Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 340 of 438
Found at i:106353182 original size:12 final size:12
Alignment explanation
Indices: 106353145--106353198 Score: 67
Period size: 12 Copynumber: 4.7 Consensus size: 12
106353135 TAACAACAAA
106353145 ATATTCATAGAC
1 ATATTCATAGAC
* *
106353157 ATGTTCACA-A-
1 ATATTCATAGAC
106353167 ATATTCATAGAC
1 ATATTCATAGAC
106353179 ATATTCATAGAC
1 ATATTCATAGAC
*
106353191 ATGTTCAT
1 ATATTCAT
106353199 CACAAGAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 7 0.20
11 2 0.06
12 26 0.74
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (12 bp):
ATATTCATAGAC
Found at i:106354225 original size:27 final size:27
Alignment explanation
Indices: 106354174--106354225 Score: 63
Period size: 25 Copynumber: 1.9 Consensus size: 27
106354164 AATGCACAAA
*
106354174 TTTGAAAATAATTTCTTGGAAAACACC
1 TTTGAAAATAATTTCTTAGAAAACACC
106354201 TTTG-AAA-AATTTCTTCAGAATAACA
1 TTTGAAAATAATTTCTT-AGAA-AACA
106354226 TTCTTCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 8 0.36
26 6 0.27
27 8 0.36
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
TTTGAAAATAATTTCTTAGAAAACACC
Found at i:106356717 original size:6 final size:6
Alignment explanation
Indices: 106356687--106356857 Score: 91
Period size: 6 Copynumber: 27.8 Consensus size: 6
106356677 AAGAAACATT
* * *
106356687 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
106356734 GTGACAGA ATCAAA ATCAAA ATCAGA ATTAGA ATTAGGTA A-CAGA ATCAAA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * * *
106356785 ATCGGT GTCAGGTA AT-AGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
106356836 A-CAGA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
106356858 GTAACAAAAT
Statistics
Matches: 126, Mismatches: 25, Indels: 28
0.70 0.14 0.16
Matches are distributed among these distances:
5 9 0.07
6 102 0.81
7 9 0.07
8 6 0.05
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:106356757 original size:37 final size:37
Alignment explanation
Indices: 106356710--106356787 Score: 129
Period size: 37 Copynumber: 2.1 Consensus size: 37
106356700 TCAAAATGAG
* *
106356710 AATCAGAATCAGAATCAGAATTAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
*
106356747 AATCAAAATCAGAATTAGAATTAGGTAACAGAATCAA
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
106356784 AATC
1 AATC
106356788 GGTGTCAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.21
Consensus pattern (37 bp):
AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
Found at i:106356813 original size:62 final size:62
Alignment explanation
Indices: 106356713--106356861 Score: 190
Period size: 62 Copynumber: 2.4 Consensus size: 62
106356703 AAATGAGAAT
* * * * * * *
106356713 CAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAAAATCAGAATTAGAATTAGGTAA
1 CAGAATCAAAATCAGTATCAGGTAATAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
* * * *
106356775 CAGAATCAAAATCGGTGTCAGGTAATAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAAAATCAGTATCAGGTAATAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
*
106356837 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGTATCAGGTAA
106356862 CAAAATTAGA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 73 1.00
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.20
Consensus pattern (62 bp):
CAGAATCAAAATCAGTATCAGGTAATAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
Found at i:106356816 original size:37 final size:37
Alignment explanation
Indices: 106356775--106356856 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 37
106356765 AATTAGGTAA
* ** *
106356775 CAGAATCAAAATCGGTGTCAGGTAATAGAATCAGAAT
1 CAGAATCAAAATCAGAATCAGGTAACAGAATCAGAAT
* * *
106356812 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAAAATCAGAATCAGGTAACAGAATCAGAAT
*
106356849 CAGTATCA
1 CAGAATCA
106356857 GGTAACAAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.20
Consensus pattern (37 bp):
CAGAATCAAAATCAGAATCAGGTAACAGAATCAGAAT
Found at i:106356841 original size:25 final size:25
Alignment explanation
Indices: 106356812--106356863 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
106356802 GAATCAGAAT
*
106356812 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAACCAGAATCAGAATCAGGTAA
* *
106356837 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAACCAGAATCAGAATCAGGTAA
106356862 CA
1 CA
106356864 AAATTAGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.17
Consensus pattern (25 bp):
CAGAACCAGAATCAGAATCAGGTAA
Found at i:106356857 original size:31 final size:32
Alignment explanation
Indices: 106356708--106356857 Score: 121
Period size: 31 Copynumber: 4.6 Consensus size: 32
106356698 AATCAAAATG
106356708 AGAATCAGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATTAGGT-----AATC
* * *
106356745 AAAATCAAAATCAGAATTAGAATTAGGTAA-C
1 AGAATCAGAATCAGAATCAGAATTAGGTAATC
* * **
106356776 AGAATCAAAATCGGTGTCAGGTAA-TA-G-AATC
1 AGAATCAGAATCAGAATCA-G-AATTAGGTAATC
*
106356807 AGAATCAGAACCAGAATCAGAATTAGGTAA-C
1 AGAATCAGAATCAGAATCAGAATTAGGTAATC
*
106356838 AGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
106356858 GTAACAAAAT
Statistics
Matches: 92, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
29 2 0.02
30 5 0.05
31 51 0.55
32 7 0.08
33 2 0.02
37 25 0.27
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.20
Consensus pattern (32 bp):
AGAATCAGAATCAGAATCAGAATTAGGTAATC
Found at i:106356872 original size:25 final size:25
Alignment explanation
Indices: 106356818--106356879 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
106356808 GAATCAGAAC
* *
106356818 CAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAAAAT
*
106356843 CAGAATCAGTATCAGGTAACAAAAT
1 CAGAATCAGAATCAGGTAACAAAAT
* *
106356868 TAGAATTAGAAT
1 CAGAATCAGAAT
106356880 GTGAATGCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAAAAT
Found at i:106357463 original size:54 final size:54
Alignment explanation
Indices: 106357405--106357796 Score: 389
Period size: 54 Copynumber: 7.5 Consensus size: 54
106357395 GGGTAAAATG
* * * * *
106357405 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCA
* *
106357459 GTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACA-AGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGA-GGTATTTCA
* ** * **
106357512 G-----GTA----ACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCA
* * * *
106357557 GTATTTCTACCCTAAAAGGGTATTTCGGTATTTCTACCCTACA-AGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGA-GGTATTTCA
** *
106357611 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAG-GGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCA
* * * * * * *
106357664 GTATTTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTATAGGGGTTTTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCA
* *
106357718 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACA-AGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGA-GGTATTTCA
*
106357772 GTAATTCTACCTTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
106357797 TAGTAATTTT
Statistics
Matches: 275, Mismatches: 47, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
44 35 0.13
45 1 0.00
48 2 0.01
50 2 0.01
53 48 0.17
54 187 0.68
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCA
Found at i:106357497 original size:81 final size:81
Alignment explanation
Indices: 106357403--106357797 Score: 519
Period size: 81 Copynumber: 5.0 Consensus size: 81
106357393 AAGGGTAAAA
* * * *
106357403 TGGTAATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTAC-AGAGGTATTTCAGTAATTC
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAG-GGTATTTCAGTAATTC
106357466 TACCCTACAGGGGTATTT
64 TACCCTACAGGGGTATTT
* *
106357484 TGGTATTTCTACCCTACAAGGGTATTTCGG------TA----ACAGGGGTATTTTAGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
106357539 CCCTACAGGGGTATTT
66 CCCTACAGGGGTATTT
*
106357555 TGGTATTTCTACCCTAAAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
106357620 CCCTACAGGGGTATTT
66 CCCTACAGGGGTATTT
* * * *
106357636 TAGTAATTCTACCCTAC-AGGGTATTTCGGTATTTCTACCCTATAAGGGTATTTCGGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
* *
106357700 CCCTATAGGGGTTTTT
66 CCCTACAGGGGTATTT
* * * *
106357716 TAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
*
106357781 CCTTACAGGGGTATTT
66 CCCTACAGGGGTATTT
106357797 T
1 T
106357798 AGTAATTTTG
Statistics
Matches: 281, Mismatches: 20, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
71 64 0.23
72 1 0.00
75 2 0.01
77 2 0.01
80 80 0.28
81 132 0.47
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
CCCTACAGGGGTATTT
