Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 34 of 438
Found at i:8250660 original size:11 final size:11
Alignment explanation
Indices: 8250644--8250673 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8250634 TAACATTAAG
8250644 AATATATATAT
1 AATATATATAT
*
8250655 AATATAAATAT
1 AATATATATAT
8250666 AATATATA
1 AATATATA
8250674 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:8251389 original size:12 final size:12
Alignment explanation
Indices: 8251372--8251412 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
8251362 GGTGGTAGAC
8251372 AATGGGAGGAAA
1 AATGGGAGGAAA
8251384 AATGGGAGGAAA
1 AATGGGAGGAAA
8251396 AAT-GGAGGAAA
1 AATGGGAGGAAA
8251407 AATGGG
1 AATGGG
8251413 CAAGTGGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.39
12 17 0.61
ACGTcount: A:0.49, C:0.00, G:0.41, T:0.10
Consensus pattern (12 bp):
AATGGGAGGAAA
Found at i:8251402 original size:11 final size:11
Alignment explanation
Indices: 8251376--8251411 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
8251366 GTAGACAATG
8251376 GGAGGAAAAAT
1 GGAGGAAAAAT
8251387 GGGAGGAAAAAT
1 -GGAGGAAAAAT
8251399 GGAGGAAAAAT
1 GGAGGAAAAAT
8251410 GG
1 GG
8251412 GCAAGTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.08
Consensus pattern (11 bp):
GGAGGAAAAAT
Found at i:8251467 original size:23 final size:23
Alignment explanation
Indices: 8251437--8251513 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 23
8251427 GTTAGGTGGC
**
8251437 TAGGTTTTTTAGTTTTTTTTTGT
1 TAGGTTTTTTTCTTTTTTTTTGT
8251460 TAGGTTTTTTTCTTTTTTTTT-T
1 TAGGTTTTTTTCTTTTTTTTTGT
*
8251482 T---TTTTTTTTTTTTTTTTTGGT
1 TAGGTTTTTTTCTTTTTTTTT-GT
8251503 TAGGTTTTTTT
1 TAGGTTTTTTT
8251514 GGGGGGCTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
19 16 0.35
21 2 0.04
22 2 0.04
23 19 0.41
24 7 0.15
ACGTcount: A:0.05, C:0.01, G:0.13, T:0.81
Consensus pattern (23 bp):
TAGGTTTTTTTCTTTTTTTTTGT
Found at i:8251513 original size:1 final size:1
Alignment explanation
Indices: 8251464--8251499 Score: 63
Period size: 1 Copynumber: 36.0 Consensus size: 1
8251454 TTTTGTTAGG
*
8251464 TTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8251500 GGTTAGGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:8252053 original size:126 final size:125
Alignment explanation
Indices: 8251824--8252060 Score: 384
Period size: 126 Copynumber: 1.9 Consensus size: 125
8251814 ACATCTTCTC
*
8251824 AAAAAGCGTCCACCTAGGAGCTTTTATCTGTAATTTTGCTGACAGTGCATCCTGCTTGAAGTGTC
1 AAAAAGCGTCCACCTAGGAGCTTTTATCTGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTC
* *
8251889 TTTGATACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGA
66 TTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGA
* * * * *
8251949 AAAAGAGCGTCCACGTGGGAGCTTTTTTCTGTATTTTTGCTGACAGTGCATCTTGCTTGAAGCGT
1 AAAA-AGCGTCCACCTAGGAGCTTTTATCTGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCGT
*
8252014 TTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCA
65 CTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCA
8252061 AGGTAAAAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
125 4 0.04
126 98 0.96
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (125 bp):
AAAAAGCGTCCACCTAGGAGCTTTTATCTGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTC
TTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGA
Found at i:8252205 original size:34 final size:34
Alignment explanation
Indices: 8252167--8252242 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
8252157 AAGCCCTAAT
* *
8252167 TTAATTTATTTAAAATCC-TAGAACCCTAATTTAC
1 TTAATTTATTTAAAAACCATA-AACCCTAATTTAA
*
8252201 TTAATTTATTTAAAAACCATAAATCCTAATTTAA
1 TTAATTTATTTAAAAACCATAAACCCTAATTTAA
*
8252235 TTTATTTA
1 TTAATTTA
8252243 AAACCTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 35 0.95
35 2 0.05
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.45
Consensus pattern (34 bp):
TTAATTTATTTAAAAACCATAAACCCTAATTTAA
Found at i:8252244 original size:21 final size:22
Alignment explanation
Indices: 8252227--8252269 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8252217 CCATAAATCC
8252227 TAATTTAATTTATTTAAAACCT
1 TAATTTAATTTATTTAAAACCT
*
8252249 TATTTTAATTTATTTAAAACC
1 TAATTTAATTTATTTAAAACC
8252270 CTAAACCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (22 bp):
TAATTTAATTTATTTAAAACCT
Found at i:8252288 original size:85 final size:87
Alignment explanation
Indices: 8252160--8252360 Score: 289
Period size: 87 Copynumber: 2.3 Consensus size: 87
8252150 AAACCCTAAG
* *
8252160 CCCTAATTTAATTTATTTAAAATCCTAGAACCCTAATTTACTTAATTTATTTAAAAACCATAAAT
1 CCCTAATTTAATTTATTTAAAACCCTA-AACCCTAATTTACTTAATTTATTTAAAAACCATAAAC
*
8252225 CCT-AA-TTTAATTTATTTAAAA
65 CCTAAACTCTAATTTATTTAAAA
* * * *
8252246 CCTTATTTTAATTTATTTAAAACCCTAAACCCTAATTTACTTAGTTTATTTAAAAATCATAAACC
1 CCCTAATTTAATTTATTTAAAACCCTAAACCCTAATTTACTTAATTTATTTAAAAACCATAAACC
*
8252311 CTAAACTCTAATTTATTTAAAG
66 CTAAACTCTAATTTATTTAAAA
* *
8252333 CCCTAACTTAGTTTATTTAAAACCCTAA
1 CCCTAATTTAATTTATTTAAAACCCTAA
8252361 CTTAATTTAT
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
85 37 0.37
86 26 0.26
87 38 0.38
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.41
Consensus pattern (87 bp):
CCCTAATTTAATTTATTTAAAACCCTAAACCCTAATTTACTTAATTTATTTAAAAACCATAAACC
CTAAACTCTAATTTATTTAAAA
Found at i:8252376 original size:22 final size:22
Alignment explanation
Indices: 8252306--8252378 Score: 110
Period size: 22 Copynumber: 3.2 Consensus size: 22
8252296 TAAAAATCAT
8252306 AAACCCTAAACTCTAATTTATTTA
1 AAACCCT-AACT-TAATTTATTTA
* *
8252330 AAGCCCTAACTTAGTTTATTTA
1 AAACCCTAACTTAATTTATTTA
8252352 AAACCCTAACTTAATTTATTTA
1 AAACCCTAACTTAATTTATTTA
8252374 AAACC
1 AAACC
8252379 TTAAAAACCC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 35 0.78
23 4 0.09
24 6 0.13
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.37
Consensus pattern (22 bp):
AAACCCTAACTTAATTTATTTA
Found at i:8254629 original size:33 final size:33
Alignment explanation
Indices: 8254592--8254661 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
8254582 GTTAGTCGAG
*
8254592 TTGACAAATCCTATTTTAGCAACTAAACTCAAT
1 TTGACAAATCCTATTTTAGCAACCAAACTCAAT
*
8254625 TTGACAAATCCTATTTTAGCAACCGAACTCAAT
1 TTGACAAATCCTATTTTAGCAACCAAACTCAAT
8254658 TTGA
1 TTGA
8254662 AATTTTTTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (33 bp):
TTGACAAATCCTATTTTAGCAACCAAACTCAAT
Found at i:8260949 original size:63 final size:63
Alignment explanation
Indices: 8260765--8260956 Score: 312
Period size: 63 Copynumber: 3.0 Consensus size: 63
8260755 TCACACGAAG
* * * **
8260765 ATATTCTTATCACATCAGGAATGAAGCCCATCTTAATAGAGTTTGAATTATCAAATGCAAGTT
1 ATATTCTTATCACATCAGGAATGAGGCACATCTTAATAGAGTTTGAATTACCAAATTTAAGTT
* *
8260828 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAAAGTTTGAATTACCAAATTTAAGTT
1 ATATTCTTATCACATCAGGAATGAGGCACATCTTAATAGAGTTTGAATTACCAAATTTAAGTT
*
8260891 ATATTCTTATCACATCAGGAATGAGGCACATCTTAATAGAGTTTGAATTACCACATTTAAGTT
1 ATATTCTTATCACATCAGGAATGAGGCACATCTTAATAGAGTTTGAATTACCAAATTTAAGTT
8260954 ATA
1 ATA
8260957 AATCAGGTTG
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 120 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34
Consensus pattern (63 bp):
ATATTCTTATCACATCAGGAATGAGGCACATCTTAATAGAGTTTGAATTACCAAATTTAAGTT
Found at i:8281676 original size:10 final size:10
Alignment explanation
Indices: 8281661--8281702 Score: 61
Period size: 9 Copynumber: 4.4 Consensus size: 10
8281651 ATTTCCTTTC
8281661 ATAAAAAATT
1 ATAAAAAATT
8281671 AT-AAAAATT
1 ATAAAAAATT
8281680 ATAAAAAA-T
1 ATAAAAAATT
*
8281689 ATGAAAAATT
1 ATAAAAAATT
8281699 ATAA
1 ATAA
8281703 TTTTTATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 17 0.61
10 11 0.39
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:8281685 original size:19 final size:19
Alignment explanation
Indices: 8281661--8281702 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
8281651 ATTTCCTTTC
8281661 ATAAAAAATTAT-AAAAATT
1 ATAAAAAA-TATGAAAAATT
8281680 ATAAAAAATATGAAAAATT
1 ATAAAAAATATGAAAAATT
8281699 ATAA
1 ATAA
8281703 TTTTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
ATAAAAAATATGAAAAATT
Found at i:8282048 original size:18 final size:18
Alignment explanation
Indices: 8282020--8282063 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
8282010 CTTTATATAT
8282020 AATAT-AAATATAAACAA
1 AATATAAAATATAAACAA
8282037 AATATAAAATATAAACAA
1 AATATAAAATATAAACAA
8282055 AATATAAAA
1 AATATAAAA
8282064 AAAAAACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (18 bp):
AATATAAAATATAAACAA
Found at i:8282070 original size:18 final size:18
Alignment explanation
Indices: 8282031--8282071 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
8282021 ATATAAATAT
* *
8282031 AAACAAAATATAAAATAT
1 AAACAAAATATAAAAAAA
8282049 AAACAAAATATAAAAAAA
1 AAACAAAATATAAAAAAA
8282067 AAACA
1 AAACA
8282072 TACAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (18 bp):
AAACAAAATATAAAAAAA
Found at i:8282203 original size:14 final size:14
Alignment explanation
Indices: 8282184--8282213 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8282174 AGTTTAAATT
*
8282184 TCGAATTATTCGAA
