Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 339 of 438
Found at i:106017055 original size:21 final size:22
Alignment explanation
Indices: 106017002--106017066 Score: 78
Period size: 21 Copynumber: 2.9 Consensus size: 22
106016992 AAAATATATG
* *
106017002 TACATAATATAATATGAAAATATA
1 TACATAATATAATAT-TAAA-ACA
106017026 TACATAATATAATATTAAAACA
1 TACATAATATAATATTAAAACA
*
106017048 TA-ATAATATAACATTAAAA
1 TACATAATATAATATTAAAA
106017067 ATATATATGA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 16 0.42
22 4 0.11
23 3 0.08
24 15 0.39
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (22 bp):
TACATAATATAATATTAAAACA
Found at i:106017081 original size:9 final size:9
Alignment explanation
Indices: 106017066--106017132 Score: 68
Period size: 9 Copynumber: 7.7 Consensus size: 9
106017056 TAACATTAAA
106017066 AATATATAT
1 AATATATAT
*
106017075 GATATATAT
1 AATATATAT
106017084 -A-ATATAT
1 AATATATAT
*
106017091 AATAT-TAA
1 AATATATAT
106017099 AAGTATATAT
1 AA-TATATAT
* *
106017109 AACATATAA
1 AATATATAT
106017118 AATATATAT
1 AATATATAT
106017127 AATATA
1 AATATA
106017133 ATACCTAAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.13
8 6 0.13
9 31 0.66
10 4 0.09
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (9 bp):
AATATATAT
Found at i:106017087 original size:18 final size:18
Alignment explanation
Indices: 106016931--106017132 Score: 84
Period size: 16 Copynumber: 10.9 Consensus size: 18
106016921 ATAGTATACA
106016931 AAAATATATAACTAATAATAT
1 AAAATATAT-A-TAAT-ATAT
*
106016952 CAAAATATATA-CATGATAAT
1 -AAAATATATATAAT-AT-AT
* * *
106016972 ATATATATATAAAATATTAG
1 A-AAATATATATAATA-TAT
*
106016992 AAAATATATGTACATA-AT
1 AAAATATATATA-ATATAT
*
106017010 ATAATATGA-A-AATATAT
1 AAAATAT-ATATAATATAT
*
106017027 -ACATA-ATATAATAT-T
1 AAAATATATATAATATAT
*
106017042 AAAACATA-ATAATATAACATT
1 AAAATATATATAATAT---A-T
*
106017063 AAAAATATATATGATATAT
1 -AAAATATATATAATATAT
*
106017082 -ATA-ATATATAATAT-T
1 AAAATATATATAATATAT
*
106017097 AAAAGTATATATAACATAT
1 AAAA-TATATATAATATAT
106017116 AAAATATATATAATATA
1 AAAATATATATAATATA
106017133 ATACCTAAGA
Statistics
Matches: 136, Mismatches: 22, Indels: 48
0.66 0.11 0.23
Matches are distributed among these distances:
14 1 0.01
15 3 0.02
16 33 0.24
17 6 0.04
18 29 0.21
19 20 0.15
20 17 0.12
21 5 0.04
22 16 0.12
23 6 0.04
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (18 bp):
AAAATATATATAATATAT
Found at i:106017098 original size:34 final size:34
Alignment explanation
Indices: 106016934--106017125 Score: 129
Period size: 34 Copynumber: 5.4 Consensus size: 34
106016924 GTATACAAAA
* * *
106016934 ATATATAACTA-ATAATATCAAAATATATACATGATA
1 ATATATAA-TATATAATATTAAAA-ATATATATGA-C
* *
106016970 ATATATATATATAAAATATTAGAAA-ATATATGTAC
1 ATATATA-ATATATAATATTAAAAATATATATG-AC
* * *
106017005 ATAATATAATATGAAAATATATACATAATATAATATTA-
1 AT-ATATAATAT-ATAATAT-TA-AAAATAT-ATATGAC
* * * *
106017043 AAACATAATAATATAACATTAAAAATATATATGAT
1 ATATATAAT-ATATAATATTAAAAATATATATGAC
* *
106017078 ATATATAATATATAATATTAAAAGTATATATAAC
1 ATATATAATATATAATATTAAAAATATATATGAC
*
106017112 ATATAAAATATATA
1 ATATATAATATATA
106017126 TAATATAATA
Statistics
Matches: 124, Mismatches: 21, Indels: 24
0.73 0.12 0.14
Matches are distributed among these distances:
34 39 0.31
35 25 0.20
36 25 0.20
37 23 0.19
38 5 0.04
39 3 0.02
40 4 0.03
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.35
Consensus pattern (34 bp):
ATATATAATATATAATATTAAAAATATATATGAC
Found at i:106017173 original size:20 final size:22
Alignment explanation
Indices: 106017148--106017195 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
106017138 TAAGATAGTA
* *
106017148 AAAATATA-AC-TAGTAATGTT
1 AAAATATATACATAATAATATT
106017168 AAAATATATACATAATAATATT
1 AAAATATATACATAATAATATT
106017190 AAAATA
1 AAAATA
106017196 AAATAATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.33
21 2 0.08
22 14 0.58
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (22 bp):
AAAATATATACATAATAATATT
Found at i:106017186 original size:22 final size:20
Alignment explanation
Indices: 106017148--106017204 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
106017138 TAAGATAGTA
* *
106017148 AAAATATAACTAGTAATGTT
1 AAAATATAACTAATAATATT
106017168 AAAATATATACATAATAATATT
1 AAAATATA-AC-TAATAATATT
*
106017190 AAAATA-AAATAATAA
1 AAAATATAACTAATAA
106017205 GTGATAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 6 0.19
20 9 0.28
21 3 0.09
22 14 0.44
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (20 bp):
AAAATATAACTAATAATATT
Found at i:106018287 original size:20 final size:20
Alignment explanation
Indices: 106018262--106018307 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
106018252 ATTGGGTCTT
106018262 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
106018282 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
106018301 GCCCATA
1 GCCCATA
106018308 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:106018316 original size:19 final size:20
Alignment explanation
Indices: 106018274--106018317 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
106018264 CCATATTAAC
** *
106018274 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
106018294 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
106018313 ACAGT
1 ACAGT
106018318 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:106023078 original size:20 final size:20
Alignment explanation
Indices: 106023053--106023098 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
106023043 ATTGGGTCTT
106023053 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
106023073 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
106023092 GCCCATA
1 GCCCATA
106023099 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:106023107 original size:19 final size:20
Alignment explanation
Indices: 106023065--106023108 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
106023055 CCATATTAAC
** *
106023065 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
106023085 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
106023104 ACAGT
1 ACAGT
106023109 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:106026090 original size:43 final size:39
Alignment explanation
Indices: 106025989--106026093 Score: 99
Period size: 43 Copynumber: 2.6 Consensus size: 39
106025979 TAGTGAAAGA
* *
106025989 AATATAT-ATAACTAATAACATTAAAAATATACATAATAT
1 AATATATAAAAACTAATAATA-TAAAAATATACATAATAT
*
106026028 ACATATTTAAAAA--ACATAATATAATAAGATATACGAATAATAT
1 A-ATATATAAAAACTA-ATAATATAA-AA-ATATAC--ATAATAT
106026071 AATATATAAAAACTAATAATATA
1 AATATATAAAAACTAATAATATA
106026094 TGAAAAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
39 5 0.09
40 12 0.23
41 9 0.17
42 10 0.19
43 16 0.30
44 1 0.02
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (39 bp):
AATATATAAAAACTAATAATATAAAAATATACATAATAT
Found at i:106026091 original size:17 final size:16
Alignment explanation
Indices: 106026056--106026108 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
106026046 ATATAATAAG
* *
106026056 ATATACGAATAATATA
1 ATATATGAAAAATATA
106026072 ATATAT-AAAAACTAATA
1 ATATATGAAAAA-T-ATA
106026089 ATATATGAAAAATATA
1 ATATATGAAAAATATA
106026105 ATAT
1 ATAT
106026109 TTTAAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 4 0.12
16 13 0.41
17 10 0.31
18 5 0.16
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (16 bp):
ATATATGAAAAATATA
Found at i:106026116 original size:17 final size:16
Alignment explanation
Indices: 106026066--106026119 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
106026056 ATATACGAAT
106026066 AATATAATATATAAAA
1 AATATAATATATAAAA
* *
106026082 ACTAATAATATATGAAA
1 AAT-ATAATATATAAAA
*
106026099 AATATAATATTTTAAAA
1 AATATAATA-TATAAAA
106026116 AATA
1 AATA
106026120 CCTAATATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 8 0.26
17 23 0.74
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (16 bp):
AATATAATATATAAAA
Found at i:106026126 original size:35 final size:33
Alignment explanation
Indices: 106026056--106026128 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
106026046 ATATAATAAG
* *
106026056 ATATACGAATAATATAATATATAAAAACTAATA
1 ATATACGAAAAATATAATATATAAAAAATAATA
* * *
106026089 ATATATGAAAAATATAATATTTTAAAAAATACCTA
1 ATATACGAAAAATATAATA-TATAAAAAATA-ATA
106026124 ATATA
1 ATATA
106026129 AGAGTGTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
33 17 0.52
34 9 0.27
35 7 0.21
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (33 bp):
ATATACGAAAAATATAATATATAAAAAATAATA
Found at i:106026384 original size:3 final size:3
Alignment explanation
Indices: 106026376--106026411 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
106026366 TAAATATGAT
106026376 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
106026412 TTAGAATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:106026498 original size:23 final size:25
Alignment explanation
Indices: 106026448--106026504 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 25
106026438 AATAATATTG
106026448 TATATAA-AAATATATATACATACA
1 TATATAATAAATATATATACATACA
106026472 TATATAATAAA-A-ATATACACTAC-
1 TATATAATAAATATATATACA-TACA
106026495 TATATAATAA
1 TATATAATAA
106026505 TAATGATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 17 0.55
24 11 0.35
25 3 0.10
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (25 bp):