Found at i:106357515 original size:27 final size:27
Alignment explanation
Indices: 106357404--106357516 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
106357394 AGGGTAAAAT
* * *
106357404 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
106357431 GATAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* * *
106357458 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
106357485 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
106357512 GGTAA
1 GGTAA
106357517 CAGGGGTATT
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
26 2 0.03
27 68 0.96
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:106357538 original size:44 final size:44
Alignment explanation
Indices: 106357472--106357559 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
106357462 ATTCTACCCT
* *
106357472 ACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTA
1 ACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTA
* *
106357516 ACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTTGGTA
1 ACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTA
106357560 TTTCTACCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (44 bp):
ACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTA
Found at i:106357591 original size:98 final size:101
Alignment explanation
Indices: 106357433--106357796 Score: 376
Period size: 107 Copynumber: 3.5 Consensus size: 101
106357423 GGTATCTCGA
* * * * * *
106357433 TAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTTCGGTATTTCTACCC
*
106357498 TACAAGGGTATTTC-G-GTA-ACAGGGGTATTTTAG
66 TACAAGGGTATTTCAGTCTACACAGGGGTATTTTAG
*
106357531 TAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTAAAAGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTTCGGTATTTCTACCC
106357596 TACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAG
66 TACAAGGGTATTTCAG----TCTA--C-ACAGGGGTATTTTAG
* *
106357639 TAATTCTACCCTACA-GGGTATTTCGGTATTTCTACCCTATAAGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTTCGGTATTTCTACCC
* * * * **
106357703 TATAGGGGTTTTTTAGTAATTCTACCCTACAGGGGTATTTCGG
66 TACAAGGGTATTTCAG----TCTA--C-ACAGGGGTATTTTAG
* * * * * *
106357746 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTT
106357797 TAGTAATTTT
Statistics
Matches: 233, Mismatches: 22, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
98 72 0.31
99 1 0.00
104 2 0.01
107 97 0.42
108 61 0.26
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (101 bp):
TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTTCGGTATTTCTACCC
TACAAGGGTATTTCAGTCTACACAGGGGTATTTTAG
Found at i:106357804 original size:27 final size:27
Alignment explanation
Indices: 106357516--106357796 Score: 366
Period size: 27 Copynumber: 10.4 Consensus size: 27
106357506 TATTTCGGTA
**
106357516 ACAGGGGTATTTTAGTAATTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* *
106357543 ACAGGGGTATTTTGGTATTTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* * *
106357570 AAAAGGGTATTTCGGTATTTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* *
106357597 ACAAGGGTATTTCAGTAATTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
**
106357624 ACAGGGGTATTTTAGTAATTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
*
106357651 ACA-GGGTATTTCGGTATTTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* *
106357677 ATAAGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* * **
106357704 ATAGGGGTTTTTTAGTAATTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
*
106357731 ACAGGGGTATTTCGGTATTTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* *
106357758 ACAAGGGTATTTCGGTAATTCTACCTT
1 ACAGGGGTATTTCGGTAATTCTACCCT
106357785 ACAGGGGTATTT
1 ACAGGGGTATTT
106357797 TAGTAATTTT
Statistics
Matches: 225, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 22 0.10
27 203 0.90
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
ACAGGGGTATTTCGGTAATTCTACCCT
Found at i:106357873 original size:27 final size:27
Alignment explanation
Indices: 106357853--106357918 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
106357843 GGGTACTTTG
*
106357853 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCAAGGGTATTTCA
*
106357880 ATAATTTTACAAGTCAAGGGTATTTCA
1 GTAATTTTACAAGTCAAGGGTATTTCA
106357907 GTAATTTTACAA
1 GTAATTTTACAA
106357919 ACCAGGGGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAGTCAAGGGTATTTCA
Found at i:106357927 original size:27 final size:27
Alignment explanation
Indices: 106357853--106357940 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
106357843 GGGTACTTTG
106357853 GTAATTTTACAAGTC-GAGGGTATTTCA
1 GTAATTTTACAAGTCAG-GGGTATTTCA
* *
106357880 ATAATTTTACAAGTCAAGGGTATTTCA
1 GTAATTTTACAAGTCAGGGGTATTTCA
** **
106357907 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAGTCAGGGGTATTTCA
106357934 GTAATTT
1 GTAATTT
106357941 GGTAAACTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAGTCAGGGGTATTTCA
Found at i:106364539 original size:30 final size:30
Alignment explanation
Indices: 106364505--106364565 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
106364495 TCCTTAACTC
106364505 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
106364535 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
106364565 A
1 A
106364566 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:106372354 original size:27 final size:27
Alignment explanation
Indices: 106372324--106372722 Score: 437
Period size: 27 Copynumber: 14.7 Consensus size: 27
106372314 TACTGAAATG
*
106372324 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * *
106372351 CCCTCGATTTGTAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
106372378 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
106372405 CCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
**
106372432 CCCTCGATTTATTGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
106372459 CCC-CTAATTTACATAATTACCATTTTA
1 CCCTC-GATTTACAGAATTACCGTTTTA
* * *
106372486 CCCCCGATTTACATAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
106372513 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
106372540 CCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* *
106372567 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
106372594 CCC-CTAATTTACATAATTACCATTTTA
1 CCCTC-GATTTACAGAATTACCGTTTTA
* * *
106372621 CCCCCGATTTACATAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
106372648 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * **
106372675 CCCTTGATTTACAAAATTACTATTTTTA
1 CCCTCGATTTACAGAATTAC-CGTTTTA
*
106372703 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
106372723 TAAAATACCC
Statistics
Matches: 316, Mismatches: 47, Indels: 17
0.83 0.12 0.04
Matches are distributed among these distances:
26 4 0.01
27 284 0.90
28 28 0.09
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:106372553 original size:135 final size:135
Alignment explanation
Indices: 106372338--106372722 Score: 610
Period size: 135 Copynumber: 2.8 Consensus size: 135
106372328 CGATTTATAG
* * ** * * *
106372338 AATTACCGTTTTACCCTCGATTTGTAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
1 AATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTT
*
106372403 TACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATTGAATTACCGTTTTACCCCTAATT
66 TACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCCTAATT
106372468 TACAT
131 TACAT
*
106372473 AATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 AATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTT
*
106372538 TACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACTGTTTTACCCCTAATT
66 TACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCCTAATT
106372603 TACAT
131 TACAT
*
106372608 AATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 AATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
106372673 TACCCT-TGATTTACAAAATTACTATTTTTACCCTCGATTTACAAAATTAC
66 TACCCTCAG-TTTACAGAATTACTA-TTTTACCCTCGATTTATAGAATTAC
106372723 TAAAATACCC
Statistics
Matches: 232, Mismatches: 16, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
134 1 0.00
135 208 0.90
136 23 0.10
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (135 bp):
AATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTT
TACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCCTAATT
TACAT
Found at i:106372749 original size:55 final size:55
Alignment explanation
Indices: 106372626--106372735 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 55
106372616 TTTTACCCCC
* ** * ****
106372626 GATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTT
1 GATTTACAAAATTACTATTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
106372680 GATTTACAAAATTACTATTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
1 GATTTACAAAATTACTATTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
106372735 G
1 G
106372736 GTTTGTGAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
54 13 0.28
55 34 0.72
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (55 bp):
GATTTACAAAATTACTATTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
Found at i:106373463 original size:14 final size:14
Alignment explanation
Indices: 106373430--106373471 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
106373420 GTGGTTGATT
*
106373430 ATAGGAGAAATCGC
1 ATAGGAGATATCGC
106373444 ATAGGAGATATCGTC
1 ATAGGAGATATCG-C
106373459 A-AGGA-ATATCGC
1 ATAGGAGATATCGC
106373471 A
1 A
106373472 AATCAGGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 2 0.08
13 6 0.23
14 16 0.62
15 2 0.08
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.19
Consensus pattern (14 bp):
ATAGGAGATATCGC
Found at i:106374077 original size:20 final size:20
Alignment explanation
Indices: 106374047--106374117 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
106374037 ATTTTGATAA
*
106374047 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
*
106374067 ACATGGCATGTATGATATGC
1 ACATGACATGTATGATATGC
*
106374087 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
*
106374107 ACATGAGATGT
1 ACATGACATGT
106374118 TCATAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:106374219 original size:24 final size:24
Alignment explanation
Indices: 106374162--106374328 Score: 232
Period size: 24 Copynumber: 7.0 Consensus size: 24
106374152 GGAGGAAGTG
106374162 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
106374186 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
106374209 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
106374233 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
106374257 -TAAAGAGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
106374280 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
106374304 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
106374329 ATGATAAAGC
Statistics
Matches: 130, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 76 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:106374231 original size:47 final size:47
Alignment explanation
Indices: 106374162--106374328 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 47
106374152 GGAGGAAGTG
106374162 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
106374209 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* * *
106374257 -TAAAGAGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
* *
106374304 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
106374329 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
47 66 0.62
48 31 0.29
49 10 0.09
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:106374278 original size:71 final size:71
Alignment explanation
Indices: 106374162--106374328 Score: 264
Period size: 71 Copynumber: 2.3 Consensus size: 71
106374152 GGAGGAAGTG
*
106374162 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
106374227 AGTTAT
66 AGTTAT
* *
106374233 CAAAAGGGCTTATGCCCCAGTTATTAAAGAGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
106374298 AGTTAT
66 AGTTAT
* *
106374304 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
106374329 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 78 0.88
72 11 0.12
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:106385101 original size:123 final size:123
Alignment explanation
Indices: 106384874--106385167 Score: 509
Period size: 123 Copynumber: 2.4 Consensus size: 123
106384864 GATGTGATGA
*
106384874 TTAT-TGTATATGAGTATTTGAATGATACCCGGGCTAAGTCCCGAAGGCGATTATGCAAGTGATA
1 TTATGTGTGTATGAGTATTTGAATGATACCCGGGCTAAGTCCCGAAGGCGATTATGCAAGTGATA
*
106384938 TGTTTGTGTTTGAGCCTTAGTAACGAAAATGAAACATGGATGTGTAATGATTATTGAT
66 TGTTTGTGTTTGAGCCTTAGTAACGAAAATGAAACATGGATATGTAATGATTATTGAT
106384996 TTATGTGTGTATGAGTATTTGAATGATACCCGGGCTAAGTCCCGAAGGCGATTATGCAAGTGATA
1 TTATGTGTGTATGAGTATTTGAATGATACCCGGGCTAAGTCCCGAAGGCGATTATGCAAGTGATA
106385061 TGTTTGTGTTTGAGCCTTAGTAACGAAAATGAAACATGGATATGTAATGATTATTGAT
66 TGTTTGTGTTTGAGCCTTAGTAACGAAAATGAAACATGGATATGTAATGATTATTGAT
* * * *
106385119 GTATGTGTGTGCATGAGCAATTGAATGATATCCGGGCTAAGTCCCGAAG
1 TTATGTGTGT--ATGAGTATTTGAATGATACCCGGGCTAAGTCCCGAAG
106385168 ACATTTATGC
Statistics
Matches: 163, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
122 4 0.02
123 125 0.77
125 34 0.21
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (123 bp):
TTATGTGTGTATGAGTATTTGAATGATACCCGGGCTAAGTCCCGAAGGCGATTATGCAAGTGATA
TGTTTGTGTTTGAGCCTTAGTAACGAAAATGAAACATGGATATGTAATGATTATTGAT
Found at i:106385205 original size:40 final size:40
Alignment explanation
Indices: 106385146--106385353 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
106385136 CAATTGAATG
* * * *
106385146 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
106385186 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
106385226 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
106385266 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
106385306 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
106385346 ATATCCGG
1 ATATCCGG
106385354 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:106385284 original size:80 final size:80
Alignment explanation
Indices: 106385147--106385353 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
106385137 AATTGAATGA
* * ** * * *
106385147 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CA
*
106385212 -TTGTGCTAGT-G-AC
65 TTTGTGCAAGTCGTAC
* * *
106385225 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
*
106385290 ATTTGTGCAAGTCGTTC
64 ATTTGTGCAAGTCGTAC
* *
106385307 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
106385354 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 2 0.02
80 103 0.94
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCGTAC
Found at i:106393035 original size:18 final size:18
Alignment explanation
Indices: 106393008--106393042 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
106392998 TACTCGAATT
106393008 ATGTGAAATGAAATATGG
1 ATGTGAAATGAAATATGG
* *
106393026 ATGTGTAATGAATTATG
1 ATGTGAAATGAAATATG
106393043 TGTGATTATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (18 bp):
ATGTGAAATGAAATATGG
Found at i:106393244 original size:40 final size:39
Alignment explanation
Indices: 106393185--106393289 Score: 131
Period size: 39 Copynumber: 2.7 Consensus size: 39
106393175 CAATTGAATG
* *
106393185 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAG-CATTTATGCTAGTAACT
* * *
106393225 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAA-GCATTTATGCTAGTAACT
*
106393264 ACATCCGGGCTAAGACCCGAAGCATT
1 ATATCCGGGCTAAGACCCGAAGCATT
106393290 CGTGCAAGTT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
38 3 0.05
39 31 0.55
40 21 0.38
41 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGCATTTATGCTAGTAACT
Found at i:106393270 original size:39 final size:38
Alignment explanation
Indices: 106393227--106393373 Score: 149
Period size: 39 Copynumber: 3.8 Consensus size: 38
106393217 TAGTAATTAT
* *
106393227 ATCCGGGTTAAGACCCGAAGGCATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTG-CTAC
* *
106393266 ATCCGGGCTAAGACCCGAA-GCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAG-TGCTAC
* *
106393305 ATCC-GGCTAATACCCGAAGGCATTTGTGCAAGT-CGTTC
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTGC-TAC
106393343 TATCC-GGCTAAGACCCGAAGGCATTCGTGCA
1 -ATCCGGGCTAAGACCCGAAGGCATT-GTGCA
106393374 TGTTTATATC
Statistics
Matches: 92, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
38 22 0.24
39 66 0.72
40 4 0.04
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGCTAC
Found at i:106396154 original size:38 final size:39
Alignment explanation
Indices: 106396101--106396204 Score: 131
Period size: 38 Copynumber: 2.7 Consensus size: 39
106396091 TGCTGGAAAT
* * *
106396101 TATAACCGGGTTAAGACCCGAAGGCAAT-GTGCTAGTGC-
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGT-CA
*
106396139 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCA
*
106396178 TTCTATCCGGGCTAAGACCCGAAGGCA
1 -TATATCCGGGCTAAGACCCGAAGGCA
106396205 TTTGTGCAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 26 0.45
39 7 0.12
40 25 0.43
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCA
Found at i:106396225 original size:40 final size:38
Alignment explanation
Indices: 106396058--106396243 Score: 137
