CACACGGGCGTGTGCATTGTCTC
1 CACACGGGCGTGTGCATTGTCTC
*
105125367 TACACGGGCGTGTGCATTGTCTC
1 CACACGGGCGTGTGCATTGTCTC
105125390 CACACGGGCGTGTG
1 CACACGGGCGTGTG
105125404 AGGCTTAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.13, C:0.28, G:0.33, T:0.25
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGTCTC
Found at i:105132034 original size:24 final size:24
Alignment explanation
Indices: 105131997--105132051 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
105131987 CATCTAAGAC
105131997 AAACT-ACATGGTGTATTGTTATG
1 AAACTAACATGGTGTATTGTTATG
*
105132020 AAACTAACTTGGTGTATTGTTATG
1 AAACTAACATGGTGTATTGTTATG
*
105132044 GAACTAAC
1 AAACTAAC
105132052 CTGTCGATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (24 bp):
AAACTAACATGGTGTATTGTTATG
Found at i:105134402 original size:26 final size:26
Alignment explanation
Indices: 105134365--105134448 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
105134355 TGATACAAAT
* *
105134365 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
105134391 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
105134417 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
105134443 TGATAA
1 TGATAA
105134449 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:105135932 original size:27 final size:26
Alignment explanation
Indices: 105135891--105135965 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
105135881 AAAAGTAGCT
* * *
105135891 AAATTACTATAATACCCCTATGTATGA
1 AAATTACTGTTATACCCCTAGGTAT-A
*
105135918 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGGTATA
*
105135944 AAATTACCGTTATACCCCTAGG
1 AAATTACTGTTATACCCCTAGG
105135966 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 22 0.51
27 21 0.49
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTATA
Found at i:105136153 original size:54 final size:55
Alignment explanation
Indices: 105136068--105136205 Score: 190
Period size: 54 Copynumber: 2.5 Consensus size: 55
105136058 GAGGAAGCGT
* * * *
105136068 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCAGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCAGCCACAAATATCTGTA
* *
105136122 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTGCCACAATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCAGCCACAAATATCTGTA
* *
105136177 TCTGGTGACTCTGTCACAT-TATCTGTTCT
1 TCTGGTGGCTCTGCCACATATATCTGTTCT
105136206 AGCAGCCATG
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
54 57 0.76
55 18 0.24
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCAGCCACAAATATCTGTA
Found at i:105136197 original size:27 final size:28
Alignment explanation
Indices: 105136068--105136202 Score: 163
Period size: 27 Copynumber: 5.0 Consensus size: 28
105136058 GAGGAAGCGT
* *
105136068 TCTGGTGGCTATGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
* *
105136095 TCTGGTGGCTCAGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
105136122 TCTGGTGGCTCTGCCAC-ATATATCTGT-
1 TCTGGTGGCTCTGCCACAAT-TATCTGTA
*
105136149 TCTGGTGGCCCTGCCACAATTATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCTGTA
* *
105136177 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAATTATCTGT
105136203 TCTAGCAGCC
Statistics
Matches: 96, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.01
27 79 0.82
28 16 0.17
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAATTATCTGTA
Found at i:105146582 original size:2 final size:2
Alignment explanation
Indices: 105146575--105146604 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
105146565 ATGATTACAA
105146575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105146605 TTGTGGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105148671 original size:13 final size:15
Alignment explanation
Indices: 105148642--105148673 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
105148632 GAGAAAGGTT
105148642 GATTCAGAGGCAAGA
1 GATTCAGAGGCAAGA
105148657 GATTC-GAGG-AAGA
1 GATTCAGAGGCAAGA
105148670 GATT
1 GATT
105148674 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (15 bp):
GATTCAGAGGCAAGA
Found at i:105151375 original size:26 final size:25
Alignment explanation
Indices: 105151346--105151487 Score: 82
Period size: 26 Copynumber: 5.6 Consensus size: 25
105151336 ACGTGAAAAA
*
105151346 TTAAGATAGATAATATATAG-AATAGT
1 TTAA-ATAAATAATATATAGAAATA-T
*
105151372 TTAAAATAAATAATGTATAGAAATAT
1 TT-AAATAAATAATATATAGAAATAT
*
105151398 TTGAAATAAATAATATACA-AAGCA-AT
1 TT-AAATAAATAATATATAGAA--ATAT
* *
105151424 CTAAAATAAATAATATATAAGACA-AT
1 -TTAAATAAATAATATAT-AGAAATAT
* *
105151450 TT--A-AAATAATATATAAAAATGT
1 TTAAATAAATAATATATAGAAATAT
*
105151472 TTAAAATGAATAATAT
1 TT-AAATAAATAATAT
105151488 GTAAAAAGAA
Statistics
Matches: 91, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
21 3 0.03
22 14 0.15
23 1 0.01
25 4 0.04
26 59 0.65
27 9 0.10
28 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (25 bp):
TTAAATAAATAATATATAGAAATAT
Found at i:105151411 original size:52 final size:50
Alignment explanation
Indices: 105151194--105151608 Score: 215
Period size: 52 Copynumber: 8.1 Consensus size: 50
105151184 ATGAAACAGC
* * * * * *
105151194 TTAAAGTAAATAATATAAAAAAATAGTTTCAAATAAATAATATATAAAAAAA
1 TTAAAATAAATAATAT-ATAAAACAGTTTAAAATAAATAAT-TATAGAAAAT
* * *
105151246 TTAAAATAAATAACA-ATAAAGCAGCTTAAAATAAATAA-TATA-AAAATT
1 TTAAAATAAATAATATATAAAACAGTTTAAAATAAATAATTATAGAAAA-T
* * * * *
105151294 TTGAAAA-AAATAAGATATAAAACAATTTAAATTGAAT-ATTATACGTGAAAAA
1 TT-AAAATAAATAATATATAAAACAGTTTAAAATAAATAATTATA---GAAAAT
* * * *
105151346 TTAAGATAGATAATATATAGAATAGTTTAAAATAAATAATGTATAGAAATAT
1 TTAAAATAAATAATATATAAAACAGTTTAAAATAAATAAT-TATAGAAA-AT
* * * * * *
105151398 TTGAAATAAATAATATACAAAGCAATCTAAAATAAATAATATATAAGACAAT
1 TTAAAATAAATAATATATAAAACAGTTTAAAATAAATAAT-TAT-AGAAAAT
* * * *
105151450 TTAAAAT-AAT-ATATA-AAAA-TGTTTAAAATGAATAATATGTAAAAAGAAAT
1 TTAAAATAAATAATATATAAAACAGTTTAAAATAAAT-A-AT-TATAGA-AAAT
* * * * * *
105151500 TTAAAATAAAGAATGTACAAAACAATTTAAAA-AAAT-ATATAAAAAAAGGAT
1 TTAAAATAAATAATATATAAAACAGTTTAAAATAAATAAT-TATAGAAA--AT
* * * * *
105151551 TCT-ATATAAGTAATATATATAACAGTTTAAAATAAATTATATATAAAAAAT
1 T-TAAAATAAATAATATATAAAACAGTTTAAAATAAATAAT-TATAGAAAAT
105151602 TTAAAAT
1 TTAAAAT
105151609 GGATAATAGT
Statistics
Matches: 277, Mismatches: 60, Indels: 53
0.71 0.15 0.14
Matches are distributed among these distances:
47 4 0.01
48 24 0.09
49 32 0.12
50 46 0.17
51 43 0.16
52 90 0.32
53 27 0.10
54 11 0.04
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (50 bp):
TTAAAATAAATAATATATAAAACAGTTTAAAATAAATAATTATAGAAAAT
Found at i:105151526 original size:76 final size:74
Alignment explanation
Indices: 105151379--105151544 Score: 197
Period size: 76 Copynumber: 2.2 Consensus size: 74
105151369 AGTTTAAAAT
* * * * * * *
105151379 AAATAATGTATAGAAATATTTGAAATAAATAATATACAAAGCAATCTAAAATAAATAATATATAA
1 AAATAATATATAAAAATATTTAAAATAAATAATATAAAAAGAAATCTAAAATAAAGAATATACAA
*
105151444 GACAATTTA
66 AACAATTTA
* * * *
105151453 AAATAATATATAAAAATGTTTAAAATGAATAATATGTAAAAAGAAATTTAAAATAAAGAATGTAC
1 AAATAATATATAAAAATATTTAAAATAAATAATA--TAAAAAGAAATCTAAAATAAAGAATATAC
105151518 AAAACAATTTA
64 AAAACAATTTA
*
105151529 AAAAAATATATAAAAA
1 AAATAATATATAAAAA
105151545 AAGGATTCTA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
74 29 0.38
76 48 0.62
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (74 bp):
AAATAATATATAAAAATATTTAAAATAAATAATATAAAAAGAAATCTAAAATAAAGAATATACAA
AACAATTTA
Found at i:105154332 original size:23 final size:23
Alignment explanation
Indices: 105154292--105154379 Score: 78
Period size: 23 Copynumber: 3.9 Consensus size: 23
105154282 AGCTTATTGT
*
105154292 TTTCAGCTC-ATTGCAGCTTACCA
1 TTTCAGCTCGATAG-AGCTTACCA
* *
105154315 TTTTAGCTCG-TATGAGC-TACTA
1 TTTCAGCTCGATA-GAGCTTACCA
*
105154337 -TTCAGGTCGATAGAGCTTACCA
1 TTTCAGCTCGATAGAGCTTACCA
105154359 TTTCAGCTC-ATTAGAGCTTAC
1 TTTCAGCTCGA-TAGAGCTTAC
105154380 TGTTCATCAG
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
21 11 0.21
22 11 0.21
23 29 0.56
24 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (23 bp):
TTTCAGCTCGATAGAGCTTACCA
Found at i:105156413 original size:44 final size:42
Alignment explanation
Indices: 105156301--105156422 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 42
105156291 GCGAGTTGGA
105156301 ATAGCTTCGGCTATATGTG-GCACTAAGTGTGCGATACTGAG
1 ATAGCTTCGGCTATATGTGTGCACTAAGTGTGCGATACTGAG
* **
105156342 ATAGCTTCGG-TTTAATGTGATGACACTAAGTGTGCGATA-TCGTT
1 ATAGCTTCGGCTAT-ATGTG-TG-CACTAAGTGTGCGATACT-GAG
*
105156386 ATAGCTTCGGCTAATCATTTGTGCACTAAGTGTGCGA
1 ATAGCTTCGGCT-AT-ATGTGTGCACTAAGTGTGCGA
105156423 GTTCTTAGAG
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
40 2 0.03
41 15 0.22
43 2 0.03
44 41 0.60
45 3 0.04
46 5 0.07
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
ATAGCTTCGGCTATATGTGTGCACTAAGTGTGCGATACTGAG
Found at i:105163295 original size:26 final size:26
