Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 338 of 438
Found at i:105777910 original size:29 final size:30
Alignment explanation
Indices: 105777859--105777925 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
105777849 TTTATTCATA
105777859 TAATAAATTATTAATATAATAAA-TTATTT
1 TAATAAATTATTAATATAATAAATTTATTT
*
105777888 TAATAAATTATTTAATAT-TTAAATTTTATTT
1 TAATAAATTA-TTAATATAATAAA-TTTATTT
105777919 TAA-AAAT
1 TAATAAAT
105777926 AAAATTTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
29 14 0.41
30 11 0.32
31 9 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (30 bp):
TAATAAATTATTAATATAATAAATTTATTT
Found at i:105777932 original size:14 final size:15
Alignment explanation
Indices: 105777915--105777954 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 15
105777905 TTTAAATTTT
105777915 ATTTTAAAAATAA-A
1 ATTTTAAAAATAATA
105777929 A-TTTAAAAA-AATA
1 ATTTTAAAAATAATA
105777942 ATTTTAAATAATA
1 ATTTTAAA-AATA
105777955 TTTATTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.09
13 10 0.45
14 7 0.32
15 2 0.09
16 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTTTAAAAATAATA
Found at i:105781201 original size:16 final size:16
Alignment explanation
Indices: 105781182--105781228 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
105781172 TTCTGATTTT
105781182 TATTTTTATTTTTTGA
1 TATTTTTATTTTTTGA
* *
105781198 TATTTTTAAATTTCTGA
1 TATTTTT-ATTTTTTGA
105781215 -ATTTTGTATTTTTT
1 TATTTT-TATTTTTT
105781229 AAAATTTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (16 bp):
TATTTTTATTTTTTGA
Found at i:105781503 original size:20 final size:21
Alignment explanation
Indices: 105781453--105781504 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
105781443 CTTCCTTTTG
105781453 TTTTTAAAATTTTTTGAGATT
1 TTTTTAAAATTTTTTGAGATT
*
105781474 TTTTT-GAATTTTTTG-G-TT
1 TTTTTAAAATTTTTTGAGATT
105781492 ATTTTTAAAATTT
1 -TTTTTAAAATTT
105781505 ATTTCAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.07
19 6 0.22
20 14 0.52
21 5 0.19
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (21 bp):
TTTTTAAAATTTTTTGAGATT
Found at i:105784895 original size:30 final size:30
Alignment explanation
Indices: 105784862--105784922 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
105784852 TTTTTTTAAT
* *
105784862 ATATAT-AT-ATATATAGATCTAAAAGGAA
1 ATATATGATCATAAATAGATCTAAAAGAAA
*
105784890 ATATATGATCATAAATAGATTTAAAAGAAA
1 ATATATGATCATAAATAGATCTAAAAGAAA
105784920 ATA
1 ATA
105784923 CATAAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 6 0.21
29 2 0.07
30 20 0.71
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (30 bp):
ATATATGATCATAAATAGATCTAAAAGAAA
Found at i:105794072 original size:128 final size:127
Alignment explanation
Indices: 105793895--105794126 Score: 331
Period size: 128 Copynumber: 1.8 Consensus size: 127
105793885 CATGCACTGA
* * *
105793895 AATTTTAAAAGGATATTCGGTTATTTGGTCAAACGACAAATCGACACCCAGCACATTAGGGTACG
1 AATTTTAAAAGGATATTCGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACATTAGGGCACG
* *
105793960 ATTTCTCGAACTTCCAAACATGAAATATTGCCTTGTTTTCTAATTGAAGAAATCACAGATGG
66 ATTTCTCGAACTTACAAACATGAAATATTGCCTTATTTTCTAATTGAAGAAATCACAGATGG
* * * * *
105794022 AATTTTAAAAAGGGTATTTGGTCATTTGGTTAAACAGA-AAATTGAAACCCAGCACGTTAGGGCA
1 AATTTT-AAAAGGATATTCGGTCATTTGGTCAAAC-GACAAATCGAAACCCAGCACATTAGGGCA
* *
105794086 TGATTTCTCGAATTTACAAACATGAAATATTGCCTTATTTT
64 CGATTTCTCGAACTTACAAACATGAAATATTGCCTTATTTT
105794127 GAGAACTTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
127 6 0.07
128 83 0.91
129 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (127 bp):
AATTTTAAAAGGATATTCGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACATTAGGGCACG
ATTTCTCGAACTTACAAACATGAAATATTGCCTTATTTTCTAATTGAAGAAATCACAGATGG
Found at i:105794744 original size:22 final size:22
Alignment explanation
Indices: 105794716--105794759 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
105794706 AATGATAATG
105794716 TATGTCCATATAAAATTTTTAA
1 TATGTCCATATAAAATTTTTAA
105794738 TATGTCCATATAAAATTTTTAA
1 TATGTCCATATAAAATTTTTAA
105794760 AACAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (22 bp):
TATGTCCATATAAAATTTTTAA
Found at i:105797180 original size:133 final size:133
Alignment explanation
Indices: 105797022--105797329 Score: 413
Period size: 133 Copynumber: 2.3 Consensus size: 133
105797012 AAGATAATAC
* * * *
105797022 TACAATCTTCAACATGTTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAACTCTACTCCC
1 TACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAAATCTACTCCC
* * * *
105797087 CTACTACCTCGGGAAGATAAGATTCGCCCTCTTCGATCTACTTCATTACTGCTTAGGGAGATAAG
66 CTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTAGGGAGATAAG
105797152 ATA
131 ATA
* * *
105797155 TACAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGTTGATGGCTAAAATCTACTCCC
1 TACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAAATCTACTCCC
* * *
105797220 CTGCTACCTCGGGAAGATACGATTCGCCCTCTTCAATCTGCTCCACTAATGCTTAGGGAGATAAG
66 CTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTAGGGAGATAAG
*
105797285 ATC
131 ATA
* ** *
105797288 TACAATCCTCAGTCTGCT-TCCTTACTACCTCAG-GAAGATAAG
1 TACAATCTTCAACCTGCTCT-CTTGCTACCTCAGAG-AGATAAG
105797330 ACTACAATCC
Statistics
Matches: 152, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
132 2 0.01
133 150 0.99
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (133 bp):
TACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAAATCTACTCCC
CTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTAGGGAGATAAG
ATA
Found at i:105797181 original size:177 final size:175
Alignment explanation
Indices: 105796814--105797195 Score: 412
Period size: 177 Copynumber: 2.2 Consensus size: 175
105796804 GATTCGCTGT
* * * *
105796814 CTGCTCTCTTGCTACCTCAAGAAA-ATGAGACTACAATCTCCAGCCTGCTCCCTTGCTACCTTAG
1 CTGCTCTCTTGCTACCTC-AGAAAGATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAG
* * * *
105796878 GGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATTTT
65 AGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTT
* * **
105796943 CAATCTGTCCCACTGTTATCTCAAGGAGACAAGATCCACATCATCAGT
130 CAATCTCTCCCAC--TTATCTCAAGGAGACAAGATACACATCATCAAC
* * * *
105796991 CTGCT-TCCTTGCTACCTCAGAAAGATAATACTACAATCTTCAACATGTTCTCTTGCTACCTCAG
1 CTGCTCT-CTTGCTACCTCAGAAAGATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAG
* * *
105797055 AGAGATAAGGCTGGTGGCTAAACTCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTT
65 AGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTT
* * * * * * *
105797120 CGATCTACT-TCA-TTACTGCTTAGGGAGATAAGATATACAATCTTCAAC
130 CAATCT-CTCCCACTTA-T-CTCAAGGAGACAAGATACAC-ATCATCAAC
* *
105797168 CTGCTCTCTTGCTACCTTAGAGAGATAA
1 CTGCTCTCTTGCTACCTCAGAAAGATAA
105797196 AGTTGATGGC
Statistics
Matches: 170, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
174 3 0.02
175 1 0.01
176 21 0.12
177 143 0.84
178 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (175 bp):
CTGCTCTCTTGCTACCTCAGAAAGATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAGA
GAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTC
AATCTCTCCCACTTATCTCAAGGAGACAAGATACACATCATCAAC
Found at i:105797335 original size:44 final size:45
Alignment explanation
Indices: 105797277--105797373 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 45
105797267 AATGCTTAGG
**
105797277 GAGATAAGATCTACAATCCTCAGTCTGCT-TCCTTACTACCTCAG-
1 GAGATAAGATCTACAATCCTCAACCTGCTCT-CTTACTACCTCAGA
*
105797321 GAAGATAAGA-CTACAATCCTCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTACAATCCTCAACCTGCTCTCTTACTACCTCAGA
105797366 GAGATAAG
1 GAGATAAG
105797374 GCTGGTGGCT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
44 37 0.79
45 10 0.21
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (45 bp):
GAGATAAGATCTACAATCCTCAACCTGCTCTCTTACTACCTCAGA
Found at i:105797407 original size:310 final size:309
Alignment explanation
Indices: 105796845--105797506 Score: 866
Period size: 310 Copynumber: 2.1 Consensus size: 309
105796835 AAAATGAGAC
* * * *
105796845 TACAATCTCCAGCCTGCTCCCTTGCTACCTTAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCC
1 TACAATCTTCAGCCTGCTCTCTTGCTACCTTA-GGAGATAAAGCTAGTGGCTAAAATCTACTCCC
* *
105796910 CTGCTACCTCGGGAAGATAAGATTCGCCATTTTCAATCTGTCCCACTGTTATCTCAAGGAGACAA
65 CTGCTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTCCCAC-GTAATCTCAAGGAGACAA
* * * *
105796975 GATCCACATCATCAGTCTGCTTCCTTGCTACCTCAGAAAGATAATACTACAATCTTCAACATGTT
129 GATCCACATCATCAGTCTGCTTCCTTACTACCTCAGAAAGATAAGACTACAATCCTCAACATGCT
*
105797040 CTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAACTCTACTCCCCTACTACCTCGGGAAGAT
194 CTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGAT
* * * *
105797105 AAGATTCGCCCTCTTCGATCTACTTCATTACT-GCTTAGGGAGATAAGATA
259 AAGATTCGCCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGATA
* *
105797155 TACAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAG-TTGATGGCTAAAATCTACTCC
1 TACAATCTTCAGCCTGCTCTCTTGCTACCTTAG-GAGATAAAGCTAG-TGGCTAAAATCTACTCC
* * * * *
105797219 CCTGCTACCTCGGGAAGATACGATTCGCCCTCTTCAATCTG-CTCCAC-TAATGCTTAGGGAGAT
64 CCTGCTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTC-CCACGTAAT-CTCAAGGAGAC
* * * *
105797282 AAGATCTACAATCCTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTACAATCCTCAACCT
127 AAGATCCAC-ATCATCAGTCTGCTTCCTTACTACCTCAGAAAGATAAGACTACAATCCTCAACAT
* * *
105797347 GCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGCA
191 GCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAA
* * * * * *
105797412 GGTAAGATTCGCCGTCCTCGATCTGCTCCACTACTATCTCAGGGAGATGAGATC
256 GATAAGATTCGCCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGATA
** *
105797466 TTTAATCTTCAGTCTGCT-TCTTTGCTACCTTAGGAAGATAA
1 TACAATCTTCAGCCTGCTCTC-TTGCTACCTTAGG-AGATAA
105797507 GACTACAATC
Statistics
Matches: 305, Mismatches: 39, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
308 3 0.01
309 20 0.07
310 236 0.77
311 46 0.15
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (309 bp):
TACAATCTTCAGCCTGCTCTCTTGCTACCTTAGGAGATAAAGCTAGTGGCTAAAATCTACTCCCC
TGCTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTCCCACGTAATCTCAAGGAGACAAGA
TCCACATCATCAGTCTGCTTCCTTACTACCTCAGAAAGATAAGACTACAATCCTCAACATGCTCT
CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAA
GATTCGCCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGATA
Found at i:105797540 original size:178 final size:178
Alignment explanation
Indices: 105797138--105797644 Score: 694
Period size: 178 Copynumber: 2.8 Consensus size: 178
105797128 TTCATTACTG
* * * * * *
105797138 CTTAGGGAGATAAGATATACAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGTTGAT
1 CTTAGGAAGATAAGA-CTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGT
* * * *
105797203 GGCTAAAATCTACTCCCCTGCTACCTCGGGAAGATACGATTCGCCCTCTTCAATCTGCTCCACTA
65 GGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTA
*
105797268 --ATGCTTAGGGAGATAAGATCTACAATCCTCAGTCTGCTTCCTTACTAC
130 CTAT-CTCAGGGAGATAAGATCTACAATCCTCAGTCTGCTTCCTTACTAC
* *
105797316 CTCAGGAAGATAAGACTACAATCCTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
1 CTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
* * * *
105797381 GCTAAAATCTGCTCCCCTGCTACCTCGGGCAGGTAAGATTCGCCGTCCTCGATCTGCTCCACTAC
66 GCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAC
* ** * * *
105797446 TATCTCAGGGAGATGAGATCTTTAATCTTCAGTCTGCTTCTTTGCTAC
131 TATCTCAGGGAGATAAGATCTACAATCCTCAGTCTGCTTCCTTACTAC
* *
105797494 CTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTACTACCTCAGATAGATAAGGCTGGTG
1 CTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
* * * * *
105797559 GCTAAAATCTGTTCCCCTGCTACCTCGGAAAGATAAGATTCACCATCTTCGATTTGCTCCACTGC
66 GCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAC
* *
105797624 TACCTCATGGAGATAAGATCT
131 TATCTCAGGGAGATAAGATCT
105797645 GTGAATCCAC
Statistics
Matches: 289, Mismatches: 38, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
177 101 0.35
178 186 0.64
179 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (178 bp):
CTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
GCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAC
TATCTCAGGGAGATAAGATCTACAATCCTCAGTCTGCTTCCTTACTAC
Found at i:105797617 original size:89 final size:88
Alignment explanation
Indices: 105797312--105797617 Score: 217
Period size: 89 Copynumber: 3.4 Consensus size: 88
105797302 TGCTTCCTTA
* * * * * *