1 TCGAATTAATCGAA
8282198 TCGAATTAATCGAA
1 TCGAATTAATCGAA
8282212 TC
1 TC
8282214 AGCTCTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (14 bp):
TCGAATTAATCGAA
Found at i:8282499 original size:37 final size:39
Alignment explanation
Indices: 8282444--8282516 Score: 123
Period size: 37 Copynumber: 1.9 Consensus size: 39
8282434 TAATTTTTTT
8282444 TTTCAAATTTATGTCTACTATTTATATTATTGAATTAAA
1 TTTCAAATTTATGTCTACTATTTATATTATTGAATTAAA
*
8282483 TTTCACATTT-TG-CTACTATTTATATTATTGAATT
1 TTTCAAATTTATGTCTACTATTTATATTATTGAATT
8282517 GTTTAACCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 22 0.67
38 2 0.06
39 9 0.27
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.53
Consensus pattern (39 bp):
TTTCAAATTTATGTCTACTATTTATATTATTGAATTAAA
Found at i:8283824 original size:26 final size:26
Alignment explanation
Indices: 8283787--8283844 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
8283777 TGATTATATA
8283787 AAAATT-TCAATAA-ATAAAAATGTAT
1 AAAATTATCAATAATATAAAAAT-TAT
* * *
8283812 AAAATTATTAATAATATAAATATTTT
1 AAAATTATCAATAATATAAAAATTAT
8283838 AAAATTA
1 AAAATTA
8283845 AAATTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 6 0.21
26 15 0.54
27 7 0.25
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAATTATCAATAATATAAAAATTAT
Found at i:8283852 original size:14 final size:15
Alignment explanation
Indices: 8283809--8283859 Score: 61
Period size: 14 Copynumber: 3.3 Consensus size: 15
8283799 AATAAAAATG
8283809 TATAAAATTATTAATAA
1 TATAAAATT-TTAA-AA
8283826 TATAAATATTTTAAAA
1 TATAAA-ATTTTAAAA
8283842 T-TAAAATTTTAAAA
1 TATAAAATTTTAAAA
8283856 -ATAA
1 TATAA
8283860 CATGGACAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
14 12 0.38
15 4 0.12
16 3 0.09
17 10 0.31
18 3 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TATAAAATTTTAAAA
Found at i:8283856 original size:15 final size:16
Alignment explanation
Indices: 8283809--8283858 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 16
8283799 AATAAAAATG
*
8283809 TATAAAATTATTAATAA
1 TATAAAATT-TTAAAAA
8283826 TATAAATATTTT-AAAA
1 TATAAA-ATTTTAAAAA
8283842 T-TAAAATTTTAAAAA
1 TATAAAATTTTAAAAA
8283857 TA
1 TA
8283859 ACATGGACAG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 5 0.17
15 9 0.31
16 4 0.14
17 8 0.28
18 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TATAAAATTTTAAAAA
Found at i:8284325 original size:48 final size:48
Alignment explanation
Indices: 8284270--8284369 Score: 200
Period size: 48 Copynumber: 2.1 Consensus size: 48
8284260 AAACTCATAC
8284270 TTGTTGGTGAGTGGTTCCTAGATTTGATGTATTGACAAGCATCAATTT
1 TTGTTGGTGAGTGGTTCCTAGATTTGATGTATTGACAAGCATCAATTT
8284318 TTGTTGGTGAGTGGTTCCTAGATTTGATGTATTGACAAGCATCAATTT
1 TTGTTGGTGAGTGGTTCCTAGATTTGATGTATTGACAAGCATCAATTT
8284366 TTGT
1 TTGT
8284370 GAGATAACTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (48 bp):
TTGTTGGTGAGTGGTTCCTAGATTTGATGTATTGACAAGCATCAATTT
Found at i:8286184 original size:46 final size:46
Alignment explanation
Indices: 8286117--8286288 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
8286107 AACCCGCCCC
*
8286117 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
8286163 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCATCCA
* * ***
8286211 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
8286256 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
8286289 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 1 0.01
46 60 0.57
47 28 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
Found at i:8286229 original size:93 final size:93
Alignment explanation
Indices: 8286122--8286292 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
8286112 GCCCCTAAGT
***
8286122 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8286187 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
8286215 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8286280 CGAGTTCGGATGC
66 CGAGTTCGGATGC
8286293 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8286752 original size:19 final size:20
Alignment explanation
Indices: 8286725--8286764 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8286715 AAATATTAAA
* *
8286725 AATATATTTTTATATTTTTT
1 AATATATTTTAATAATTTTT
8286745 AATA-ATTTTAATAATTTTT
1 AATATATTTTAATAATTTTT
8286764 A
1 A
8286765 TGTTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
AATATATTTTAATAATTTTT
Found at i:8286784 original size:30 final size:31
Alignment explanation
Indices: 8286748--8286805 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
8286738 ATTTTTTAAT
*
8286748 AATTTTA-ATAATTTTT-ATGTTTAAAAATAC
1 AATTTTAGAAAATTTTTAAT-TTTAAAAATAC
8286778 AATTTTAGAAAATTTTTAATTTTAAAAA
1 AATTTTAGAAAATTTTTAATTTTAAAAA
8286806 ATTAAGTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 7 0.28
31 16 0.64
32 2 0.08
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (31 bp):
AATTTTAGAAAATTTTTAATTTTAAAAATAC
Found at i:8287508 original size:21 final size:21
Alignment explanation
Indices: 8287482--8287523 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8287472 ATATAGCATG
8287482 TTAGTTTCTCATTTCTTCCCA
1 TTAGTTTCTCATTTCTTCCCA
8287503 TTAGTTTCTCATTTCTTCCCA
1 TTAGTTTCTCATTTCTTCCCA
8287524 CACCTCAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.29, G:0.05, T:0.52
Consensus pattern (21 bp):
TTAGTTTCTCATTTCTTCCCA
Found at i:8292143 original size:10 final size:11
Alignment explanation
Indices: 8292126--8292156 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
8292116 GTTGTATATG
8292126 TAAAAATAAAA
1 TAAAAATAAAA
8292137 T-AAAATAAAA
1 TAAAAATAAAA
8292147 TAAAAATAAA
1 TAAAAATAAA
8292157 GAACACACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:8303492 original size:35 final size:35
Alignment explanation
Indices: 8303448--8303614 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
8303438 TCCTCATTGA
** *
8303448 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* ** *
8303483 AATGCCATACCTACATTTCTTAACTTAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
8303523 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
8303558 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
8303593 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
8303615 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 86 0.75
39 3 0.03
40 26 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:8303534 original size:75 final size:73
Alignment explanation
Indices: 8303443--8303614 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
8303433 GGTTTTCCTC
** * * **
8303443 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
*
8303507 TTAGTATGG
65 TCAGTATGG
*
8303516 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
8303581 CTCAGTATGG
64 CTCAGTATGG
8303591 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
8303615 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:8306788 original size:19 final size:19
Alignment explanation
Indices: 8306764--8306801 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8306754 CAATTTATTT
* *
8306764 TTATATTCTATAAATATAA
1 TTATATTATATAAACATAA
8306783 TTATATTATATAAACATAA
1 TTATATTATATAAACATAA
8306802 AATGATGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
TTATATTATATAAACATAA
Found at i:8306987 original size:13 final size:13
Alignment explanation
Indices: 8306969--8306993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8306959 ATAATGTCTA
8306969 AACAATTTTATAC
1 AACAATTTTATAC
8306982 AACAATTTTATA
1 AACAATTTTATA
8306994 GTATTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AACAATTTTATAC
Found at i:8308077 original size:17 final size:17
Alignment explanation
Indices: 8308057--8308091 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8308047 TGCATGGCTC
*
8308057 GACTGCATGTGCTTCAT
1 GACTGCATGTGCTGCAT
*
8308074 GACTGCTTGTGCTGCAT
1 GACTGCATGTGCTGCAT
8308091 G
1 G
8308092 GAGACCAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.23, G:0.29, T:0.34
Consensus pattern (17 bp):
GACTGCATGTGCTGCAT
Found at i:8311593 original size:18 final size:19
Alignment explanation
Indices: 8311562--8311600 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
8311552 GATAATTTAA
*
8311562 TTATTTAAAGTATCA-AAT
1 TTATTAAAAGTATCATAAT
*
8311580 TTATTAAAATTATCATAAT
1 TTATTAAAAGTATCATAAT
8311599 TT
1 TT
8311601 GAGATTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (19 bp):
TTATTAAAAGTATCATAAT
Found at i:8314292 original size:17 final size:17
Alignment explanation
Indices: 8314270--8314302 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8314260 TAACTCAATC
8314270 CATAGTGTATTATAATA
1 CATAGTGTATTATAATA
8314287 CATAGTGTATTATAAT
1 CATAGTGTATTATAAT
8314303 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.42
Consensus pattern (17 bp):
CATAGTGTATTATAATA
Found at i:8314600 original size:53 final size:53
Alignment explanation
Indices: 8314531--8314635 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
8314521 TTGTGGCAAC
* * **
8314531 AATTTTTATTATCATCTTCCAATTGCCAAACCGTATTAAATGTGGCTATTAAA
1 AATTATTATTACCATCTTCCAATTGCCAAACCGTATTAAATGTACCTATTAAA
* * **
8314584 AATTATTATTACCATCTTCCAATTGTCAAGCTTTATTAAATGTACCTATTAA