Alignment explanation
Indices: 105163262--105163313 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
105163252 AGCTATAGAT
105163262 GTGTACCATGTTCTGTATACGTGATA
1 GTGTACCATGTTCTGTATACGTGATA
105163288 GTGTACCATGTTCTGTATACGTGATA
1 GTGTACCATGTTCTGTATACGTGATA
105163314 AGTCGTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (26 bp):
GTGTACCATGTTCTGTATACGTGATA
Found at i:105172587 original size:14 final size:14
Alignment explanation
Indices: 105172565--105172598 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
105172555 CTTTCTCTTC
*
105172565 TCTTCCTTTATTTT
1 TCTTTCTTTATTTT
*
105172579 TCTTTCTTTCTTTT
1 TCTTTCTTTATTTT
105172593 TCTTTC
1 TCTTTC
105172599 CCTTTCTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (14 bp):
TCTTTCTTTATTTT
Found at i:105177327 original size:21 final size:21
Alignment explanation
Indices: 105177287--105177327 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
105177277 ACTATGCTCA
* * *
105177287 GAGGTTTGACAGTCTTGATGT
1 GAGGTTCGACAGTATCGATGT
105177308 GAGGTTCGACAGTATCGATG
1 GAGGTTCGACAGTATCGATG
105177328 AGACTTAGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.12, G:0.34, T:0.32
Consensus pattern (21 bp):
GAGGTTCGACAGTATCGATGT
Found at i:105182461 original size:7 final size:7
Alignment explanation
Indices: 105182449--105182475 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
105182439 TAAGGCTTTC
105182449 TTTTTTA
1 TTTTTTA
105182456 TTTTTTA
1 TTTTTTA
105182463 TTTTTTA
1 TTTTTTA
105182470 TTTTTT
1 TTTTTT
105182476 TTTGTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:105187319 original size:36 final size:36
Alignment explanation
Indices: 105187272--105187345 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
105187262 TCATTTTGAG
105187272 TAAGTATGTGGTACATCGAGTCTCTGGTGCCGATCC
1 TAAGTATGTGGTACATCGAGTCTCTGGTGCCGATCC
105187308 TAAGTATGTGGTACATCGAGTCTCTGGTGCCGATCC
1 TAAGTATGTGGTACATCGAGTCTCTGGTGCCGATCC
105187344 TA
1 TA
105187346 TAAGCATCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (36 bp):
TAAGTATGTGGTACATCGAGTCTCTGGTGCCGATCC
Found at i:105188963 original size:68 final size:70
Alignment explanation
Indices: 105188891--105189088 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
105188881 ACACCCTGTA
* * * *
105188891 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
105188953 ATAAAT
65 ATAAAT
*
105188959 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
105189024 ATAAAT
65 ATAAAT
*
105189030 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
105189089 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:105189002 original size:41 final size:41
Alignment explanation
Indices: 105188957--105189074 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
105188947 TGAAAGATAA
105188957 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
105188998 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105189028 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105189069 ATGTAG
1 ATGTAG
105189075 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:105189014 original size:71 final size:71
Alignment explanation
Indices: 105188925--105189088 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
105188915 GAGATGTATC
105188925 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105188990 AGGACA
66 AGGACA
105188996 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105189061 AGGACA
66 AGGACA
105189067 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
105189089 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:105195801 original size:68 final size:70
Alignment explanation
Indices: 105195729--105195926 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
105195719 ACACCCTGTA
* * * *
105195729 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
105195791 ATAAAT
65 ATAAAT
*
105195797 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
105195862 ATAAAT
65 ATAAAT
*
105195868 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
105195927 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:105195840 original size:41 final size:41
Alignment explanation
Indices: 105195795--105195912 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
105195785 TGAAAGATAA
105195795 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
105195836 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105195866 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105195907 ATGTAG
1 ATGTAG
105195913 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:105195852 original size:71 final size:71
Alignment explanation
Indices: 105195763--105195926 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
105195753 GAGATGTATC
105195763 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105195828 AGGACA
66 AGGACA
105195834 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105195899 AGGACA
66 AGGACA
105195905 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
105195927 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:105203951 original size:40 final size:40
Alignment explanation
Indices: 105203906--105204073 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
105203896 CGGAATATAA
105203906 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
105203946 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
105203986 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
105204026 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
105204066 CCGGATAT
1 CCGGATAT
105204074 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:105204056 original size:80 final size:80
Alignment explanation
Indices: 105203922--105204071 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
105203912 ATAACCACGT
* *
105203922 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
105203987 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
105204002 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
105204065 CCCGGAT
64 CCCGGAT
105204072 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:105210918 original size:71 final size:71
Alignment explanation
Indices: 105210830--105210993 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
105210820 GAGATGTATC
*
105210830 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCGTGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105210895 AGGACA
66 AGGACA
*
105210901 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGTTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105210966 AGGACA
66 AGGACA
*
105210972 CCACGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
105210994 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:105212696 original size:20 final size:21
Alignment explanation
Indices: 105212673--105212711 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
105212663 TTTCTCAAAC
105212673 TTTCGACGTTT-TTCTTTTCT
1 TTTCGACGTTTGTTCTTTTCT
* *
105212693 TTTCGGCTTTTGTTCTTTT
1 TTTCGACGTTTGTTCTTTT
105212712 TGGGTGTCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.03, C:0.18, G:0.13, T:0.67
Consensus pattern (21 bp):
TTTCGACGTTTGTTCTTTTCT
Found at i:105220867 original size:26 final size:26
Alignment explanation
Indices: 105220838--105220912 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
105220828 TGATACAAAT
105220838 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
105220864 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105220890 TGATAATGGGTTAGGTAAATGTT
1 TGATAATGGGTTAGGTAAATGTT
105220913 TGAGTTGCTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105221456 original size:26 final size:26
Alignment explanation
Indices: 105221427--105221479 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
105221417 TTTACAGTTT
105221427 TACCCCTAGTAGATAAATT-ACCTAAA
1 TACCCCTAG-AGATAAATTGACCTAAA
* *
105221453 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCTAAA
105221479 T
1 T
105221480 GCATGTTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCTAAA
Found at i:105226922 original size:25 final size:26
Alignment explanation
Indices: 105226893--105226998 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
105226883 TGATACAAAT
105226893 TGATAATGG-TTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
105226918 TGATAATGGATTAGGTAAATATT-CA
1 TGATAATGGATTAGGTAAATGTTCCA
*
105226943 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
105226969 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
105226995 TGAT
1 TGAT
105226999 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
25 32 0.43
26 43 0.57
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:105226959 original size:51 final size:51
Alignment explanation
Indices: 105226893--105226998 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 51
105226883 TGATACAAAT
105226893 TGATAATGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT-CA