105797312 CTACCTCAGGAAGATAAGACT-ACAATCCTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGC
1 CTACCTC-GGAAGATAAGATTCACCATCTTCGATCTGCTCTCTTACTACCTCAGAGAGATAAGGC
*
105797376 TGGTGGCTAAAATCTGCTCCCCTG
65 TGGTGGCTAAAATCTGTTCCCCTG
* * * * * * * * *
105797400 CTACCTCGGGCAGGTAAGATTCGCCGTCCTCGATCTGCTC-CACTACTATCTCAGGGAGATGAGA
1 CTACCTC-GGAAGATAAGATTCACCATCTTCGATCTGCTCTC-TTACTACCTCAGAGAGATAAG-
* * ** ** * **
105797464 TCT-TTAATCTTCAGTCTGCTT-CTTTG
63 GCTGGT-GGCTAAAATCTG-TTCCCCTG
* * * * * *
105797490 CTACCTTAGGAAGATAAGACT-ACAATCTTCAACCTGCTCTCTTACTACCTCAGATAGATAAGGC
1 CTACC-TCGGAAGATAAGATTCACCATCTTCGATCTGCTCTCTTACTACCTCAGAGAGATAAGGC
105797554 TGGTGGCTAAAATCTGTTCCCCTG
65 TGGTGGCTAAAATCTGTTCCCCTG
*
105797578 CTACCTCGGAAAGATAAGATTCACCATCTTCGATTTGCTC
1 CTACCTCGG-AAGATAAGATTCACCATCTTCGATCTGCTC
105797618 CACTGCTACC
Statistics
Matches: 153, Mismatches: 54, Indels: 21
0.67 0.24 0.09
Matches are distributed among these distances:
87 5 0.03
88 45 0.29
89 73 0.48
90 28 0.18
91 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (88 bp):
CTACCTCGGAAGATAAGATTCACCATCTTCGATCTGCTCTCTTACTACCTCAGAGAGATAAGGCT
GGTGGCTAAAATCTGTTCCCCTG
Found at i:105802430 original size:22 final size:24
Alignment explanation
Indices: 105802382--105802427 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
105802372 GTAAGGCCCC
*
105802382 TTCTCTTGCTGCTGTTCAATTTTTG
1 TTCTCTTGCTGCTGGT-AATTTTTG
105802407 TTCTCTTGCTGCTGGT-ATTTT
1 TTCTCTTGCTGCTGGTAATTTT
105802428 GTTTCCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
25 15 0.75
ACGTcount: A:0.07, C:0.20, G:0.17, T:0.57
Consensus pattern (24 bp):
TTCTCTTGCTGCTGGTAATTTTTG
Found at i:105808957 original size:33 final size:31
Alignment explanation
Indices: 105808920--105808982 Score: 72
Period size: 33 Copynumber: 2.0 Consensus size: 31
105808910 ATATTAATAT
**
105808920 TATATCATGCATATCATATATGTTATGTACATA
1 TATATCATAAATATCATAT-TGTT-TGTACATA
**
105808953 TATATTGTAAATATCATATTGTTTGTACAT
1 TATATCATAAATATCATATTGTTTGTACAT
105808983 TCTATTATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 7 0.27
32 4 0.15
33 15 0.58
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.46
Consensus pattern (31 bp):
TATATCATAAATATCATATTGTTTGTACATA
Found at i:105809052 original size:20 final size:20
Alignment explanation
Indices: 105809027--105809065 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
105809017 CATTTCATAT
*
105809027 ATATATCCCGTATATTTTTA
1 ATATATCACGTATATTTTTA
*
105809047 ATATATCATGTATATTTTT
1 ATATATCACGTATATTTTT
105809066 TTTGTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (20 bp):
ATATATCACGTATATTTTTA
Found at i:105820575 original size:64 final size:64
Alignment explanation
Indices: 105820502--105820712 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
105820492 CTGGGCCAGA
*
105820502 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
105820566 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
105820628 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
105820639 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
105820703 GCCCATTTCA
1 GCCCATTTCA
105820713 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:105820588 original size:137 final size:137
Alignment explanation
Indices: 105820342--105820754 Score: 808
Period size: 137 Copynumber: 3.0 Consensus size: 137
105820332 AGCTCATTCA
*
105820342 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGAGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
*
105820407 CAGACAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
105820472 CCATTTG
131 CCATTTG
105820479 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
105820544 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
105820609 CCATTTG
131 CCATTTG
105820616 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
105820681 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
105820746 CCATTTG
131 CCATTTG
105820753 GG
1 GG
105820755 GAGACTACTC
Statistics
Matches: 274, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 274 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
CCATTTG
Found at i:105821063 original size:26 final size:27
Alignment explanation
Indices: 105821019--105821094 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
105821009 TCAGTTTAAC
* * *
105821019 CCTAGGGGTATTTCGGTAATTTTGC-A
1 CCTAGGGGTATTACAGTAATTTTCCAA
*
105821045 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATTACAGTAATTTTCCA-A
* *
105821073 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
105821095 AGCTATTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.51
28 20 0.49
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTCCAA
Found at i:105822556 original size:26 final size:26
Alignment explanation
Indices: 105822527--105822662 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
105822517 CATGATATTC
105822527 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
105822553 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
105822579 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105822605 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
105822631 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105822657 TTATCA
1 TTATCA
105822663 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:105824582 original size:87 final size:87
Alignment explanation
Indices: 105824409--105824605 Score: 225
Period size: 86 Copynumber: 2.3 Consensus size: 87
105824399 ACTGAATATC
* * * * * *
105824409 TACAGATCTTATCACCCTAAGCAATAGGGAAATAGATCGAATGCAATAGGTCTTAAACCCCTAAG
1 TACAGATCTTATCTCCCTAAGCAACAGGGAAACAGATCGAAGGCAAAAGGCCTTAAACCCCTAAG
*
105824474 GAGTAGGGTAACAGACCGAA-T
66 CAGTAGGGTAACAGACCGAATT
* * * * * *
105824495 TGCAGATCTTATCTCCCTCAGTAGCAGGGAAACAGATCGAAGGTAAAAGAGCCTTAAACCTCTAA
1 TACAGATCTTATCTCCCTAAGCAACAGGGAAACAGATCGAAGGCAAAAG-GCCTTAAACCCCTAA
* *
105824560 GCAGTAGGGTAACAGGCTGAATT
65 GCAGTAGGGTAACAGACCGAATT
* *
105824583 TATAGATCTTACCTCCCTAAGCA
1 TACAGATCTTATCTCCCTAAGCA
105824606 GTAGTGGAGC
Statistics
Matches: 89, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
86 39 0.44
87 31 0.35
88 19 0.21
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (87 bp):
TACAGATCTTATCTCCCTAAGCAACAGGGAAACAGATCGAAGGCAAAAGGCCTTAAACCCCTAAG
CAGTAGGGTAACAGACCGAATT
Found at i:105826558 original size:2 final size:2
Alignment explanation
Indices: 105826553--105826584 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
105826543 CATCCTTTTA
105826553 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105826585 GCTCCATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105826747 original size:20 final size:20
Alignment explanation
Indices: 105826722--105826760 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
105826712 CATTTCATAT
*
105826722 ATATATCCCGTATATTTTTA
1 ATATATCACGTATATTTTTA
*
105826742 ATATATCATGTATATTTTT
1 ATATATCACGTATATTTTT
105826761 TTGTTTCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (20 bp):
ATATATCACGTATATTTTTA
Found at i:105826838 original size:25 final size:26
Alignment explanation
Indices: 105826771--105826838 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 26
105826761 TTGTTTCTAT
105826771 TATTATATATATATTTTAATACCATATG
1 TATTAT-TAT-TATTTTAATACCATATG
** *
105826799 TATTATTATCGTTTT-ATACTAT-TG
1 TATTATTATTATTTTAATACCATATG
105826823 CTATTATTATTATTTT
1 -TATTATTATTATTTT
105826839 CGTTATCATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
24 2 0.06
25 19 0.56
26 4 0.12
27 3 0.09
28 6 0.18
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTATTATTATTTTAATACCATATG
Found at i:105828037 original size:33 final size:33
Alignment explanation
Indices: 105827975--105828037 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
105827965 CGAGTCATAG
* **
105827975 TGATGTGTGAGCTGTGTAATGTGTGAGCTACAA
1 TGATGTGTGAGCTGTGTAATGAGCAAGCTACAA
*
105828008 TGATGTGTGAGTTGTGTAATGAGCAAGCTA
1 TGATGTGTGAGCTGTGTAATGAGCAAGCTA
105828038 TGTAATGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.08, G:0.33, T:0.33
Consensus pattern (33 bp):
TGATGTGTGAGCTGTGTAATGAGCAAGCTACAA
Found at i:105831958 original size:16 final size:18
Alignment explanation
Indices: 105831934--105831986 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
105831924 TGTAAAAAAA
* *
105831934 ATTAAAATATAAAAATTT
1 ATTAATATATATAAATTT
105831952 ATTAATATGTATATAAATTT
1 ATTAATA--TATATAAATTT
*
105831972 ATTAATATATGTAAA
1 ATTAATATATATAAA
105831987 AATAACTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 13 0.43
20 17 0.57
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (18 bp):
ATTAATATATATAAATTT
Found at i:105831981 original size:22 final size:20
Alignment explanation
Indices: 105831941--105831989 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
105831931 AAAATTAAAA
105831941 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
105831961 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
105831981 TGTAAAAAT
1 TATAAAAAT
105831990 AACTTTAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:105832108 original size:20 final size:20
Alignment explanation
Indices: 105832079--105832116 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
105832069 ATATTTACAA
*
105832079 TAAATTATTTTCCAGAAAAG
1 TAAATCATTTTCCAGAAAAG
105832099 TAAATCATTTTCCAGAAA
1 TAAATCATTTTCCAGAAA
105832117 TCATTTTCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (20 bp):
TAAATCATTTTCCAGAAAAG
Found at i:105832119 original size:14 final size:14
Alignment explanation
Indices: 105832100--105832137 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
105832090 CCAGAAAAGT
105832100 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
105832114 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
105832128 AAAACATTTT
1 AAATCATTTT
105832138 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:105834771 original size:19 final size:21
Alignment explanation
Indices: 105834742--105834780 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
105834732 GACCAGGTTT
105834742 AAGGATTTTTAGGGT-TTTAA
1 AAGGATTTTTAGGGTATTTAA
105834762 AAGG-TTTTTAGGGTATTTA
1 AAGGATTTTTAGGGTATTTA
105834781 TCTTTTAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (21 bp):
AAGGATTTTTAGGGTATTTAA
Found at i:105835591 original size:19 final size:19
Alignment explanation
Indices: 105835567--105835613 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
105835557 CAAGATTTTC
105835567 AATCAAAGGATTTAGAACG
1 AATCAAAGGATTTAGAACG
105835586 AATCAAAGGATTTAGAACG
1 AATCAAAGGATTTAGAACG
105835605 AATCAAAGG
1 AATCAAAGG
105835614 TAATTATCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.49, C:0.11, G:0.21, T:0.19
Consensus pattern (19 bp):
AATCAAAGGATTTAGAACG
Found at i:105837009 original size:127 final size:126
Alignment explanation
Indices: 105836800--105837029 Score: 304
Period size: 127 Copynumber: 1.8 Consensus size: 126
105836790 CATGCATTGA
* * *
105836800 AATTTTAAAAGGATATTGGTTATTTGGTCAAACGACAAATCGACACCTAGCACGTTAGGGCACGA
1 AATTTTAAAAGGATATTGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACGTTAGGGCACGA
*
105836865 TTTCTCAAACTCCCAAAC-TCGAAATATTGCCTTGTTTTCTAATTGAAGAAATCACAGACGG
66 TTTCTCAAACTCCCAAACAT-GAAATATTGCCTTATTTTCTAATTGAAGAAATCACAGACGG
* *
105836926 AATTTTAAAAAGGGTATTTGGTCATTTGGTCAAACAGA-AAATTGAAACCCAGCACG-TAGGGCA
1 AATTTT-AAAAGGATA-TTGGTCATTTGGTCAAAC-GACAAATCGAAACCCAGCACGTTAGGGCA
* * ** *
105836989 CGATTTCTCGAATTTTCAAACATGAAATATTTCCTTATTTT
63 CGATTTCTCAAACTCCCAAACATGAAATATTGCCTTATTTT
105837030 GAGAATTTTT
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
126 6 0.07
127 48 0.54
128 33 0.37
129 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (126 bp):
AATTTTAAAAGGATATTGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACGTTAGGGCACGA
TTTCTCAAACTCCCAAACATGAAATATTGCCTTATTTTCTAATTGAAGAAATCACAGACGG
Found at i:105837839 original size:3 final size:3
Alignment explanation
Indices: 105837831--105837861 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
105837821 ACTTAATATA
105837831 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
105837862 GAAGGTGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:105844125 original size:2 final size:2
Alignment explanation
Indices: 105844120--105844161 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
105844110 TCAATAGAGT
*
105844120 TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105844162 GATACTACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:105844913 original size:18 final size:19