1 AATTATTATTACCATCTTCCAATTGCCAAACCGTATTAAATGTACCTATTAA
8314636 CTTGAATCTC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (53 bp):
AATTATTATTACCATCTTCCAATTGCCAAACCGTATTAAATGTACCTATTAAA
Found at i:8314656 original size:45 final size:45
Alignment explanation
Indices: 8314605--8314695 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
8314595 CCATCTTCCA
8314605 ATTGTCAAGCTTTATTAAATGTACCTATTAACTTGAATCTCATGC
1 ATTGTCAAGCTTTATTAAATGTACCTATTAACTTGAATCTCATGC
8314650 ATTGTCAAGCTTTATTAAATGTACCTATTAACTTGAATCTCATGC
1 ATTGTCAAGCTTTATTAAATGTACCTATTAACTTGAATCTCATGC
8314695 A
1 A
8314696 AACTAATATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.40
Consensus pattern (45 bp):
ATTGTCAAGCTTTATTAAATGTACCTATTAACTTGAATCTCATGC
Found at i:8315654 original size:36 final size:36
Alignment explanation
Indices: 8315607--8315677 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
8315597 TTTATCTCTC
8315607 TAGATTTCATCATTTCTATTTCCATTGTAATAAGAT
1 TAGATTTCATCATTTCTATTTCCATTGTAATAAGAT
8315643 TAGATTTCATCATTTCTATTTCCATTGTAATAAGA
1 TAGATTTCATCATTTCTATTTCCATTGTAATAAGA
8315678 GTCTTCTGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.46
Consensus pattern (36 bp):
TAGATTTCATCATTTCTATTTCCATTGTAATAAGAT
Found at i:8316410 original size:13 final size:13
Alignment explanation
Indices: 8316392--8316427 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
8316382 GTTTGACAAT
8316392 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
8316405 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
8316418 CTTTTGAAAA
1 CTTTTGAAAA
8316428 ATTTAGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:8317491 original size:21 final size:20
Alignment explanation
Indices: 8317460--8317509 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
8317450 AAATTATTAT
*
8317460 TTTAATTTTTTTAT-A-TTC
1 TTTAATTTTTTTTTAATTTC
*
8317478 TTTAGATTTTTTTTTAATTTT
1 TTTA-ATTTTTTTTTAATTTC
8317499 TTTAATTTTTT
1 TTTAATTTTTT
8317510 GGAATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.15
19 9 0.33
20 8 0.30
21 6 0.22
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTAATTTTTTTTTAATTTC
Found at i:8317500 original size:8 final size:9
Alignment explanation
Indices: 8317459--8317509 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
8317449 AAAATTATTA
8317459 TTTTAATTT
1 TTTTAATTT
8317468 TTTT-ATATT
1 TTTTAAT-TT
*
8317477 CTTTAGATTTTT
1 TTTTA-A--TTT
8317489 TTTTAATTT
1 TTTTAATTT
8317498 TTTTAATTT
1 TTTTAATTT
8317507 TTT
1 TTT
8317510 GGAATTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
8 2 0.06
9 24 0.69
11 2 0.06
12 6 0.17
13 1 0.03
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (9 bp):
TTTTAATTT
Found at i:8317515 original size:19 final size:19
Alignment explanation
Indices: 8317488--8317536 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
8317478 TTTAGATTTT
* * *
8317488 TTTTTAATTTTT-TTAATT
1 TTTTGAATTTTTATAAATA
8317506 TTTTGGAATTTTTATAAATA
1 TTTT-GAATTTTTATAAATA
8317526 TTTTGAATTTT
1 TTTTGAATTTT
8317537 AAAATTTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 14 0.54
20 8 0.31
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (19 bp):
TTTTGAATTTTTATAAATA
Found at i:8317517 original size:29 final size:29
Alignment explanation
Indices: 8317459--8317536 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
8317449 AAAATTATTA
* *
8317459 TTTTAATTTTTTTATATTCTTTAGATTTTT
1 TTTTAATTTTTTTA-ATTTTTTAGAATTTT
*
8317489 TTTTAATTTTTTTAATTTTTTGGAATTTT
1 TTTTAATTTTTTTAATTTTTTAGAATTTT
* * * *
8317518 TATAAATATTTTGAATTTT
1 TTTTAATTTTTTTAATTTT
8317537 AAAATTTGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 27 0.66
30 14 0.34
ACGTcount: A:0.24, C:0.01, G:0.05, T:0.69
Consensus pattern (29 bp):
TTTTAATTTTTTTAATTTTTTAGAATTTT
Found at i:8317834 original size:19 final size:20
Alignment explanation
Indices: 8317799--8317842 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
8317789 CAGAAAATGA
*
8317799 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATAATTTACT
8317819 TTTCTGG-AAATAATTTACT
1 TTTCTGGAAAATAATTTACT
8317838 TTTCT
1 TTTCT
8317843 AGTGTTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:8317943 original size:16 final size:16
Alignment explanation
Indices: 8317922--8317965 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
8317912 AAGCTGTTTT
8317922 TATATATATTAATAAA
1 TATATATATTAATAAA
8317938 TATATATATTAATAAA
1 TATATATATTAATAAA
* *
8317954 TTTATATTTTAA
1 TATATATATTAA
8317966 ATTATTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TATATATATTAATAAA
Found at i:8318912 original size:25 final size:25
Alignment explanation
Indices: 8318874--8318923 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8318864 CTGAGAGAGA
8318874 ATGTTGAATAGGAATTGACAAATAG
1 ATGTTGAATAGGAATTGACAAATAG
*
8318899 ATGTTGAATGGGAATTGACAAATAG
1 ATGTTGAATAGGAATTGACAAATAG
8318924 CATTAACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.26, T:0.28
Consensus pattern (25 bp):
ATGTTGAATAGGAATTGACAAATAG
Found at i:8319483 original size:94 final size:93
Alignment explanation
Indices: 8319361--8319547 Score: 304
Period size: 94 Copynumber: 2.0 Consensus size: 93
8319351 GAGCTTCCAG
*
8319361 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGTTCAAT
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGCTCAAT
*
8319426 CCTAA-TAAAGTAAATAAAGGCGAAGAA
66 CCTAACAAAAGTAAATAAAGGCGAAGAA
* *
8319453 GAAATAATAGAAAAAAAAGATGAATCAACAATTAAACCCAAAATAAAATCTCTAATCAGAGCTCA
1 GAAATAATAG--AAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGCTCA
*
8319518 ATCCTAACAAAAGTAAATAAAGGCTAAGAA
64 ATCCTAACAAAAGTAAATAAAGGCGAAGAA
8319548 AATGATTGTT
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
92 10 0.11
94 57 0.66
95 20 0.23
ACGTcount: A:0.57, C:0.14, G:0.11, T:0.18
Consensus pattern (93 bp):
GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGCTCAAT
CCTAACAAAAGTAAATAAAGGCGAAGAA
Found at i:8323518 original size:3 final size:3
Alignment explanation
Indices: 8323510--8323557 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
8323500 AACACCACAT
8323510 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8323558 CCATAGCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8330858 original size:26 final size:27
Alignment explanation
Indices: 8330829--8330881 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
8330819 TAAAAAAGAC
8330829 CTAATTGTAAAAGTTGT-AAAAACTAT
1 CTAATTGTAAAAGTTGTAAAAAACTAT
8330855 CTAATTGTAAAAGTTGTAAAAAACTAT
1 CTAATTGTAAAAGTTGTAAAAAACTAT
8330882 GTGTAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (27 bp):
CTAATTGTAAAAGTTGTAAAAAACTAT
Found at i:8332351 original size:46 final size:46
Alignment explanation
Indices: 8332293--8332613 Score: 480
Period size: 46 Copynumber: 7.0 Consensus size: 46
8332283 TTTCTGTCAT
* *
8332293 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
*
8332339 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
8332385 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
8332431 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* * * * ** * *
8332477 ATTGCCATGGTATCTGTCAACTATGGTTTTACACATTTCATATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
** *
8332523 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
**
8332569 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
8332614 GAGAGCACAC
Statistics
Matches: 253, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 253 1.00
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:8334776 original size:42 final size:42
Alignment explanation
Indices: 8334716--8334844 Score: 134
Period size: 42 Copynumber: 3.1 Consensus size: 42
8334706 ATATGGCATC
* * * *
8334716 GGCGTC-AGTATGTGATTTCATGTTAGACCATATCTGGGATAT
1 GGCGTCGA-TATGAGATTTCATGTAAGACCATATCTAGGACAT
* *
8334758 GGCGTTGATATGAGATTTCATGTAAGACCATGTCTAGGACAT
1 GGCGTCGATATGAGATTTCATGTAAGACCATATCTAGGACAT
* ** * * *
8334800 GGCGTCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACAT
1 GGCGTCGATATGAGATTTCATGTAAGACCATATCTAGGACAT
8334842 GGC
1 GGC
8334845 ATCGGTACCG
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 73 0.99
43 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (42 bp):
GGCGTCGATATGAGATTTCATGTAAGACCATATCTAGGACAT
Found at i:8334861 original size:90 final size:90
Alignment explanation
Indices: 8334767--8334932 Score: 210
Period size: 90 Copynumber: 1.8 Consensus size: 90
8334757 TGGCGTTGAT
* * * * * * *
8334767 ATGAGATTTCATGTAAGACCATGTCTAGGACATGGCGTCGATATG-AGGTCCCGTGTAAGACCAT
1 ATGAGACTTCATATAAGACAATATCTAGGACATGGCATCGATATGTAGG-CCCATATAAGACCAT
8334831 GTCTGG-GACATGGCATCGGTACCGAC
65 GTC-GGCGACATGGCATCGGTACCGAC
* * *
8334857 ATGAGACTTCGTATAAGACAATATCTGGGATATGGCATCGATATGTAGGCCCATATAAGACCATG
1 ATGAGACTTCATATAAGACAATATCTAGGACATGGCATCGATATGTAGGCCCATATAAGACCATG
8334922 TCGGCGACATG
66 TCGGCGACATG
8334933 ACTTTAGCAT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
89 2 0.03
90 59 0.92
91 3 0.05
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (90 bp):
ATGAGACTTCATATAAGACAATATCTAGGACATGGCATCGATATGTAGGCCCATATAAGACCATG
TCGGCGACATGGCATCGGTACCGAC
Found at i:8336521 original size:18 final size:17
Alignment explanation