1 TGATAATGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
105226943 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
105226995 TGAT
1 TGAT
105226999 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
50 7 0.13
51 39 0.75
52 6 0.12
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:105232260 original size:21 final size:21
Alignment explanation
Indices: 105232236--105232276 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105232226 AAATTTAACA
*
105232236 TCAATTTAATCCATTTCATAC
1 TCAATTTAATCCAATTCATAC
*
105232257 TCAATTTAATTCAATTCATA
1 TCAATTTAATCCAATTCATA
105232277 TCCTAGGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.44
Consensus pattern (21 bp):
TCAATTTAATCCAATTCATAC
Found at i:105239259 original size:39 final size:39
Alignment explanation
Indices: 105239205--105239308 Score: 106
Period size: 41 Copynumber: 2.6 Consensus size: 39
105239195 CATACCAATG
*
105239205 CCATATCCTAGATATGGTCATACATG-TCTCATATCGA-CA
1 CCATATCC-AGATATGGTCATACAGGATCTCATA-CGATCA
* *
105239244 CCATATGCCAGATATGGTCTTACAGGAAATCTCATACGATGA
1 CCATAT-CCAGATATGGTCATACAGG--ATCTCATACGATCA
105239286 -CATATCCCAGATATGGTCATACA
1 CCATAT-CCAGATATGGTCATACA
105239309 CGTAGTCTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
39 21 0.38
40 2 0.04
41 24 0.44
42 8 0.15
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (39 bp):
CCATATCCAGATATGGTCATACAGGATCTCATACGATCA
Found at i:105247330 original size:205 final size:205
Alignment explanation
Indices: 105247041--105247544 Score: 695
Period size: 205 Copynumber: 2.5 Consensus size: 205
105247031 TGGGGAGCAG
* * ** * * * * * *
105247041 ATCGAAGATATAGCTGATTTGGATTTCACGTATTTATGATGAAGCAAATCCAAGATGATTTGTCG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
* * * * * * *
105247106 TCTCTATAGTGTTAGAGAACAAATCGAAGTCTGGCATCTCTACTTCAATAGAGAGCAGATACTTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCAGCTCCACTTCAATAGAGAGCAGACACATA
* * * * *
105247171 GCAGATCTC-ACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTT
131 GCAGATC-CAACCTTCAGATGTTTATACTAAAGCAGATCCAAGAAGGTTTAGCATCCTTGTGCTT
105247235 ATAAGGAACAA
195 ATAAGGAACAA
* *
105247246 ATCGAAGACATAGCTAATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
* * * * *
105247311 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCAGCTCCACTTCGATGGAGGGTAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCAGCTCCACTTCAATAGAGAGCAGACACATA
*
105247376 GCAGATCCAACCTTTAGATGTTTATACTAAAGCAGATCCAAGAAGGTTTAGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAGATGTTTATACTAAAGCAGATCCAAGAAGGTTTAGCATCCTTGTGCTTA
*
105247441 TAAGGAGCAA
196 TAAGGAACAA
*
105247451 ATCGAAGACGTAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
*
105247516 TCTCTGTATTGTCAGGGAACAAATCGAAG
66 TCTCTGTATTGTCAGAGAACAAATCGAAG
105247545 AAGCAGATTT
Statistics
Matches: 263, Mismatches: 35, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
204 1 0.00
205 262 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCAGCTCCACTTCAATAGAGAGCAGACACATA
GCAGATCCAACCTTCAGATGTTTATACTAAAGCAGATCCAAGAAGGTTTAGCATCCTTGTGCTTA
TAAGGAACAA
Found at i:105247702 original size:45 final size:44
Alignment explanation
Indices: 105247618--105247707 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
105247608 GAGTTTGCAA
*
105247618 GGAGTAGATTGAAGAAGAAAATTTGGCATCTCTGTATTAGACGG
1 GGAGTAGATTGAAGAAGAAAATTTGGCATCTCTGCATTAGACGG
* **
105247662 GGAGTAGATTGAAGATA-ACAGATTTGGTGTCTCTGCATTAGACGG
1 GGAGTAGATTGAAGA-AGA-AAATTTGGCATCTCTGCATTAGACGG
105247707 G
1 G
105247708 AAGCAGATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (44 bp):
GGAGTAGATTGAAGAAGAAAATTTGGCATCTCTGCATTAGACGG
Found at i:105249497 original size:9 final size:9
Alignment explanation
Indices: 105249464--105249514 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
105249454 AATGTGTATG
105249464 TATTATATA
1 TATTATATA
*
105249473 TATTTATACA
1 TA-TTATATA
*
105249483 TTTTATATA
1 TATTATATA
105249492 TATTATATA
1 TATTATATA
105249501 TA-TAT-T-
1 TATTATATA
105249507 TATTATAT
1 TATTATAT
105249515 TTTTATGTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
6 2 0.06
7 4 0.11
8 4 0.11
9 18 0.51
10 7 0.20
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTATATA
Found at i:105249504 original size:15 final size:15
Alignment explanation
Indices: 105249464--105249514 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
105249454 AATGTGTATG
*
105249464 TATTATATATATTTA
1 TATTATATATATATA
* *
105249479 TA-CAT-TTTATATA
1 TATTATATATATATA
*
105249492 TATTATATATATATT
1 TATTATATATATATA
105249507 TATTATAT
1 TATTATAT
105249515 TTTTATGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
13 8 0.29
14 4 0.14
15 16 0.57
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTATATATATATA
Found at i:105249545 original size:25 final size:23
Alignment explanation
Indices: 105249467--105249610 Score: 95
Period size: 23 Copynumber: 6.3 Consensus size: 23
105249457 GTGTATGTAT
* *
105249467 TATATA-TATTTATACA-TTTTA
1 TATATATTATGTATATATTTTTA
*
105249488 TATATATTATATATATATTTATTA
1 TATATATTATGTATATATTT-TTA
*
105249512 TAT-TTTTATGTATATATTTTTAA
1 TATATATTATGTATATATTTTT-A
* *
105249535 TATCATATTAT-T-CATATGTTT-
1 TAT-ATATTATGTATATATTTTTA
* *
105249556 T-TATATTATGTAAATATTTTCAA
1 TATATATTATGTATATATTTT-TA
* *
105249579 TACTACATTATGTATATATTTTTG
1 TA-TATATTATGTATATATTTTTA
*
105249603 TCTATATT
1 TATATATT
105249611 GTATACATAC
Statistics
Matches: 95, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
19 7 0.07
20 2 0.02
21 13 0.14
22 10 0.11
23 33 0.35
24 8 0.08
25 22 0.23
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (23 bp):
TATATATTATGTATATATTTTTA
Found at i:105249601 original size:44 final size:44
Alignment explanation
Indices: 105249493--105249601 Score: 105
Period size: 44 Copynumber: 2.4 Consensus size: 44
105249483 TTTTATATAT
* * *
105249493 ATTATATATATATTTATTATATTTTTATGTATATATTTTTAATATCAT
1 ATTAT-TATATATTT-TTATA--TTTATGTAAATATTTTCAATATCAC
*
105249541 ATTATTCATATGTTTTTATA-TTATGTAAATATTTTCAATA-CTAC
1 ATTATT-ATATATTTTTATATTTATGTAAATATTTTCAATATC-AC
105249585 ATTATGTATATATTTTT
1 ATTAT-TATATATTTTT
105249602 GTCTATATTG
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
43 1 0.02
44 33 0.62
45 1 0.02
47 6 0.11
48 12 0.23
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.58
Consensus pattern (44 bp):
ATTATTATATATTTTTATATTTATGTAAATATTTTCAATATCAC
Found at i:105251500 original size:23 final size:23
Alignment explanation
Indices: 105251470--105251515 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
105251460 ATATCAGTAT
105251470 AAAATGAACAACATCACAGTTAA
1 AAAATGAACAACATCACAGTTAA
105251493 AAAATGAACAACATCACAGTTAA
1 AAAATGAACAACATCACAGTTAA
105251516 CATAATCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (23 bp):
AAAATGAACAACATCACAGTTAA
Found at i:105253517 original size:17 final size:17
Alignment explanation
Indices: 105253492--105253524 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
105253482 CCCCTCTCCC
105253492 TTTTCTCT-CCCTTTTT
1 TTTTCTCTCCCCTTTTT
105253508 TTTTCTTCTCCCCTTTT
1 TTTTC-TCTCCCCTTTT
105253525 CAAGTGAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 3 0.20
18 7 0.47
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTCTCTCCCCTTTTT
Found at i:105254418 original size:23 final size:21
Alignment explanation
Indices: 105254321--105254418 Score: 83
Period size: 22 Copynumber: 4.4 Consensus size: 21
105254311 TTTTCTTTTA
*
105254321 ATATTTTATATATTATTATGTAC
1 ATATTTT-TATA-TATTATGTAT
*
105254344 ATATTTTGATATCATTA-GTTAT
1 ATATTTTTATAT-ATTATG-TAT
105254366 ATATTTTTATATATTATGTAT
1 ATATTTTTATATATTATGTAT
*
105254387 ATTTCTTTTACTAT-TTCATGTAT
1 ATAT-TTTTA-TATATT-ATGTAT
105254410 ATATATTTT
1 ATAT-TTTT
105254419 TTTCATCTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
21 12 0.19
22 28 0.44
23 23 0.37
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
ATATTTTTATATATTATGTAT
Found at i:105254429 original size:24 final size:26
Alignment explanation
Indices: 105254384--105254488 Score: 71
Period size: 24 Copynumber: 4.1 Consensus size: 26
105254374 ATATATTATG
*
105254384 TATATTTCTTTTACTATTTCATGTATA
1 TATATTT-TTTTACTATCTCATGTATA
105254411 TATATTTTTTT-C-ATCTCATGTATA
1 TATATTTTTTTACTATCTCATGTATA
* *
105254435 -A-A-TTTTTGAATA-CT-ATGTTATA
1 TATATTTTTTTACTATCTCATG-TATA
* *
105254457 TATATATTTTTAATACCATCTTATGTATA
1 TATAT-TTTTT--TACTATCTCATGTATA
105254486 TAT
1 TAT
105254489 TATTATATCT
Statistics
Matches: 61, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
21 8 0.13
22 7 0.11
23 3 0.05
24 12 0.20
25 1 0.02
26 9 0.15
27 7 0.11
28 2 0.03
29 9 0.15
30 3 0.05
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55
Consensus pattern (26 bp):
TATATTTTTTTACTATCTCATGTATA
Found at i:105254472 original size:25 final size:26
Alignment explanation