TATATAATAAATATATATACATACA
Found at i:106026686 original size:27 final size:26
Alignment explanation
Indices: 106026634--106026686 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
106026624 TGTATAATAG
*
106026634 TAATAATAATAATATAGAAATTATAAT
1 TAATAATAATAATACAGAAA-TATAAT
106026661 TAATAATAATAAATAACAGAAA-ATAA
1 TAATAATAAT-AAT-ACAGAAATATAA
106026687 AAACAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 14 0.61
28 3 0.13
29 6 0.26
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (26 bp):
TAATAATAATAATACAGAAATATAAT
Found at i:106028605 original size:292 final size:289
Alignment explanation
Indices: 106028023--106028607 Score: 1008
Period size: 292 Copynumber: 2.0 Consensus size: 289
106028013 ATACTTCTAG
*
106028023 ATGTTCACTATCTCATTTTCTTCAGCTCAAATGAGACAAAGCAAATTAGCATTTTTCCCTTACGC
1 ATGTTCACTATCTCATTTTCTTCAGCTCAAATAAGACAAAGCAAATTAGCATTTTTCCCTTACGC
*
106028088 AAAAGTTCCATTGAAACTCAATTATCTCCCCTGATATGTTCTTGCGTCTTTGCAACACTGACATA
66 AAAAGTTCCATTGAAACTCAAATATCTCCCCTGATATGTTCTTGCGTCTTTGCAACACTGACATA
*
106028153 TATGGGTTACATTAGGTGTTGGTTGCCTCTGTAGTCACCTTCCACGCATTGCAGTCTCTCAAAGT
131 TATGGGTTACATTAGGTGTTGGTTGCCTCTGTAGTCACCTTCCACGCATTGCAATCTCTCAAAGT
* * *
106028218 CCCCGGTTTCAGGTTAGCATTCCAAGTACAATGTGTTTGATGAAATTTGTGATTCACAGTCGAGC
196 CCCCGGTTTCAGGTTAGCATACCAAGTACAATGTGTTTGATGAAATTTGCGATTCAAAGTCGAGC
* *
106028283 TTTTATTCAATATATATTGATATGGGAAT
261 TTTTATTCAATATAGATTGATATAGGAAT
*
106028312 ATGTTCACTATCTCATTTTCTTCAGCTCAAATAAGACAAAGCAAATTAGCATTTTTCCTTTACGC
1 ATGTTCACTATCTCATTTTCTTCAGCTCAAATAAGACAAAGCAAATTAGCATTTTTCCCTTACGC
* *
106028377 AAAAGTTCCATTGAAACTCAAATATCTCCCCTGATATGTTCTTGCGTCTTTGTAACATTGACATA
66 AAAAGTTCCATTGAAACTCAAATATCTCCCCTGATATGTTCTTGCGTCTTTGCAACACTGACATA
*
106028442 TATGGGTTACAACATTAGGTGTTGGTTGCCTTTGTAGTCACCTTCCACGCATTGCAATCTCTCAA
131 TATGGGTT---ACATTAGGTGTTGGTTGCCTCTGTAGTCACCTTCCACGCATTGCAATCTCTCAA
* *
106028507 AGTCCCCGGTTTCTGGTTAGCATACCAAGTACATTGTGTTTGATGAAATTTGCGATTCAAAGTCG
193 AGTCCCCGGTTTCAGGTTAGCATACCAAGTACAATGTGTTTGATGAAATTTGCGATTCAAAGTCG
*
106028572 AGTTTTTATTCAATATAGATTGATATAGGAAT
258 AGCTTTTATTCAATATAGATTGATATAGGAAT
106028604 ATGT
1 ATGT
106028608 GGTTTCACCT
Statistics
Matches: 278, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
289 133 0.48
292 145 0.52
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (289 bp):
ATGTTCACTATCTCATTTTCTTCAGCTCAAATAAGACAAAGCAAATTAGCATTTTTCCCTTACGC
AAAAGTTCCATTGAAACTCAAATATCTCCCCTGATATGTTCTTGCGTCTTTGCAACACTGACATA
TATGGGTTACATTAGGTGTTGGTTGCCTCTGTAGTCACCTTCCACGCATTGCAATCTCTCAAAGT
CCCCGGTTTCAGGTTAGCATACCAAGTACAATGTGTTTGATGAAATTTGCGATTCAAAGTCGAGC
TTTTATTCAATATAGATTGATATAGGAAT
Found at i:106030410 original size:20 final size:20
Alignment explanation
Indices: 106030387--106030427 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
106030377 ATGTTTAATA
*
106030387 TGGGAGTGGTTTGTTTGATG
1 TGGGAGTGGTTTGGTTGATG
106030407 TGGGAGTGGTTTGGTTGATG
1 TGGGAGTGGTTTGGTTGATG
106030427 T
1 T
106030428 TTAGGCTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.46, T:0.44
Consensus pattern (20 bp):
TGGGAGTGGTTTGGTTGATG
Found at i:106032651 original size:24 final size:24
Alignment explanation
Indices: 106032619--106032666 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
106032609 TTACGAGTCC
106032619 TTGAGCTCTGTGAGAGACAGGGAA
1 TTGAGCTCTGTGAGAGACAGGGAA
106032643 TTGAGCTCTGTGAGAGACAGGGAA
1 TTGAGCTCTGTGAGAGACAGGGAA
106032667 AAGAGAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.38, T:0.21
Consensus pattern (24 bp):
TTGAGCTCTGTGAGAGACAGGGAA
Found at i:106034754 original size:18 final size:18
Alignment explanation
Indices: 106034733--106034767 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
106034723 AAAAAACAAT
106034733 TGAAAATAAAAAGAAAAC
1 TGAAAATAAAAAGAAAAC
*
106034751 TGAAAATAAAAATAAAA
1 TGAAAATAAAAAGAAAA
106034768 GGGGAAGTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.09, T:0.14
Consensus pattern (18 bp):
TGAAAATAAAAAGAAAAC
Found at i:106038685 original size:26 final size:26
Alignment explanation
Indices: 106038649--106038758 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
106038639 CATGAAATTC
106038649 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
106038675 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
106038701 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
106038727 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
106038753 TTATCA
1 TTATCA
106038759 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:106042109 original size:23 final size:21
Alignment explanation
Indices: 106042078--106042120 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
106042068 TAAAATATGA
106042078 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
106042101 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
106042121 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:106045972 original size:40 final size:38
Alignment explanation
Indices: 106045880--106045976 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 38
106045870 ACCATCTCCG
* *
106045880 TCCAACCCAACACACCATGTGGAGATAAAATCGACCCA
1 TCCAACCCTACACACCATATGGAGATAAAATCGACCCA
* * * * * *
106045918 CCCATCCTTGCACACCGTATATGGGGATATAATCGACCCA
1 TCCAACCCTACACACC--ATATGGAGATAAAATCGACCCA
106045958 TCCAACCCTACACACCATA
1 TCCAACCCTACACACCATA
106045977 AAGTACCGCA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
38 14 0.31
40 31 0.69
ACGTcount: A:0.34, C:0.36, G:0.12, T:0.18
Consensus pattern (38 bp):
TCCAACCCTACACACCATATGGAGATAAAATCGACCCA
Found at i:106050824 original size:24 final size:24
Alignment explanation
Indices: 106050797--106050853 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
106050787 CTATCTAGAG
* *
106050797 CTTCTCGATATGCTTCTTTTTGAA
1 CTTCTCGATAAGCTTCTTTGTGAA
* *
106050821 CTTC-CTAATAAGGTTCTTTGTGAA
1 CTTCTC-GATAAGCTTCTTTGTGAA
106050845 CTTCTCGAT
1 CTTCTCGAT
106050854 TAAGGCTCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
23 1 0.04
24 24 0.92
25 1 0.04
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (24 bp):
CTTCTCGATAAGCTTCTTTGTGAA
Found at i:106050863 original size:25 final size:24
Alignment explanation
Indices: 106050811--106050863 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
106050801 TCGATATGCT
* * *
106050811 TCTTTTTGAACTTCCTAATAAGGT
1 TCTTTGTGAACTTCCGAATAAGGC
*
106050835 TCTTTGTGAACTTCTCGATTAAGGC
1 TCTTTGTGAACTTC-CGAATAAGGC
106050860 TCTT
1 TCTT
106050864 ATGAGCTTCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (24 bp):
TCTTTGTGAACTTCCGAATAAGGC
Found at i:106052791 original size:18 final size:17
Alignment explanation
Indices: 106052757--106052794 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
106052747 ATTAACCAAA
*
106052757 AAATAATACAAATAAAT
1 AAATAAAACAAATAAAT
106052774 AAATAAAACAACATAAAT
1 AAATAAAACAA-ATAAAT
106052792 AAA
1 AAA
106052795 ACATTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATAAAACAAATAAAT
Found at i:106053859 original size:16 final size:16
Alignment explanation
Indices: 106053838--106053871 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
106053828 GTTACTTTCT
*
106053838 TAGAGATTTGGTGTTG
1 TAGAGATTTGGTGATG
106053854 TAGAGATTTGGTGATG
1 TAGAGATTTGGTGATG
106053870 TA
1 TA
106053872 TGAAAAGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.41
Consensus pattern (16 bp):
TAGAGATTTGGTGATG
Found at i:106065325 original size:93 final size:93
Alignment explanation
Indices: 106065213--106065384 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106065203 CGCCCATAAG
* *
106065213 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
106065278 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
106065306 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
106065371 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
106065385 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:106065381 original size:46 final size:46
Alignment explanation
Indices: 106065206--106065381 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
106065196 TGTAACCCGC
* * *
106065206 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
106065252 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
106065302 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
106065345 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
106065382 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:106072919 original size:93 final size:93
Alignment explanation
Indices: 106072760--106072931 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
106072750 TCATGATAAG
* *
106072760 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
106072825 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
106072853 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
106072918 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
106072932 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:106072928 original size:46 final size:46
Alignment explanation
Indices: 106072755--106072928 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
106072745 AGCAATCATG
* *
106072755 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
106072801 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCC
* *
106072850 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
106072894 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
106072929 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