Period size: 40 Copynumber: 4.8 Consensus size: 38
106396048 TGAGAAATTG
* * *
106396058 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
106396098 AAT-TATAACCGGGTTAAGACCCGAAGGCA-ATGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
106396134 AGTGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
1 AATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A
* *
106396174 GTCAT-TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 --AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
106396213 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
106396244 CTTGGTGCGG
Statistics
Matches: 114, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
36 4 0.04
37 4 0.04
38 24 0.21
39 7 0.06
40 74 0.65
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:106396268 original size:80 final size:79
Alignment explanation
Indices: 106396102--106396283 Score: 181
Period size: 80 Copynumber: 2.3 Consensus size: 79
106396092 GCTGGAAATT
* * *
106396102 ATAACCGGGTTAAGACCCGAAGGCAATGTGCTAGTGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATAACCGGGCTAAGACCCGAAGGCAATGTGCAAATGCTATATCCGGGCTAAGACCCGAAGGCATT
*
106396167 CGTGCGAGTCATTC
66 CGTGCGAGTCATCC
* * * * *
106396181 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-CGTGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCA-ATGTGCAAATGC-T-ATATCCGGGCTAAGACCCGAAGGC
* * * *
106396244 CTTGGTGCGGGTTA-CC
63 ATTCGTGCGAGTCATCC
* *
106396260 ATAACCGGGCTATGTCCCGAAGGC
1 ATAACCGGGCTAAGACCCGAAGGC
106396284 GATTGAACGA
Statistics
Matches: 83, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
78 23 0.28
79 9 0.11
80 51 0.61
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (79 bp):
ATAACCGGGCTAAGACCCGAAGGCAATGTGCAAATGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTCATCC
Found at i:106403982 original size:40 final size:40
Alignment explanation
Indices: 106403876--106404059 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
106403866 TGCTGGAAAT
* * * * * **
106403876 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
106403916 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
106403956 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
106403994 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
106404035 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
106404060 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:106406211 original size:27 final size:27
Alignment explanation
Indices: 106406173--106406226 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
106406163 TGGCAGAGAA
106406173 AGGAAAATGGATAAGAGAAATGACCAC
1 AGGAAAATGGATAAGAGAAATGACCAC
106406200 AGGAAAATGGATAAGAGAAATGACCAC
1 AGGAAAATGGATAAGAGAAATGACCAC
106406227 TTGTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.26, T:0.11
Consensus pattern (27 bp):
AGGAAAATGGATAAGAGAAATGACCAC
Found at i:106409853 original size:30 final size:30
Alignment explanation
Indices: 106409802--106409859 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
106409792 TTAATACGAT
106409802 CTTTGGCAAAATTACCATTTTGCCCCTAAA
1 CTTTGGCAAAATTACCATTTTGCCCCTAAA
* *
106409832 CTTTTGCATAATTA-CACTTTTGCCCCTA
1 CTTTGGCAAAATTACCA-TTTTGCCCCTA
106409860 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.38
Consensus pattern (30 bp):
CTTTGGCAAAATTACCATTTTGCCCCTAAA
Found at i:106411177 original size:26 final size:26
Alignment explanation
Indices: 106411148--106411243 Score: 113
Period size: 26 Copynumber: 3.7 Consensus size: 26
106411138 ATTATGTGGA
*
106411148 AAGTCTACAAGGACTATCTATTGCTG
1 AAGTCCACAAGGACTATCTATTGCTG
** *
106411174 AAGTCCACAAGGAAAATTTATTGCTG
1 AAGTCCACAAGGACTATCTATTGCTG
* *
106411200 AAGTCCACAATGACTATCTATT-ATG
1 AAGTCCACAAGGACTATCTATTGCTG
*
106411225 AGAATCCACAAGGACTATC
1 A-AGTCCACAAGGACTATC
106411244 GCTTGAGGAA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
25 3 0.05
26 55 0.95
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (26 bp):
AAGTCCACAAGGACTATCTATTGCTG
Found at i:106412312 original size:28 final size:28
Alignment explanation
Indices: 106412272--106412327 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
106412262 AAGTACGAGC
* *
106412272 ATGAATATCGTAGAGTCTTAGTCACAAA
1 ATGAATATAGTAGAGTCTTAGCCACAAA
106412300 ATGAATATAGTAGAGTCTTAGCCACAAA
1 ATGAATATAGTAGAGTCTTAGCCACAAA
106412328 GTGCATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (28 bp):
ATGAATATAGTAGAGTCTTAGCCACAAA
Found at i:106414320 original size:5 final size:5
Alignment explanation
Indices: 106414310--106414379 Score: 65
Period size: 5 Copynumber: 14.4 Consensus size: 5
106414300 GTGTGGACCC
* * *
106414310 AAATA AAATA ATA-A AAAT- AAATA AAAT- AAATA AAACA AAATA AAACA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA
* *
106414357 AAACA AAACA AAATA AATATA AA
1 AAATA AAATA AAATA AA-ATA AA
106414380 TTATTAACAT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
4 11 0.20
5 39 0.71
6 5 0.09
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.16
Consensus pattern (5 bp):
AAATA
Found at i:106414333 original size:18 final size:19
Alignment explanation
Indices: 106414310--106414380 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
106414300 GTGTGGACCC
106414310 AAATAAAAT-AATAAAA-A
1 AAATAAAATAAATAAAACA
106414327 TAAATAAAATAAATAAAACA
1 -AAATAAAATAAATAAAACA
* *
106414347 AAATAAAACAAAACAAAACA
1 AAATAAAA-TAAATAAAACA
106414367 AAATAAATATAAAT
1 AAATAAA-ATAAAT
106414381 TATTAACATC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
18 9 0.20
19 15 0.33
20 20 0.44
21 1 0.02
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (19 bp):
AAATAAAATAAATAAAACA
Found at i:106422904 original size:89 final size:89
Alignment explanation
Indices: 106422753--106422925 Score: 337
Period size: 89 Copynumber: 1.9 Consensus size: 89
106422743 GTAGTGCTCT
106422753 CAATTTTCCAGATATGTTCTTAGCTATGAATGAGTGAGTAGACCCTACGTCTATCAAGGTAATAT
1 CAATTTTCCAGATATGTTCTTAGCTATGAATGAGTGAGTAGACCCTACGTCTATCAAGGTAATAT
106422818 ACAGTACATCAAGAATAAAATCCC
66 ACAGTACATCAAGAATAAAATCCC
*
106422842 CAATTTTCCAGATATGTTCTTAGCTATGAATGAGTGAGTAGACCCTACGTCTATCAGGGTAATAT
1 CAATTTTCCAGATATGTTCTTAGCTATGAATGAGTGAGTAGACCCTACGTCTATCAAGGTAATAT
106422907 ACAGTACATCAAGAATAAA
66 ACAGTACATCAAGAATAAA
106422926 GAACGTACCT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (89 bp):
CAATTTTCCAGATATGTTCTTAGCTATGAATGAGTGAGTAGACCCTACGTCTATCAAGGTAATAT
ACAGTACATCAAGAATAAAATCCC
Found at i:106425685 original size:42 final size:42
Alignment explanation
Indices: 106425571--106425818 Score: 249
Period size: 42 Copynumber: 5.9 Consensus size: 42
106425561 ATATGTCGTA
* * * *
106425571 CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
106425613 CGAA-GCCAATAG-CCCAG-CTATGGTCTTACACGAAATCTCATTAT
1 C-AATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCTCA-TAT
* ** * *
106425657 -GATGCCATGTCTTAGACATGGTCTTACACGTAATATCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
106425698 CAATGCCAATAG-CCCA-ACTATGGTCTTACACG-AATCTCATAT
1 CAATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCTCATAT
* * *
106425740 CGATGCCATGTCCTAGACATGGTCTTACACGAAATATCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* *
106425782 CAAAGCCATGTCCCAGACATGGTCTTACATGAAATCT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCT
106425819 TATAATGGTG
Statistics
Matches: 170, Mismatches: 21, Indels: 30
0.77 0.10 0.14
Matches are distributed among these distances:
40 1 0.01
41 22 0.13
42 94 0.55
43 49 0.29
44 4 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
Found at i:106425776 original size:84 final size:84
Alignment explanation
Indices: 106425573--106425818 Score: 322
Period size: 85 Copynumber: 2.9 Consensus size: 84
106425563 ATGTCGTACA
* * * * * *
106425573 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCGAAGCCAATAGCCCAGCTATGGTC
1 ATGCCATGTCCTAGACATGGTCTTACACGTAATATCATATC-AAGCCAATAGCCCAACTATGGTC
106425638 TTACACGAAATCTCATTATG
65 TTACACGAAATCTCATTATG
*
106425658 ATGCCATGTCTTAGACATGGTCTTACACGTAATATCATATCAATGCCAATAGCCCAACTATGGTC
1 ATGCCATGTCCTAGACATGGTCTTACACGTAATATCATATCAA-GCCAATAGCCCAACTATGGTC
106425723 TTACACG-AATCTCA-TATCG
65 TTACACGAAATCTCATTAT-G
*
106425742 ATGCCATGTCCTAGACATGGTCTTACACGAAATATCATATCAAAGCC-AT-GTCCCAGAC-ATGG
1 ATGCCATGTCCTAGACATGGTCTTACACGTAATATCATATC-AAGCCAATAG-CCCA-ACTATGG
*
106425804 TCTTACATGAAATCT
63 TCTTACACGAAATCT
106425819 TATAATGGTG
Statistics
Matches: 145, Mismatches: 10, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
82 1 0.01
83 21 0.14
84 59 0.41
85 64 0.44
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (84 bp):