Alignment explanation
Indices: 105844890--105844931 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
105844880 ACTAATAACG
105844890 AAATAAATATTT-ATATGA
1 AAATAAATATTTAATATGA
*
105844908 AAATAAATATTTAATTTGA
1 AAATAAATATTTAATATGA
105844927 AAATA
1 AAATA
105844932 TTTAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
AAATAAATATTTAATATGA
Found at i:105845283 original size:6 final size:6
Alignment explanation
Indices: 105845274--105845350 Score: 111
Period size: 6 Copynumber: 12.7 Consensus size: 6
105845264 AATAATAAAT
105845274 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
* *
105845322 TTAA-A TAAATA TAATTATA TTAATA TTAA
1 TTAATA TTAATA T--TAATA TTAATA TTAA
105845351 ATAACATAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
5 4 0.06
6 56 0.88
8 4 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TTAATA
Found at i:105848387 original size:20 final size:20
Alignment explanation
Indices: 105848350--105848388 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
105848340 GTCTGATATA
105848350 TTTTGAAAAGTATTTATTAAT
1 TTTTGAAAAG-ATTTATTAAT
105848371 TTTTGAAAA-ATTGTATTA
1 TTTTGAAAAGATT-TATTA
105848389 GCTTTGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 5 0.29
21 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTTGAAAAGATTTATTAAT
Found at i:105850657 original size:39 final size:38
Alignment explanation
Indices: 105850608--105850755 Score: 190
Period size: 39 Copynumber: 3.9 Consensus size: 38
105850598 AAAAAGTATG
*
105850608 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGTATG-GGAAGTA
*
105850647 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAATA
1 GTTTTAATTAACAATAAAACAAAATAGTAT-GGGAAGTA
* * *
105850686 GATTTAATTAACAATAAAACAAAATAGCATGGGGAGT-
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
* * * *
105850723 GTTTTTATTAATAATAAAACAAAGTAGCATGGG
1 GTTTTAATTAACAATAAAACAAAATAGTATGGG
105850756 GGGAGTGGAA
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
37 29 0.30
38 5 0.05
39 63 0.64
40 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.29
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
Found at i:105850759 original size:78 final size:78
Alignment explanation
Indices: 105850610--105850756 Score: 217
Period size: 76 Copynumber: 1.9 Consensus size: 78
105850600 AAAGTATGGT
* * *
105850610 TTTAATTAATAATAAAACAAAATAGTATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATAGT
1 TTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATAGC
105850675 ATGGGGAAATAGA
66 ATGGGGAAATAGA
* * * *
105850688 TTTAATTAACAATAAAACAAAATAGCATG-GGGAGT-GTTTTTATTAATAATAAAACAAAGTAGC
1 TTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATAGC
105850751 ATGGGG
66 ATGGGG
105850757 GGAGTGGAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
76 30 0.48
77 5 0.08
78 27 0.44
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.29
Consensus pattern (78 bp):
TTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATAGC
ATGGGGAAATAGA
Found at i:105851300 original size:2 final size:2
Alignment explanation
Indices: 105851293--105851317 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
105851283 TATGTTACAT
105851293 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
105851318 CTTTTAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105855256 original size:17 final size:15
Alignment explanation
Indices: 105855226--105855254 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
105855216 TTTACTTTCC
105855226 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
105855241 AGAGAGGTAGAAAA
1 AGAGAGGTAGAAAA
105855255 AAAATCTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.38, T:0.07
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:105863783 original size:210 final size:210
Alignment explanation
Indices: 105863238--105865246 Score: 2889
Period size: 210 Copynumber: 9.7 Consensus size: 210
105863228 TCATCGGGGT
* * * * * *
105863238 AGATCTAAGATGACAGATCTTATCTTTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105863303 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
* * *
105863368 ACGAATCGAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTGACCTTCA
131 ACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTTCA
*
105863431 GATGTTTATGCTGAAGC
194 GATGTTTACGCTGAAGC
* * * * ** * * * *
105863448 GGGTCCAAGATG---G-T-TTGGCATC-CT-TGTGTT-TACAAGGAACAAATCGAAGACATAGCT
1 AGATCCAAGATGACAGATCTT---ATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCT
* * * *
105863505 AATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGTCGTCTCCGTATTATCAG
63 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
* * *
105863570 AGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAAATATTACTTTC
128 AGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTC
105863635 AGATGTTTACGCTGAAGC
193 AGATGTTTACGCTGAAGC
* * *
105863653 GGATCCAAGATGACAGATCTTATCTCTCTATATTCAGCAGGGAGCAGATCGAAGATATAACTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105863718 TTGGCTTTCACGTGTTTACGATAAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
105863783 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
105863848 TGTTTACGCTGAAGC
196 TGTTTACGCTGAAGC
* * *
105863863 AGATCCAAGATGACAGATCTTATCTCTCTGTATTTGGCAGGGAGCAGATCGAAGATATAGCTAAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105863928 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTTTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGTCAGAG
*
105863993 AACAAATCGAAGTCTGG-A-----A-----AT---AGGCAGACACATAGTAGATCTTACCTTCAG
130 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
105864044 ATGTTTACGCTGAAGC
195 ATGTTTACGCTGAAGC
* * *
105864060 AGATCCAAGATGACAGATCTTATATCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAACTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* *
105864125 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATAATTTGTCATCTCTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGTCAGAG
*
105864190 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTTAG
130 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
*
105864255 ATGTTTATGCTGAAGC
195 ATGTTTACGCTGAAGC
105864271 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* * * *
105864336 TTGGCTTTCACGTATTTTCGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAAA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
105864401 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
105864466 TGTTTACGCTGAAGC
196 TGTTTACGCTGAAGC
*
105864481 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105864546 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTTTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGTCAGAG
* * *
105864611 AACAAATTGAAGTCTAGCATTTCCACTTTGATGGAAGGCAGACACTTAGCAGATCTTACCTTCAG
130 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
* *
105864676 ATGTTTATGCTGAAGT
195 ATGTTTACGCTGAAGC
* * *
105864692 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAAGGAGCAGATCAAAGATATAGTTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105864757 TTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
*
105864822 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCCTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
105864887 TGTTTACGCTGAAGC
196 TGTTTACGCTGAAGC
* * *
105864902 AGATCCAAGATGACAGATCTTATCTCTCTATATTTGGCAGGGAACAGATCAAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105864967 TTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
* * * * * **
105865032 ACGAATCAAAGTTTGGCATCGT-CACTTTGATGGAAAGCAGACACATAGCAGATCTCGCCTTCAG
131 ACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
*
105865096 ATGTTTATGCTGAAGC
195 ATGTTTACGCTGAAGC
* ** * ** * * *
105865112 GGATCCAAGATG---G-T-TTGGCATC-CT-TATGCTTACAAGGAGCAAATCG-A-ATCATAGTT
1 AGATCCAAGATGACAGATCTTATC-TCTCTATATTC-GGCAGGGAGCAGATCGAAGAT-ATAGCT
* * * * *
105865168 GATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
63 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
*
105865233 GGAACAAATCGAAG
128 AGAACAAATCGAAG
105865247 AAGCAGATTT
Statistics
Matches: 1638, Mismatches: 128, Indels: 72
0.89 0.07 0.04
Matches are distributed among these distances:
197 185 0.11
198 1 0.00
200 2 0.00
203 3 0.00
204 81 0.05
205 178 0.11
206 11 0.01
207 6 0.00
208 8 0.00
209 5 0.00
210 776 0.47
211 382 0.23
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (210 bp):
AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
TGTTTACGCTGAAGC
Found at i:105864427 original size:618 final size:619
Alignment explanation
Indices: 105863238--105865246 Score: 2854
Period size: 618 Copynumber: 3.2 Consensus size: 619
105863228 TCATCGGGGT
* * * * *
105863238 AGATCTAAGATGACAGATCTTATCTTTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
105863303 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
* * *
105863368 ACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTGACCTTCAGA
131 ACAAATCGAAGTCTGG-A---T-A---T-AT-GAG-GCAGACACATAGCAGATCTTACCTTCAGA
* * ** * ** * *
105863433 TGTTTATGCTGAAGCGGGTCCAAGATG---G-T-TTGGCATC-CTTGTGTT-TACAAGGAACAAA
185 TGTTTATGCTGAAGCAGATCCAAGATGACAGATCTT-ATATCTC-TGTATTCGGCAAGGAGCAGA
* * *
105863491 TCGAAGACATAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGTCGT
248 TCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGT
* *
105863556 CTCCGTATTATCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAG
313 CTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAG
* * *
105863621 CAAATATTA-CTTTCAGATGTTTACGCTGAAGCGGATCCAAGATGACAGATCTTATCTCTCTATA
378 CAGATCTTACCTTT-AGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATA
* * * *
105863685 TTCAGCAGGGAGCAGATCGAAGATATAACTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATC
442 TTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATC
105863750 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATG
507 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATG
105863815 GAAGGCAGACACATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
572 GAAGGCAGACACATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
* *
105863863 AGATCCAAGATGACAGATCTTATCTCTCTGTATTTGGCAGGGAGCAGATCGAAGATATAGCTAAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* *
105863928 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTTTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTA-TTGTCAGAG
* *
105863993 AACAAATCGAAGTCTGGA-A-AT-AGGCAGACACATAGTAGATCTTACCTTCAGATGTTTACGCT
130 AACAAATCGAAGTCTGGATATATGAGGCAGACACATAGCAGATCTTACCTTCAGATGTTTATGCT
* *
105864055 GAAGCAGATCCAAGATGACAGATCTTATATCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAA
195 GAAGCAGATCCAAGATGACAGATCTTATATCTCTGTATTCGGCAAGGAGCAGATCGAAGATATAG
* *
105864120 CTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATAATTTGTCATCTCTGTATTTGT
260 CTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGT
105864185 CAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACC
324 CAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACC
*
105864250 TTTAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAG
389 TTTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAG
*
105864315 CAGATCGAAGATATAGCTGATTTGGCTTTCACGTATTTTCGATGAAGCAAATCTAAGATGATTTG
454 CAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTG
* *
105864380 TCATCTCTGTATTGTCAGAAAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACAC
519 TCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACAC
105864445 ATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
584 ATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
105864481 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* *
105864546 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTTTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTA-TTGTCAGAG
* * *
105864611 AACAAATTGAAGTCTAGCATTTCCACTTTGATGGAAGGCAGACACTTAGCAGATCTTACCTTCAG
130 AACAAATCGAAGTCT-GGA--T--A---T-AT-G-AGGCAGACACATAGCAGATCTTACCTTCAG
* * *
105864676 ATGTTTATGCTGAAGTAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAAGGAGCAGAT
184 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATATCTCTGTATTCGGCAAGGAGCAGAT
* * *
105864741 CAAAGATATAGTTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTC
249 CGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTC
105864806 TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
314 TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
* *