Found at i:106084654 original size:54 final size:53
Alignment explanation
Indices: 106084534--106084690 Score: 212
Period size: 54 Copynumber: 3.0 Consensus size: 53
106084524 AACAAGGGAA
***
106084534 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGA-CTTTATAAAAAAAAAGGGG
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCCAAATAAAAAAAAA-GGG
* *
106084587 GCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACCCAAATAAAAATGGAAA-GG
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCCAAATAAAAA--AAAAGGG
*
106084641 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCC-AATAATAAAAAAG
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCCAAATAAAAAAAAAG
106084691 AAAGAAAAAG
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
51 3 0.03
53 40 0.43
54 46 0.50
56 3 0.03
ACGTcount: A:0.43, C:0.20, G:0.24, T:0.13
Consensus pattern (53 bp):
GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCCAAATAAAAAAAAAGGG
Found at i:106086217 original size:104 final size:103
Alignment explanation
Indices: 106086030--106086224 Score: 252
Period size: 103 Copynumber: 1.9 Consensus size: 103
106086020 CAAAGATAGT
* * * *
106086030 GAATCTTATCTCCATGTATCGGTAATGGAGCAGATTGAAGATTGAAGTCTTATCTTCCTGAGGTA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTGAAGACTCAAGCCTTATCTTCCTGAGGTA
106086095 GCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGC
66 GCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGC
* * *
106086133 GAATCTTATCTCCATGTA-CTGGCAATGGAGCTGATTTAAGCCTCAAGGCCTTATC-TCTCTGAG
1 GAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTGAAGACTCAA-GCCTTATCTTC-CTGAG
**
106086196 GTAGCAA-GAGAGCAGGTTGAAGATTGAAG
63 GTAGCAAGGA-AGCAGACTGAAGATTGAAG
106086225 TCTTATCTTC
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
102 1 0.01
103 42 0.53
104 36 0.46
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (103 bp):
GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTGAAGACTCAAGCCTTATCTTCCTGAGGTA
GCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGC
Found at i:106086255 original size:148 final size:148
Alignment explanation
Indices: 106086057--106086372 Score: 514
Period size: 148 Copynumber: 2.1 Consensus size: 148
106086047 ATCGGTAATG
*
106086057 GAGCAGATTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCAGATTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* * *
106086122 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCT-GATTTAAGCCTCAAGGCCTTA
66 ATGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAG-TAGATTTAAGCCTCAAAGCCTCA
106086186 TC-TCTCTGAGGTAGCAAGA
130 TCTTC-CTGAGGTAGCAAGA
*
106086205 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCAGATTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
106086270 ATGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGTAGATTTAAGCCTCAAAGCCTCAT
66 ATGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGTAGATTTAAGCCTCAAAGCCTCAT
106086335 CTTCCTGAGGTAGCAAG-
131 CTTCCTGAGGTAGCAAGA
*
106086352 GAAGCAGACT-AAGAATTGAAG
1 G-AGCAGATTGAAG-ATTGAAG
106086373 ATTTTGTCTC
Statistics
Matches: 157, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
147 5 0.03
148 150 0.96
149 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.24
Consensus pattern (148 bp):
GAGCAGATTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
ATGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGTAGATTTAAGCCTCAAAGCCTCAT
CTTCCTGAGGTAGCAAGA
Found at i:106092284 original size:2 final size:2
Alignment explanation
Indices: 106092277--106092309 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
106092267 CTTGTTAACT
106092277 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
106092310 ATCATTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106096270 original size:79 final size:82
Alignment explanation
Indices: 106096154--106096338 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
106096144 ACGACTCGCT
** * *
106096154 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
106096217 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
106096234 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
106096297 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
106096314 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
106096339 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:106096338 original size:40 final size:39
Alignment explanation
Indices: 106096147--106096338 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
106096137 GGATATAACG
* ** * *
106096147 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
106096187 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
106096227 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
106096266 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
106096306 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
106096339 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:106104291 original size:79 final size:82
Alignment explanation
Indices: 106104175--106104359 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
106104165 ACGACTCGCT
** * *
106104175 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
106104238 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
106104255 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
106104318 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
106104335 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
106104360 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:106104359 original size:40 final size:39
Alignment explanation
Indices: 106104168--106104359 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
106104158 GGATATAACG
* ** * *
106104168 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
106104208 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
106104248 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
106104287 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
106104327 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
106104360 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:106116273 original size:43 final size:43
Alignment explanation
Indices: 106116226--106116338 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 43
106116216 CCTCGATTGA
* **
106116226 GATTTACGTATAAGACCATGTCTGGGACATTGACATCG-TATCT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGACATCGATAT-T
* * * *
106116269 GATTT-TGTGTAAGACCCTGTCTAGGACAGAGGCATCGATATT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGACATCGATATT
* * *
106116311 GAATTACATGTAAGACCACGTCTGGGAC
1 GATTTACGTGTAAGACCATGTCTGGGAC
106116339 GTCGACATTG
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
42 30 0.55
43 25 0.45
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACAGAGACATCGATATT
Found at i:106122767 original size:14 final size:14
Alignment explanation
Indices: 106122748--106122777 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
106122738 TAATCTGCAT
106122748 TGGATGGCCTTGAG
1 TGGATGGCCTTGAG
106122762 TGGATGGCCTTGAG
1 TGGATGGCCTTGAG
106122776 TG
1 TG
106122778 CCGGATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.43, T:0.30
Consensus pattern (14 bp):
TGGATGGCCTTGAG
Found at i:106126194 original size:12 final size:12
Alignment explanation
Indices: 106126177--106126219 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
106126167 TGCCTTGATC
*
106126177 CTCTCCTCAAAT
1 CTCTCCACAAAT
* *
106126189 CTCTCCCCACAT
1 CTCTCCACAAAT
106126201 CTCTCCACAAAT
1 CTCTCCACAAAT
*
106126213 CACTCCA
1 CTCTCCA
106126220 TTCAAAGTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.26, C:0.49, G:0.00, T:0.26
Consensus pattern (12 bp):
CTCTCCACAAAT
Found at i:106127184 original size:15 final size:16
Alignment explanation
Indices: 106127147--106127176 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
106127137 ATAGGTGTTG
106127147 AAAATATAAAATGAAA
1 AAAATATAAAATGAAA
106127163 AAAATAT-AAATGAA
1 AAAATATAAAATGAA
106127177 TTAAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (16 bp):
AAAATATAAAATGAAA
Found at i:106135323 original size:47 final size:44
Alignment explanation
Indices: 106135213--106135338 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 44
106135203 TCATTTGTGT
*
106135213 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG--CACATTACGAGA
* *
106135259 GCCAGTGTAAGACCATGTCTGAGACATGGCATCG-ACATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGCACATT---ACGAGA
*
106135307 GCTAGAGTAAGACATGTCTGGGACATGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG
106135339 GCCTCGAGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 5 0.07
46 17 0.25
47 26 0.38
48 21 0.30
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCACATTACGAGA
Found at i:106135385 original size:46 final size:46
Alignment explanation
Indices: 106135216--106135384 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
106135206 TTTGTGTGCT
* *
106135216 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GATGAGAGCC
* * * * *
106135262 AGTGTAAGACCATGTCTGAGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGAGAGCC
* *
106135310 AGAGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATG-AGAGCC
* *
106135356 AGTGTAAGACATGTTTGGGACATGTATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
106135385 GATAGTGATG
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
46 51 0.50
47 27 0.26
48 23 0.23