ATGCCATGTCCTAGACATGGTCTTACACGTAATATCATATCAAGCCAATAGCCCAACTATGGTCT
TACACGAAATCTCATTATG
Found at i:106425842 original size:48 final size:48
Alignment explanation
Indices: 106425742--106425949 Score: 158
Period size: 48 Copynumber: 4.5 Consensus size: 48
106425732 TCTCATATCG
* * *
106425742 ATGCCATGTCCTAGACATGGTCTTACACGAAA--T-ATCAT-AT--CA
1 ATGCCATGTCCCAGACATGGTCTTACATGAAACCTCATAATGATGCCA
* * * * * *
106425784 AAGCCATGTCCCAGACATGGTCTTACATGAAATCTTATAATGGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATGAAACCTCATAATGATGCCA
* * * * *
106425832 ATGCCATGTCCCAGGCATGGTCTTATACGGAACCTCATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAAACCTCATAATGATGCCA
* * ** * **
106425880 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATGTTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAAACCTCATAATGATGCCA
* * *
106425928 ATGTCATATCCCAGATATGGTC
1 ATGCCATGTCCCAGACATGGTC
106425950 GTATACGGGA
Statistics
Matches: 134, Mismatches: 26, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
42 29 0.22
44 1 0.01
45 4 0.03
46 1 0.01
48 99 0.74
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAAACCTCATAATGATGCCA
Found at i:106425960 original size:48 final size:48
Alignment explanation
Indices: 106425832--106425960 Score: 168
Period size: 48 Copynumber: 2.7 Consensus size: 48
106425822 AATGGTGTCG
* ** * *
106425832 ATGCCATGTCCCAGGCATGGTCTTATACGGAACCTCATATTGATGCCA
1 ATGCCATATCCCAGATATGGTCTTATACGGGATCTCATATTGATGCCA
* * *
106425880 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATGTTGATGCCA
1 ATGCCATATCCCAGATATGGTCTTATACGGGATCTCATATTGATGCCA
* *
106425928 ATGTCATATCCCAGATATGGTCGTATACGGGAT
1 ATGCCATATCCCAGATATGGTCTTATACGGGAT
106425961 TTCAATACTC
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTATACGGGATCTCATATTGATGCCA
Found at i:106431921 original size:85 final size:84
Alignment explanation
Indices: 106431775--106432010 Score: 246
Period size: 85 Copynumber: 2.8 Consensus size: 84
106431765 TATCCTGGAT
* *
106431775 ATGGTCTTACATGTAATCTCATATCGAAACCAATACCCTAGCTATGGTCTTACTCGAAATCTCAT
1 ATGGTCTTACATGTAATATCATATC-AAACCAATACCCTAGCTATGGTCTTACACGAAATCTCAT
* *
106431840 AACGGTCCCATGTCCCAGAC
65 AACGATCCCATGTCCCAAAC
** * *
106431860 ATGGTCTTACATGTAATATCATATCAATTTCAATAGCCC-ATCTATGGTTTTACAC-AGAATCTC
1 ATGGTCTTACATGTAATATCATATCAA-ACCAATA-CCCTAGCTATGGTCTTACACGA-AATCTC
* *
106431923 ATATCGATGCCATGTCCCAAAC
63 ATAACGATCCCATGTCCCAAAC
* * ** * *
106431945 ATGGTCTTACACGAAATATCATATCAAAGCC-ATGTCCTAGAC-ATGGTCTTACATGAAGTCTCA
1 ATGGTCTTACATGTAATATCATATCAAA-CCAATACCCTAG-CTATGGTCTTACACGAAATCTCA
106432008 TAA
64 TAA
106432011 TGGTGCTGAT
Statistics
Matches: 123, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
83 2 0.02
84 24 0.20
85 94 0.76
86 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (84 bp):
ATGGTCTTACATGTAATATCATATCAAACCAATACCCTAGCTATGGTCTTACACGAAATCTCATA
ACGATCCCATGTCCCAAAC
Found at i:106432009 original size:42 final size:42
Alignment explanation
Indices: 106431775--106432009 Score: 129
Period size: 42 Copynumber: 5.5 Consensus size: 42
106431765 TATCCTGGAT
* * * * *
106431775 ATGGTCTTACATGTAATCTCATATCGAAA-CCAAT-ACCCTAGC
1 ATGGTCTTACACGAAATCTCATATC-AAAGCC-ATGTCCCAAAC
* * **** *
106431817 TATGGTCTTACTCGAAATCTCATAACGGTCCCATGTCCCAGAC
1 -ATGGTCTTACACGAAATCTCATATCAAAGCCATGTCCCAAAC
* * * ** * *
106431860 ATGGTCTTACATGTAATATCATATCAATTTCAATAG-CCC-ATC
1 ATGGTCTTACACGAAATCTCATATCAA-AGCCAT-GTCCCAAAC
* * *
106431902 TATGGTTTTACAC-AGAATCTCATATCGATGCCATGTCCCAAAC
1 -ATGGTCTTACACGA-AATCTCATATCAAAGCCATGTCCCAAAC
* * *
106431945 ATGGTCTTACACGAAATATCATATCAAAGCCATGTCCTAGAC
1 ATGGTCTTACACGAAATCTCATATCAAAGCCATGTCCCAAAC
* *
106431987 ATGGTCTTACATGAAGTCTCATA
1 ATGGTCTTACACGAAATCTCATA
106432010 ATGGTGCTGA
Statistics
Matches: 144, Mismatches: 39, Indels: 19
0.71 0.19 0.09
Matches are distributed among these distances:
41 1 0.01
42 84 0.58
43 58 0.40
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGAAATCTCATATCAAAGCCATGTCCCAAAC
Found at i:106433549 original size:48 final size:46
Alignment explanation
Indices: 106433486--106433655 Score: 180
Period size: 48 Copynumber: 3.6 Consensus size: 46
106433476 ACAGCATGAG
106433486 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TA
* * * *
106433534 AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGACA-A
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA
** ** *
106433579 GAGCTGGTGTAAGACATGTCTGGGACATGCATCAACCTCGTGATATACA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT--A
** *
106433628 AGTTAGTGTAAGACCTGTCTGGGACATG
1 AGCCAGTGTAAGACATGTCTGGGACATG
106433656 GCGTCAGCTT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 35 0.34
48 65 0.64
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA
Found at i:106434544 original size:20 final size:20
Alignment explanation
Indices: 106434505--106434544 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
106434495 GTTATAATGA
106434505 CCACACGGGCGTATTGCCCTT
1 CCACACGGGCG-ATTGCCCTT
106434526 CCACACGGGC-ATGTGCCCT
1 CCACACGGGCGAT-TGCCCT
106434545 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (20 bp):
CCACACGGGCGATTGCCCTT
Found at i:106436855 original size:41 final size:41
Alignment explanation
Indices: 106436798--106436882 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
106436788 AACAGAGATT
106436798 CAAAGAACAGAGTAAGCGTTTAATGCTTAGTAAGTTTTGAG
1 CAAAGAACAGAGTAAGCGTTTAATGCTTAGTAAGTTTTGAG
*
106436839 CAAAGAACGGAGTAAGCGTTTAATGCTTAGTAAGTTTTGAG
1 CAAAGAACAGAGTAAGCGTTTAATGCTTAGTAAGTTTTGAG
106436880 CAA
1 CAA
106436883 TGGAATTAGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (41 bp):
CAAAGAACAGAGTAAGCGTTTAATGCTTAGTAAGTTTTGAG
Found at i:106437252 original size:40 final size:40
Alignment explanation
Indices: 106437206--106437349 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
106437196 CTTGCACAAG
* * * * *
106437206 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
106437246 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
** * *
106437286 GCCTTCGGGTTTTAGCCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
106437326 GCCTTCAGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
106437350 CATTCGAATA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:106442003 original size:3 final size:3
Alignment explanation
Indices: 106441995--106442037 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
106441985 ACCGAAACTC
106441995 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
106442038 TGGAAAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:106445891 original size:17 final size:16
Alignment explanation
Indices: 106445849--106445897 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
106445839 GTTTATTCAT
* *
106445849 TTTTATCATTTGTTTA
1 TTTTATTATTTATTTA
*
106445865 GTTTTCTTATTTATTTA
1 -TTTTATTATTTATTTA
106445882 TTGTTATTATTTATTT
1 TT-TTATTATTTATTT
106445898 TTATCAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 2 0.07
17 25 0.93
ACGTcount: A:0.18, C:0.04, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTATTATTTATTTA
Found at i:106456177 original size:27 final size:26
Alignment explanation
Indices: 106456140--106456254 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
106456130 AGCATGGCTG
* *
106456140 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
106456166 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
106456194 CCAGAACAGATATATGTGGCAGAGCTA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
106456221 CTAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
106456248 CCAGAAC
1 CCAGAAC
106456255 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.07
27 54 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:106456199 original size:54 final size:54
Alignment explanation
Indices: 106456140--106456254 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
106456130 AGCATGGCTG
106456140 CCAGAACAGATA-ATGTGACAGAG-TCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCT-ACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
106456194 CCAGAACAGATATATGTGGCAGAGCTACTAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCTACCAGATCAGATAATCGTGGCAGAGCCA
106456248 CCAGAAC
1 CCAGAAC
106456255 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
54 37 0.69
55 16 0.30
56 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCTACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:106457954 original size:26 final size:26
Alignment explanation
Indices: 106457864--106457948 Score: 145
Period size: 26 Copynumber: 3.3 Consensus size: 26
106457854 CATGAAATTC
106457864 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