105864871 AGATCTTACCCTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATT
379 AGATCTTACCTTTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATT
* * *
105864936 TGGCAGGGAACAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTA
444 CGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTA
* * * *
105865001 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCGT-CACTTTGATGG
509 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGG
* ** *
105865065 AAAGCAGACACATAGCAGATCTCGCCTTCAGATGTTTATGCTGAAGC
573 AAGGCAGACACATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
* ** * ** * * *
105865112 GGATCCAAGATG---G-T-TTGGCATC-CT-TATGCTTACAAGGAGCAAATCG-A-ATCATAGTT
1 AGATCCAAGATGACAGATCTTATC-TCTCTGTATTC-GGCAGGGAGCAGATCGAAGAT-ATAGCT
* * * *
105865168 GATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
63 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAG
*
105865233 GGAACAAATCGAAG
128 AGAACAAATCGAAG
105865247 AAGCAGATTT
Statistics
Matches: 1262, Mismatches: 94, Indels: 57
0.89 0.07 0.04
Matches are distributed among these distances:
612 51 0.04
613 2 0.00
615 3 0.00
616 9 0.01
617 76 0.06
618 425 0.34
619 6 0.00
620 1 0.00
624 22 0.02
625 174 0.14
626 41 0.03
627 3 0.00
628 1 0.00
629 2 0.00
631 292 0.23
632 154 0.12
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (619 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGATATATGAGGCAGACACATAGCAGATCTTACCTTCAGATGTTTATGCTG
AAGCAGATCCAAGATGACAGATCTTATATCTCTGTATTCGGCAAGGAGCAGATCGAAGATATAGC
TGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCA
GAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTT
TAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCA
GATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTC
GTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACAT
AGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
Found at i:105864633 original size:421 final size:420
Alignment explanation
Indices: 105863238--105865246 Score: 2934
Period size: 421 Copynumber: 4.8 Consensus size: 420
105863228 TCATCGGGGT
* * * * *
105863238 AGATCTAAGATGACAGATCTTATCTTTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105863303 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
* * *
105863368 ACGAATCGAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTGACCTTCA
131 ACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTTCA
* * * * ** *
105863431 GATGTTTATGCTGAAGCGGGTCCAAGATG---G-T-TTGGCATC-CT-TGTGTT-TACAAGGAAC
194 GATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTT---ATCTCTCTATATTCGGCAAGGAGC
* * * *
105863488 AAATCGAAGACATAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGT
256 AGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGT
* *
105863553 CGTCTCCGTATTATCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACA
321 CGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACA
* * *
105863618 TAGCAAATATTACTTTCAGATGTTTACGCTGAAGC
386 TAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
* * * *
105863653 GGATCCAAGATGACAGATCTTATCTCTCTATATTCAGCAGGGAGCAGATCGAAGATATAACTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105863718 TTGGCTTTCACGTGTTTACGATAAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
105863783 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
* * * *
105863848 TGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTTGGCAGGGAGCAGATC
196 TGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAAGGAGCAGATC
*
105863913 GAAGATATAGCTAATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCT
261 GAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCT
* *
105863978 TTGTATTTGTCAGAGAACAAATCGAAGTCTGG-A-----A-----AT---AGGCAGACACATAGT
326 CTGTA-TTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
105864029 AGATCTTACCTTCAGATGTTTACGCTGAAGC
390 AGATCTTACCTTCAGATGTTTACGCTGAAGC
* *
105864060 AGATCCAAGATGACAGATCTTATATCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAACTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* *
105864125 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATAATTTGTCATCTCTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGTCAGAG
*
105864190 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTTAG
130 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
*
105864255 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGCAGAT
195 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAAGGAGCAGAT
* * *
105864320 CGAAGATATAGCTGATTTGGCTTTCACGTATTTTCGATGAAGCAAATCTAAGATGATTTGTCATC
260 CGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTC
*
105864385 TCTGTATTGTCAGAAAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
325 TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
105864450 AGATCTTACCTTCAGATGTTTACGCTGAAGC
390 AGATCTTACCTTCAGATGTTTACGCTGAAGC
105864481 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105864546 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTTTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGTCAGAG
* * *
105864611 AACAAATTGAAGTCTAGCATTTCCACTTTGATGGAAGGCAGACACTTAGCAGATCTTACCTTCAG
130 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
*
105864676 ATGTTTATGCTGAAGTAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAAGGAGCAGAT
195 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAAGGAGCAGAT
* * *
105864741 CAAAGATATAGTTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTC
260 CGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTC
105864806 TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
325 TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
*
105864871 AGATCTTACCCTCAGATGTTTACGCTGAAGC
390 AGATCTTACCTTCAGATGTTTACGCTGAAGC
* * * *
105864902 AGATCCAAGATGACAGATCTTATCTCTCTATATTTGGCAGGGAACAGATCAAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
105864967 TTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
* * * * * **
105865032 ACGAATCAAAGTTTGGCATCGT-CACTTTGATGGAAAGCAGACACATAGCAGATCTCGCCTTCAG
131 ACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
* ** * ** *
105865096 ATGTTTATGCTGAAGCGGATCCAAGATG---G-T-TTGGCATC-CT-TATGCTTACAAGGAGCAA
195 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATC-TCTCTATATTC-GGCAAGGAGCAG
* * * * *
105865154 ATCG-A-ATCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGC
258 ATCGAAGAT-ATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTC
* *
105865217 ATCTCTGTATTGTCAGGGAACAAATCGAAG
322 GTCTCTGTATTGTCAGAGAACAAATCGAAG
105865247 AAGCAGATTT
Statistics
Matches: 1465, Mismatches: 99, Indels: 61
0.90 0.06 0.04
Matches are distributed among these distances:
407 180 0.12
408 202 0.14
410 2 0.00
413 3 0.00
414 85 0.06
415 217 0.15
416 5 0.00
417 4 0.00
418 5 0.00
419 6 0.00
420 167 0.11
421 589 0.40
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (420 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
TGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAAGGAGCAGATC
GAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCT
CTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCA
GATCTTACCTTCAGATGTTTACGCTGAAGC
Found at i:105865399 original size:38 final size:38
Alignment explanation
Indices: 105865346--105865418 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
105865336 GCAAATTTGG
* *
105865346 CGTCTCTGTATTAGACG-GGGAGCAGATCGAAGATAATT
1 CGTCTCTGTAGTAGACGCGGG-GCAGATCAAAGATAATT
105865384 CGTCTCTGTAGTAGACGCGGGGCAGATCAAAGATA
1 CGTCTCTGTAGTAGACGCGGGGCAGATCAAAGATA
105865419 GCAGATATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
38 29 0.91
39 3 0.09
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (38 bp):
CGTCTCTGTAGTAGACGCGGGGCAGATCAAAGATAATT
Found at i:105866875 original size:27 final size:27
Alignment explanation
Indices: 105866844--105866949 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
105866834 GCTGCCAGAG
* *
105866844 CAGATAATGTGACAGAGTCACCAGATA
1 CAGATAATGTGGCAGAGCCACCAGATA
*
105866871 CAGATAGTCGTGGCAGAGCCACCAGA-A
1 CAGATAAT-GTGGCAGAGCCACCAGATA
105866898 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATA-ATGTGGCAGAGCCACCAGATA
*
105866925 CAGATAATTGTGGCATAGCCACCAG
1 CAGATAA-TGTGGCAGAGCCACCAG
105866950 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 53 0.76
28 16 0.23
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
CAGATAATGTGGCAGAGCCACCAGATA
Found at i:105866903 original size:54 final size:54
Alignment explanation
Indices: 105866838--105866949 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
105866828 AGCAGGGCTG
* * *
105866838 CCAGAGCAGATA-ATGTGACAGAGTCACCAGATACAGATAGTCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
105866892 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
105866946 CCAG
1 CCAG
105866950 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:105867117 original size:28 final size:26
Alignment explanation
Indices: 105867055--105867117 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
105867045 CAAGTAACCT
** * *
105867055 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
105867081 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
105867109 TAGGGGTAT
1 TAGGGGTAT
105867118 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:105869456 original size:38 final size:38
Alignment explanation
Indices: 105869414--105869488 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
105869404 TAGAATAAGC
*
105869414 ATTTAATGCTTAGTAAGTTCTATAACAAAAAATTAACA
1 ATTTAATGCTTAGTAAGTTATATAACAAAAAATTAACA
**
105869452 ATTTAATGCTTAGTAAGTTATATAACGGAAAATTAAC
1 ATTTAATGCTTAGTAAGTTATATAACAAAAAATTAAC
105869489 TTACCATTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (38 bp):
ATTTAATGCTTAGTAAGTTATATAACAAAAAATTAACA
Found at i:105869863 original size:25 final size:25
Alignment explanation
Indices: 105869792--105869903 Score: 77
Period size: 25 Copynumber: 4.5 Consensus size: 25
105869782 AATTTATATT
**
105869792 CGAGAATGCTCATACGAGCACATA-AA
1 CGAGAA-GCTCATGTGAGC-CATATAA
* *
105869818 CGAGAAGCTCTTTTGAGCCATATAA
1 CGAGAAGCTCATGTGAGCCATATAA
* * * *
105869843 GGGGAAGCTCATGTGATCCATGTAA
1 CGAGAAGCTCATGTGAGCCATATAA
*
105869868 CGAGAAGCTCCA-GAGAGCCAT-TAA
1 CGAGAAGCT-CATGTGAGCCATATAA
* *
105869892 TGAGAAACTCAT
1 CGAGAAGCTCAT
105869904 ACGAGCCAAT
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
23 2 0.03
24 14 0.21
25 44 0.65
26 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (25 bp):
CGAGAAGCTCATGTGAGCCATATAA
Found at i:105871427 original size:47 final size:46
Alignment explanation
Indices: 105871310--105871530 Score: 164
Period size: 47 Copynumber: 4.6 Consensus size: 46
105871300 TCATTTGTGC
* * *
105871310 GCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCATATTATAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGG-CATATGACAAGA
*
105871356 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-TGAGACAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATAT--GACAAGA
* * * * *
105871404 GCTAGTGTAAGACGTGTCTGGGACATGGCATTGGCACGTAT-AGAGGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCA--TATGACAAGA
* * **
105871451 G-TCAGTGTAAGACCATGTCTGGGACATGACATCGACACAGATATG-TGAGA
1 GCT-AGTGTAAGA-CATGTCTGGGACATGGCATCG--GC--ATATGACAAGA
*
105871501 GCTAGTGTAAGACAATGTCTAGGACATGGC
1 GCTAGTGTAAGAC-ATGTCTGGGACATGGC
105871531 GTTGGCCTCG
Statistics
Matches: 139, Mismatches: 20, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
46 14 0.10
47 49 0.35
48 42 0.30
49 2 0.01
50 30 0.22
51 1 0.01
52 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATATGACAAGA
Found at i:105874523 original size:41 final size:41
Alignment explanation
Indices: 105874478--105874595 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
105874468 TGAAAGATAA
105874478 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
105874519 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105874549 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105874590 ATGTAG
1 ATGTAG
105874596 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:105874534 original size:71 final size:71
Alignment explanation
Indices: 105874446--105874609 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
105874436 GAGATGTATC
105874446 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105874511 AGGACA
66 AGGACA
105874517 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105874582 AGGACA
66 AGGACA
105874588 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