Indices: 8336498--8336531 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
8336488 AGTGATTGGC
8336498 TTCAACCAATCTACTATT
1 TTCAACCAATCT-CTATT
8336516 TTCAACCAATCTCTAT
1 TTCAACCAATCTCTAT
8336532 ATTTGCAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.38
Consensus pattern (17 bp):
TTCAACCAATCTCTATT
Found at i:8337741 original size:40 final size:40
Alignment explanation
Indices: 8337693--8337785 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
8337683 CTTTTCAGGT
* * *
8337693 CAAATCCTATCCGCCTTAAGTTACCGTAATGAATCAGGAA
1 CAAATCCTATCCACCTTAAATTACCATAATGAATCAGGAA
* * * *
8337733 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAGGAA
1 CAAATCCTATCCACCTTAAATTACCATAATGAATCAGGAA
8337773 CAAATCCTATCCA
1 CAAATCCTATCCA
8337786 TTTTGAGGTA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.28
Consensus pattern (40 bp):
CAAATCCTATCCACCTTAAATTACCATAATGAATCAGGAA
Found at i:8337802 original size:40 final size:40
Alignment explanation
Indices: 8337722--8337830 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 40
8337712 GTTACCGTAA
* * * *
8337722 TGAATCAGGAATAAATCCTATTCACTTTAAATTACCATAG
1 TGAATCAGGAACAAATCCTATCCATTTTAAAGTACCATAG
* * **
8337762 TGAATCAGGAACAAATCCTATCCATTTTGAGGTATTATAG
1 TGAATCAGGAACAAATCCTATCCATTTTAAAGTACCATAG
*
8337802 TGAATCAGGAACGAATCCTATCCATTTTA
1 TGAATCAGGAACAAATCCTATCCATTTTA
8337831 TATTCTCGAG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (40 bp):
TGAATCAGGAACAAATCCTATCCATTTTAAAGTACCATAG
Found at i:8341224 original size:16 final size:15
Alignment explanation
Indices: 8341188--8341226 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
8341178 GACCTAAATA
*
8341188 TATTCAAAAATAACT
1 TATTCAATAATAACT
*
8341203 TATTCAATAATATCT
1 TATTCAATAATAACT
8341218 CTATTCAAT
1 -TATTCAAT
8341227 TTAGTCCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (15 bp):
TATTCAATAATAACT
Found at i:8342275 original size:21 final size:21
Alignment explanation
Indices: 8342251--8342322 Score: 119
Period size: 21 Copynumber: 3.4 Consensus size: 21
8342241 GAATCGAGTC
8342251 GAGTGAAATGAAATTCGAATT
1 GAGTGAAATGAAATTCGAATT
8342272 GAGTGAAATGAAATTCGAATT
1 GAGTGAAATGAAATTCGAATT
*
8342293 GAGTGAAATGAAATGT-GAATC
1 GAGTGAAATGAAAT-TCGAATT
8342314 GAGTGAAAT
1 GAGTGAAAT
8342323 TAAAAATTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
21 48 0.98
22 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.26
Consensus pattern (21 bp):
GAGTGAAATGAAATTCGAATT
Found at i:8342594 original size:17 final size:18
Alignment explanation
Indices: 8342558--8342596 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8342548 GATTTAGAAT
* *
8342558 TTTTTAAAATTATTATAA
1 TTTTTAAAAATATTAAAA
8342576 TTTTTAAAAATA-TAAAA
1 TTTTTAAAAATATTAAAA
8342593 TTTT
1 TTTT
8342597 GAATTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTTAAAAATATTAAAA
Found at i:8342647 original size:20 final size:20
Alignment explanation
Indices: 8342549--8342656 Score: 114
Period size: 19 Copynumber: 5.3 Consensus size: 20
8342539 TTTATATATG
* *
8342549 ATTTAGAATTTTTTAAAATT
1 ATTTTGAATTTTTAAAAATT
*
8342569 ATTAT-AATTTTTAAAAATAT
1 ATTTTGAATTTTTAAAAAT-T
*
8342589 AAAATTTTGAATTTTTATAAA-T
1 ---ATTTTGAATTTTTAAAAATT
8342611 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
*
8342630 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTAAAAATT
8342650 ATTTTGA
1 ATTTTGA
8342657 TTATTTTGTA
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
18 8 0.11
19 29 0.39
20 21 0.28
22 1 0.01
23 4 0.05
24 11 0.15
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:8345921 original size:11 final size:11
Alignment explanation
Indices: 8345905--8345929 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8345895 TATCATAACA
8345905 CACTTCAATTC
1 CACTTCAATTC
8345916 CACTTCAATTC
1 CACTTCAATTC
8345927 CAC
1 CAC
8345930 ATCATGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.32
Consensus pattern (11 bp):
CACTTCAATTC
Found at i:8346727 original size:12 final size:12
Alignment explanation
Indices: 8346710--8346734 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8346700 ATGAGAAAAC
8346710 CTGTTAATACCA
1 CTGTTAATACCA
8346722 CTGTTAATACCA
1 CTGTTAATACCA
8346734 C
1 C
8346735 ACAATTGCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (12 bp):
CTGTTAATACCA
Found at i:8348518 original size:27 final size:27
Alignment explanation
Indices: 8348480--8348534 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
8348470 TTGGCAAGCC
8348480 ATCCACAAGTTGTAACCTAAGTGGTTT
1 ATCCACAAGTTGTAACCTAAGTGGTTT
**
8348507 ATCCACAAGTTGTAATTTAAGTGGTTT
1 ATCCACAAGTTGTAACCTAAGTGGTTT
8348534 A
1 A
8348535 CTTTCTTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (27 bp):
ATCCACAAGTTGTAACCTAAGTGGTTT
Found at i:8349521 original size:119 final size:119
Alignment explanation
Indices: 8349300--8349538 Score: 426
Period size: 119 Copynumber: 2.0 Consensus size: 119
8349290 TTCATCTTCA
8349300 TCTTCCTTCTAGTTGAACCTCCTTATTTACAGTAAGTGCCTTTGATTCCTTTTTTTTTCTCTGAT
1 TCTTCCTTCTAGTTGAACCTCCTTATTTACAGTAAGTGCCTTTGATTCCTTTTTTTTTCTCTGAT
* *
8349365 TTTTTTAGTTAAAGTTCTTTCACTTCTTTTAACTTTCTTTTCCCCTTTCGTATT
66 TTTTTTAGTTAAAGTTCTTTCACTTCTTTCAACTTTCTTTTCCCATTTCGTATT
*
8349419 TCTTCCTTCTAGTTGAACCTCCTTATTTACAGTAAGTGCCTTTGATTCC-TTTTTTTTCTTTGAT
1 TCTTCCTTCTAGTTGAACCTCCTTATTTACAGTAAGTGCCTTTGATTCCTTTTTTTTTCTCTGAT
*
8349483 TTTTTTAGTTAAAGTTCTTTCACTTCTTTCAACTTTTCTTTTCCTATTTCGTATT
66 TTTTTTAGTTAAAGTTCTTTCACTTCTTTCAAC-TTTCTTTTCCCATTTCGTATT
8349538 T
1 T
8349539 GGATATAAAC
Statistics
Matches: 115, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
118 46 0.40
119 69 0.60
ACGTcount: A:0.15, C:0.21, G:0.08, T:0.55
Consensus pattern (119 bp):
TCTTCCTTCTAGTTGAACCTCCTTATTTACAGTAAGTGCCTTTGATTCCTTTTTTTTTCTCTGAT
TTTTTTAGTTAAAGTTCTTTCACTTCTTTCAACTTTCTTTTCCCATTTCGTATT
Found at i:8349569 original size:21 final size:21
Alignment explanation
Indices: 8349545--8349585 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8349535 ATTTGGATAT
*
8349545 AAACTAGCAAAGCAAATTGTA
1 AAACCAGCAAAGCAAATTGTA
*
8349566 AAACCAGCAAAGTAAATTGT
1 AAACCAGCAAAGCAAATTGT
8349586 GCCTAAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.20
Consensus pattern (21 bp):
AAACCAGCAAAGCAAATTGTA
Found at i:8351790 original size:23 final size:24
Alignment explanation
Indices: 8351764--8351874 Score: 101
Period size: 23 Copynumber: 4.8 Consensus size: 24
8351754 GGACTAACCA
*
8351764 TAGCTCGTAT-GAGCTTACTATTT
1 TAGCTCGAATAGAGCTTACTATTT
* *
8351787 TAGCTC-ATTGGAGCTTACTGA-TT
1 TAGCTCGAATAGAGCTTACT-ATTT
* *
8351810 CAGCTCGAA-AGAGCTTACT-GTT
1 TAGCTCGAATAGAGCTTACTATTT
*
8351832 TAGCTC-AATAGAGCTTACCATTT
1 TAGCTCGAATAGAGCTTACTATTT
8351855 TCAGCTC-AATAGAGCTTACT
1 T-AGCTCGAATAGAGCTTACT
8351875 GTTATTCAGC
Statistics
Matches: 72, Mismatches: 9, Indels: 13
0.77 0.10 0.14
Matches are distributed among these distances:
21 2 0.03
22 17 0.24
23 34 0.47
24 19 0.26
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (24 bp):
TAGCTCGAATAGAGCTTACTATTT
Found at i:8351858 original size:46 final size:46
Alignment explanation
Indices: 8351765--8351900 Score: 125
Period size: 46 Copynumber: 2.9 Consensus size: 46
8351755 GACTAACCAT
* * * * *
8351765 AGCTCGTATGAGCTTACTATTTTAGCTCATTGGAGCTTA-CTGATTC
1 AGCTCGAAAGAGCTTACT-GTTTAGCTCAATAGAGCTTACCTGATTC
*
8351811 AGCTCGAAAGAGCTTACTGTTTAGCTCAATAGAGCTTACCAT-TTTC
1 AGCTCGAAAGAGCTTACTGTTTAGCTCAATAGAGCTTACC-TGATTC
*
8351857 AGCTC-AATAGAGCTTACTGTTATTCAGCTCAGTAAGAGCTTACC
1 AGCTCGAA-AGAGCTTACTG-T-TT-AGCTCAAT-AGAGCTTACC
8351901 GACCATGACC
Statistics
Matches: 76, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
45 19 0.25
46 36 0.47
47 2 0.03
48 2 0.03
49 7 0.09
50 10 0.13
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (46 bp):
AGCTCGAAAGAGCTTACTGTTTAGCTCAATAGAGCTTACCTGATTC
Found at i:8351865 original size:24 final size:23
Alignment explanation
Indices: 8351774--8351900 Score: 93
Period size: 23 Copynumber: 5.4 Consensus size: 23
8351764 TAGCTCGTAT
* * *
8351774 GAGCTTA-CTATTTTAGCTCATTG
1 GAGCTTACCT-TTTCAGCTCAATA
*
8351797 GAGCTTA-CTGATTCAGCTCGAA-A
1 GAGCTTACCT-TTTCAGCTC-AATA
8351820 GAGCTTA-CTGTTT-AGCTCAATA
1 GAGCTTACCT-TTTCAGCTCAATA
8351842 GAGCTTACCATTTTCAGCTCAATA
1 GAGCTTACC-TTTTCAGCTCAATA
* *
8351866 GAGCTTACTGTTATTCAGCTCAGTAA
1 GAGCTTAC-CTT-TTCAGCTCAAT-A
8351892 GAGCTTACC
1 GAGCTTACC
8351901 GACCATGACC
Statistics
Matches: 87, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
21 2 0.02
22 13 0.15
23 32 0.37
24 21 0.24
25 10 0.11
26 9 0.10
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (23 bp):
GAGCTTACCTTTTCAGCTCAATA
Found at i:8355902 original size:23 final size:23
Alignment explanation
Indices: 8355873--8355918 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
8355863 TGGTTTATAC
8355873 TTTTGTGTCATGCTTCTTAACAT
1 TTTTGTGTCATGCTTCTTAACAT
*
8355896 TTTTGTGTCATGCTTCTTTACAT
1 TTTTGTGTCATGCTTCTTAACAT
8355919 GGGGAATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.17, G:0.13, T:0.54
Consensus pattern (23 bp):
TTTTGTGTCATGCTTCTTAACAT
Found at i:8359396 original size:58 final size:58
Alignment explanation
Indices: 8359331--8359467 Score: 170