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGAGAGCC
Found at i:106139696 original size:117 final size:117
Alignment explanation
Indices: 106139488--106139698 Score: 332
Period size: 117 Copynumber: 1.8 Consensus size: 117
106139478 TTTGATTTGT
* * * *
106139488 TGGTTATTTGTGATTTAGCATTGCAATTTGAGTGCGACAATGTAGGGTTTGTTTTGTCAATTTTT
1 TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTGT
*
106139553 GATGCGATAGTGGTCCCGATGTTGTTGATAAAACTGTTGTAAAAATTGTATA
66 GATGCGATAGTGGTCCCGATGATGTTGATAAAACTGTTGTAAAAATTGTATA
** ** *
106139605 TGGTTAATTGTGATTTATTATTGCAATTTCAGTGCCAGGATGTAGGGTTTGTTTTTTCAATTTGT
1 TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTGT
106139670 GATGCGATAGTGGTCCCGATGATGTTGAT
66 GATGCGATAGTGGTCCCGATGATGTTGAT
106139699 TTCTATTACC
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
117 84 1.00
ACGTcount: A:0.23, C:0.09, G:0.26, T:0.43
Consensus pattern (117 bp):
TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTGT
GATGCGATAGTGGTCCCGATGATGTTGATAAAACTGTTGTAAAAATTGTATA
Found at i:106140585 original size:51 final size:51
Alignment explanation
Indices: 106140526--106140677 Score: 232
Period size: 51 Copynumber: 3.0 Consensus size: 51
106140516 GTTGCTGGTA
* * *
106140526 ATGAATATGCTAGTAATTTTGCAATATCAGATGGAGTGGATAATGTTGCTG
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
* * * *
106140577 ATGAATATGTTGGTGATTTTACAACATCAGATGGAGTGAATAATATTGCTG
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
*
106140628 ATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGGATAATGTTGCT
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCT
106140678 ACTGCACGTA
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 89 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.35
Consensus pattern (51 bp):
ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
Found at i:106143878 original size:39 final size:40
Alignment explanation
Indices: 106143820--106143920 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
106143810 AAATTGAATG
* *
106143820 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
106143859 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
106143899 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
106143921 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:106143913 original size:40 final size:40
Alignment explanation
Indices: 106143820--106144002 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
106143810 AAATTGAATG
* * * * *
106143820 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
106143859 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
106143899 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
106143939 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
106143979 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
106144003 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:106144027 original size:80 final size:80
Alignment explanation
Indices: 106143861--106144047 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
106143851 CTGAAATTAT
* * *
106143861 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
106143926 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
106143941 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
106144005 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
106144022 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
106144048 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:106152012 original size:40 final size:40
Alignment explanation
Indices: 106151910--106152093 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
106151900 AAATTGAATG
* * * * *
106151910 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
106151950 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
106151990 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
106152030 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
106152070 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
106152094 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:106152118 original size:80 final size:80
Alignment explanation
Indices: 106151952--106152138 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
106151942 TGAAAATTAT
* * *
106151952 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
106152017 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
106152032 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
106152096 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
106152113 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
106152139 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:106155840 original size:33 final size:33
Alignment explanation
Indices: 106155803--106155882 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 33
106155793 TCACGATTTG
* ** *
106155803 GTTTTAAGGGATTTCATGATTTTGTTCCTAATA
1 GTTTTAAGGGATTTCACGATTTCATTCCTAAAA
*
106155836 GTTTT-AGGGA-TTCAACGATTTCATTCGTAAAA
1 GTTTTAAGGGATTTC-ACGATTTCATTCCTAAAA
106155868 GTTTTAA-GGATTTCA
1 GTTTTAAGGGATTTCA
106155883 AGAAGATTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
31 3 0.08
32 27 0.69
33 9 0.23
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.44
Consensus pattern (33 bp):
GTTTTAAGGGATTTCACGATTTCATTCCTAAAA
Found at i:106155933 original size:16 final size:17
Alignment explanation
Indices: 106155904--106155950 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
106155894 GAATACTAAC
**
106155904 GATTTAGGTTTTTG-AG
1 GATTTAGGGATTTGAAG
106155920 GATTTAGGGATTTGAAG
1 GATTTAGGGATTTGAAG
*
106155937 GTTGTTAGGGATTT
1 GAT-TTAGGGATTT
106155951 TATGAAAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 12 0.46
17 4 0.15
18 10 0.38
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (17 bp):
GATTTAGGGATTTGAAG
Found at i:106157419 original size:24 final size:25
Alignment explanation
Indices: 106157392--106157452 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
106157382 AGCTTGTATC
* *
106157392 AGCTTCCCGTTA-ATGGCTCTC-TAG
1 AGCTTCCCGTTACATGACTCACAT-G
*
106157416 AGCTTCCCATTACATGACTCACATG
1 AGCTTCCCGTTACATGACTCACATG
106157441 AGCTTCCCGTTA
1 AGCTTCCCGTTA
106157453 TGTGGCTCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 11 0.35
25 19 0.61
26 1 0.03
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.31
Consensus pattern (25 bp):
AGCTTCCCGTTACATGACTCACATG
Found at i:106161672 original size:40 final size:40
Alignment explanation
Indices: 106161626--106161850 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
106161616 CTTGCACAAG
* * *
106161626 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
106161666 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
106161706 GCCTTCGGGTTTTAGCACGGGTATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
106161746 GCCTTCAGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
106161786 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
106161827 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
106161851 CATTCGAATA
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.80
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:106161721 original size:80 final size:80
Alignment explanation
Indices: 106161590--106161850 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
106161580 CTCAAGAAAT
* * * * * * *
106161590 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
106161653 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * * *
106161668 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCACGGGTATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
106161732 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
106161748 CTTCAGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
106161813 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
106161829 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
106161851 CATTCGAATA
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.11
80 90 0.60
81 32 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:106166777 original size:17 final size:18
Alignment explanation
Indices: 106166735--106166783 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
106166725 AGTTGAAAAG
106166735 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
106166754 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
106166771 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
106166784 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:106174022 original size:17 final size:18
Alignment explanation
Indices: 106173980--106174028 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
106173970 AGTTGAAAAG
106173980 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
106173999 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
106174016 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
106174029 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:106179637 original size:6 final size:6
Alignment explanation
Indices: 106179616--106179654 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
106179606 GTTTAAGAAC
* *
106179616 TTTTTA TTTATTA TTTTTA TTTTTA CTTTTA TCTTTA TT
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TT
106179655 ATCTTCTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:106189679 original size:46 final size:46
Alignment explanation
Indices: 106189611--106189747 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
106189601 TATATATACA
* * *