105874610 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:105882103 original size:41 final size:41
Alignment explanation
Indices: 105882058--105882175 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
105882048 TGAAAGATAA
105882058 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
105882099 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105882129 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
105882170 ATGTAG
1 ATGTAG
105882176 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:105882114 original size:71 final size:71
Alignment explanation
Indices: 105882026--105882189 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
105882016 GAGATGTATC
105882026 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105882091 AGGACA
66 AGGACA
105882097 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
105882162 AGGACA
66 AGGACA
105882168 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
105882190 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:105889535 original size:46 final size:47
Alignment explanation
Indices: 105889389--105889569 Score: 156
Period size: 46 Copynumber: 3.9 Consensus size: 47
105889379 TTTGTGCACT
* * * * *
105889389 AGTGTAAGACATGTCTGAGACATACATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCC
* * * * * *
105889435 AGTGTAAGACAATGTCTGGGACATGGCATCGACATTGAGACG-AGAGCT
1 AGTGTAAAAC-ATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
**
105889483 AGTGTAAAATGTGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
* *
105889529 AGTGTAAGACATGTCTTGGACATGCATCGG-CTACGAGATGT
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCT-CGAGATGT
105889570 GTCAGTGTAA
Statistics
Matches: 109, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 60 0.55
47 25 0.23
48 21 0.19
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAAACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:105895263 original size:132 final size:132
Alignment explanation
Indices: 105895026--105895282 Score: 478
Period size: 132 Copynumber: 1.9 Consensus size: 132
105895016 GAGTGGCATG
*
105895026 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCAGTTTATATTGATC
1 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCAGCTTATATTGATC
*
105895091 TATTGTATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAGCCTAATTATTCCTACT
66 TATTGGATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAGCCTAATTATTCCTACT
105895156 AT
131 AT
*
105895158 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
1 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCAGCTTATATTGATC
*
105895223 TATTGGATATAGCCATGAGATGTGGCTTATTATGGTTATGGCTTGTAAGCCTAATTATTC
66 TATTGGATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAGCCTAATTATTC
105895283 TTGCTATGGG
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 121 1.00
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (132 bp):
TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCAGCTTATATTGATC
TATTGGATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAGCCTAATTATTCCTACT
AT
Found at i:105902839 original size:25 final size:25
Alignment explanation
Indices: 105902801--105902852 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
105902791 TTTGGCTTGA
*
105902801 CATTTACTAAGCAACATCAGATATT
1 CATTTACTAAGCAACATCAAATATT
* * *
105902826 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAACATCAAATATT
105902851 CA
1 CA
105902853 AATTATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (25 bp):
CATTTACTAAGCAACATCAAATATT
Found at i:105908093 original size:40 final size:40
Alignment explanation
Indices: 105907966--105908095 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
105907956 ATGCTGGAAA
* *
105907966 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
105908006 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
105908046 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
105908086 TTATATCCGG
1 TTATATCCGG
105908096 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:105925181 original size:10 final size:10
Alignment explanation
Indices: 105925147--105925175 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
105925137 TTTTATATCA
105925147 AATTTTGATT
1 AATTTTGATT
105925157 AATTTTGATT
1 AATTTTGATT
105925167 AATTTTGAT
1 AATTTTGAT
105925176 AGATTTGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (10 bp):
AATTTTGATT
Found at i:105930752 original size:40 final size:39
Alignment explanation
Indices: 105930707--105930914 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
105930697 CGGAATACAA
*
105930707 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
105930747 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
105930787 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
105930827 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
105930867 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
105930907 CCGGATAT
1 CCGGATAT
105930915 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:105930847 original size:80 final size:81
Alignment explanation
Indices: 105930707--105930912 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
105930697 CGGAATACAA
* * *
105930707 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
105930771 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
105930787 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
105930850 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
105930867 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
105930913 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:105931102 original size:121 final size:121
Alignment explanation
Indices: 105930893--105931217 Score: 569
Period size: 121 Copynumber: 2.6 Consensus size: 121
105930883 GCATAAATGT
* *
105930893 CTTCGGGACTTAGCCCGGATATCATTCAATTGCTCATGCACACACATACATCAATAATCATTACA
1 CTTCGGGACTTAGCCCGGGTATCATTCAA-TACTCAT--ACACACATA-ATCAATAATCATTACA
*
105930958 CATCCATGTTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTTGCATAATCGC
62 CATCCATGTTTCATTTTCATTACTAAGGCTCAAACACAAACATATCACTTGCATAATCGC
105931018 CTTCGGGACTTAGCCCGGGTATCATTCAATACTCATACACACATAATCAATAATCATTACACATC
1 CTTCGGGACTTAGCCCGGGTATCATTCAATACTCATACACACATAATCAATAATCATTACACATC
105931083 CATGTTTCATTTTCATTACTAAGGCTCAAACACAAACATATCACTTGCATAATCGC
66 CATGTTTCATTTTCATTACTAAGGCTCAAACACAAACATATCACTTGCATAATCGC
105931139 CTTCGGGACTTAGCCCGGGTATCATTCAAATACTCATACACACATAAATCAATAATCATTACACA
1 CTTCGGGACTTAGCCCGGGTATCATTC-AATACTCATACACACAT-AATCAATAATCATTACACA
105931204 TCCATGTTTCATTT
64 TCCATGTTTCATTT
105931218 CACATAATTC
Statistics
Matches: 195, Mismatches: 3, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
121 102 0.52
122 26 0.13
123 33 0.17
124 6 0.03
125 28 0.14
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.30
Consensus pattern (121 bp):
CTTCGGGACTTAGCCCGGGTATCATTCAATACTCATACACACATAATCAATAATCATTACACATC
CATGTTTCATTTTCATTACTAAGGCTCAAACACAAACATATCACTTGCATAATCGC
Found at i:105938900 original size:40 final size:40
Alignment explanation
Indices: 105938855--105939062 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
105938845 CGGAATACAA
*
105938855 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* * * *
105938895 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* * * *
105938935 NCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 -CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* ** * *
105938976 CCGGATGTAGTCAC-TAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACAT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
105939016 CCGGATATAATTACA-GCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
105939055 CCGGATAT
1 CCGGATAT
105939063 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
39 28 0.20
40 77 0.55
41 35 0.25
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
Found at i:105938996 original size:81 final size:80
Alignment explanation
Indices: 105938855--105939061 Score: 240
Period size: 81 Copynumber: 2.6 Consensus size: 80
105938845 CGGAATACAA
* *
105938855 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
105938920 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAGC
* * *
105938935 NCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAA
1 -CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAA
* * *
105938998 TTGCCTTCGGGTCTTAAC
63 ATGCCTTCGGGTATTAGC
** ** * *
105939016 CCGGATATAATTACA-GCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATA
105939062 TCATTCAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 27 0.25
80 13 0.12
81 67 0.63
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAGC
Found at i:105945643 original size:40 final size:39
Alignment explanation
Indices: 105945546--105945746 Score: 201
Period size: 39 Copynumber: 5.1 Consensus size: 39
105945536 CGGAATACAA
** *
105945546 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
*
105945586 CC-GATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
*
105945625 CCGGATATAACAACTTGCACGAATGCC-TCGGGTCTTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
105945664 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
105945704 CCGGATATAATTACTAGCATAAATGTCTTC-GGACTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
105945743 CCGG
1 CCGG
105945747 GTCATTCAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 75 0.56
40 59 0.44
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:105945684 original size:79 final size:79
Alignment explanation
Indices: 105945546--105945713 Score: 223
Period size: 79 Copynumber: 2.1 Consensus size: 79
105945536 CGGAATACAA
* *
105945546 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGATATAACGACTTGCACAAATGC
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGATATAACGACTAGCACAAATGC
*
105945611 CTTCGGGTATTAGC
66 CTTCGGGTATTAAC
** * * *
105945625 CCGGATATAACAACTTGCACGAATGCC-TCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCC-GATATA-ACGACTAGCACAAAT
*
105945688 GCCTTCGGGTCTTAAC
64 GCCTTCGGGTATTAAC
105945704 CCGGATATAA
1 CCGGATATAA
105945714 TTACTAGCAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 14 0.18
79 63 0.81
80 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGATATAACGACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:105945741 original size:79 final size:79
Alignment explanation
Indices: 105945546--105945746 Score: 194
Period size: 79 Copynumber: 2.5 Consensus size: 79
105945536 CGGAATACAA
* * * * * *
105945546 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGCCC-GATATA-ACGACTTGCACAAA
1 CCGGATATAACAACTA-GCACAAATGCC-TCGGGACTTAGCCCGGATGTAGTC-ACTAGCACAAA
*
105945608 TGCCTTCGGGTATTAGC
63 TGCCTTCGGGTATTAAC
* * * *
105945625 CCGGATATAACAACTTGCACGAATGCCTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAATTGC
1 CCGGATATAACAACTAGCACAAATGCCTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATGC
*
105945690 CTTCGGGTCTTAAC
66 CTTCGGGTATTAAC
** * *
105945704 CCGGATATAATTACTAGCATAAATGTCTTC-GGACTTAGCCCGG
1 CCGGATATAACAACTAGCACAAATG-CCTCGGGACTTAGCCCGG
105945747 GTCATTCAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 14 0.14
79 85 0.83
80 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACTAGCACAAATGCCTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:105953636 original size:40 final size:40
Alignment explanation
Indices: 105953490--105953691 Score: 196
Period size: 40 Copynumber: 5.1 Consensus size: 40
105953480 CGGAATACAA
* *
105953490 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGC
* * *
105953530 CC-GATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
105953569 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * ** *
105953609 CCGGATGTAGTC-ACTAGCACAATTGCCTTATGGTCTTAAC
1 CCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
105953649 CC-GATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
105953688 CCGG
1 CCGG
105953692 GTATCATTCA
Statistics
Matches: 132, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
39 62 0.47
40 69 0.52
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:105953655 original size:79 final size:79
Alignment explanation
Indices: 105953488--105953691 Score: 207
Period size: 79 Copynumber: 2.6 Consensus size: 79
105953478 TTCGGAATAC
* * *
105953488 AACCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGCCC-GATATAACGACTTGCACAA
1 AACCCGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAA
*
105953551 ATGCCTTCGGGTATT
65 ATGCCTTAGGGTATT
* * * *