Period size: 58 Copynumber: 2.3 Consensus size: 58
8359321 ATATTATGTT
* *
8359331 TTTTTATTAATTCGTATTTAAAAATAGTTATACTAAGAATGTTATTAAATTATAT-ATTA
1 TTTTTATTAATT-GTATTTAAAAATAATTATACTAA-AATATTATTAAATTATATCATTA
* **
8359390 -TTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATTATTAAATTATATCATTA
1 TTTTTATT-AATTGTATTTAAAAATAATTATACTAAAATATTATTAAATTATATCATTA
*
8359448 TTTTTATTAAATTATATTTA
1 TTTTTATT-AATTGTATTTA
8359468 GTAATAATCT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
57 17 0.25
58 30 0.43
59 22 0.32
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (58 bp):
TTTTTATTAATTGTATTTAAAAATAATTATACTAAAATATTATTAAATTATATCATTA
Found at i:8359466 original size:59 final size:59
Alignment explanation
Indices: 8359316--8359475 Score: 189
Period size: 59 Copynumber: 2.7 Consensus size: 59
8359306 TTTTTCTAAT
* * * *
8359316 ATTATATATTATGTTTTTTTATTAATTCGTATTTAAAAATAGTTATACTAAGAATGTTATTAA
1 ATTATATATTAT-TTTTATTA--AATT-GTATTTAATAATAATTATACTAAGAATATTATTAA
**
8359379 ATTATATATTA-TTTTATTAAATTGTATTTAATAATAATTATGTTAA-AATATTATTAA
1 ATTATATATTATTTTTATTAAATTGTATTTAATAATAATTATACTAAGAATATTATTAA
* *
8359436 ATTATATCATTATTTTTATTAAATTATATTTAGTAATAAT
1 ATTATAT-ATTATTTTTATTAAATTGTATTTAATAATAAT
8359476 CTTATTAAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
57 17 0.20
58 23 0.26
59 29 0.33
61 7 0.08
63 11 0.13
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (59 bp):
ATTATATATTATTTTTATTAAATTGTATTTAATAATAATTATACTAAGAATATTATTAA
Found at i:8359630 original size:44 final size:46
Alignment explanation
Indices: 8359577--8359672 Score: 126
Period size: 44 Copynumber: 2.1 Consensus size: 46
8359567 TATTACAACA
*
8359577 TCCATTCCATTCAACCAAAC-ATAAGAA-TACT-ATTACAACTCTAT
1 TCCATTCCATTAAACCAAACAAT-AGAATTACTAATTACAACTCTAT
* * *
8359621 TCCATTCCATTAAACTAAACAATTGAATTACTAATTACAGCTCTAT
1 TCCATTCCATTAAACCAAACAATAGAATTACTAATTACAACTCTAT
8359667 TCCATT
1 TCCATT
8359673 ACAGCTATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
44 21 0.47
45 6 0.13
46 18 0.40
ACGTcount: A:0.39, C:0.25, G:0.03, T:0.33
Consensus pattern (46 bp):
TCCATTCCATTAAACCAAACAATAGAATTACTAATTACAACTCTAT
Found at i:8359673 original size:16 final size:16
Alignment explanation
Indices: 8359654--8359718 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 16
8359644 TGAATTACTA
8359654 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* **
8359670 ATTACAGCTATATTTT
1 ATTACAGCTCTATTCC
* *
8359686 ATTACATCTCTATTCA
1 ATTACAGCTCTATTCC
* *
8359702 ATTACAACCCTATTCC
1 ATTACAGCTCTATTCC
8359718 A
1 A
8359719 CTCACCCCAA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:8364850 original size:27 final size:27
Alignment explanation
Indices: 8364820--8365346 Score: 732
Period size: 27 Copynumber: 19.6 Consensus size: 27
8364810 GAATAGGCTT
*
8364820 TAGGGTAGAAATACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8364847 TAGGGTAGAAATACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8364874 TAGGGTAGAATTACCGAAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
8364901 TAGGGTAAAATTACTGAAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
8364928 TAAGGTAGAATTATCGAAATAGCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
8364955 TAGGGTAGAATTATCGCAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8364982 TAAGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8365009 TAGGGTAGAATTACCGAAATACTCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
8365036 TAGGGTAGAATTATCGCAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
8365063 TAGGGTAGAATTATCGCAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8365090 TAAGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8365117 TAGGGTAGAATTACCGGAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
8365144 TAGGGTAGAATTACTGGAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8365171 TAAGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
8365198 TAGGGTAGAATTACCGAAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
8365225 TAGGGTAGAATTATCGCAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
8365252 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* **
8365279 TAAGGTAGAATTACTAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * * *
8365306 TAGGGTGGAGTTACCGAGATA-CCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
8365332 TGGGGTAAAATTACC
1 TAGGGTAGAATTACC
8365347 ATTTTGCCCC
Statistics
Matches: 445, Mismatches: 55, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 15 0.03
27 430 0.97
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:8365993 original size:27 final size:27
Alignment explanation
Indices: 8365910--8365998 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
8365900 ATTCTGTTAA
* * *
8365910 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCAAAATATCTGTA-TCTG
* *
8365937 GTAGCTATGCCACAAATATCTGT-TCTG
1 GTGGCTCTGCCA-AAATATCTGTATCTG
8365964 GTGGCTCTGCCAAAATATCTGTATCTG
1 GTGGCTCTGCCAAAATATCTGTATCTG
*
8365991 GTGACTCT
1 GTGGCTCT
8365999 ATTACAATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 10 0.19
27 35 0.67
28 7 0.13
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCAAAATATCTGTATCTG
Found at i:8366007 original size:27 final size:26
Alignment explanation
Indices: 8365950--8366013 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
8365940 GCTATGCCAC
* *
8365950 AAATATCTGTTCTGGTGGCTCTGCCA
1 AAATATCTGTTCTGGTGACTCTACCA
**
8365976 AAATATCTGTATCTGGTGACTCTATTA
1 AAATATCTGT-TCTGGTGACTCTACCA
*
8366003 CAATATCTGTT
1 AAATATCTGTT
8366014 TTGGCAGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (26 bp):
AAATATCTGTTCTGGTGACTCTACCA
Found at i:8366180 original size:31 final size:31
Alignment explanation
Indices: 8366139--8366210 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 31
8366129 ATTCACATTT
* *
8366139 TGATTTTGATTCTGTTACCTGATAT-TGATTC
1 TGATTCTGATTCTGTCACCTGAT-TCTGATTC
8366170 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATTCTGATTC
8366201 T-AGTTCTGAT
1 TGA-TTCTGAT
8366211 AATGTTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 2 0.05
31 35 0.95
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATTCTGATTC
Found at i:8370610 original size:23 final size:23
Alignment explanation
Indices: 8370575--8370639 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
8370565 TTGCCATGAT
** *
8370575 GGCATTACCGAATATGCCTCATA
1 GGCATTATAGAATATGCCACATA
**
8370598 GGCATTATAGAATACACCACATA
1 GGCATTATAGAATATGCCACATA
* *
8370621 GGCCTCATAGAATATGCCA
1 GGCATTATAGAATATGCCA
8370640 TTAAGGCTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (23 bp):
GGCATTATAGAATATGCCACATA
Found at i:8370756 original size:24 final size:24
Alignment explanation
Indices: 8370711--8370764 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
8370701 TAGACTTTCT
8370711 CAAAAAAAAAAGTGCTTATTTAGAC
1 CAAAAAAAAAAGTGCTTATTTA-AC
8370736 CAAAAAAAAATAGT-CTT-TTTAAC
1 CAAAAAAAAA-AGTGCTTATTTAAC
*
8370759 TAAAAA
1 CAAAAA
8370765 TTCCACTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 7 0.26
24 4 0.15
25 13 0.48
26 3 0.11
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.26
Consensus pattern (24 bp):
CAAAAAAAAAAGTGCTTATTTAAC
Found at i:8383887 original size:17 final size:17
Alignment explanation
Indices: 8383865--8383899 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8383855 AGTAACACAC
8383865 CTTTAATTTTAGGACGA
1 CTTTAATTTTAGGACGA
8383882 CTTTAATTTTAGGACGA
1 CTTTAATTTTAGGACGA
8383899 C
1 C
8383900 CCTTTTTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (17 bp):
CTTTAATTTTAGGACGA
Found at i:8394534 original size:14 final size:14
Alignment explanation
Indices: 8394513--8394589 Score: 58
Period size: 14 Copynumber: 5.9 Consensus size: 14
8394503 CTTACCTAAT
8394513 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTGA
* **
8394527 TTTGCAAGTTGCAA
1 TGTGCAAGTTGTGA
8394541 TGTGCAA---GT--
1 TGTGCAAGTTGTGA
8394550 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTGA
* * *
8394564 TTTGGAAGTT-TAA
1 TGTGCAAGTTGTGA
8394577 TGTGCAAGTTGTG
1 TGTGCAAGTTGTG
8394590 CAAGTTGCAA
Statistics
Matches: 46, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
9 7 0.15
11 1 0.02
12 2 0.04
13 10 0.22
14 26 0.57
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (14 bp):
TGTGCAAGTTGTGA
Found at i:8394586 original size:36 final size:37
Alignment explanation
Indices: 8394512--8394596 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
8394502 GCTTACCTAA
8394512 TTGTGCAAGTTGTGATTTGCAAGTTGCAATGTGCAAG
1 TTGTGCAAGTTGTGATTTGCAAGTTGCAATGTGCAAG
* *
8394549 TTGTGCAAGTTGTGATTTGGAAGTT-TAATGTGCAAG
1 TTGTGCAAGTTGTGATTTGCAAGTTGCAATGTGCAAG
8394585 TTGTGCAAGTTG
1 TTGTGCAAGTTG
8394597 CAATGAAGCT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 22 0.48
37 24 0.52
ACGTcount: A:0.24, C:0.08, G:0.31, T:0.38
Consensus pattern (37 bp):
TTGTGCAAGTTGTGATTTGCAAGTTGCAATGTGCAAG
Found at i:8398520 original size:3 final size:3
Alignment explanation
Indices: 8398512--8398572 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
8398502 ATGTAGTTAT
8398512 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8398560 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