Indices: 105254422--105254489 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 26
105254412 ATATTTTTTT
* * *
105254422 CATCTCATGTATAAATTTTTGAATAC
1 CATCTTATATATATATTTTTGAATAC
* *
105254448 TATGTTATATATATATTTTT-AATAC
1 CATCTTATATATATATTTTTGAATAC
*
105254473 CATCTTATGTATATATT
1 CATCTTATATATATATT
105254490 ATTATATCTA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.50
Consensus pattern (26 bp):
CATCTTATATATATATTTTTGAATAC
Found at i:105254699 original size:3 final size:3
Alignment explanation
Indices: 105254691--105254779 Score: 178
Period size: 3 Copynumber: 29.7 Consensus size: 3
105254681 TGCATCTTAG
105254691 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
105254739 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
105254780 GTATATGTTT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:105254807 original size:10 final size:10
Alignment explanation
Indices: 105254792--105254816 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
105254782 ATATGTTTCT
105254792 TATATATGTA
1 TATATATGTA
105254802 TATATATGTA
1 TATATATGTA
105254812 TATAT
1 TATAT
105254817 TTTTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:105255259 original size:2 final size:2
Alignment explanation
Indices: 105255252--105255278 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
105255242 TATTACTACT
105255252 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
105255279 TCTACGTACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105260556 original size:43 final size:44
Alignment explanation
Indices: 105260509--105260624 Score: 175
Period size: 43 Copynumber: 2.7 Consensus size: 44
105260499 AAAAAAAAGG
105260509 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAACA-
1 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAACAC
* *
105260552 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTTTTGATTAACAC
1 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAACAC
*
105260596 AAAAGAT-TAGGATGAAAACCC-AAAAGGGC
1 AAAAGATCAAGG-TGAAAACCCGAAAAGGGC
105260625 ATTCTAATGA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
43 52 0.76
44 16 0.24
ACGTcount: A:0.46, C:0.16, G:0.24, T:0.15
Consensus pattern (44 bp):
AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAACAC
Found at i:105261561 original size:14 final size:14
Alignment explanation
Indices: 105261542--105261577 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
105261532 CGTCGAGGTA
*
105261542 TTTTCAAATTCTGT
1 TTTTCAAATTCTAT
105261556 TTTTCAAATTCTAT
1 TTTTCAAATTCTAT
105261570 TTTTCAAA
1 TTTTCAAA
105261578 AATCAACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.28, C:0.14, G:0.03, T:0.56
Consensus pattern (14 bp):
TTTTCAAATTCTAT
Found at i:105261630 original size:89 final size:88
Alignment explanation
Indices: 105261465--105262242 Score: 538
Period size: 89 Copynumber: 8.9 Consensus size: 88
105261455 CGTTAAGGTA
* * * *
105261465 TTTTCAATTTTTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCT
1 TTTTCAA-ATTTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCA
105261530 CACG-TCGAGGTATTTTCAAATTCTGT
63 CACGCT-GAGGTATTTTCAAATTCTGT
* *
105261556 TTTTCAAATTCTATTTTTC-AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAAATT-TATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCAC
** *
105261620 ACGCCAAGGTATTTTC-AATTCCCGT
64 ACGCTGAGGTATTTTCAAATT-CTGT
* * * *
105261645 TTTTC------A------AAAAAATTAACTCATATTGTGAGAAGTGAGTTGAGCCTCAGGTCTCA
1 TTTTCAAATTTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACA
*
105261698 CGCTGAGGTATTTTCAATTTCTGT
65 CGCTGAGGTATTTTCAAATTCTGT
* * * *
105261722 TTTTCAATTTCTATTTGTC-AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGG--GC
1 TTTTCAAATT-TATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCAC
* *
105261784 ACGCTGAGGTATTTTCAATTTCCG-
64 ACGCTGAGGTATTTTCAAATTCTGT
* * *
105261808 TTTTCCAACTTATGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
1 TTTTCAAATTTAT--TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTC
*
105261871 ACACGCTGAAGTATTTTC-AATTCTTGATTT
62 ACACGCTGAGGTATTTTCAAATTC-TG---T
* *
105261901 TTTTCAATTTATATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TTTTCAAATT-TATTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGT
*
105261966 CGCACGCTGAGGTATTGTT---A----G-
61 CACACGCTGAGGTATT-TTCAAATTCTGT
* ** *
105261987 -TTT---ATAT-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGG--ACA
1 TTTTCAAATTTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACA
* *
105262045 CACTGAGGTATTTTCAATTTCTGCT
65 CGCTGAGGTATTTTCAAATTCTG-T
* * *
105262070 TTTT-AATTTTTGTTTTTCAAGAAAATCAA-TCCATATTGCGAGAGGTGAGTTGAGCCTTGGTTC
1 TTTTCAA-ATTTATTTTTCAA-AAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTAGG-TC
** * * *
105262133 ACGTGCTGAGGTATTTTTAATTTCTAT
62 ACACGCTGAGGTATTTTCAAATTCTGT
** * * *
105262160 TCTTTCAAA-TTAAGTTTCAAAAAAACCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGCTCA
1 T-TTTCAAATTTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCA
** *
105262224 CGTGCTGAGCTATTTTCAA
63 CACGCTGAGGTATTTTCAA
105262243 TTGTTGTTAT
Statistics
Matches: 559, Mismatches: 70, Indels: 117
0.75 0.09 0.16
Matches are distributed among these distances:
74 2 0.00
75 13 0.02
77 98 0.18
78 5 0.01
80 4 0.01
81 2 0.00
82 2 0.00
84 4 0.01
85 6 0.01
86 7 0.01
87 30 0.05
88 19 0.03
89 186 0.33
90 66 0.12
91 41 0.07
92 7 0.01
93 7 0.01
94 44 0.08
95 1 0.00
96 13 0.02
97 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (88 bp):
TTTTCAAATTTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTCACAC
GCTGAGGTATTTTCAAATTCTGT
Found at i:105261681 original size:77 final size:77
Alignment explanation
Indices: 105261575--105261728 Score: 202
Period size: 77 Copynumber: 2.0 Consensus size: 77
105261565 TCTATTTTTC
* *
105261575 AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCCAAGGTATTTTCAAT
1 AAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCAGG-TCACACGCCAAGGTATTTTCAAT
105261639 TCCCGTTTTTCAA
65 TCCCGTTTTTCAA
* * * * **
105261652 AAAAATTAACTCATATTGTGAGAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATT
* *
105261717 TCTGTTTTTCAA
66 CCCGTTTTTCAA
105261729 TTTCTATTTG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
77 64 0.97
78 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (77 bp):
AAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATT
CCCGTTTTTCAA
Found at i:105261682 original size:166 final size:166
Alignment explanation
Indices: 105261408--105262154 Score: 696
Period size: 166 Copynumber: 4.4 Consensus size: 166
105261398 GATTTCTGTC
* * * * *
105261408 TTCAAAAATCAATTCATATTGCGGGAGGTGAGTTGAACCTTAAG--ACACGTTAAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGTCACACGCTAAGGTATTTTCA
*** * *
105261471 ATTTTTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCTCACG-T
65 ATTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
*
105261535 CGAGGTATTTTCAAATTCTG-TTTTTCAAATTCTATTT
130 -GAGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
* *
105261572 TTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACACGCTAAGGTATTTTCA
** * * * *
105261637 ATTCCCGTTTTTCAAAAAAATTAACTCATATTGTGAGAAGTGAGTTGAGCCTCAGGTCTCACGCT
65 ATTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
*
105261702 GAGGTATTTTCAATTTCTG-TTTTTCAATTTCTATTT
130 GAGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
* * * * *
105261738 GTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGG--GCACGCTGAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACACGCTAAGGTATTTTCA
*
105261801 ATTTCCGTTTTCCAACTTATGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCC
65 A--------TTCC--C--A--CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
105261866 TCAGG--ACACGCTGAAGTATTTTC-AATTCTTGATTTTTTTCAATTTATATTT
116 TCAGGTCACACGCTGAGGTATTTTCAAATTC-TG--TTTTTTCAATTTCTATTT
* * *
105261917 TTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATT
1 TTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACACGCTAAGGTATT
* *** * *
105261982 GTT-AGTTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGG--AC
61 -TTCAATTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* * * * *
105262044 ACACTGAGGTATTTTCAATTTCTGCTTTTT-AATTTTTGTTT
125 ACGCTGAGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
** *
105262085 TTCAAGAAAATCAA-TCCATATTGCGAGAGGTGAGTTGAGCCTTGGTTCACGTGCTGAGGTATTT
1 TTC-A-AAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACACGCTAAGGTATTT
*
105262149 TTAATT
62 TCAATT
105262155 TCTATTCTTT
Statistics
Matches: 492, Mismatches: 56, Indels: 68
0.80 0.09 0.11
Matches are distributed among these distances:
163 1 0.00
164 54 0.11
165 7 0.01
166 193 0.39
167 3 0.01
168 12 0.02
169 5 0.01
171 64 0.13
172 8 0.02
173 1 0.00
174 1 0.00
175 4 0.01
176 18 0.04
177 2 0.00
178 44 0.09
179 18 0.04
183 39 0.08
185 16 0.03
186 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (166 bp):
TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGCTAAGGTATTTTCAA
TTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTG
AGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
Found at i:105262019 original size:171 final size:166
Alignment explanation
Indices: 105261823--105262168 Score: 462
Period size: 171 Copynumber: 2.0 Consensus size: 166
105261813 CAACTTATGC
* * *
105261823 TTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAAGTATTTT
*
105261888 CAA-TTCTTGATTTTTTTCAATTTATATTTTTCAAAAAAAAATCAA-CTCATATTGCGAGAGGTG
66 CAATTTC-TG--CTTTTT-AATTTATATTTTTC--AAAAAAATCAATC-CATATTGCGAGAGGTG
* *
105261951 AGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTTATAT
124 AGTTGAGCCTCGGGTCACACGCTGAGGTATTGTTAATTTATAT
*
105261994 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAGGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAAGTATTTT
* * *
105262059 CAATTTCTGCTTTTTAATTTTTGTTTTTCAAGAAAATCAATCCATATTGCGAGAGGTGAGTTGAG
66 CAATTTCTGCTTTTTAATTTATATTTTTCAAAAAAATCAATCCATATTGCGAGAGGTGAGTTGAG
* * ** * *
105262124 CCTTGGTTCACGTGCTGAGGTATTTTTAATTTCTAT
131 CCTCGGGTCACACGCTGAGGTATTGTTAATTTATAT
105262160 TCTTTCAAA
1 T-TTTCAAA
105262169 TTAAGTTTCA
Statistics
Matches: 156, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
166 62 0.40
167 8 0.05
168 12 0.08
169 5 0.03
171 66 0.42
172 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (166 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAAGTATTTT
CAATTTCTGCTTTTTAATTTATATTTTTCAAAAAAATCAATCCATATTGCGAGAGGTGAGTTGAG
CCTCGGGTCACACGCTGAGGTATTGTTAATTTATAT
Found at i:105262038 original size:260 final size:255
Alignment explanation
Indices: 105261741--105262216 Score: 654
Period size: 260 Copynumber: 1.8 Consensus size: 255
105261731 TCTATTTGTC
* * * *
105261741 AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTC
*
105261806 CG-TTTTCCAACTTATGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 CGCTTTT-CAACTTATGCTTTTCAAAAAAATCAATCCATATTGCGAGAGGTGAGTTGAGCCT-AG
* * * *
105261870 G-ACAC-GCTGAAGTATTTTCAA-TTCTTGATTTTTTTCAATTTATATTTTTCAAAAAAAAATCA
129 GTACACGGCTGAAGTATTTTCAATTTC-T-A-TTCTTTCAAATTA-A-GTTTC--AAAAAAACCA
*
105261932 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTTATATTTT
187 ACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTTATATTTT
105261997 TCAA
252 TCAA
105262001 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTC
* * * * * * *
105262066 TGCTTTTTAATTTTTGTTTTTCAAGAAAATCAATCCATATTGCGAGAGGTGAGTTGAGCCTTGGT
66 CGCTTTTCAACTTATGCTTTTCAAAAAAATCAATCCATATTGCGAGAGGTGAGTTGAGCCTAGGT
* * *
105262131 TCACGTGCTGAGGTATTTTTAATTTCTATTCTTTCAAATTAAGTTTCAAAAAAACCAACTCATAT
131 ACACG-GCTGAAGTATTTTCAATTTCTATTCTTTCAAATTAAGTTTCAAAAAAACCAACTCATAT
105262196 TGCGAGAGGTAAGTTGAGCCT
195 TGCGAGAGGTAAGTTGAGCCT
105262217 TGGCTCACGT
Statistics
Matches: 191, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
256 37 0.19
258 4 0.02
259 3 0.02
260 124 0.65
261 5 0.03
262 15 0.08
263 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (255 bp):
AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTC
CGCTTTTCAACTTATGCTTTTCAAAAAAATCAATCCATATTGCGAGAGGTGAGTTGAGCCTAGGT
ACACGGCTGAAGTATTTTCAATTTCTATTCTTTCAAATTAAGTTTCAAAAAAACCAACTCATATT
GCGAGAGGTAAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTTATATTTTTCAA
Found at i:105262112 original size:349 final size:344
Alignment explanation
Indices: 105261478--105262216 Score: 899
Period size: 349 Copynumber: 2.1 Consensus size: 344
105261468 TCAATTTTTA
* * *
105261478 CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCTCACGTCGAGGTAT
1 CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGTCGAAGTAT
*
105261543 TTTCAAATTCTGTTTTTCAAATTCTATTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGA
65 TTTCAAATTCTGTTTTTCAAATTATATTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGA
* * * * *
105261608 GCCTTGGCTCACACGCCAAGGTATTTTCAATTCCCGTTTTTCAAAAAAATTAACTCATATTGTGA
130 GCCTCGGCTCACACGCCAAGGTATTTTCAATTCACATTTTTCAAAAAAATCAACTCATATTGCGA
* * *
105261673 GAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTATTT
195 GAAGTAAGTTGAGCCTCAGG-CACACACTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTATTT
*
105261738 GTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGG-GCAC-GCTGAGGTATTTTCA
259 GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTGCACGGCTGAGGTATTTTCA
* * *
105261801 ATTTCCGTT-TTCCAACTTATG
323 ATTTCCATTCTTCCAAATTAAG
*
105261822 CTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACG-CTGAAGTAT
1 CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGTC-GAAGTAT
* *
105261885 TTTC-AATTCTTGATTTTTTTCAATTTATATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGG
65 TTTCAAATTC-TG---TTTTTCAAATTATATTTTTC----AAAAATCAACTCATAATGCGAGAGG
* * ** * * *
105261949 TGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTT-AGTTTATATTTTTCAAAAAAATCAACTC
122 TGAGTTGAGCCTCGGCTCACACGCCAAGGTATT-TTCAATTCACATTTTTCAAAAAAATCAACTC
*
105262013 ATATTGCGAGAGGTAAGTTGAGCCTCAGG-ACACACTGAGGTATTTTCAATTTCTGCTTTTT-AA
186 ATATTGCGAGAAGTAAGTTGAGCCTCAGGCACACACTGAGGTATTTTCAATTTCTG-TTTTTCAA
* * * * *
105262076 TTTTTGTTTTTCAAGAAAATCAA-TCCATATTGCGAGAGGTGAGTTGAGCCTTGGTTCACGTGCT
250 TTTCTATTTGTC-A-AAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTAGGTGCACG-GCT
* * *
105262140 GAGGTATTTTTAATTTCTATTCTTTCAAATTAAG
311 GAGGTATTTTCAATTTCCATTCTTCCAAATTAAG
* *
105262174 --TTTCAAAAAAACCAACTCATATTGCGAGAGGTAAGTTGAGCCT
1 CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
105262217 TGGCTCACGT
Statistics
Matches: 339, Mismatches: 38, Indels: 30
0.83 0.09 0.07
Matches are distributed among these distances:
341 6 0.02
342 16 0.05
344 47 0.14
345 18 0.05
347 35 0.10
348 9 0.03
349 136 0.40
350 42 0.12
351 21 0.06
352 9 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (344 bp):
CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGTCGAAGTATT
TTCAAATTCTGTTTTTCAAATTATATTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAG
CCTCGGCTCACACGCCAAGGTATTTTCAATTCACATTTTTCAAAAAAATCAACTCATATTGCGAG
AAGTAAGTTGAGCCTCAGGCACACACTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTATTTGT
CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTGCACGGCTGAGGTATTTTCAATT
TCCATTCTTCCAAATTAAG
Found at i:105262203 original size:90 final size:89
Alignment explanation
Indices: 105261994--105262244 Score: 296
Period size: 90 Copynumber: 2.8 Consensus size: 89
105261984 TAGTTTATAT
* * *
105261994 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAC--ACTGAGGTATT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCT-TGGTCACGTGCTGAGGTATT
* * **
105262057 TTCAATTTCTGCTTTTTAATTTTTG
65 TTCAATTTCTGATTTTTAAATTAAG
* *
105262082 TTTTTCAAGAAAATCAA-TCCATATTGCGAGAGGTGAGTTGAGCCTTGGTTCACGTGCTGAGGTA
1 -TTTTCAAAAAAATCAACT-CATATTGCGAGAGGTAAGTTGAGCCTTGG-TCACGTGCTGAGGTA
*
105262146 TTTTTAATTTCT-ATTCTTTCAAATTAAG
63 TTTTCAATTTCTGATT-TTT-AAATTAAG
* *
105262174 -TTTCAAAAAAACCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGG-TCACGTGCTGAGGTATT
105262238 TTCAATT
65 TTCAATT
105262245 GTTGTTATTA
Statistics
Matches: 139, Mismatches: 16, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
88 3 0.02
89 43 0.31
90 65 0.47
91 23 0.17
92 5 0.04
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (89 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGTCACGTGCTGAGGTATTT
TCAATTTCTGATTTTTAAATTAAG
Found at i:105264106 original size:12 final size:12
Alignment explanation
Indices: 105264089--105264137 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
105264079 TCAGTCTTAA
*
105264089 TATTATTAATAC
1 TATTATTAATAT
**
105264101 TATTATTTCTAT
1 TATTATTAATAT
* *
105264113 TATTATTATTGT
1 TATTATTAATAT
105264125 TATTATTAATAT
1 TATTATTAATAT
105264137 T
1 T
105264138 CTGGTTATTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (12 bp):
TATTATTAATAT
Found at i:105264465 original size:22 final size:21
Alignment explanation
Indices: 105264426--105264490 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
105264416 TTTTCTTTTA
105264426 ATATTTTATATATTATTATGTAC
1 ATATTTT-TATA-TATTATGTAC
* *
105264449 ATATTTTGATATCATTA-GTTAT
1 ATATTTTTATAT-ATTATG-TAC
105264471 ATATTTTTATATATTATGTA
1 ATATTTTTATATATTATGTA
105264491 TATTTCTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
21 8 0.22
22 21 0.58
23 7 0.19
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (21 bp):
ATATTTTTATATATTATGTAC
Found at i:105264536 original size:26 final size:29
Alignment explanation
Indices: 105264489--105264541 Score: 76
Period size: 26 Copynumber: 1.9 Consensus size: 29
105264479 ATATATTATG
*
105264489 TATATTTCTTTTACTATTTCATGTATATA
1 TATATTTCTTTTACTATCTCATGTATATA
105264518 TATATTT-TTTT-C-ATCTCATGTATA
1 TATATTTCTTTTACTATCTCATGTATA
105264542 AATTTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 11 0.48
27 1 0.04