105953566 AGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACA
1 AACCC-GATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACA
* * *
105953630 ATTGCCTTATGGTCTT
64 AATGCCTTAGGGTATT
** ** * *
105953646 AACCCGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGG
1 AACCCGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGG
105953692 GTATCATTCA
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
78 3 0.03
79 70 0.68
80 29 0.28
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (79 bp):
AACCCGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAA
TGCCTTAGGGTATT
Found at i:105959869 original size:16 final size:16
Alignment explanation
Indices: 105959850--105959883 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
105959840 AACCTAACCC
*
105959850 AAAAAAA-ACAAAGAA
1 AAAAAAAGAAAAAGAA
105959865 AAAAAAAGAAAAAGAA
1 AAAAAAAGAAAAAGAA
105959881 AAA
1 AAA
105959884 CTTACCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAAGAA
Found at i:105959898 original size:16 final size:16
Alignment explanation
Indices: 105959879--105959915 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
105959869 AAAGAAAAAG
*
105959879 AAAAACTTACCCCAAA
1 AAAAACTAACCCCAAA
*
105959895 AAAACCTAACCCCAAA
1 AAAAACTAACCCCAAA
105959911 AAAAA
1 AAAAA
105959916 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.62, C:0.30, G:0.00, T:0.08
Consensus pattern (16 bp):
AAAAACTAACCCCAAA
Found at i:105960739 original size:11 final size:11
Alignment explanation
Indices: 105960721--105960750 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
105960711 GTGTATATTG
105960721 TATATATTATA
1 TATATATTATA
*
105960732 TTTATATTATA
1 TATATATTATA
105960743 TATATATT
1 TATATATT
105960751 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:105963000 original size:12 final size:12
Alignment explanation
Indices: 105962980--105963015 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
105962970 ATTCATTTAA
105962980 CATTCATGCATT
1 CATTCATGCATT
*
105962992 CATTTATGCATT
1 CATTCATGCATT
*
105963004 CATTCATTCATT
1 CATTCATGCATT
105963016 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:105970097 original size:71 final size:69
Alignment explanation
Indices: 105969903--105970166 Score: 323
Period size: 71 Copynumber: 3.7 Consensus size: 69
105969893 GAGTTAAGCC
* *
105969903 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
105969968 GAGGTAT
63 GAGGTAT
* * ** * *
105969975 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
105970039 AGGTAT
64 AGGTAT
*
105970045 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
105970110 AGGTAT
64 AGGTAT
* * ** * *
105970116 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
105970167 TTTAATTTTT
Statistics
Matches: 166, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 59 0.36
72 16 0.10
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:105970211 original size:122 final size:124
Alignment explanation
Indices: 105970045--105970291 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
105970035 GTTGAGGTAT
105970045 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
* *
105970110 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* * *
105970166 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACT
* * * *
105970231 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
105970291 T
1 T
105970292 CAGGTCACGC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 12 0.11
122 59 0.52
123 1 0.01
124 13 0.12
125 28 0.25
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:105970252 original size:263 final size:257
Alignment explanation
Indices: 105969736--105970328 Score: 1033
Period size: 263 Copynumber: 2.3 Consensus size: 257
105969726 TTTCAAGGAA
*
105969736 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
105969801 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTTAGT
105969866 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
105969931 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
105969993 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
105970058 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACACTGAGGTA---TT--T
105970123 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
105970188 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
105970253 TTT
255 TTT
* * * * * *
105970256 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
105970321 GTTTTCAA
64 GTTTTCAA
105970329 TTTACGTTGT
Statistics
Matches: 319, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
257 119 0.37
260 2 0.01
262 4 0.01
263 131 0.41
265 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:105970287 original size:72 final size:71
Alignment explanation
Indices: 105970166--105970606 Score: 297
Period size: 72 Copynumber: 6.1 Consensus size: 71
105970156 GAGTTAAGCC
*
105970166 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
105970230 TGAGGTA
65 TGAGGTA
** * *
105970237 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
105970302 TGAGGTA
65 TGAGGTA
* * ** * * * * ** * *** *
105970309 TTTTCAATTTCTG-TTTT-CAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGGTA
1 TTTTCAATTTTTGTTTTTAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CG-G-GGCA
* * ***
105970368 GGTTGA-ACC
62 CGCTGAGGTA
** * * *
105970377 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTT-TTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
105970441 CTGAGGTA
64 CTGAGGTA
* * ** * *
105970449 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTACTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTTTGTT-T--TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
105970514 GCTGAGGTA
63 GCTGAGGTA
* ** * * **
105970523 TTTTCAATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GGCAC
*
105970588 GCCGAGGTA
63 GCTGAGGTA
105970597 TTTTCAATTT
1 TTTTCAATTT
105970607 CCGTTTTTCA
Statistics
Matches: 269, Mismatches: 79, Indels: 41
0.69 0.20 0.11
Matches are distributed among these distances:
66 5 0.02
67 10 0.04
68 8 0.03
69 13 0.05
70 6 0.02
71 15 0.06
72 109 0.41
73 16 0.06
74 86 0.32
75 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTA
Found at i:105970589 original size:74 final size:74
Alignment explanation
Indices: 105970396--105970607 Score: 250
Period size: 74 Copynumber: 2.9 Consensus size: 74
105970386 CTACTTTTTC
* *
105970396 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
105970461 GTTGTCAAA
66 GTTGTCAAA
* * * *
105970470 AAAATCAACTCATATTACTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
***
105970534 -TATGT-TTT
66 GT-TGTCAAA
** * * *
105970542 AATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
105970607 C
64 C
105970608 CGTTTTTCAA
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
72 34 0.29
73 4 0.03
74 78 0.67
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTGTCAAA
Found at i:105970616 original size:14 final size:14
Alignment explanation
Indices: 105970597--105970631 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
105970587 CGCCGAGGTA
105970597 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
105970611 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
105970625 CTTTCAA
1 TTTTCAA
105970632 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:105970738 original size:74 final size:77
Alignment explanation
Indices: 105970612--105970774 Score: 233
Period size: 74 Copynumber: 2.1 Consensus size: 77
105970602 AATTTCCGTT
* *
105970612 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCTGTCTGTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCA
*
105970676 CACGCTGAGGTAA
65 CACGCCGAGGTAA
* *
105970689 TTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
*
105970752 CACGCCGAGGTAT
65 CACGCCGAGGTAA
105970765 TTTCAATTTC
1 TTTCAATTTC
105970775 CGTTTTTCAA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
74 40 0.51
76 25 0.32
77 13 0.17
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (77 bp):
TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:105970770 original size:76 final size:76
Alignment explanation
Indices: 105970611--105971331 Score: 244
Period size: 77 Copynumber: 9.1 Consensus size: 76
105970601 CAATTTCCGT
* *
105970611 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGTCTGTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA
*
105970676 CACGCTGAGGTA
65 CACGCCGAGGTA
* * *
105970688 ATTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--
105970751 ACACGCCGAGGTA
64 ACACGCCGAGGTA
* * * * * * *
105970764 TTTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATAT-TGCGAGAGGT
1 TTTTCAATTTCTGTCTGTCAA-----------AAAAAATCAACTC-A-T-AT-TGCGAGA--GGC
*
105970825 GAGTTGAGCCTCAGGACACGCTGAGGTA
49 GAGTTGAGCCTCAGGACACGCCGAGGTA
* * * * *
105970853 ATTTCAATTTCTGT-TGTC-AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG--G
*
105970916 ACACGTCGAGGTA
64 ACACGCCGAGGTA
* *** ** * * * *
105970929 TTTTCAATTTCCATTTTTCAATTTCTGCCTTTCAAAAAAAAAAATCA-ACT-C-ATATTGCGAGA
1 TTTTC-A-----A--TTTC--TGTCTG--TCAAAAAAAATCAACTCATATTGCGAGA--G-GCG-
* *
105970991 GGTGAGTTGAGCCTCGGGACACGCTGAGGTA
50 ----AGTTGAGCCTCAGGACACGCCGAGGTA
* * * *** *
105971022 ATTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
**
105971083 ACGTTGAGGTA
66 ACGCCGAGGTA
* * * * * *
105971094 TTTTCAATTTCTGT-TTTC--AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCT
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-A
* *
105971155 CATGCGCTGAGCTA
65 CA--CGCCGAGGTA
* * * *
105971169 TTTTCAATTTCTATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GAT
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA-
*
105971232 CACACACTGAGGTA
65 CACGC-C-GAGGTA
* * * * * * * *
105971246 TTTTTTCAATTTATATTTTTC-AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGG
1 --TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG
* *
105971310 TTACATGTCGAGGTA
64 --ACACGCCGAGGTA
105971325 TTTTCAA
1 TTTTCAA
105971332 AATCTATTTT
Statistics
Matches: 489, Mismatches: 88, Indels: 134
0.69 0.12 0.19
Matches are distributed among these distances:
72 42 0.09
73 34 0.07
74 57 0.12
75 24 0.05
76 55 0.11
77 78 0.16
78 5 0.01
79 63 0.13
80 5 0.01
81 2 0.00
82 3 0.01
83 2 0.00
84 4 0.01
85 4 0.01
86 4 0.01
87 8 0.02
88 5 0.01
89 37 0.08
90 12 0.02
91 17 0.03
92 1 0.00
93 15 0.03
95 12 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
ACGCCGAGGTA
Found at i:105970771 original size:167 final size:165
Alignment explanation
Indices: 105970450--105971110 Score: 935
Period size: 165 Copynumber: 4.0 Consensus size: 165
105970440 GCTGAGGTAA
* * * *
105970450 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTACTAGAGGTGAGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *** *
105970513 CGCTGAGGTATTTTCAATTT-T-TATGT-TTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAG
65 CGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
105970575 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
129 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
105970612 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
105970677 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAG
64 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
105970742 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
129 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
105970779 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
105970844 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCC
66 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
* * *
105970909 TCAGATCACACGTCGAGGTATTTTCAATTTCCATT
131 TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
105970944 TTTCAATTTCTGCCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 TTTCAATTTCTGCCTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * ***
105971009 ACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTG
62 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTG
* ** *
105971072 AGCCTCAAG--ACACGTTGAGGTATTTTCAATTTCTGTT
127 AGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
105971109 TT
1 TT
105971111 CAAAAAATCA
Statistics
Matches: 457, Mismatches: 31, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
162 12 0.03
163 2 0.00
164 2 0.00
165 246 0.54
166 4 0.01
167 119 0.26
169 72 0.16
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (165 bp):
TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
Found at i:105970901 original size:74 final size:76
Alignment explanation