106457890 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
106457916 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
106457942 TTATCAT
1 TTATCAT
106457949 TGAACACTAT
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
25 1 0.02
26 56 0.98
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:106461684 original size:27 final size:27
Alignment explanation
Indices: 106461630--106461713 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
106461620 AGCATTGCTG
* * **
106461630 CCAGAATAGAT-AATGTGACAGATTCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
* *
106461656 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
* *
106461683 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
106461710 CCAG
1 CCAG
106461714 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 10 0.21
27 37 0.79
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAAATGTGGCAGAGCCA
Found at i:106463990 original size:40 final size:40
Alignment explanation
Indices: 106463888--106464071 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
106463878 AAATTGAATG
* * * * *
106463888 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
106463928 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
106463968 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
106464008 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
106464048 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
106464072 CTGGTGCGGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:106465266 original size:21 final size:21
Alignment explanation
Indices: 106465240--106465280 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
106465230 ATTGGCCCGA
106465240 CCAAAAATTCTAGAAATAAAT
1 CCAAAAATTCTAGAAATAAAT
106465261 CCAAAAATTCTAGAAATAAA
1 CCAAAAATTCTAGAAATAAA
106465281 CCCATGGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.22
Consensus pattern (21 bp):
CCAAAAATTCTAGAAATAAAT
Found at i:106475625 original size:71 final size:71
Alignment explanation
Indices: 106475541--106475704 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
106475531 CGATTTGTCT
106475541 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
106475606 CTTTCA
66 CTTTCA
106475612 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
106475677 CTTTCA
66 CTTTCA
106475683 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
106475705 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:106475742 original size:71 final size:70
Alignment explanation
Indices: 106475541--106475738 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
106475531 CGATTTGTCT
* * * *
106475541 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
106475606 CTTTCA
65 CTTTCA
* * * *
106475612 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
106475677 CTTTCA
65 CTTTCA
* *
106475683 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
106475739 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:106479727 original size:135 final size:137
Alignment explanation
Indices: 106479484--106479768 Score: 502
Period size: 135 Copynumber: 2.1 Consensus size: 137
106479474 TATTGGGCCT
** *
106479484 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
106479549 AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAGCATCAAT-AA
66 AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
106479613 CATATGC
131 CATATGC
106479620 AAGCCCATTTGGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
106479684 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
106479749 CATATGC
131 CATATGC
106479756 AAGCCCATTTGGG
1 AAGCCCATTTGGG
106479769 GAGACTACTC
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
135 91 0.64
136 51 0.36
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:106480053 original size:25 final size:27
Alignment explanation
Indices: 106480016--106480068 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
106480006 TCAAACATGC
106480016 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
106480042 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
106480068 A
1 A
106480069 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:106481584 original size:26 final size:25
Alignment explanation
Indices: 106481548--106481706 Score: 248
Period size: 26 Copynumber: 6.2 Consensus size: 25
106481538 CATGAAATTC
*
106481548 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
*
106481574 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
106481600 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCTA
*
106481626 TTATCATGGA-ATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
106481650 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCTA
106481676 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
106481701 TTATCA
1 TTATCA
106481707 ATTTGTATCA
Statistics
Matches: 127, Mismatches: 3, Indels: 7
0.93 0.02 0.05
Matches are distributed among these distances:
24 21 0.17
25 28 0.22
26 77 0.61
27 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCTA
Found at i:106481660 original size:50 final size:51
Alignment explanation
Indices: 106481548--106481706 Score: 266
Period size: 50 Copynumber: 3.1 Consensus size: 51
106481538 CATGAAATTC
* * *
106481548 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCTA
*
106481600 TTATCATGGAACATTTACCTAACCTATTATCATGGA-ATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTA
106481650 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTA
106481701 TTATCA
1 TTATCA
106481707 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
50 48 0.48
51 21 0.21
52 32 0.32
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (51 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTA
Found at i:106485690 original size:135 final size:137
Alignment explanation
Indices: 106485447--106485731 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
106485437 TATTGGGCCT
** *
106485447 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
106485512 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
106485576 CATATGC
131 CATATGC
106485583 AAGCCCATTTGGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
106485647 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
106485712 CATATGC
131 CATATGC
106485719 AAGCCCATTTGGG
1 AAGCCCATTTGGG
106485732 GAGACTACTC
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 93 0.65
136 51 0.35
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:106486016 original size:25 final size:27
Alignment explanation
Indices: 106485979--106486031 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
106485969 TCAAACATGC
106485979 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
106486005 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
106486031 A
1 A
106486032 AAATGTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:106487549 original size:26 final size:26
Alignment explanation
Indices: 106487513--106487674 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
106487503 CATGAAATTC
*
106487513 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
106487539 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
106487565 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
106487591 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
106487617 TTATCATGGAACATTTATCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
106487643 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
106487669 TTATCA
1 TTATCA
106487675 ATTTGTATCA
Statistics
Matches: 131, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 131 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:106489927 original size:51 final size:50
Alignment explanation
Indices: 106489870--106490067 Score: 341
Period size: 47 Copynumber: 4.0 Consensus size: 50
106489860 GTATAAGATA
106489870 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATG
106489921 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-G--TG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
*
106489968 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AATGTATA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
*
106490017 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
106490067 T
1 T
106490068 GTGACGTGTA
Statistics
Matches: 140, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
46 2 0.01
47 44 0.31
49 43 0.31
50 7 0.05
51 44 0.31
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (50 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
Found at i:106490043 original size:96 final size:98
Alignment explanation
Indices: 106489870--106490060 Score: 359