28 4 0.17
29 7 0.30
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (29 bp):
TATATTTCTTTTACTATCTCATGTATATA
Found at i:105264579 original size:25 final size:26
Alignment explanation
Indices: 105264529--105264596 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 26
105264519 ATATTTTTTT
* * *
105264529 CATCTCATGTATAAATTTTTGAATAC
1 CATCTTATATATATATTTTTGAATAC
* *
105264555 TATGTTATATATATATTTTT-AATAC
1 CATCTTATATATATATTTTTGAATAC
*
105264580 CATCTTATGTATATATT
1 CATCTTATATATATATT
105264597 ATTATATCTA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.50
Consensus pattern (26 bp):
CATCTTATATATATATTTTTGAATAC
Found at i:105264853 original size:3 final size:3
Alignment explanation
Indices: 105264794--105264837 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
105264784 CGTATGCATC
*
105264794 TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
105264838 CGTATATGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:105264866 original size:10 final size:10
Alignment explanation
Indices: 105264851--105264875 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
105264841 ATATGTTTAT
105264851 TATATATGTA
1 TATATATGTA
105264861 TATATATGTA
1 TATATATGTA
105264871 TATAT
1 TATAT
105264876 TTTTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:105265317 original size:2 final size:2
Alignment explanation
Indices: 105265310--105265348 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
105265300 TATTACTACT
105265310 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
105265349 TCTACGTACG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:105272138 original size:2 final size:2
Alignment explanation
Indices: 105272089--105272124 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
105272079 TTTTTTTAAA
105272089 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105272125 TGACTCTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105276170 original size:25 final size:25
Alignment explanation
Indices: 105276129--105276212 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
105276119 CTGGAGGCCT
105276129 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
105276153 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
105276178 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
105276204 AGCCCTTTT
1 AGCCCTTTT
105276213 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.09
24 5 0.09
25 33 0.62
26 10 0.19
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:105276295 original size:11 final size:11
Alignment explanation
Indices: 105276278--105276329 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
105276268 TGCATTTCAA
105276278 ACATATCATGT
1 ACATATCATGT
*
105276289 GCATATCA--T
1 ACATATCATGT
105276298 ACATATCATGT
1 ACATATCATGT
*
105276309 ACATATCATAT
1 ACATATCATGT
105276320 -CA-ATCATGT
1 ACATATCATGT
105276329 A
1 A
105276330 TATCATATCC
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
9 14 0.41
10 2 0.06
11 18 0.53
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (11 bp):
ACATATCATGT
Found at i:105276317 original size:20 final size:20
Alignment explanation
Indices: 105276262--105276329 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
105276252 TTATGAATAC
* * *
105276262 ATCATGTGCATTTCAAACAT
1 ATCATGTACATATCATACAT
*
105276282 ATCATGTGCATATCATACAT
1 ATCATGTACATATCATACAT
105276302 ATCATGTACATATCATATCA-
1 ATCATGTACATATCATA-CAT
105276322 ATCATGTA
1 ATCATGTA
105276330 TATCATATCC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (20 bp):
ATCATGTACATATCATACAT
Found at i:105284175 original size:25 final size:26
Alignment explanation
Indices: 105284134--105284243 Score: 156
Period size: 26 Copynumber: 4.3 Consensus size: 26
105284124 CTGGAGGCCT
105284134 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
105284158 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
105284183 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
105284209 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
105284235 AGCCCTTTT
1 AGCCCTTTT
105284244 GCACTTCCTC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
23 5 0.06
24 5 0.06
25 33 0.42
26 35 0.45
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:105284217 original size:51 final size:49
Alignment explanation
Indices: 105284134--105284243 Score: 150
Period size: 51 Copynumber: 2.2 Consensus size: 49
105284124 CTGGAGGCCT
** *
105284134 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCATA
105284183 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCAATAAACTAGGGCATA
105284235 AGCCCTTTT
1 AGCCCTTTT
105284244 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
48 5 0.09
49 7 0.13
50 10 0.19
51 22 0.41
52 10 0.19
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (49 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCATA
Found at i:105284322 original size:20 final size:20
Alignment explanation
Indices: 105284297--105284349 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
105284287 GAATACATCC
*
105284297 TGTGCATTTCATA-CATATCA
1 TGTGCATATCATATCA-ATCA
105284317 TGTGCATATCATATCAATCA
1 TGTGCATATCATATCAATCA
105284337 TGT--ATATCATATC
1 TGTGCATATCATATC
105284350 CAACGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 10 0.32
20 19 0.61
21 2 0.06
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (20 bp):
TGTGCATATCATATCAATCA
Found at i:105286583 original size:28 final size:28
Alignment explanation
Indices: 105286551--105286649 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
105286541 GCAATAAGCC
*
105286551 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
105286579 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
105286607 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
105286636 CGCACACTTAGTGC
1 CGCACACTTAGTGC
105286650 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:105294264 original size:28 final size:28
Alignment explanation
Indices: 105294232--105294330 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
105294222 GCAATAAGCC
*
105294232 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
105294260 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
105294288 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
105294317 CGCACACTTAGTGC
1 CGCACACTTAGTGC
105294331 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:105298284 original size:34 final size:34
Alignment explanation
Indices: 105298236--105298304 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
105298226 ATTAAGAGAG
105298236 ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
1 ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
*
105298270 ATAGTAGTGTTTGACGGAATAGTGGATGTAGTCA
1 ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
105298304 A
1 A
105298305 AGATCTCAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.07, G:0.32, T:0.30
Consensus pattern (34 bp):
ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
Found at i:105299855 original size:26 final size:27
Alignment explanation
Indices: 105299826--105299881 Score: 96
Period size: 26 Copynumber: 2.1 Consensus size: 27
105299816 TACCAGAGGT
*
105299826 AAAATTGTTAAAATTTTA-TCGGGGTA
1 AAAATTGTTAAAATTTTAGTAGGGGTA
105299852 AAAATTGTTAAAATTTTAGTAGGGGTA
1 AAAATTGTTAAAATTTTAGTAGGGGTA
105299879 AAA
1 AAA
105299882 TAGAGAAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.36
Consensus pattern (27 bp):
AAAATTGTTAAAATTTTAGTAGGGGTA
Found at i:105300276 original size:28 final size:30
Alignment explanation
Indices: 105300220--105300279 Score: 106
Period size: 28 Copynumber: 2.1 Consensus size: 30
105300210 GGAGAGATTG
105300220 TCACTCTACCGAAAACTAGAGAGAATTTAT
1 TCACTCTACCGAAAACTAGAGAGAATTTAT
105300250 TCACTCTACCG-AAA-TAGAGAGAATTTAT
1 TCACTCTACCGAAAACTAGAGAGAATTTAT
105300278 TC
1 TC
105300280 TCAACTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 16 0.53
29 3 0.10
30 11 0.37
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.28
Consensus pattern (30 bp):
TCACTCTACCGAAAACTAGAGAGAATTTAT
Found at i:105307479 original size:29 final size:29
Alignment explanation
Indices: 105307416--105307518 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 29
105307406 TAATCAGCCG
* ** *
105307416 CGCACACTTAGTCCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
*
105307445 CACACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
105307474 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
105307503 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
105307519 ATCTCTCAAC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 3 0.05
29 63 0.95
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:105308725 original size:22 final size:22
Alignment explanation
Indices: 105308700--105308745 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
105308690 TTTTTCATTT
105308700 TTACCTTCTTTTACTAACAATA