106189611 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
106189657 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
106189703 TATCTCATACACATTTCTCATTAGCCATTCAGCCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
106189748 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.26, C:0.31, G:0.07, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:106189834 original size:47 final size:47
Alignment explanation
Indices: 106189721--106189835 Score: 185
Period size: 47 Copynumber: 2.4 Consensus size: 47
106189711 ACACATTTCT
* * *
106189721 CATTAGCCATTCAGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
106189768 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
106189815 CATTGGCCATTCGGCCTTATC
1 CATTGGCCATTCGGCCTTATC
106189836 GCCATTCGGC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:106189839 original size:16 final size:16
Alignment explanation
Indices: 106189820--106189851 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
106189810 CATCACATTG
106189820 GCCATTCGGCCTTATC
1 GCCATTCGGCCTTATC
106189836 GCCATTCGGCCTTATC
1 GCCATTCGGCCTTATC
106189852 ACACATACGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.31
Consensus pattern (16 bp):
GCCATTCGGCCTTATC
Found at i:106189846 original size:63 final size:63
Alignment explanation
Indices: 106189773--106189898 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
106189763 CATCACATTG
* * *
106189773 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
106189836 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
106189899 ACACATATAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.33
Consensus pattern (63 bp):
GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
Found at i:106189943 original size:96 final size:97
Alignment explanation
Indices: 106189836--106190073 Score: 406
Period size: 96 Copynumber: 2.5 Consensus size: 97
106189826 CGGCCTTATC
106189836 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
106189901 ACATATATATACAGGTTCACATTCATCACATT
66 ACATATATATACAGGTTCACATTCATCACATT
106189933 GCCATT-GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
106189997 ACATATATATACAGGTTCACATTCATCACATT
66 ACATATATATACAGGTTCACATTCATCACATT
* * * ** **
106190029 TCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
106190074 AAATCCTAAA
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
96 95 0.71
97 38 0.29
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (97 bp):
GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATATATATACAGGTTCACATTCATCACATT
Found at i:106190018 original size:51 final size:50
Alignment explanation
Indices: 106189836--106190073 Score: 295
Period size: 51 Copynumber: 5.0 Consensus size: 50
106189826 CGGCCTTATC
* *
106189836 GCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCACATT
1 GCCATTCGGCCTTATCACACATATATACACAGGTTCACATTCATCACATT
*
106189882 GGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATT
1 -GCCATTCGGCCTTATCACACATATATACACAGGTTCACATTCATCACATT
* *
106189933 GCCATT-GGCCTTATCACAC----ATACGCATGTTCACATTCATCACATT
1 GCCATTCGGCCTTATCACACATATATACACAGGTTCACATTCATCACATT
*
106189978 GGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATT
1 -GCCATTCGGCCTTATCACACATATATACACAGGTTCACATTCATCACATT
* *
106190029 TCCATTCGGCCTTAT--CTCATATATACACA--TTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATATACACAGGTTCACATTCATCACAT
106190074 AAATCCTAAA
Statistics
Matches: 169, Mismatches: 12, Indels: 21
0.84 0.06 0.10
Matches are distributed among these distances:
45 23 0.14
46 22 0.13
47 33 0.20
48 12 0.07
49 13 0.08
50 20 0.12
51 46 0.27
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (50 bp):
GCCATTCGGCCTTATCACACATATATACACAGGTTCACATTCATCACATT
Found at i:106200984 original size:48 final size:48
Alignment explanation
Indices: 106200760--106200983 Score: 292
Period size: 48 Copynumber: 4.7 Consensus size: 48
106200750 AGTACCAATT
* * *
106200760 CCATGTCCCCGACATGGTCTTACAT--GAATTCACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCA--CACATATCATCGCCGATG
*
106200808 GCATGTCCCAGACATGGTCTTACACTA-GCACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TAGGCACACATATCATCGCCGATG
* * *
106200856 CCATGTCCCAAACATGGTCTTACACAGACACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
* * * * *
106200904 CCATGTCCCAGACATGATCTTAGACAGGCACATATATCATCGCTGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
106200952 CCATGTCCCAGACATGGTCTTACATAGGCACA
1 CCATGTCCCAGACATGGTCTTACATAGGCACA
106200984 TTCAGCACAG
Statistics
Matches: 156, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
47 1 0.01
48 152 0.97
49 1 0.01
50 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
Found at i:106204422 original size:15 final size:15
Alignment explanation
Indices: 106204397--106204465 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
106204387 GAGATGACAT
*
106204397 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
106204412 GAAGTCCAAGAAAAA
1 GAAATCCAAGATAAA
*
106204427 GAAATCCATGATAAA
1 GAAATCCAAGATAAA
106204442 GAAATCCAAGATACAA
1 GAAATCCAAGATA-AA
106204458 -AAATCCAA
1 GAAATCCAA
106204466 AATACTATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
15 44 0.96
16 2 0.04
ACGTcount: A:0.59, C:0.16, G:0.13, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:106208184 original size:46 final size:46
Alignment explanation
Indices: 106208131--106208306 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
106208121 TATTTGGGCA
106208131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
106208177 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
106208222 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
106208270 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106208307 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:106208286 original size:93 final size:93
Alignment explanation
Indices: 106208127--106208298 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106208117 AGGATATTTG
* *
106208127 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106208192 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
106208220 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106208285 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106208299 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:106211237 original size:15 final size:15
Alignment explanation
Indices: 106211217--106211285 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
106211207 GTATCTTGGG
106211217 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
106211232 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
106211247 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
106211262 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
106211277 TTTCTTTAT
1 TTTCTTTAT
106211286 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:106211286 original size:30 final size:30
Alignment explanation
Indices: 106211208--106211295 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
106211198 CATAGTATCG
* * * *
106211208 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
106211238 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
106211268 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
106211296 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:106213733 original size:46 final size:45
Alignment explanation
Indices: 106213680--106213855 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 45
106213670 TATTTGGGCA
106213680 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
106213726 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
106213773 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
106213819 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106213856 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.61
47 33 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:106213835 original size:93 final size:93
Alignment explanation
Indices: 106213676--106213847 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106213666 AGGATATTTG
* *
106213676 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106213741 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
106213769 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106213834 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106213848 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:106219423 original size:96 final size:96
Alignment explanation
Indices: 106219254--106219445 Score: 366
Period size: 96 Copynumber: 2.0 Consensus size: 96
106219244 GTGATTCTGG
* *
106219254 GTATGGACTGGTTAACTCAACATGAAGCAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAA
1 GTATAGACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAA
106219319 TTTTAGAATGGTGAAATGCTCTGTATTGAAT
66 TTTTAGAATGGTGAAATGCTCTGTATTGAAT
106219350 GTATAGACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAA
1 GTATAGACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAA
106219415 TTTTAGAATGGTGAAATGCTCTGTATTGAAT
66 TTTTAGAATGGTGAAATGCTCTGTATTGAAT
106219446 CTAATAAAGT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (96 bp):
GTATAGACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAA
TTTTAGAATGGTGAAATGCTCTGTATTGAAT
Found at i:106227271 original size:49 final size:49
Alignment explanation
Indices: 106227202--106227365 Score: 301
Period size: 49 Copynumber: 3.3 Consensus size: 49
106227192 GAAATATGTA
*