Period size: 96 Copynumber: 2.0 Consensus size: 98
106489860 GTATAAGATA
*
106489870 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
106489935 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
106489968 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA-TGTATATATATATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
106490031 GGCCTAATGGCCGATGTGATGAATGTGAAA
66 GGCCTAATGGCCGATGTGATGAATGTGAAA
106490061 TATATGTGTG
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
96 49 0.53
97 2 0.02
98 41 0.45
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.31
Consensus pattern (98 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:106490108 original size:48 final size:48
Alignment explanation
Indices: 106490052--106490203 Score: 223
Period size: 48 Copynumber: 3.2 Consensus size: 48
106490042 CGATGTGATG
** *
106490052 AATGTGAAATATATGTGTGACGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* * ** *
106490100 AATGTGAAACATATATAAGATATGTGTATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
106490148 AATGTAAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
106490196 AATGTGAA
1 AATGTGAA
106490204 TGTTGTAATA
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:106490114 original size:96 final size:97
Alignment explanation
Indices: 106489921--106490204 Score: 248
Period size: 96 Copynumber: 2.9 Consensus size: 97
106489911 AAAGTGTATG
* * *
106489921 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TAT-ATGTG-ATAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TATATGTGTGATGTGTATAT
* * * * * **
106489982 G-GCCTAATGGCCGATGTGATGAATGTGAATGTATA
65 GTG-GTAA-AGCCGAAGGGCT-AATGTGAATACATA
*
106490017 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATGTGTGACGTGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATGTGTGATGTGTATATG
106490082 TGGTAAAGCCGAAGGGCTAATGTGAA-ACATA
66 TGGTAAAGCCGAAGGGCTAATGTGAATACATA
* * * * * *
106490113 TATAAGATATGTG-TATGTG-GTAA-AGCCGAATG-GCT-AATGTAAAATATATGTGTGATATGT
1 TAT---ATATGTGATAAG-GCCTAATGGCCG-ATGTGATGAATGTGAAATATATGTGTGATGTGT
*
106490173 ATATGTGGTAAAGCCGAATGGCTAATGTGAAT
61 ATATGTGGTAAAGCCGAAGGGCTAATGTGAAT
106490205 GTTGTAATAT
Statistics
Matches: 158, Mismatches: 19, Indels: 21
0.80 0.10 0.11
Matches are distributed among these distances:
95 3 0.02
96 102 0.65
97 16 0.10
98 21 0.13
99 15 0.09
100 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (97 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATGTGTGATGTGTATATG
TGGTAAAGCCGAAGGGCTAATGTGAATACATA
Found at i:106490297 original size:37 final size:37
Alignment explanation
Indices: 106490243--106490370 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
106490233 AACTTGGAAA
* *
106490243 TATGTTCCGGGTGAGACCCGATGACCACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
106490281 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
106490318 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
106490355 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
106490371 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:106495668 original size:30 final size:30
Alignment explanation
Indices: 106495634--106495693 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
106495624 ATTTAATACG
106495634 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
106495664 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
106495694 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:106499708 original size:18 final size:19
Alignment explanation
Indices: 106499687--106499722 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
106499677 AATAAAGAAA
*
106499687 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
106499705 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
106499723 AAAGAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:106500229 original size:29 final size:29
Alignment explanation
Indices: 106500187--106500318 Score: 210
Period size: 29 Copynumber: 4.5 Consensus size: 29
106500177 AAAATTGTAC
*
106500187 AGCACTAAGTGTGCAAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
106500216 AGCACTAAGTGTGCGAACTGAAAAAATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
106500245 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
* *
106500275 AGCACTAAGTGTGCGAGCTGAAAATAAAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
106500304 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
106500319 GATTCACTAT
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
29 69 0.71
30 28 0.29
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:106500296 original size:59 final size:58
Alignment explanation
Indices: 106500187--106500318 Score: 212
Period size: 59 Copynumber: 2.3 Consensus size: 58
106500177 AAAATTGTAC
*
106500187 AGCACTAAGTGTGCAAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAA-AATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATAA-AT
* *
106500245 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATAAAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATAAAT
106500304 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
106500319 GATTCACTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
58 22 0.32
59 45 0.65
60 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATAAAT
Found at i:106503908 original size:26 final size:26
Alignment explanation
Indices: 106503879--106503986 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
106503869 TGGTACAAAT
106503879 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
106503905 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106503931 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106503957 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106503983 TGAT
1 TGAT
106503987 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106510193 original size:30 final size:29
Alignment explanation
Indices: 106510153--106510267 Score: 101
Period size: 28 Copynumber: 4.0 Consensus size: 29
106510143 CGAAGGCATT
* *
106510153 CTTTTGACAGAGATTGTAACAAGGGCTTC
1 CTTTTAACAGAGATTGCAACAAGGGCTTC
*
106510182 CTTTTTAACAGAGA-T-CACCACAGAGGCTTC
1 C-TTTTAACAGAGATTGCAACA-AG-GGCTTC
* * *
106510212 CTTTTAACAGAGATAGCCACAAAGGCTTC
1 CTTTTAACAGAGATTGCAACAAGGGCTTC
* * *
106510241 C-TTTAACAGAGATAGCCACAAAGGCTT
1 CTTTTAACAGAGATTGCAACAAGGGCTT
106510268 TATTTAATAG
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
28 29 0.39
29 23 0.31
30 19 0.26
31 3 0.04
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (29 bp):
CTTTTAACAGAGATTGCAACAAGGGCTTC
Found at i:106510254 original size:28 final size:28
Alignment explanation
Indices: 106510171--106510347 Score: 167
Period size: 28 Copynumber: 6.2 Consensus size: 28
106510161 AGAGATTGTA
*
106510171 ACAAGGGCTTCCTTTTTAACAGAGATCA-CC
1 ACAAAGGCTTCC--TTTAACAGAGAT-AGCC
*
106510201 ACAGAGGCTTCCTTTTAACAGAGATAGCC
1 ACAAAGGCTTCC-TTTAACAGAGATAGCC
106510230 ACAAAGGCTTCCTTTAACAGAGATAGCC
1 ACAAAGGCTTCCTTTAACAGAGATAGCC
** * * *
106510258 ACAAAGGCTTTATTTAATAGATATTGCC
1 ACAAAGGCTTCCTTTAACAGAGATAGCC
* * * * * *
106510286 ACAAATGATTCCTATAACTGAGATCGTC
1 ACAAAGGCTTCCTTTAACAGAGATAGCC
* * *
106510314 ATAAAGGCTTCTTTTAATAGAGATAGCC
1 ACAAAGGCTTCCTTTAACAGAGATAGCC
106510342 ACAAAG
1 ACAAAG
106510348 ACTTACTTAT
Statistics
Matches: 118, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
28 82 0.69
29 26 0.22
30 10 0.08
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (28 bp):
ACAAAGGCTTCCTTTAACAGAGATAGCC
Found at i:106514690 original size:88 final size:88
Alignment explanation
Indices: 106514552--106514729 Score: 320
Period size: 88 Copynumber: 2.0 Consensus size: 88
106514542 CTTACAGAGC
* *
106514552 TCGTGGACTCGTGAAGATTGGGAGATGGTTGAAGAATCAACACACTATCATCTTGTCTAGCTTTG
1 TCGTGGACTCGTGAAGATTGGGAGACGATTGAAGAATCAACACACTATCATCTTGTCTAGCTTTG
106514617 GTATATAGATACTCTTATTTTGT
66 GTATATAGATACTCTTATTTTGT
* *
106514640 TCGTGGACTCGTGAAGATTGGGAGACGATTGTAGAATCAACACACTATCATCTTGTCTAGTTTTG
1 TCGTGGACTCGTGAAGATTGGGAGACGATTGAAGAATCAACACACTATCATCTTGTCTAGCTTTG
106514705 GTATATAGATACTCTTATTTTGT
66 GTATATAGATACTCTTATTTTGT
106514728 TC
1 TC
106514730 AATGGCATGT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (88 bp):
TCGTGGACTCGTGAAGATTGGGAGACGATTGAAGAATCAACACACTATCATCTTGTCTAGCTTTG
GTATATAGATACTCTTATTTTGT
Found at i:106516057 original size:22 final size:22
Alignment explanation
Indices: 106515995--106516058 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
106515985 ACACACTGGG
106515995 GTTGTGGATGAACCACCAGTAA
1 GTTGTGGATGAACCACCAGTAA
* * * **
106516017 TTTGTAGATAAACTGCCAGTAA
1 GTTGTGGATGAACCACCAGTAA