1 TTACCTTCTTTTACTAACAATA
105308722 TTACCTTCTTTTACTAACAATA
1 TTACCTTCTTTTACTAACAATA
105308744 TT
1 TT
105308746 TTATCTCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (22 bp):
TTACCTTCTTTTACTAACAATA
Found at i:105309633 original size:65 final size:65
Alignment explanation
Indices: 105309541--105309683 Score: 169
Period size: 65 Copynumber: 2.2 Consensus size: 65
105309531 GGACTACCGT
** * **
105309541 AGCTCTTTGTGAGTGCCCTGGTATATGATTGGTTGTGATCCGGCATATATTGCGGACACAAACAC
1 AGCTCTTTGTGAGTGCCCTGGTATATGATCAGTTGTGATACGGCATATATTGCAAACACAAACAC
* * * * * * *
105309606 AGCTTTTTGTGAGTGTCCTGTTTTATGATCAGTTGTGATACTGCATATGTTGCAAACACAAATAC
1 AGCTCTTTGTGAGTGCCCTGGTATATGATCAGTTGTGATACGGCATATATTGCAAACACAAACAC
*
105309671 AACTCTTTGTGAG
1 AGCTCTTTGTGAG
105309684 CATCCTGATG
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (65 bp):
AGCTCTTTGTGAGTGCCCTGGTATATGATCAGTTGTGATACGGCATATATTGCAAACACAAACAC
Found at i:105311060 original size:46 final size:48
Alignment explanation
Indices: 105310916--105311223 Score: 241
Period size: 46 Copynumber: 6.5 Consensus size: 48
105310906 TTTGTGTGCT
* * * *
105310916 AGTGTAAGA-CATGTCTGGGACATGCATCGTCCAC-ATTATG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCC
* * *
105310962 AGTGTAAGACCGTGTCTGGGACATGCCATCGGCAAT-GAGAT-TAGAGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC-CTCGAGATGTAGAGCC
105311010 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
* * * *
105311056 AGTGTATGA-TATGTCTAGGACATGCATCGG-CTACGAGATGT---GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCC
* *
105311100 AGTGTAAGACCATGTCTGGGACATGGCATCGG--TACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCT-C-GAGATGT-AGAGCC
* * ** * **
105311150 AGTGTAAGACCATGTCTGAGACATGGCATCGGCTTCGATTTCG-ATATTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGAT-GTAGAGCC
105311199 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
105311224 ACATTGACAT
Statistics
Matches: 219, Mismatches: 25, Indels: 34
0.79 0.09 0.12
Matches are distributed among these distances:
44 10 0.05
45 18 0.08
46 72 0.33
47 30 0.14
48 24 0.11
49 26 0.12
50 36 0.16
51 2 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:105312395 original size:20 final size:21
Alignment explanation
Indices: 105312357--105312395 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
105312347 TTATAATGAT
105312357 CACACGGGCATGTTGCCCTTC
1 CACACGGGCATGTTGCCCTTC
*
105312378 CACACTGGCATG-TGCCCT
1 CACACGGGCATGTTGCCCT
105312396 ATTTTAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.23
Consensus pattern (21 bp):
CACACGGGCATGTTGCCCTTC
Found at i:105312694 original size:26 final size:26
Alignment explanation
Indices: 105312660--105312737 Score: 72
Period size: 26 Copynumber: 3.1 Consensus size: 26
105312650 TATCTAAAGC
*
105312660 TCCTAATTAAAGGCTCTTTGTGAGCT
1 TCCTGATTAAAGGCTCTTTGTGAGCT
* * *
105312686 TCCTGATTAAAAG-TTTGTTGTGAACT
1 TCCTGATTAAAGGCTCT-TTGTGAGCT
* *
105312712 TCCTGATT-ATGGCTC-TTATGAGCT
1 TCCTGATTAAAGGCTCTTTGTGAGCT
105312736 TC
1 TC
105312738 TTGTTATATA
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
24 9 0.22
25 4 0.10
26 28 0.68
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (26 bp):
TCCTGATTAAAGGCTCTTTGTGAGCT
Found at i:105314800 original size:6 final size:6
Alignment explanation
Indices: 105314789--105314815 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
105314779 TTATTAACAA
105314789 GACTCG GACTCG GACTCG GACTCG GAC
1 GACTCG GACTCG GACTCG GACTCG GAC
105314816 GGATACATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (6 bp):
GACTCG
Found at i:105320690 original size:2 final size:2
Alignment explanation
Indices: 105320680--105320726 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
105320670 CACTTAAAAA
* * *
105320680 AT AT GT AT AT AT -T GT AT AT AT AT AT AT TT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105320721 AT AT AT
1 AT AT AT
105320727 GGCCACATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (2 bp):
AT
Found at i:105330220 original size:15 final size:15
Alignment explanation
Indices: 105330188--105330216 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
105330178 ATTTTTTGTG
105330188 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
105330203 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
105330217 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:105330750 original size:15 final size:15
Alignment explanation
Indices: 105330730--105330760 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
105330720 AAATATGAAA
105330730 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
105330745 GATATGTTTTGTATT
1 GATATGTTTTGGATT
105330760 G
1 G
105330761 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:105331367 original size:45 final size:45
Alignment explanation
Indices: 105331303--105331479 Score: 188
Period size: 45 Copynumber: 4.0 Consensus size: 45
105331293 AGGACTATGC
*
105331303 TATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATA
*
105331348 TATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATA
* * * * * *
105331393 TATGTGGTTAT-GAGTAAGACCATGTCCGGGACATCGGCATCG-TA
1 TATGT-GTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATA
* *
105331437 T-T-TGATTTC-TGTAAGACC-CTATCTGGGACAG-TGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATA
105331479 T
1 T
105331480 GAGATAGCAT
Statistics
Matches: 110, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
41 25 0.23
42 4 0.04
43 1 0.01
44 3 0.03
45 73 0.66
46 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATA
Found at i:105333588 original size:19 final size:17
Alignment explanation
Indices: 105333566--105333608 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
105333556 TATTCACTTA
105333566 TCCATTCACTATTTTAATT
1 TCCATTCAC-ATTTT-ATT
105333585 TCCAATTCACATTTTATT
1 TCC-ATTCACATTTTATT
105333603 T-CATTC
1 TCCATTC
105333609 CGAAACATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 4 0.17
17 1 0.04
18 4 0.17
19 8 0.35
20 6 0.26
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (17 bp):
TCCATTCACATTTTATT
Found at i:105337113 original size:55 final size:55
Alignment explanation
Indices: 105337029--105337138 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
105337019 TTTTAATTTG
105337029 ATTGAAAGATGAAATTAAGGTAAATATTTTGGAACAAATAAATTCAGATTTTGGC
1 ATTGAAAGATGAAATTAAGGTAAATATTTTGGAACAAATAAATTCAGATTTTGGC
105337084 ATTGAAAGATGAAATTAAGGTAAATATTTTGGAACAAATAAATTCAGATTTTGGC
1 ATTGAAAGATGAAATTAAGGTAAATATTTTGGAACAAATAAATTCAGATTTTGGC
105337139 TTTTAATTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.44, C:0.05, G:0.18, T:0.33
Consensus pattern (55 bp):
ATTGAAAGATGAAATTAAGGTAAATATTTTGGAACAAATAAATTCAGATTTTGGC
Found at i:105340044 original size:26 final size:25
Alignment explanation
Indices: 105340007--105340090 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 25
105339997 TGATACAAAT
105340007 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
* *
105340033 TGATAATGGGTTAGATAAATGCTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
105340059 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
105340085 TGATAA
1 TGATAA
105340091 GAATTTCATG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
26 50 0.96
27 2 0.04
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:105345095 original size:18 final size:17
Alignment explanation
Indices: 105345072--105345110 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
105345062 ATCAAAAGGT
105345072 TTTCTTCATTCTGTTATC
1 TTTCTTCATTCTGTT-TC
* *
105345090 TTTCTTTATTTTGTTTC
1 TTTCTTCATTCTGTTTC
105345107 TTTC
1 TTTC
105345111 ACAAGTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.08, C:0.18, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTCTTCATTCTGTTTC
Found at i:105346319 original size:26 final size:26
Alignment explanation
Indices: 105346290--105346339 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
105346280 AACTCAAACT
*
105346290 ATTTTATATGTAATTCATTTTAAAAA
1 ATTTTATATATAATTCATTTTAAAAA
* *
105346316 ATTTTATATATTATTTATTTTAAA
1 ATTTTATATATAATTCATTTTAAA
105346340 GCTCCTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
ATTTTATATATAATTCATTTTAAAAA
Found at i:105359202 original size:16 final size:16
Alignment explanation
Indices: 105359181--105359215 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
105359171 CCTTGAGGCA
105359181 AAAGTGCAAATATGTG
1 AAAGTGCAAATATGTG
105359197 AAAGTGCAAATATGTG
1 AAAGTGCAAATATGTG
105359213 AAA
1 AAA
105359216 ATTTAGGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.06, G:0.23, T:0.23
Consensus pattern (16 bp):
AAAGTGCAAATATGTG
Found at i:105359689 original size:50 final size:46
Alignment explanation
Indices: 105359585--105359689 Score: 131
Period size: 46 Copynumber: 2.2 Consensus size: 46
105359575 GACAGGACAG
* *