Indices: 105970795--105970939 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
105970785 TTTTTGCCTT
*
105970795 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
105970857 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
105970869 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
105970934 AATTTC
66 AATTTC
105970940 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:105971072 original size:332 final size:314
Alignment explanation
Indices: 105970396--105971268 Score: 1006
Period size: 332 Copynumber: 2.7 Consensus size: 314
105970386 CTACTTTTTC
* *** * * *
105970396 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTCT
* * * *
105970461 G-TTGTCAAAAAAATCAACTCATATTACTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
66 GCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
*** ** * *
105970525 TTCAATTT-TTATGT-TTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
130 TTCAATTTCTTATGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
* * *
105970588 GCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGC
195 GACGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGC
105970653 GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
260 GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC-AA
* *** *
105970709 AAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAG--ACACGCCGAGGTATTTTCAA---
105970774 CCGTTTTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
61 -----TTTC------TG-CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
105970839 GACACGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGT
114 GACACGCTGAGGTATTTTCAATTTCT-TATGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGT
*
105970903 TGAGCCTCAGATCACACGTCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTCAAAAAA
178 TGAGCCTCAGATCACACGACGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTC--AAAA
*
105970968 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
241 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
105971033 TGTTTTC-A
306 TGTTGTCAA
* * **
105971041 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTCT
* * * * * *
105971106 GTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCATGCGCTGAGCTA
66 GCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA--CGCTGAGGTA
* * * *
105971169 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
128 TTTTCAATTTCT-TATGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCA
**
105971234 CAC-ACTGAGGTATTTTTTCAATTTATATTTTTCAA
192 CACGAC-GAGGTA--TTTTCAATTTCCATTTTTCAA
105971269 AAAAATCAAC
Statistics
Matches: 483, Mismatches: 47, Indels: 54
0.83 0.08 0.09
Matches are distributed among these distances:
313 38 0.08
314 38 0.08
315 22 0.05
316 24 0.05
317 55 0.11
319 19 0.04
322 4 0.01
323 4 0.01
329 2 0.00
330 81 0.17
331 6 0.01
332 116 0.24
334 74 0.15
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (314 bp):
AAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTCT
GCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
TCAATTTCTTATGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
ACGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAA
Found at i:105971084 original size:72 final size:73
Alignment explanation
Indices: 105970967--105971306 Score: 378
Period size: 72 Copynumber: 4.5 Consensus size: 73
105970957 CTTTCAAAAA
** *
105970967 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
105971032 CTGTTTTC
66 CTGTTTTC
* ** *
105971040 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
105971104 CTGTTTTC
66 CTGTTTTC
* * ** * *
105971112 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACA--CGCTGAGGTATTTTCAA
*
105971176 TTTCTATCTTTC
63 TTTCTGT-TTTC
* * *
105971188 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-GACACGCTGAGGTA--TTTTC
* *
105971253 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* *
105971267 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
105971307 GGGTTACATG
Statistics
Matches: 223, Mismatches: 32, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
72 66 0.30
73 34 0.15
75 21 0.09
76 4 0.02
77 43 0.19
79 54 0.24
80 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:105971271 original size:79 final size:76
Alignment explanation
Indices: 105970966--105971682 Score: 434
Period size: 88 Copynumber: 9.0 Consensus size: 76
105970956 CCTTTCAAAA
** *
105970966 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
105971029 TTTCTGTTTTC
66 TTTCTGTTTTC
* ** * *
105971040 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
105971101 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
105971112 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
105971176 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
105971188 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
105971253 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
105971267 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
** *
105971331 AAATCTATTTTTC
65 ATTTCT-GTTTTC
* ** * **
105971344 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
105971409 GCTATTTTCAATTTCTGTTTTTTTTC
55 GGTATTTTCAATTTCTG----TTTTC
* * * * * *
105971435 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
105971499 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
105971522 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
105971583 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
105971597 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
105971662 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
105971683 TAATGTCTGT
Statistics
Matches: 505, Mismatches: 82, Indels: 99
0.74 0.12 0.14
Matches are distributed among these distances:
72 65 0.13
73 32 0.06
75 36 0.07
76 5 0.01
77 65 0.13
78 7 0.01
79 64 0.13
80 7 0.01
81 31 0.06
82 1 0.00
83 3 0.01
84 31 0.06
85 6 0.01
87 17 0.03
88 114 0.23
89 3 0.01
90 13 0.03
91 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:105971490 original size:30 final size:30
Alignment explanation
Indices: 105971454--105971515 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
105971444 CAACTCATAT
105971454 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
105971484 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
105971514 TG
1 TG
105971516 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:105971616 original size:253 final size:247
Alignment explanation
Indices: 105971106--105971683 Score: 758
Period size: 253 Copynumber: 2.3 Consensus size: 247
105971096 TTCAATTTCT
* * *
105971106 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
105971171 TTCAATTTC---TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
66 TTCAATTTCTGTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
* *
105971233 ACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAG
131 ACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAG
* ** * * * **
105971298 TTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTATTTTTCAAATTCT
195 TTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
* *
105971351 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
105971415 TTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-
66 TTCAATTTCTGTTTTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAG
* * * * * * *
105971479 ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCG
128 A--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCG
* *
105971542 AGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 AGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
105971604 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
105971668 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
105971684 AATGTCTGTT
Statistics
Matches: 290, Mismatches: 29, Indels: 20
0.86 0.09 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
247 13 0.04
248 30 0.10
249 1 0.00
250 3 0.01
251 2 0.01
252 5 0.02
253 145 0.50
254 5 0.02
255 13 0.04
256 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (247 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
ACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGT
TGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
Found at i:105972346 original size:16 final size:16
Alignment explanation
Indices: 105972327--105972362 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
105972317 AACCTAACCC
*
105972327 AAAAAAAAA-ACAAAG
1 AAAAAAAAAGAAAAAG
105972342 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
105972358 AAAAA
1 AAAAA
105972363 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:105972377 original size:16 final size:17
Alignment explanation
Indices: 105972358--105972395 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
105972348 AAAGAAAAAG
*
105972358 AAAAACTTA-CCCCAAA
1 AAAAACTAACCCCCAAA
*
105972374 AAAACCTAACCCCCAAA
1 AAAAACTAACCCCCAAA
105972391 AAAAA
1 AAAAA
105972396 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAACTAACCCCCAAA
Found at i:105973220 original size:11 final size:11
Alignment explanation
Indices: 105973202--105973231 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
105973192 GTGTATATTG
105973202 TATATATTATA
1 TATATATTATA
*
105973213 TTTATATTATA
1 TATATATTATA
105973224 TATATATT
1 TATATATT
105973232 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:105974974 original size:17 final size:17
Alignment explanation
Indices: 105974952--105975014 Score: 83
Period size: 17 Copynumber: 3.7 Consensus size: 17
105974942 TTTACTAGAC
105974952 CTAAATAAATAATTTTG
1 CTAAATAAATAATTTTG
105974969 CTAAATAAATAATTTTG
1 CTAAATAAATAATTTTG
** *
105974986 CTAACATGTAT-TTTTTG
1 CTAA-ATAAATAATTTTG
105975003 CTAAATAAATAA
1 CTAAATAAATAA
105975015 ATAATTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
16 4 0.11
17 30 0.79
18 4 0.11
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.41
Consensus pattern (17 bp):
CTAAATAAATAATTTTG
Found at i:105976689 original size:17 final size:19
Alignment explanation
Indices: 105976653--105976696 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 19
105976643 TGAACGTTCT
105976653 TATTT-ATAACACAAATCA
1 TATTTAATAACACAAATCA
105976671 TATTTAATAACA-AAA-CA
1 TATTTAATAACACAAATCA
*
105976688 TATCTAATA
1 TATTTAATA
105976697 CCTATTCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 10 0.42
18 8 0.33
19 6 0.25
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (19 bp):
TATTTAATAACACAAATCA
Found at i:105979136 original size:26 final size:27
Alignment explanation
Indices: 105979107--105979170 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
105979097 CAAAATTAAC
*
105979107 CCTAGGGGTATAACGGTCATTTT-ACA
1 CCTAGGGGTATAACGGTAATTTTCACA
* * *
105979133 CCTAGGGGTAAAATGGTAATTTTCATA
1 CCTAGGGGTATAACGGTAATTTTCACA
*
105979160 CTTAGGGGTAT
1 CCTAGGGGTAT
105979171 TTTAGTAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (27 bp):
CCTAGGGGTATAACGGTAATTTTCACA
Found at i:105982172 original size:29 final size:29
Alignment explanation
Indices: 105982139--105982194 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
105982129 TAAATACACA
*
105982139 CAATTCATT-TATTTTTCATTTTAGTCCCT
1 CAATTCATTAT-TTTTTCAATTTAGTCCCT
*
105982168 CAATTTATTATTTTTTCAATTTAGTCC
1 CAATTCATTATTTTTTCAATTTAGTCC
105982195 TAATTACTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.23, C:0.18, G:0.04, T:0.55
Consensus pattern (29 bp):
CAATTCATTATTTTTTCAATTTAGTCCCT
Found at i:105989525 original size:15 final size:15
Alignment explanation
Indices: 105989505--105989534 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
105989495 TAGAAAATCA
105989505 CATACCTTAGGATTG
1 CATACCTTAGGATTG
105989520 CATACCTTAGGATTG
1 CATACCTTAGGATTG
105989535 TTGCTTCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (15 bp):
CATACCTTAGGATTG
Found at i:105996373 original size:26 final size:27
Alignment explanation
Indices: 105996323--105996374 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
105996313 GGATAGGTAT
*
105996323 ATAATATAATATGAAAAATGTATATAC
1 ATAATATAATATGAAAAACGTATATAC
105996350 ATAATAT-ATATG-AAAACGTAATATA
1 ATAATATAATATGAAAAACGT-ATATA
105996375 GTATTAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 6 0.26
26 10 0.43
27 7 0.30
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.33
Consensus pattern (27 bp):
ATAATATAATATGAAAAACGTATATAC
Found at i:105997547 original size:24 final size:25
Alignment explanation
Indices: 105997509--105997563 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