8398573 GTTATAGTCC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8416905 original size:25 final size:24
Alignment explanation
Indices: 8416852--8416913 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
8416842 TAGTTCGTAT
*
8416852 GAGCTTATCGATTCACAGCTCGTGA
1 GAGCTTATCGATACACAGCTC-TGA
*
8416877 GAGCTTATCGATACTCAGCT-TAGA
1 GAGCTTATCGATACACAGCTCT-GA
*
8416901 GGAGCTTACCGAT
1 -GAGCTTATCGAT
8416914 TATCGCTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.03
24 2 0.06
25 29 0.91
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (24 bp):
GAGCTTATCGATACACAGCTCTGA
Found at i:8442767 original size:29 final size:29
Alignment explanation
Indices: 8442703--8442787 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 29
8442693 AAGCATGACT
** * *
8442703 ATGAATGTGATTTGGGCCTTTTGGGCCAT
1 ATGAATGTGATTTGGGCCTAATGGACCAC
**
8442732 ACAAATGTGATTTGGGCCTAATGGACCAC
1 ATGAATGTGATTTGGGCCTAATGGACCAC
* * *
8442761 ATGAATGAGA-TTAGGCCTAGTGGACCA
1 ATGAATGTGATTTGGGCCTAATGGACCA
8442788 TATGCATATA
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 15 0.33
29 30 0.67
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
ATGAATGTGATTTGGGCCTAATGGACCAC
Found at i:8443950 original size:17 final size:18
Alignment explanation
Indices: 8443917--8443950 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8443907 TCCAAGGAAG
8443917 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
8443935 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
8443951 CTTTAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:8450191 original size:20 final size:20
Alignment explanation
Indices: 8450166--8450203 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8450156 GCTTCTAGTC
8450166 CTATTGTATGTGTTGAAGAG
1 CTATTGTATGTGTTGAAGAG
8450186 CTATTGTATGTGTTGAAG
1 CTATTGTATGTGTTGAAG
8450204 TCCAATTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.05, G:0.29, T:0.42
Consensus pattern (20 bp):
CTATTGTATGTGTTGAAGAG
Found at i:8451337 original size:21 final size:22
Alignment explanation
Indices: 8451309--8451372 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
8451299 TAGAAACAGT
*
8451309 ATACGACACATAAAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
** *
8451331 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
8451351 ATACGACACATATAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
8451373 TCGGCAAAGC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
20 2 0.06
21 29 0.88
22 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:8452241 original size:5 final size:5
Alignment explanation
Indices: 8452231--8452263 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
8452221 CTATTTCCCC
8452231 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTT
8452264 CTTTCCCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
CTTTT
Found at i:8452700 original size:26 final size:24
Alignment explanation
Indices: 8452671--8452726 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
8452661 ATAATTATTT
* *
8452671 TAAATTAACTTATCATAATTTATATC
1 TAAATTAA-TTAT-ATAATTAAAATC
8452697 TAAATATTAATTATATAATTAAAATC
1 T-AA-ATTAATTATATAATTAAAATC
8452723 TAAA
1 TAAA
8452727 ATAAAAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
24 1 0.04
25 2 0.08
26 12 0.46
27 6 0.23
28 5 0.19
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAATTAATTATATAATTAAAATC
Found at i:8457963 original size:21 final size:21
Alignment explanation
Indices: 8457939--8457980 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8457929 CTTTTTATTC
8457939 AATTAACT-ATCGAAACTTTAA
1 AATTAACTGA-CGAAACTTTAA
* *
8457960 AATTTATTGACGAAACTTTAA
1 AATTAACTGACGAAACTTTAA
8457981 TACTAACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (21 bp):
AATTAACTGACGAAACTTTAA
Found at i:8459856 original size:29 final size:30
Alignment explanation
Indices: 8459774--8459889 Score: 89
Period size: 31 Copynumber: 3.9 Consensus size: 30
8459764 AATGAGCATG
* *
8459774 ATTGAATCAAAATTAAAGTTTTATATATATA
1 ATTGAATC-AAATCAAAGTTTCATATATATA
* * *
8459805 TTTGAACCATAGTCAAAGTTTCATATATATA
1 ATTGAATCA-AATCAAAGTTTCATATATATA
* * *
8459836 ATTGTATCAAATTAAAG-TTCATATGTCA-A
1 ATTGAATCAAATCAAAGTTTCATATAT-ATA
*
8459865 ATT--ATTAAATCAAAG-TTCATATATA
1 ATTGAATCAAATCAAAGTTTCATATATA
8459890 ATTTATCCCC
Statistics
Matches: 69, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.01
27 18 0.26
29 12 0.17
30 8 0.12
31 30 0.43
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.40
Consensus pattern (30 bp):
ATTGAATCAAATCAAAGTTTCATATATATA
Found at i:8464514 original size:75 final size:73
Alignment explanation
Indices: 8464426--8464597 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 73
8464416 GGTTTTCCTC
** * * * **
8464426 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGAAT-GGATAATACCATACCTACATTTCACAAC
8464490 TCAGTATGG
65 TCAGTATGG
*
8464499 ATTTGATAATACCATACCTACATTTCACAGCTCAGAATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGAATGGATAATACCATACCTACATTTCACAA
*
8464564 TTCAGTATGG
64 CTCAGTATGG
8464574 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
8464598 CTTTGCCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 56 0.64
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGAATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:8464595 original size:35 final size:35
Alignment explanation
Indices: 8464431--8464597 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
8464421 TCCTCATTGA
** *
8464431 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
8464466 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
* *
8464506 AATACCATACCTACATTTCACAGCTCAGAATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
8464541 AATACCATACCTACATTTCACAATTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
8464576 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
8464598 CTTTGCCATG
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
35 85 0.75
39 3 0.03
40 26 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:8478593 original size:15 final size:15
Alignment explanation
Indices: 8478573--8478604 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8478563 ATAGGTTATA
8478573 GTGATAAGGCAGGTG
1 GTGATAAGGCAGGTG
8478588 GTGATAAGGCAGGTG
1 GTGATAAGGCAGGTG
8478603 GT
1 GT
8478605 TAGGCAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.47, T:0.22
Consensus pattern (15 bp):
GTGATAAGGCAGGTG
Found at i:8478891 original size:19 final size:19
Alignment explanation
Indices: 8478867--8478964 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
8478857 AATCTTTAAG
8478867 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8478886 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
8478905 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8478922 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8478941 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
8478962 GAT
1 GAT
8478965 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8478914 original size:36 final size:37
Alignment explanation
Indices: 8478867--8478964 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
8478857 AATCTTTAAG
8478867 GATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATATTAGATAT
*
8478905 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATATTAGATAT
8478941 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
8478965 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATATTAGATAT
Found at i:8484601 original size:10 final size:10
Alignment explanation
Indices: 8484586--8484645 Score: 50
Period size: 11 Copynumber: 5.7 Consensus size: 10
8484576 CTTCTATTTC
*
8484586 AAAAAAAAGG
1 AAAAAAAAAG
8484596 AAAAAAAAAG
1 AAAAAAAAAG
*
8484606 AAAAGAAAAAT
1 AAAA-AAAAAG
8484617 AAATAAATAAA-
1 AAA-AAA-AAAG
*
8484628 AAGAAAAAAG
1 AAAAAAAAAG
8484638 TAAAAAAA
1 -AAAAAAA
8484646 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
9 3 0.07
10 16 0.39
11 18 0.44
12 4 0.10
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:8484602 original size:11 final size:10
Alignment explanation
Indices: 8484586--8484645 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
8484576 CTTCTATTTC
*
8484586 AAAAAAAAGG
1 AAAAAAAAAG
8484596 AAAAAAAAAG
1 AAAAAAAAAG
*
8484606 AAAAGAAAAAT
1 AAAA-AAAAAG
8484617 AAATAAATAAA-
1 AAA-AAA-AAAG
*
8484628 AAGAAAAAAG
1 AAAAAAAAAG
*
8484638 TAAAAAAA
1 AAAAAAAA
8484646 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 3 0.07
10 22 0.54
11 12 0.29
12 4 0.10
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:8485650 original size:41 final size:41
Alignment explanation
Indices: 8485593--8486114 Score: 316
Period size: 41 Copynumber: 12.6 Consensus size: 41
8485583 CAAAATTCAG
* *
8485593 CGCCTTAATCCCCTAAGCAATGGTGGAGCAGATCGAAGACT
1 CGCCTTAATCCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * * *
8485634 CGCCTTAATCCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTT
1 CGCCTTAATCCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT
* *
8485674 GCAGATCTT-ATCTCCCTAAGCAGTAGTGGAGCAGATCTAAGACT
1 -C-G-CCTTAATC-CCCTAAGCAGTAGTGGAGCAGATCGAAGACT
*
8485718 CGCCTTAATCCCCTAAACAGTAGTGGAGCAGATCGAAGACT