106227202 TGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGACGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
*
106227251 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGTCGACGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
106227300 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
*
106227349 TGAAAGTGTATATATAT
1 TGAAAGTGTGTATATAT
106227366 ATGTGGCAAA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
Found at i:106227402 original size:98 final size:99
Alignment explanation
Indices: 106227197--106227402 Score: 285
Period size: 98 Copynumber: 2.1 Consensus size: 99
106227187 AATATGAAAT
* *
106227197 ATGTATGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGT
1 ATGT-TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* * * *
106227262 ATATATGTGATAAGGCCTAATGGTCGACGTGATGA
65 ATATATGTGACAAAGCCGAATGGTCGACATGATGA
106227297 ATG-TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATA
1 ATGTTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG--TA
* *
106227361 TATATATGTGGCAAAGCCGAATGG-CTA-ATG-TGA
64 TATATATGTGACAAAGCCGAATGGTCGACATGATGA
106227394 ATGTTGAAA
1 ATGTTGAAA
106227403 CATGTGATTA
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
97 6 0.06
98 63 0.66
99 2 0.02
100 24 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (99 bp):
ATGTTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATA
TATATGTGACAAAGCCGAATGGTCGACATGATGA
Found at i:106227489 original size:37 final size:36
Alignment explanation
Indices: 106227434--106227520 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
106227424 AACTTGGAAA
106227434 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
106227472 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
106227509 TATGTCCGGGTA
1 TATGTCCGGGTA
106227521 AGACTTCGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:106228504 original size:40 final size:40
Alignment explanation
Indices: 106228460--106228689 Score: 397
Period size: 40 Copynumber: 5.8 Consensus size: 40
106228450 GAATTGAGAC
*
106228460 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
*
106228500 TGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAG
1 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
*
106228540 TGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAG
1 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
*
106228580 TGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAG
1 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
106228620 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
106228660 TGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 TGATGTATCCGGACTAAGTTCCGAAGAGCA
106228690 ATCGCGCTGG
Statistics
Matches: 184, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 184 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
Found at i:106232364 original size:49 final size:49
Alignment explanation
Indices: 106232295--106232458 Score: 301
Period size: 49 Copynumber: 3.3 Consensus size: 49
106232285 GAAATATGTA
* *
106232295 TGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
106232344 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
106232393 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
*
106232442 TGAAAGTGTATATATAT
1 TGAAAGTGTGTATATAT
106232459 ATGTGGCAAA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 112 1.00
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATG
Found at i:106232495 original size:98 final size:99
Alignment explanation
Indices: 106232290--106232495 Score: 276
Period size: 98 Copynumber: 2.1 Consensus size: 99
106232280 AATATGAAAT
* * *
106232290 ATGTATGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
1 ATGT-TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* * * *
106232355 ATATATGTGATAAGGCCTAATGGCCGACGTGATGA
65 ATATATGTGACAAAGCCGAATGGCCGACATGATGA
106232390 ATG-TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATA
1 ATGTTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG--TA
* *
106232454 TATATATGTGGCAAAGCCGAATGG-CTA-ATG-TGA
64 TATATATGTGACAAAGCCGAATGGCCGACATGATGA
106232487 ATGTTGAAA
1 ATGTTGAAA
106232496 CATGTGATTA
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
97 6 0.06
98 62 0.66
99 2 0.02
100 24 0.26
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (99 bp):
ATGTTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATA
TATATGTGACAAAGCCGAATGGCCGACATGATGA
Found at i:106232582 original size:37 final size:36
Alignment explanation
Indices: 106232527--106232613 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
106232517 AACTTGGAAA
106232527 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
106232565 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
106232602 TATGTCCGGGTA
1 TATGTCCGGGTA
106232614 AGACTTCGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:106238118 original size:27 final size:26
Alignment explanation
Indices: 106238074--106238125 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
106238064 CTCGCTGCAA
*
106238074 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
106238101 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
106238126 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:106238193 original size:26 final size:27
Alignment explanation
Indices: 106238164--106238223 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
106238154 CCACATATAT
*
106238164 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
106238190 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
106238217 ATATCTG
1 ATATCTG
106238224 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:106245527 original size:2 final size:2
Alignment explanation
Indices: 106245520--106245545 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
106245510 GCTTCGCCAC
106245520 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
106245546 TTGTTCTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106250819 original size:43 final size:42
Alignment explanation
Indices: 106250675--106250825 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 42
106250665 GATTGCCAAG
*
106250675 ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
1 ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
* ** * *
106250717 ATTGTGATTATGTGTAAGACCATGTCTAGGAAATTGGCATCGTT
1 A-TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* * * *
106250761 AAT-TGATTACGTGTAAGACCTTGTCTGGGACAGTGGCATCGAT
1 -ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
*
106250804 ATGAGATAACATGTAAGACCAT
1 ATGAGATTACATGTAAGACCAT
106250826 ATCTAGGATA
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
42 3 0.03
43 83 0.93
44 2 0.02
45 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:106254044 original size:15 final size:15
Alignment explanation
Indices: 106254009--106254048 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
106253999 ATTTTTCTAC
106254009 CAAATTATAAACAATT
1 CAAA-TATAAACAATT
106254025 CAAATATACAACAATT
1 CAAATATA-AACAATT
106254041 -AAATATAA
1 CAAATATAA
106254049 TCATACCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.04
15 11 0.48
16 11 0.48
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (15 bp):
CAAATATAAACAATT
Found at i:106256640 original size:85 final size:84
Alignment explanation
Indices: 106256550--106256837 Score: 274
Period size: 84 Copynumber: 3.4 Consensus size: 84
106256540 AAACAAGCTA
* ** ** * *
106256550 CCACTTGGTTCGTTTTTGAACCACACTGTTTTTAGTTACTGCTACTTGTTGTGAGTGCACGACAT
1 CCACTTGGTTTGTGATTGAACCACA-T-TTTGCAGTTACTGCAACTTGTTGTGAGTGCACAACAT
* *
106256615 ATTTGTAGA-CAAACAAACTG
64 ATTTGCAGATCAAACAAAATG
* * * * * *
106256635 TCACTTGGTTTGTGATTGAACCATATATTTGCAGTTACTGCCACTTTTTGTGGGTGCACAATATA
1 CCACTTGGTTTGTGATTGAACCACAT-TTTGCAGTTACTGCAACTTGTTGTGAGTGCACAACATA
* *
106256700 TTTACAGATTAAACAAAATG
65 TTTGCAGATCAAACAAAATG
* *
106256720 CCACTCGGTTTGTGATTGAACCACATATTGCAGTTACT-CAAACTTGTTGTGAGTGCACAACATA
1 CCACTTGGTTTGTGATTGAACCACATTTTGCAGTTACTGC-AACTTGTTGTGAGTGCACAACATA
* * *
106256784 TTTGCATATTAAACAAATTG
65 TTTGCAGATCAAACAAAATG
** **
106256804 CCACTCAGTTAATGATTGAACCACACTATTTGCA
1 CCACTTGGTTTGTGATTGAACCACA-T-TTTGCA
106256838 AATTGAACTA
Statistics
Matches: 167, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
83 1 0.01
84 108 0.65
85 53 0.32
86 5 0.03
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (84 bp):
CCACTTGGTTTGTGATTGAACCACATTTTGCAGTTACTGCAACTTGTTGTGAGTGCACAACATAT
TTGCAGATCAAACAAAATG
Found at i:106256701 original size:84 final size:84
Alignment explanation
Indices: 106256583--106256833 Score: 290
Period size: 84 Copynumber: 3.0 Consensus size: 84
106256573 CACTGTTTTT
* * * * * *
106256583 AGTTACTGCTACTTGTTGTGAGTGCACGACATATTTGTAGA-CAAACAAACTGTCACTTGGTTTG
1 AGTTACTGCAACTTGTTGTGAGTGCACAACATATTTGCAGATCAAACAAAATGCCACTCGGTTTG
*
106256647 TGATTGAACCATATATTTGC
66 TGATTGAACCACATA-TTGC
* * * * * *
106256667 AGTTACTGCCACTTTTTGTGGGTGCACAATATATTTACAGATTAAACAAAATGCCACTCGGTTTG
1 AGTTACTGCAACTTGTTGTGAGTGCACAACATATTTGCAGATCAAACAAAATGCCACTCGGTTTG
106256732 TGATTGAACCACATATTGC
66 TGATTGAACCACATATTGC
* * * * *
106256751 AGTTACT-CAAACTTGTTGTGAGTGCACAACATATTTGCATATTAAACAAATTGCCACTCAGTTA
1 AGTTACTGC-AACTTGTTGTGAGTGCACAACATATTTGCAGATCAAACAAAATGCCACTCGGTTT
*
106256815 ATGATTGAACCACACTATT
65 GTGATTGAACCACA-TATT
106256834 TGCAAATTGA
Statistics
Matches: 142, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
83 1 0.01
84 104 0.73