105997499 AAAAATATTA
105997509 GAAAATATATGTACATAATATAATAT
1 GAAAATATA-GTACATAATATAATAT
105997535 GAAAATATA-TACATAATATAATAT
1 GAAAATATAGTACATAATATAATAT
*
105997559 TAAAA
1 GAAAA
105997564 CATAATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 19 0.68
26 9 0.32
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (25 bp):
GAAAATATAGTACATAATATAATAT
Found at i:105997573 original size:21 final size:22
Alignment explanation
Indices: 105997520--105997584 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 22
105997510 AAAATATATG
* *
105997520 TACATAATATAATATGAAAATATA
1 TACATAATATAATAT-TAAA-ACA
105997544 TACATAATATAATATTAAAACA
1 TACATAATATAATATTAAAACA
* *
105997566 TA-ATAATACAACATTAAAA
1 TACATAATATAATATTAAAA
105997585 ATATATATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 15 0.41
22 4 0.11
23 3 0.08
24 15 0.41
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATATAATATTAAAACA
Found at i:105997599 original size:9 final size:9
Alignment explanation
Indices: 105997584--105997651 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
105997574 CAACATTAAA
105997584 AATATATAT
1 AATATATAT
*
105997593 GATATATAT
1 AATATATAT
105997602 -A-ATATAT
1 AATATATAT
*
105997609 AATAT-TAA
1 AATATATAT
105997617 AAGTATATAT
1 AA-TATATAT
* *
105997627 AACATATAAA
1 AATATAT-AT
105997637 AATATATAT
1 AATATATAT
105997646 AATATA
1 AATATA
105997652 ATACCTAAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
7 6 0.13
8 6 0.13
9 24 0.51
10 11 0.23
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.38
Consensus pattern (9 bp):
AATATATAT
Found at i:105997624 original size:34 final size:35
Alignment explanation
Indices: 105997578--105997644 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
105997568 ATAATACAAC
* * *
105997578 ATTAAAAATATATATGATATAT-ATAATATATAAT
1 ATTAAAAATATATATAACATATAAAAATATATAAT
*
105997612 ATTAAAAGTATATATAACATATAAAAATATATA
1 ATTAAAAATATATATAACATATAAAAATATATA
105997645 TAATATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 19 0.68
35 9 0.32
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.37
Consensus pattern (35 bp):
ATTAAAAATATATATAACATATAAAAATATATAAT
Found at i:105997637 original size:53 final size:57
Alignment explanation
Indices: 105997525--105997655 Score: 157
Period size: 53 Copynumber: 2.4 Consensus size: 57
105997515 ATATGTACAT
*
105997525 AATATAATATGAAAATATATACATAATATAATATTAAAACATAATAATACAACATTAAA
1 AATAT-ATATG-ATATATATACATAATATAATATTAAAACATAATAATACAACATTAAA
* *
105997584 AATATATATGATATATATA-AT-ATATAATATTAAAA-GT-AT-ATATAACATATAAA
1 AATATATATGATATATATACATAATATAATATTAAAACATAATAATACAACAT-TAAA
*
105997637 AATATATATAATATA-ATAC
1 AATATATATGATATATATAC
105997656 CTAAGATAGT
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
52 11 0.17
53 20 0.30
54 1 0.02
55 14 0.21
56 2 0.03
57 8 0.12
58 5 0.08
59 5 0.08
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (57 bp):
AATATATATGATATATATACATAATATAATATTAAAACATAATAATACAACATTAAA
Found at i:105997692 original size:20 final size:22
Alignment explanation
Indices: 105997667--105997714 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
105997657 TAAGATAGTA
* *
105997667 AAAATATA-AC-TAGTAATGTT
1 AAAATATATACATAATAATATT
105997687 AAAATATATACATAATAATATT
1 AAAATATATACATAATAATATT
105997709 AAAATA
1 AAAATA
105997715 AAATAATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.33
21 2 0.08
22 14 0.58
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (22 bp):
AAAATATATACATAATAATATT
Found at i:105997705 original size:22 final size:20
Alignment explanation
Indices: 105997667--105997723 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
105997657 TAAGATAGTA
* *
105997667 AAAATATAACTAGTAATGTT
1 AAAATATAACTAATAATATT
105997687 AAAATATATACATAATAATATT
1 AAAATATA-AC-TAATAATATT
*
105997709 AAAATA-AAATAATAA
1 AAAATATAACTAATAA
105997724 GTGATAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 6 0.19
20 9 0.28
21 3 0.09
22 14 0.44
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (20 bp):
AAAATATAACTAATAATATT
Found at i:105998074 original size:16 final size:16
Alignment explanation
Indices: 105998055--105998107 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
105998045 ATATAATAAG
* *
105998055 ATATACGAATAATATA
1 ATATATGAAAAATATA
* *
105998071 ATATATAAAAACACATA
1 ATATATGAAAA-ATATA
105998088 ATATATGAAAAATATA
1 ATATATGAAAAATATA
105998104 ATAT
1 ATAT
105998108 TTTAAAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 16 0.53
17 14 0.47
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (16 bp):
ATATATGAAAAATATA
Found at i:105998115 original size:17 final size:16
Alignment explanation
Indices: 105998065--105998118 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
105998055 ATATACGAAT
105998065 AATATAATATATAAAA
1 AATATAATATATAAAA
* *
105998081 ACACATAATATATGAAA
1 A-ATATAATATATAAAA
*
105998098 AATATAATATTTTAAAA
1 AATATAATA-TATAAAA
105998115 AATA
1 AATA
105998119 CCTAATATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 8 0.26
17 23 0.74
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (16 bp):
AATATAATATATAAAA
Found at i:105998412 original size:25 final size:25
Alignment explanation
Indices: 105998384--105998431 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
105998374 ATGATATAAT
*
105998384 AATAATAATAA-TAATATAATATTAG
1 AATAA-AATAATTAAAATAATATTAG
*
105998409 AATAAAGTAATTAAAATAATATT
1 AATAAAATAATTAAAATAATATT
105998432 GTATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
AATAAAATAATTAAAATAATATTAG
Found at i:106000677 original size:54 final size:54
Alignment explanation
Indices: 106000598--106000726 Score: 208
Period size: 54 Copynumber: 2.4 Consensus size: 54
106000588 GAAAAGTAGA
*
106000598 TTTTGAAAAATAGACATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 TTTTGAAAAATAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
**
106000652 TTTTGAAAAATAGAAATTAAAAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 TTTTGAAAAATAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
106000706 TTTTGAAAACAT-G-AATTAAAA
1 TTTTGAAAA-ATAGAAATTAAAA
106000727 CAGAAATTGG
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
53 8 0.11
54 61 0.86
55 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (54 bp):
TTTTGAAAAATAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
Found at i:106000813 original size:14 final size:14
Alignment explanation
Indices: 106000794--106000827 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
106000784 GTTGATTTTT
*
106000794 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
106000808 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
106000822 TTGAAA
1 TTGAAA
106000828 TTACTTTAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.06, G:0.18, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:106000852 original size:89 final size:86
Alignment explanation
Indices: 106000672--106000899 Score: 281
Period size: 89 Copynumber: 2.7 Consensus size: 86
106000662 TAGAAATTAA
**
106000672 AAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTGAAAACATGAATTAAAACAGAAATT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATGAATTAAAACAGAAATT
106000735 GGAAATACCTTAGCATAGACC
66 GGAAATACCTTAGCATAGACC
106000756 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCA-GAAATTGAAAAACAGA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CATG-AATT--AAAACAGA
* * *
106000820 AATT-GAAATTACTTTAGCGT-GCCC
62 AATTGGAAA-TACCTTAGCATAGACC
* *
106000844 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAATGGAATTAAA
1 -AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAT-GAATTAAA
106000900 CATCAAAATA
Statistics
Matches: 127, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
84 31 0.24
85 3 0.02
86 12 0.09
87 20 0.16
88 8 0.06
89 53 0.42
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (86 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATGAATTAAAACAGAAATT
GGAAATACCTTAGCATAGACC
Found at i:106011116 original size:20 final size:19
Alignment explanation
Indices: 106011091--106011132 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
106011081 CTTTTCTATC
106011091 CTTCTCTTATCTCTTCCCCT
1 CTTCTCTTATCT-TTCCCCT
* *
106011111 CTTCTCTTTTCTTTCTCCT
1 CTTCTCTTATCTTTCCCCT
106011130 CTT
1 CTT
106011133 AATTCTCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.02, C:0.40, G:0.00, T:0.57
Consensus pattern (19 bp):
CTTCTCTTATCTTTCCCCT
Found at i:106011269 original size:26 final size:26
Alignment explanation
Indices: 106011240--106011293 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
106011230 AAGCCAAACC
106011240 TCGTATCTTTTCTTTCAAAACCGAAA
1 TCGTATCTTTTCTTTCAAAACCGAAA
106011266 TCGTATCTTTTCTTTCAAAACCGAAA
1 TCGTATCTTTTCTTTCAAAACCGAAA
106011292 TC
1 TC
106011294 TTACTACTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (26 bp):
TCGTATCTTTTCTTTCAAAACCGAAA
Found at i:106012456 original size:19 final size:19
Alignment explanation
Indices: 106012434--106012478 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
106012424 CTGTTTTATT
106012434 ATGGGCCAACTGTATTAAA
1 ATGGGCCAACTGTATTAAA
* * *
106012453 ATGGACCCAACTGTGTTAAT
1 ATGG-GCCAACTGTATTAAA
106012473 ATGGGC
1 ATGGGC
106012479 AAGACCCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (19 bp):
ATGGGCCAACTGTATTAAA
Found at i:106012464 original size:20 final size:20
Alignment explanation
Indices: 106012439--106012476 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
106012429 TTATTATGGG
106012439 CCAACTGTATTAAAATGGAC
1 CCAACTGTATTAAAATGGAC
* *
106012459 CCAACTGTGTTAATATGG
1 CCAACTGTATTAAAATGG
106012477 GCAAGACCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (20 bp):
CCAACTGTATTAAAATGGAC
Found at i:106012608 original size:28 final size:28
Alignment explanation
Indices: 106012507--106012620 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
106012497 ACTTGTAATA
* * *
106012507 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
106012535 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
106012567 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
106012596 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
106012621 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:106012641 original size:62 final size:61
Alignment explanation
Indices: 106012499--106012643 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
106012489 ATATCTCGAC
* * *
106012499 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* *
106012560 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
106012621 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
106012644 TAAAGCTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 42 0.57
62 30 0.41
63 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:106015814 original size:26 final size:27
Alignment explanation
Indices: 106015764--106015815 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
106015754 GGATAGGTAT
*
106015764 ATAATATAATATGAAAAATGTATATAC
1 ATAATATAATATGAAAAACGTATATAC
106015791 ATAATAT-ATATG-AAAACGTAATATA
1 ATAATATAATATGAAAAACGT-ATATA
106015816 GTATTAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 6 0.26
26 10 0.43
27 7 0.30
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.33
Consensus pattern (27 bp):
ATAATATAATATGAAAAACGTATATAC
Found at i:106016313 original size:15 final size:15
Alignment explanation
Indices: 106016293--106016321 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
106016283 AGACATAATA
106016293 ATACTAAATATATAC
1 ATACTAAATATATAC
106016308 ATACTAAATATATA
1 ATACTAAATATATA
106016322 TATGCATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACTAAATATATAC
Found at i:106017029 original size:24 final size:24
Alignment explanation
Indices: 106016972--106017088 Score: 89
Period size: 24 Copynumber: 4.8 Consensus size: 24
106016962 ACATGATAAT
* * *
106016972 ATATATATATAAAATATTA-GAAA
1 ATATATACATAATATAATATGAAA
106016995 ATATATGTACATAATATAATATGAAA
1 ATATA--TACATAATATAATATGAAA
*
106017021 ATATATACATAATATAATAT-TAA
1 ATATATACATAATATAATATGAAA
* * *
106017044 A-ACATA-ATAATATAACATTAAAA
1 ATATATACATAATATAATA-TGAAA
*
106017067 ATATATATGATATATATAATAT
1 ATATATA-CATA-ATATAATAT
106017089 ATAATATTAA
Statistics
Matches: 76, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
21 10 0.13
22 5 0.07
23 11 0.14
24 19 0.25
25 11 0.14
26 13 0.17
27 7 0.09
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAATATGAAA
Done.