1 CGCCTTAATCCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * * *
8485759 CGCCTTAATCCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTT
1 CGCCTTAATCCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT
*
8485799 GCAGATCTT-ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
1 -C-G-CCTTAATC-CCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * * *
8485843 CGCCTTAATCCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTT
1 CGCCTTAATCCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT
*
8485883 GCAGATCTT-ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
1 -C-G-CCTTAATC-CCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * * *
8485927 CGCCTTAATCCCTTAAGCAGTAG-GGTAACAGGTTCGCAGA-T
1 CGCCTTAATCCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACT
* *
8485968 ---CTT-ATCTCCCTAAGCAGTAGCGGAGCAGATCAACGACGACT
1 CGCCTTAATC-CCCTAAGCAGTAGTGGAGCAGAT---CGAAGACT
** * * *
8486009 CGCCTTAATCCCCTAAGCAGTAG-GGTAATAGGT-TAA-ATTT
1 CGCCTTAATCCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT
* *
8486049 GCAGATCTT-ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
1 -C-G-CCTTAATC-CCCTAAGCAGTAGTGGAGCAGATCGAAGACT
*
8486093 CACCTTAAT-CCCTAAGCAGTAG
1 CGCCTTAATCCCCTAAGCAGTAG
8486115 GGTAACAGGT
Statistics
Matches: 371, Mismatches: 58, Indels: 105
0.69 0.11 0.20
Matches are distributed among these distances:
37 5 0.01
38 18 0.05
39 6 0.02
40 36 0.10
41 133 0.36
42 37 0.10
43 89 0.24
44 40 0.11
45 7 0.02
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (41 bp):
CGCCTTAATCCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
Found at i:8485815 original size:125 final size:125
Alignment explanation
Indices: 8485593--8486114 Score: 574
Period size: 125 Copynumber: 4.2 Consensus size: 125
8485583 CAAAATTCAG
* *
8485593 CGCCTTAATCCCCTAAGCAATGGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGG
1 CGCCTTAATCCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGG
*
8485658 GTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCTAAGACT
66 GTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
*
8485718 CGCCTTAATCCCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGG
1 CGCCTTAATCCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGG
8485783 GTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
66 GTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * * * *
8485843 CGCCTTAATCCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCTCCCTAAGC
1 CGCCTTAATCCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC-CCCTAAGC
* * * * * * * *
8485904 AGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC-CCTTAAGCAGTAG-GGTAACAGGTTC
60 AGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCTCCCTAAGCAGTAGTGG-AGCA-GATC
*
8485962 GCAGA-T
119 GAAGACT
* *
8485968 ---CTT-ATCTCCCTAAGCAGTAGCGGAGCAGATCAACGACGACTCGCCTTAATCCCCTAAGCAG
1 CGCCTTAATC-CCCTAAGCAGTAGTGGAGCAGAT---CGAAGACTCGCCTTAATCCCCTAAGCAG
* *
8486029 TAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
62 TAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
*
8486093 CACCTTAAT-CCCTAAGCAGTAG
1 CGCCTTAATCCCCTAAGCAGTAG
8486115 GGTAACAGGT
Statistics
Matches: 329, Mismatches: 36, Indels: 62
0.77 0.08 0.15
Matches are distributed among these distances:
121 4 0.01
122 26 0.08
123 24 0.07
124 22 0.07
125 187 0.57
126 19 0.06
127 36 0.11
128 8 0.02
129 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (125 bp):
CGCCTTAATCCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGG
GTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
Found at i:8485816 original size:84 final size:84
Alignment explanation
Indices: 8485728--8486202 Score: 723
Period size: 84 Copynumber: 5.7 Consensus size: 84
8485718 CGCCTTAATC
*
8485728 CCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
8485793 AAATTTGCAGATCTTATCT
66 AAATTTGCAGATCTTATCT
8485812 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
8485877 AAATTTGCAGATCTTATCT
66 AAATTTGCAGATCTTATCT
*
8485896 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCTTAAGCAGTAGGGTAACAGG--
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
*
8485959 ---TTCGCAGATCTTATCT
66 AAATTTGCAGATCTTATCT
* * *
8485975 CCCTAAGCAGTAGCGGAGCAGATCAACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAG
1 CCCTAAGCAGTAGTGGAGCAGAT---CGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAG
8486040 GTTAAATTTGCAGATCTTATCT
63 GTTAAATTTGCAGATCTTATCT
* *
8486062 CCCTAAGCAGTAGTGGAGCAGATCGAAGACCCACCTTAAT-CCCTAAGCAGTAGGGTAACAGGTT
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
8486126 AAATTTGCAGATCTTA--T
66 AAATTTGCAGATCTTATCT
* ** * *
8486143 CCCTAAGTAGTAGCAGAGCAGATCGAAGACGATGCACCTTAACCCCCTAAGCAGTAGGGT
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGAC--T-CGCCTTAATCCCCTAAGCAGTAGGGT
8486203 CCAAGATGAT
Statistics
Matches: 361, Mismatches: 18, Indels: 23
0.90 0.04 0.06
Matches are distributed among these distances:
79 37 0.10
81 28 0.08
82 37 0.10
83 39 0.11
84 167 0.46
85 16 0.04
87 37 0.10
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (84 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
AAATTTGCAGATCTTATCT
Found at i:8486034 original size:250 final size:246
Alignment explanation
Indices: 8485728--8486202 Score: 765
Period size: 250 Copynumber: 1.9 Consensus size: 246
8485718 CGCCTTAATC
*
8485728 CCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
1 CCCTAAACAGTAGCGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
* *
8485793 AAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTA
66 AAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCACCTTAAT-CCCTA
**
8485858 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
130 AGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAGCAGAGCAGATCGAA
* * *
8485923 GAC-T-CGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCT
193 GACATGCACCTTAACCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCT
* * *
8485975 CCCTAAGCAGTAGCGGAGCAGATCAACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAG
1 CCCTAAACAGTAGCGGAGCAGAT---CGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAG
8486040 GTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCACCTTAATCCC
63 GTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCACCTTAATCCC
*
8486105 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCCCTAAGTAGTAGCAGAGCAGATCGAA
128 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCCCTAAGCAGTAGCAGAGCAGATCGAA
8486170 GACGATGCACCTTAACCCCCTAAGCAGTAGGGT
193 GAC-ATGCACCTTAACCCCCTAAGCAGTAGGGT
8486203 CCAAGATGAT
Statistics
Matches: 210, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
247 49 0.23
249 41 0.20
250 120 0.57
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (246 bp):
CCCTAAACAGTAGCGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
AAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCACCTTAATCCCTAA
GCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCCCTAAGCAGTAGCAGAGCAGATCGAAGAC
ATGCACCTTAACCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCT
Found at i:8486074 original size:209 final size:207
Alignment explanation
Indices: 8485595--8486031 Score: 557
Period size: 209 Copynumber: 2.1 Consensus size: 207
8485585 AAATTCAGCG
* * *
8485595 CCTTAATC-CCCTAAGCAATGGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGG
1 CCTT-ATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGG
*
8485659 TAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCTAAGACTCGCCTT
65 TAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTT
*
8485724 AATCCCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACA
130 AATCCCCTAAACAGTAGTGGAACAGATCGAAGACT--CCTTAATCCCCTAAGCAGTAGGGTAACA
* * ***
8485789 GGTTAAATTTGCAGA
193 GATCAAAGACGCAGA
* *
8485804 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGT
1 CCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGT
8485869 AACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTA
66 AACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTA
* * * * *
8485934 ATCCCTTAAGCAGTAG-GGTAACAGGTTCGCAGA-T-CTT-ATCTCCCTAAGCAGTAGCGG-AGC
131 ATCCCCTAAACAGTAGTGG-AACA-GATCGAAGACTCCTTAATC-CCCTAAGCAGTAG-GGTAAC
* *
8485994 AGATCAACGACGACTCG-
192 AGATCAAAGACG-C-AGA
8486011 CCTTAATC-CCCTAAGCAGTAG
1 CCTT-ATCTCCCTAAGCAGTAG
8486032 GGTAATAGGT
Statistics
Matches: 202, Mismatches: 18, Indels: 18
0.85 0.08 0.08
Matches are distributed among these distances:
205 3 0.01
206 24 0.12
207 19 0.09
208 9 0.04
209 140 0.69
210 7 0.03
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.24
Consensus pattern (207 bp):
CCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGT
AACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTA
ATCCCCTAAACAGTAGTGGAACAGATCGAAGACTCCTTAATCCCCTAAGCAGTAGGGTAACAGAT
CAAAGACGCAGA
Found at i:8486971 original size:19 final size:19
Alignment explanation
Indices: 8486947--8487044 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
8486937 AATCTTTAAG
8486947 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8486966 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