85 37 0.26
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (84 bp):
AGTTACTGCAACTTGTTGTGAGTGCACAACATATTTGCAGATCAAACAAAATGCCACTCGGTTTG
TGATTGAACCACATATTGC
Found at i:106268051 original size:49 final size:49
Alignment explanation
Indices: 106267990--106268136 Score: 285
Period size: 49 Copynumber: 3.0 Consensus size: 49
106267980 GTATGAGGTA
106267990 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
106268039 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
106268088 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
106268137 GCCGATGTGA
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 96 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:106268145 original size:26 final size:26
Alignment explanation
Indices: 106268109--106268161 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
106268099 TAAGGCCTAA
106268109 TGGCCGATGTGATGAATGTGAAAGTG
1 TGGCCGATGTGATGAATGTGAAAGTG
106268135 TGGCCGATGTGATGAATGTGAAAGTG
1 TGGCCGATGTGATGAATGTGAAAGTG
106268161 T
1 T
106268162 ATATATATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.08, G:0.38, T:0.28
Consensus pattern (26 bp):
TGGCCGATGTGATGAATGTGAAAGTG
Found at i:106268146 original size:75 final size:75
Alignment explanation
Indices: 106268060--106268211 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
106268050 TAAGGCCTAA
106268060 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
106268125 TGTGAAAGTG
66 TGTGAAAGTG
106268135 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
106268200 TGTGAAAGTG
66 TGTGAAAGTG
106268210 TG
1 TG
106268212 TATATATGTG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (75 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTG
Found at i:106268184 original size:173 final size:173
Alignment explanation
Indices: 106267987--106268309 Score: 628
Period size: 173 Copynumber: 1.9 Consensus size: 173
106267977 TTTGTATGAG
106267987 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATA
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATA
* *
106268052 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
66 AGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAT
106268117 GTGATGAATGTGAAAGTGTGGCCGATGTGATGAATGTGAAAGT
131 GTGATGAATGTGAAAGTGTGGCCGATGTGATGAATGTGAAAGT
106268160 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATA
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATA
106268225 AGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAT
66 AGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAT
106268290 GTGATGAATGTGAAAGTGTG
131 GTGATGAATGTGAAAGTGTG
106268310 TATATATGTG
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 148 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (173 bp):
GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATA
AGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAT
GTGATGAATGTGAAAGTGTGGCCGATGTGATGAATGTGAAAGT
Found at i:106268190 original size:49 final size:49
Alignment explanation
Indices: 106268135--106268467 Score: 532
Period size: 49 Copynumber: 6.9 Consensus size: 49
106268125 TGTGAAAGTG
106268135 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
106268184 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
106268233 TGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
* *
106268282 TGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
* * *
106268331 TGGCCGATGTGAAGAATGTGAAAGTGTTTATAAATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
* *
106268380 TGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGAT-AGAGCCGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG-GCCTAA
*
106268427 TGGCCAATGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
106268468 TCCCGAAGGG
Statistics
Matches: 264, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
46 2 0.01
47 44 0.17
48 9 0.03
49 209 0.79
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
Found at i:106268216 original size:124 final size:124
Alignment explanation
Indices: 106268011--106268259 Score: 471
Period size: 124 Copynumber: 2.0 Consensus size: 124
106268001 TAAGGCCTAA
*
106268011 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
106268076 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
106268135 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
106268200 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
106268259 T
1 T
106268260 ATATATATGT
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (124 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
Found at i:106270905 original size:40 final size:40
Alignment explanation
Indices: 106270754--106270992 Score: 385
Period size: 40 Copynumber: 6.0 Consensus size: 40
106270744 AAGTCTCGAC
106270754 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
106270793 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCGAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
106270832 GATGTATCCGGGCTAAGT-CCGAAGAGCGTTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
106270871 GATGTATCCGGGCTAAGTCCCGAAGAGCGTTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
106270911 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
106270951 GATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
106270991 GA
1 GA
106270993 CGTGTATTCG
Statistics
Matches: 189, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
39 78 0.41
40 111 0.59
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:106274421 original size:49 final size:49
Alignment explanation
Indices: 106274359--106274714 Score: 596
Period size: 49 Copynumber: 7.4 Consensus size: 49
106274349 TTTGTATGAG
106274359 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
106274408 GTATATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
106274457 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
106274506 GTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
106274555 GTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
106274604 GTGTATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * *
106274650 GTGTATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
106274699 GTATA-A-ATGTGATAAG
1 GTATATATATGTGATAAG
106274715 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 12, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
46 7 0.02
47 45 0.15
48 39 0.13
49 201 0.69
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:106279911 original size:34 final size:35
Alignment explanation
Indices: 106279838--106279913 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 35
106279828 TAGCATTCAG
* * * * *
106279838 CATGCTTATAGTAGTTCAATTTAGTAGCAAATAAT
1 CATGCTTATAATAGATCAACTCACTAGCAAATAAT
*
106279873 -ATGCTTATAATAGATCAACTCACTAGCAAA-ATT
1 CATGCTTATAATAGATCAACTCACTAGCAAATAAT
106279906 CATGCTTA
1 CATGCTTA
106279914 ATAAGTGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
33 2 0.06
34 32 0.94
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (35 bp):
CATGCTTATAATAGATCAACTCACTAGCAAATAAT
Found at i:106284643 original size:24 final size:24
Alignment explanation
Indices: 106284611--106284661 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
106284601 AAGTCTGTCA
* **
106284611 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAAGAGCAGATAAG
106284635 GGATAGGATTTAAGAGCAGATAAG
1 GGATAGGATTTAAGAGCAGATAAG
106284659 GGA
1 GGA
106284662 GGAAATCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.37, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAAGAGCAGATAAG
Found at i:106291358 original size:24 final size:24
Alignment explanation
Indices: 106291326--106291376 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
106291316 AAGTCTGTCA
**
106291326 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
106291350 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
106291374 GGA
1 GGA
106291377 GGAAATCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:106298040 original size:24 final size:24
Alignment explanation
Indices: 106298008--106298058 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
106297998 AAGTCTATCA
**
106298008 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
106298032 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
106298056 GGA
1 GGA
106298059 GGAAATCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:106304695 original size:24 final size:24
Alignment explanation
Indices: 106304663--106304713 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
106304653 AAGTCTGTCA
**
106304663 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
106304687 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
106304711 GGA
1 GGA
106304714 GGAAATCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:106305770 original size:24 final size:24
Alignment explanation
Indices: 106305736--106305783 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
106305726 AATCGTAACC
106305736 TGAAAAGATACGCGATGTTAGAGT
1 TGAAAAGATACGCGATGTTAGAGT
*
106305760 TGAAAATATACGCGATGTTAGAGT
1 TGAAAAGATACGCGATGTTAGAGT
106305784 GTGGCAATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (24 bp):
TGAAAAGATACGCGATGTTAGAGT
Found at i:106319506 original size:2 final size:2
Alignment explanation
Indices: 106319499--106319534 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
106319489 GAAGAAAAAT
106319499 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