105359585 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
*
105359631 GACAGGAATGAGCCATGTAAG-CCTATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCC-ATATCAG----ATATATGGCATTGGA
105359681 GACAGGAAT
1 GACAGGAAT
105359690 AATTCACGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
45 2 0.04
46 26 0.51
50 23 0.45
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
Found at i:105361019 original size:44 final size:45
Alignment explanation
Indices: 105360969--105361081 Score: 142
Period size: 44 Copynumber: 2.5 Consensus size: 45
105360959 GGGTGATACA
* * **
105360969 TTATCTCCTTGAAGTTGCAGTGGAGCTGGTTGAAGTTACA-A-G-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--ACATAGGATC
105361013 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACATAGGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACATAGGATC
*
105361058 TTATTTCCCTGAAGTTGCAGTGGA
1 TTATCTCCCTGAAGTTGCAGTGGA
105361082 ATAGATTAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
42 3 0.05
43 1 0.02
44 32 0.52
45 25 0.41
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACATAGGATC
Found at i:105362201 original size:12 final size:12
Alignment explanation
Indices: 105362184--105362208 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
105362174 TGCCCATGCG
105362184 ACCCAACCCGAT
1 ACCCAACCCGAT
105362196 ACCCAACCCGAT
1 ACCCAACCCGAT
105362208 A
1 A
105362209 AATGAAGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.48, G:0.08, T:0.08
Consensus pattern (12 bp):
ACCCAACCCGAT
Found at i:105362973 original size:26 final size:26
Alignment explanation
Indices: 105362944--105362993 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
105362934 AACTCAAACT
*
105362944 ATTTTATATGTAATTCATTTTAAAAA
1 ATTTTATATATAATTCATTTTAAAAA
* *
105362970 ATTTTATATATTATTTATTTTAAA
1 ATTTTATATATAATTCATTTTAAA
105362994 GCTCCTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
ATTTTATATATAATTCATTTTAAAAA
Found at i:105368761 original size:26 final size:26
Alignment explanation
Indices: 105368725--105368832 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
105368715 TGAAATTCCA
105368725 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
105368751 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
105368777 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
105368803 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
105368829 ATCA
1 ATCA
105368833 AATTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:105369163 original size:19 final size:19
Alignment explanation
Indices: 105369139--105369176 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
105369129 TGCCCGGCCC
105369139 ACCAAACTAAAATACCCAA
1 ACCAAACTAAAATACCCAA
105369158 ACCAAACTAAAATACCCAA
1 ACCAAACTAAAATACCCAA
105369177 CAGCCCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.32, G:0.00, T:0.11
Consensus pattern (19 bp):
ACCAAACTAAAATACCCAA
Found at i:105370260 original size:3 final size:3
Alignment explanation
Indices: 105370252--105370344 Score: 127
Period size: 3 Copynumber: 31.3 Consensus size: 3
105370242 TGCCATTAAC
105370252 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
105370300 ATT ATT TTT ATT TTT ATT TTT ATT ACT ATT ACTT -TT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
105370344 A
1 A
105370345 CTACTACTGT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
2 4 0.05
3 74 0.93
4 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:105370349 original size:17 final size:17
Alignment explanation
Indices: 105370316--105370349 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
105370306 TTTATTTTTA
*
105370316 TTTTTATTACTATTACT
1 TTTTTATTACTACTACT
*
105370333 TTTTTATTATTACTACT
1 TTTTTATTACTACTACT
105370350 ACTGTTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTATTACTACTACT
Found at i:105370386 original size:16 final size:17
Alignment explanation
Indices: 105370354--105370391 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
105370344 ACTACTACTG
105370354 TTATTTTTATTAACATA
1 TTATTTTTATTAACATA
*
105370371 TTATTTTT-TTACCATA
1 TTATTTTTATTAACATA
105370387 TTATT
1 TTATT
105370392 ATTTCCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (17 bp):
TTATTTTTATTAACATA
Found at i:105370480 original size:15 final size:15
Alignment explanation
Indices: 105370460--105370490 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105370450 TATTATTTTC
105370460 TATTTATTACTATTA
1 TATTTATTACTATTA
105370475 TATTTATTACTATTA
1 TATTTATTACTATTA
105370490 T
1 T
105370491 TAATACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:105370581 original size:15 final size:15
Alignment explanation
Indices: 105370563--105370600 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
105370553 CCTACTTAGC
105370563 TATTATTACTATTAT
1 TATTATTACTATTAT
*
105370578 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
105370593 AATTATTA
1 TATTATTA
105370601 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:105375274 original size:20 final size:21
Alignment explanation
Indices: 105375249--105375287 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
105375239 AAGAATAGGG
*
105375249 ATAAATT-TGAAGATTTTACT
1 ATAAATTCTGAAAATTTTACT
105375269 ATAAATTCTGAAAATTTTA
1 ATAAATTCTGAAAATTTTA
105375288 TGGTAGAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (21 bp):
ATAAATTCTGAAAATTTTACT
Found at i:105385182 original size:66 final size:68
Alignment explanation
Indices: 105385106--105385292 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
105385096 TAGTACCACT
*
105385106 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
105385168 CACG
65 CACG
105385172 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
105385237 ATCACG
63 ATCACG
105385243 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
105385293 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:105385217 original size:71 final size:71
Alignment explanation
Indices: 105385129--105385292 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
105385119 CGATTTGTCT
105385129 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
105385194 CTTTCA
66 CTTTCA
105385200 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
105385265 CTTTCA
66 CTTTCA
105385271 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
105385293 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:105385330 original size:71 final size:70
Alignment explanation
Indices: 105385129--105385326 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
105385119 CGATTTGTCT
* * *
105385129 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
105385194 CTTTCA
65 CTTTCA
* * *
105385200 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
105385265 CTTTCA
65 CTTTCA
* *
105385271 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
105385327 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:105389540 original size:66 final size:68
Alignment explanation
Indices: 105389464--105389650 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
105389454 TAGTACCACT
*
105389464 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
105389526 CACG
65 CACG
105389530 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
105389595 ATCACG
63 ATCACG
105389601 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
105389651 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:105389575 original size:71 final size:71
Alignment explanation
Indices: 105389487--105389650 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
105389477 CGATTTGTCT
105389487 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
105389552 CTTTCA
66 CTTTCA
105389558 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
105389623 CTTTCA
66 CTTTCA
105389629 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
105389651 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:105389688 original size:71 final size:70
Alignment explanation
Indices: 105389487--105389684 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
105389477 CGATTTGTCT
* * *
105389487 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
105389552 CTTTCA
65 CTTTCA
* * *
105389558 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
105389623 CTTTCA
65 CTTTCA
* *
105389629 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
105389685 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:105393898 original size:66 final size:68
Alignment explanation
Indices: 105393822--105394008 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
105393812 TAGTACCACT
*
105393822 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
105393884 CACG
65 CACG
105393888 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
105393953 ATCACG
63 ATCACG
105393959 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
105394009 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Done.