8486985 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8487002 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8487021 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
8487042 GAT
1 GAT
8487045 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8486994 original size:36 final size:37
Alignment explanation
Indices: 8486947--8487044 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
8486937 AATCTTTAAG
8486947 GATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATATTAGATAT
*
8486985 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATATTAGATAT
8487021 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
8487045 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATATTAGATAT
Found at i:8489939 original size:19 final size:17
Alignment explanation
Indices: 8489915--8489949 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
8489905 AAACTTAAAA
8489915 AAACATCAATATGAATCTC
1 AAACATC-ATAT-AATCTC
8489934 AAACATCATATAATCT
1 AAACATCATATAATCT
8489950 AAAATTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.29
Consensus pattern (17 bp):
AAACATCATATAATCTC
Found at i:8490762 original size:18 final size:19
Alignment explanation
Indices: 8490715--8490763 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
8490705 TCCCGTGAAA
* *
8490715 CTGCGAGCTC-ACCTAAAG
1 CTGCAAGCTCAACCAAAAG
8490733 CTGCAAGCTCAACCAAAAG
1 CTGCAAGCTCAACCAAAAG
8490752 -TGCAAGCTCAAC
1 CTGCAAGCTCAAC
8490764 TCAAGTTGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 21 0.75
19 7 0.25
ACGTcount: A:0.35, C:0.33, G:0.18, T:0.14
Consensus pattern (19 bp):
CTGCAAGCTCAACCAAAAG
Found at i:8492765 original size:40 final size:39
Alignment explanation
Indices: 8492680--8492772 Score: 105
Period size: 40 Copynumber: 2.4 Consensus size: 39
8492670 CGATTATGTT
* **
8492680 TGGCACTTAGTGTGCATTTGAAATAGCTTCGACTATATA
1 TGGCACTTAGTGTGCAATCAAAATAGCTTCGACTATATA
** * * *
8492719 AAGCACTTAGTGTGCAAATCAAAATAGCTTCGGCTGTATG
1 TGGCACTTAGTGTGC-AATCAAAATAGCTTCGACTATATA
8492759 TGGCACTTAGTGTG
1 TGGCACTTAGTGTG
8492773 TGAGATTGAA
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
39 13 0.30
40 30 0.70
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (39 bp):
TGGCACTTAGTGTGCAATCAAAATAGCTTCGACTATATA
Found at i:8494269 original size:53 final size:53
Alignment explanation
Indices: 8494212--8494315 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 53
8494202 ATTGTTACTA
* * * *
8494212 TTTCGGATTTGTTCCGATGAGGTACTCCGTGTATCGTACTGTTACTGTTACCG
1 TTTCGGATTTGTTCCGATAAAGTACTCCATGTATCGTACTGCTACTGTTACCG
* **
8494265 TTTCGGATTTGTTCTGATAAAGTACTTTATGTATCGTACTGCTACTGTTAC
1 TTTCGGATTTGTTCCGATAAAGTACTCCATGTATCGTACTGCTACTGTTAC
8494316 TGTTACTGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (53 bp):
TTTCGGATTTGTTCCGATAAAGTACTCCATGTATCGTACTGCTACTGTTACCG
Found at i:8494463 original size:19 final size:19
Alignment explanation
Indices: 8494441--8494492 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
8494431 AAAGATCGAC
8494441 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAATTTAAT
* * *
8494460 TGTTACTGTAT-ATCTGAT
1 TGTTACTGAATAATTTAAT
*
8494478 TTTTACTGAATAATT
1 TGTTACTGAATAATT
8494493 GACTATTACT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.50
Consensus pattern (19 bp):
TGTTACTGAATAATTTAAT
Found at i:8494551 original size:18 final size:18
Alignment explanation
Indices: 8494525--8494632 Score: 101
Period size: 18 Copynumber: 5.9 Consensus size: 18
8494515 AGTTGAATAA
*
8494525 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTGT
* *
8494543 TATTGAATAATTGATTGT
1 TACTGAATAACTGATTGT
* *
8494561 TACCGAATAACTGACTGT
1 TACTGAATAACTGATTGT
* *
8494579 TACTGAATAAATAATTGT
1 TACTGAATAACTGATTGT
* *
8494597 T-CTGATTGACTGATTGT
1 TACTGAATAACTGATTGT
*
8494614 TAATGAATATTACTGATTG
1 TACTGAATA--ACTGATTG
8494633 ATTAATTGCT
Statistics
Matches: 69, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
17 13 0.19
18 48 0.70
20 8 0.12
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:8499074 original size:39 final size:39
Alignment explanation
Indices: 8499030--8499107 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
8499020 TATATTTAGA
8499030 ATTTCGTCCATCCACTTTTATTTAAGAAATTTAGTTCTT
1 ATTTCGTCCATCCACTTTTATTTAAGAAATTTAGTTCTT
8499069 ATTTCGTCCATCCACTTTTATTTAAGAAATTTAGTTCTT
1 ATTTCGTCCATCCACTTTTATTTAAGAAATTTAGTTCTT
8499108 TTTTAAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.49
Consensus pattern (39 bp):
ATTTCGTCCATCCACTTTTATTTAAGAAATTTAGTTCTT
Found at i:8502765 original size:19 final size:19
Alignment explanation
Indices: 8502741--8502778 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8502731 TATATTATAA
8502741 CATAACTTAAAAGCCATGT
1 CATAACTTAAAAGCCATGT
8502760 CATAACTTAAAAGCCATGT
1 CATAACTTAAAAGCCATGT
8502779 TTATTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (19 bp):
CATAACTTAAAAGCCATGT
Found at i:8503442 original size:26 final size:26
Alignment explanation
Indices: 8503406--8503456 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
8503396 CGTCCCGTTT
8503406 CGTTTTACATCGTCCGAGGTAAGTTC
1 CGTTTTACATCGTCCGAGGTAAGTTC
*
8503432 CGTTTTACATCGTTCGAGGTAAGTT
1 CGTTTTACATCGTCCGAGGTAAGTT
8503457 TATAAGCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
CGTTTTACATCGTCCGAGGTAAGTTC
Found at i:8507147 original size:28 final size:28
Alignment explanation
Indices: 8507094--8507254 Score: 94
Period size: 28 Copynumber: 5.6 Consensus size: 28
8507084 TCTCGAAGTT
* * *
8507094 TCGCACACTCAGTGCCTTCAC-GGATGTA
1 TCGCACACTAAGTGCCATC-CTAGATGTA
* *
8507122 TCGCATACTAAGTGCCATCCTAGATGTC
1 TCGCACACTAAGTGCCATCCTAGATGTA
** * * * *
8507150 TCAAACACTAAGTGTTCATTTCTGGATGTT
1 TCGCACACTAAGTG-CCA-TCCTAGATGTA
*
8507180 TCGCACACTAAGTGCCATCCTCA-AT-AA
1 TCGCACACTAAGTGCCATCCT-AGATGTA
* * * * *
8507207 TTCACACACTAAGTGTCATTTCTGGATGTT
1 -TCGCACACTAAGTGCCA-TCCTAGATGTA
8507237 TCGCACACTAAGTGCCAT
1 TCGCACACTAAGTGCCAT
8507255 TTTCACAATC
Statistics
Matches: 98, Mismatches: 27, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
27 1 0.01
28 53 0.54
29 24 0.24
30 20 0.20
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATCCTAGATGTA
Found at i:8507247 original size:57 final size:58
Alignment explanation
Indices: 8507115--8507254 Score: 205
Period size: 58 Copynumber: 2.4 Consensus size: 58
8507105 GTGCCTTCAC
* * *
8507115 GGATGTATCGCATACTAAGTGCCATCCTAGATGTCTCAAACACTAAGTGTTCATTTCT
1 GGATGTTTCGCACACTAAGTGCCATCCTAGATATCTCAAACACTAAGTGTTCATTTCT
*
8507173 GGATGTTTCGCACACTAAGTGCCATCCTCA-ATAAT-TCACACACTAAGTG-TCATTTCT
1 GGATGTTTCGCACACTAAGTGCCATCCT-AGAT-ATCTCAAACACTAAGTGTTCATTTCT
8507230 GGATGTTTCGCACACTAAGTGCCAT
1 GGATGTTTCGCACACTAAGTGCCAT
8507255 TTTCACAATC
Statistics
Matches: 76, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
57 33 0.43
58 41 0.54
59 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (58 bp):
GGATGTTTCGCACACTAAGTGCCATCCTAGATATCTCAAACACTAAGTGTTCATTTCT
Found at i:8510675 original size:53 final size:50
Alignment explanation
Indices: 8510596--8510737 Score: 134
Period size: 53 Copynumber: 2.9 Consensus size: 50
8510586 GATGGAAAAG
*
8510596 ATGTGAT-ATGT-ACTTTCGTATAAGACCATAGCTGGGCTATGGCATCAGT
1 ATGTGATAATGTGA-TTCCGTATAAGACCATAGCTGGGCTATGGCATCAGT
* * * *
8510645 ACAATGTGATAATGTGATTCCGTATAAGACCATATCTAGGATATGGCATCGGT
1 ---ATGTGATAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCAGT
* * *
8510698 A--TGA-AATGTGA-TCTGTATAAGACCATGGCAGGGCTATGGC
1 ATGTGATAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGC
8510738 TTCAATGTGT
Statistics
Matches: 77, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
46 23 0.30
47 7 0.09
48 3 0.04
50 1 0.01
52 7 0.09
53 35 0.45
54 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (50 bp):
ATGTGATAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCAGT
Found at i:8516150 original size:47 final size:47
Alignment explanation
Indices: 8516041--8516151 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
8516031 CCGGGATAAG
*
8516041 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACAGTATAGTA
* * *
8516088 CACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACAGTA-TAGTA
8516135 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
8516152 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACAGTATAGTA
Found at i:8531148 original size:13 final size:12
Alignment explanation
Indices: 8531105--8531147 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
8531095 CAATAAGAAC
8531105 AAAAATTAACAT
1 AAAAATTAACAT
* *
8531117 AAAAATATAAAAGG
1 AAAAAT-TAACA-T
8531131 AAAAATTAACAT
1 AAAAATTAACAT
8531143 AAAAA
1 AAAAA
8531148 AATTTCAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 11 0.44
13 8 0.32
14 6 0.24
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.19
Consensus pattern (12 bp):
AAAAATTAACAT
Found at i:8539097 original size:29 final size:30
Alignment explanation
Indices: 8539050--8539117 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
8539040 TGGCCCAAGA
* *
8539050 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
8539080 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
8539110 GCAAATAT
1 GTAAATAT
8539118 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Done.