106319535 GAGGTGAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:106321013 original size:28 final size:28
Alignment explanation
Indices: 106320967--106321035 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
106320957 TTTAAAACCC
*
106320967 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106320994 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106321022 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
106321036 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:106325777 original size:30 final size:30
Alignment explanation
Indices: 106325741--106325900 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
106325731 GACAAGATTG
* * * *
106325741 GCACTAAGTGTGTGGGTTTAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
106325771 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
106325799 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
106325828 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
106325858 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
106325887 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106325901 GATTCACTAT
Statistics
Matches: 119, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 44 0.37
31 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:106325872 original size:59 final size:57
Alignment explanation
Indices: 106325741--106325900 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
106325731 GACAAGATTG
* * * * *
106325741 GCACTAAGTGTGTGGGTTTAAAATTATATAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
106325799 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
106325858 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
106325901 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 22 0.24
58 19 0.20
59 50 0.54
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:106333803 original size:30 final size:30
Alignment explanation
Indices: 106333767--106333926 Score: 195
Period size: 29 Copynumber: 5.5 Consensus size: 30
106333757 GACAAGATTG
* * * * *
106333767 GCACTAAGTGTGTGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
*
106333797 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATACA
*
106333825 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
*
106333854 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
*
106333884 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
106333913 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106333927 GATTCACTAT
Statistics
Matches: 119, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 44 0.37
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACA
Found at i:106333893 original size:59 final size:57
Alignment explanation
Indices: 106333796--106333926 Score: 210
Period size: 59 Copynumber: 2.3 Consensus size: 57
106333786 AAAATTGTAC
*
106333796 AGCACTAAGTGTGCGAGTTTGATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTGATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
*
106333853 AGCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG---ATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
106333912 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
106333927 GATTCACTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
56 2 0.03
57 17 0.25
59 50 0.72
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAGTCTGATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:106333938 original size:29 final size:29
Alignment explanation
Indices: 106333796--106333926 Score: 203
Period size: 29 Copynumber: 4.5 Consensus size: 29
106333786 AAAATTGTAC
* * *
106333796 AGCACTAAGTGTGCGAGTTTG--ATTATAC
1 AGCACTAAGTGTGCGAG-CTGAAAATATAT
106333824 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
106333853 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
106333883 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
106333912 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
106333927 GATTCACTAT
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
27 2 0.02
28 17 0.18
29 49 0.51
30 29 0.30
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:106338337 original size:28 final size:28
Alignment explanation
Indices: 106338292--106338360 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
106338282 CTTAAAACCC
*
106338292 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106338319 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106338347 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
106338361 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:106343769 original size:14 final size:14
Alignment explanation
Indices: 106343750--106343782 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
106343740 AAGGTTGATG
*
106343750 CTTATGTAATGTAT
1 CTTATGAAATGTAT
106343764 CTTATGAAATGTAT
1 CTTATGAAATGTAT
106343778 -TTATG
1 CTTATG
106343783 GTATAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (14 bp):
CTTATGAAATGTAT
Found at i:106349190 original size:22 final size:22
Alignment explanation
Indices: 106349164--106349257 Score: 145
Period size: 22 Copynumber: 4.3 Consensus size: 22
106349154 CTAAGTCAAT
*
106349164 AGGACGGCTCAACGCCATAGAC
1 AGGACGGCTCAACGCCGTAGAC
*
106349186 AGGACGACTCAAC-CCTGTAGAC
1 AGGACGGCTCAACGCC-GTAGAC
*
106349208 AGGATGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCGTAGAC
106349230 AGGACGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCGTAGAC
106349252 AGGACG
1 AGGACG
106349258 ACTAAAAGCC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
21 2 0.03
22 61 0.94
23 2 0.03
ACGTcount: A:0.30, C:0.30, G:0.30, T:0.11
Consensus pattern (22 bp):
AGGACGGCTCAACGCCGTAGAC
Found at i:106349268 original size:22 final size:22
Alignment explanation
Indices: 106349164--106349270 Score: 108
Period size: 22 Copynumber: 4.9 Consensus size: 22
106349154 CTAAGTCAAT
* * *
106349164 AGGACGGCTCAACGCCATAGAC
1 AGGACGACTCAAAGCCGTAGAC
*
106349186 AGGACGACTC-AACCCTGTAGAC
1 AGGACGACTCAAAGCC-GTAGAC
* * *
106349208 AGGATGGCTCAACGCCGTAGAC
1 AGGACGACTCAAAGCCGTAGAC
* *
106349230 AGGACGGCTCAACGCCGTAGAC
1 AGGACGACTCAAAGCCGTAGAC
*
106349252 AGGACGACTAAAAGCCGTA
1 AGGACGACTCAAAGCCGTA
106349271 AATATCTCAA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
21 3 0.04
22 65 0.92
23 3 0.04
ACGTcount: A:0.32, C:0.29, G:0.28, T:0.11
Consensus pattern (22 bp):
AGGACGACTCAAAGCCGTAGAC
Found at i:106349269 original size:44 final size:44
Alignment explanation
Indices: 106349181--106349270 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 44
106349171 CTCAACGCCA
* * * *
106349181 TAGACAGGACGACTCAACCCTGTAGACAGGATGGCTCAACGCCG
1 TAGACAGGACGACTCAACCCTGTAGACAGGACGACTAAAAGCCG
*
106349225 TAGACAGGACGGCTCAACGCC-GTAGACAGGACGACTAAAAGCCG
1 TAGACAGGACGACTCAAC-CCTGTAGACAGGACGACTAAAAGCCG
106349269 TA
1 TA
106349271 AATATCTCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 38 0.95
45 2 0.05
ACGTcount: A:0.32, C:0.28, G:0.28, T:0.12
Consensus pattern (44 bp):
TAGACAGGACGACTCAACCCTGTAGACAGGACGACTAAAAGCCG
Found at i:106349802 original size:19 final size:19
Alignment explanation
Indices: 106349780--106349817 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
106349770 ATGTGGAGCC
106349780 CACGAGCCCAT-TAGGCCCA
1 CACG-GCCCATCTAGGCCCA
106349799 CACGGCCCATCTAGGCCCA
1 CACGGCCCATCTAGGCCCA
106349818 ACGTGGCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.24, C:0.45, G:0.21, T:0.11
Consensus pattern (19 bp):
CACGGCCCATCTAGGCCCA
Found at i:106351609 original size:48 final size:50
Alignment explanation
Indices: 106351543--106351660 Score: 116
Period size: 48 Copynumber: 2.4 Consensus size: 50
106351533 TGGTTCTCTG
** * * **
106351543 GAGCTTCCCAATAT-TGGCTCCCTTGAACTTCCCGATA-TTGGCTCGTAT
1 GAGCTTCCCGTTATATGGCTCCCTGGAACTTCCCGATACATGGCTCACAT
* * * *
106351591 GAGCTTCTCGTTA-ATGGCTCTCTGGAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCCCTGGAACTTCCCGATACATGGCTCACAT
*
106351640 GAGTTTCCCGTTATATGGCTC
1 GAGCTTCCCGTTATATGGCTC
106351661 GAAAGAGCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
48 29 0.53
49 19 0.35
50 7 0.13
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (50 bp):
GAGCTTCCCGTTATATGGCTCCCTGGAACTTCCCGATACATGGCTCACAT
Found at i:106351647 original size:25 final size:24
Alignment explanation
Indices: 106351515--106351660 Score: 89
Period size: 24 Copynumber: 6.0 Consensus size: 24
106351505 AAGGCTCTTT
* * *
106351515 CATGAGCTTCCTGATTAATGGTTCT
1 CATGAGCTTCCCG-TTAATGGCTCA
** * *
106351540 C-TGGAGCTTCCCAATATTGGCTCC
1 CAT-GAGCTTCCCGTTAATGGCTCA
* * * * *
106351564 CTTGAACTTCCCGATATTGGCTCG
1 CATGAGCTTCCCGTTAATGGCTCA
* * *
106351588 TATGAGCTTCTCGTTAATGGCTCT
1 CATGAGCTTCCCGTTAATGGCTCA
106351612 C-TGGAGCTTCCCGTTACATGGCTCA
1 CAT-GAGCTTCCCGTTA-ATGGCTCA
*
106351637 CATGAGTTTCCCGTTATATGGCTC
1 CATGAGCTTCCCGTTA-ATGGCTC
106351661 GAAAGAGCAT
Statistics
Matches: 95, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
23 1 0.01
24 56 0.59
25 37 0.39
26 1 0.01
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (24 bp):
CATGAGCTTCCCGTTAATGGCTCA
Found at i:106353169 original size:22 final size:22
Alignment explanation
Indices: 106353143--106353185 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
106353133 GATAACAACA
*
106353143 AAATATTCATAGACATGTTCAC
1 AAATATTCATAGACATATTCAC
106353165 AAATATTCATAGACATATTCA
1 AAATATTCATAGACATATTCA
106353186 TAGACATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (22 bp):
AAATATTCATAGACATATTCAC
Done.