106516039 GTTGTGGATGAACCACCAGT
1 GTTGTGGATGAACCACCAGT
106516059 GTTTGTAGAT
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (22 bp):
GTTGTGGATGAACCACCAGTAA
Found at i:106518447 original size:127 final size:127
Alignment explanation
Indices: 106518221--106518478 Score: 507
Period size: 127 Copynumber: 2.0 Consensus size: 127
106518211 TTTAATTATA
106518221 TAATATTTATGTAAGGTGATGTCTACTAAACTAAATAATAAATCGACAAAGGAAAGTGCACCTAT
1 TAATATTTATGTAAGGTGATGTCTACTAAACTAAATAATAAATCGACAAAGGAAAGTGCACCTAT
106518286 CAATTAATAGTATAGTTATGGCGAACATAACTATCATTCCTATCACGGCTCAATTTATATTT
66 CAATTAATAGTATAGTTATGGCGAACATAACTATCATTCCTATCACGGCTCAATTTATATTT
106518348 TAATATTTATGTAAGGTGATGTCTACTAAACTAAATAATAAATCGACAAAGGAAAGTGCACCTAT
1 TAATATTTATGTAAGGTGATGTCTACTAAACTAAATAATAAATCGACAAAGGAAAGTGCACCTAT
*
106518413 CAATTAATAGTATAGTTATGGTGAACATAACTATCATTCCTATCACGGCTCAATTTATATTT
66 CAATTAATAGTATAGTTATGGCGAACATAACTATCATTCCTATCACGGCTCAATTTATATTT
106518475 TAAT
1 TAAT
106518479 GTTGTTAGCA
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 130 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (127 bp):
TAATATTTATGTAAGGTGATGTCTACTAAACTAAATAATAAATCGACAAAGGAAAGTGCACCTAT
CAATTAATAGTATAGTTATGGCGAACATAACTATCATTCCTATCACGGCTCAATTTATATTT
Found at i:106521170 original size:23 final size:23
Alignment explanation
Indices: 106521144--106521213 Score: 56
Period size: 23 Copynumber: 2.9 Consensus size: 23
106521134 TATACAAATG
106521144 TAATAATAGTATTTATATATTTT
1 TAATAATAGTATTTATATATTTT
*
106521167 TAAT-ATATTTATTTA-ATTACTTTT
1 TAATAATA-GTATTTATA-TA-TTTT
106521191 TAAGTAAATAGATATTTAT-TATT
1 TAA-T-AATAG-TATTTATATATT
106521214 ATTGTTGTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 7 0.19
25 3 0.08
26 2 0.05
27 9 0.24
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (23 bp):
TAATAATAGTATTTATATATTTT
Found at i:106521342 original size:11 final size:11
Alignment explanation
Indices: 106521316--106521350 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
106521306 GAAACAGAGG
106521316 GAAAAGAAAGAA
1 GAAAAGAAA-AA
106521328 GAAAAGAAAAA
1 GAAAAGAAAAA
106521339 GAAAAGGAAAAA
1 GAAAA-GAAAAA
106521351 CTAGGGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
GAAAAGAAAAA
Found at i:106521739 original size:16 final size:17
Alignment explanation
Indices: 106521718--106521750 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
106521708 TAAATTAGTT
106521718 AATTAGGAT-TAAATTG
1 AATTAGGATATAAATTG
*
106521734 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
106521751 GATAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (17 bp):
AATTAGGATATAAATTG
Found at i:106522180 original size:13 final size:14
Alignment explanation
Indices: 106522159--106522198 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
106522149 ATTTTATTGG
106522159 AAAATGAATTAAA-
1 AAAATGAATTAAAT
*
106522172 AATATGAATTAAAT
1 AAAATGAATTAAAT
106522186 AAAAGTGAATTAA
1 AAAA-TGAATTAA
106522199 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAT
Found at i:106522584 original size:44 final size:44
Alignment explanation
Indices: 106522535--106522626 Score: 121
Period size: 44 Copynumber: 2.1 Consensus size: 44
106522525 TGTTCAGGGA
* *
106522535 TACTTCGACCTTGAGTCAATGAGGCACTATAAGTGTCGTACTGT
1 TACTTCGACCTTGAGTCAATGAGGCACCATAAGTGTCGTACTGC
* ** **
106522579 TACTTCGACTTTGAGTTGATGAGGCACCATGTGTGTCGTACTGC
1 TACTTCGACCTTGAGTCAATGAGGCACCATAAGTGTCGTACTGC
106522623 TACT
1 TACT
106522627 GTTACTTCGG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (44 bp):
TACTTCGACCTTGAGTCAATGAGGCACCATAAGTGTCGTACTGC
Found at i:106523023 original size:12 final size:12
Alignment explanation
Indices: 106523000--106523030 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
106522990 TATGAGAAAG
106523000 TGAAATTATGAAT
1 TGAAA-TATGAAT
106523013 TGAAATATGAAT
1 TGAAATATGAAT
106523025 TGAAAT
1 TGAAAT
106523031 TGAGATATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.35
Consensus pattern (12 bp):
TGAAATATGAAT
Found at i:106529230 original size:90 final size:90
Alignment explanation
Indices: 106528979--106529297 Score: 304
Period size: 90 Copynumber: 3.5 Consensus size: 90
106528969 CTAGCAACTA
* * * * * *
106528979 TTATCTGCAAACTCGTTGTGCATTCACAACCATCTGGAAATGTATTAACCTGGAACACTAGTAGT
1 TTATATGCAAACTCGTTGTGCATTCACAACCATCTGGCAGTATATTAACCTGCAACACTAGTGGT
* ** * *
106529044 TCATCCACAAATTTTCTGGCAGCTC
66 TAATCCACCCATTTTTTGGTAGCTC
* * * * **
106529069 TTATATGCAAACTCGTTGTGCATTCACAACCATCTAGCAGTGTATTAACATGCAACATTTTTGGT
1 TTATATGCAAACTCGTTGTGCATTCACAACCATCTGGCAGTATATTAACCTGCAACACTAGTGGT
106529134 TAATCCACCCATTTTTTGGTAGCTC
66 TAATCCACCCATTTTTTGGTAGCTC
* * * * *
106529159 TTATCTGCAAA-TACGTTGCGTATTCACAACCATCTGGCAGCATATTAACCTGCAACACTGGTGG
1 TTATATGCAAACT-CGTTGTGCATTCACAACCATCTGGCAGTATATTAACCTGCAACACTAGTGG
** *
106529223 ATT-ATCCACCCACATTTTGGTAGCAC
65 -TTAATCCACCCATTTTTTGGTAGCTC
* * * * *
106529249 TCATATGCAAA-TATGTTATGCATTCACAACAATCTGACAG-ATTATTAAC
1 TTATATGCAAACT-CGTTGTGCATTCACAACCATCTGGCAGTA-TATTAAC
106529298 ATGTAATTTT
Statistics
Matches: 190, Mismatches: 36, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
89 2 0.01
90 186 0.98
91 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (90 bp):
TTATATGCAAACTCGTTGTGCATTCACAACCATCTGGCAGTATATTAACCTGCAACACTAGTGGT
TAATCCACCCATTTTTTGGTAGCTC
Found at i:106531015 original size:10 final size:10
Alignment explanation
Indices: 106531000--106531025 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
106530990 ATTTCAATAG
106531000 CATAAATATT
1 CATAAATATT
106531010 CATAAATATT
1 CATAAATATT
106531020 CATAAA
1 CATAAA
106531026 CATGTTCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (10 bp):
CATAAATATT
Found at i:106532802 original size:16 final size:17
Alignment explanation
Indices: 106532783--106532818 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
106532773 CCTTAAACTT
*
106532783 TAAACCCTT-GAAACCC
1 TAAACCCTTAAAAACCC
106532799 TAAACCCTTAAAAACCC
1 TAAACCCTTAAAAACCC
106532816 TAA
1 TAA
106532819 CCTAAACCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.19
Consensus pattern (17 bp):
TAAACCCTTAAAAACCC
Found at i:106532825 original size:22 final size:23
Alignment explanation
Indices: 106532797--106532841 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
106532787 CCCTTGAAAC
106532797 CCTAAACCCTT-AA-AAACCCTAA
1 CCTAAA-CCTTAAACAAACCCTAA
106532819 CCTAAACCTTAAACAAACCCTAA
1 CCTAAACCTTAAACAAACCCTAA
106532842 AAACAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.18
Consensus pattern (23 bp):
CCTAAACCTTAAACAAACCCTAA
Found at i:106533824 original size:20 final size:21
Alignment explanation
Indices: 106533778--106533824 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
106533768 AAAGATAAAT
*
106533778 TAAAATTGCATAATTCTTTGT
1 TAAAATTGCATAATTCTTTGG
106533799 TAAAATTGCATAATTC-TTGG
1 TAAAATTGCATAATTCTTTGG
106533819 TAAAAT
1 TAAAAT
106533825 ATATATTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (21 bp):
TAAAATTGCATAATTCTTTGG
Found at i:106534143 original size:40 final size:39
Alignment explanation
Indices: 106534099--106534176 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
106534089 TATATTTTGA
* * *
106534099 ATATTTATTTAATAT-TTAAAAAGTATGCATTACATTTTTT
1 ATATTTAATT-ATATCTGAAAAAATATGCATTAC-TTTTTT
*
106534139 ATATTTAATTATATCTGAAAAAATATGTATTACTTTTT
1 ATATTTAATTATATCTGAAAAAATATGCATTACTTTTT
106534177 CTCAGTGTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 9 0.27
40 24 0.73
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (39 bp):
ATATTTAATTATATCTGAAAAAATATGCATTACTTTTTT
Found at i:106535313 original size:17 final size:18
Alignment explanation
Indices: 106535279--106535313 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
106535269 AAAATGTAAC
*
106535279 ATTTTTAAATAGATATTT
1 ATTTTTAAATACATATTT
106535297 ATTTTTAAATACA-ATTT
1 ATTTTTAAATACATATTT
106535314 TATTCTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTTAAATACATATTT
Found at i:106535315 original size:18 final size:18
Alignment explanation
Indices: 106535279--106535317 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
106535269 AAAATGTAAC
*
106535279 ATTTTTAAATAGATATTT
1 ATTTTTAAATAAATATTT
106535297 ATTTTTAAATACAAT-TTT
1 ATTTTTAAATA-AATATTT
106535315 ATT
1 ATT
106535318 CTTTGGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
ATTTTTAAATAAATATTT
Found at i:106543757 original size:44 final size:45
Alignment explanation
Indices: 106543664--106543758 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 45
106543654 TACAAAATTG
* * * *
106543664 ATGG-TTTATCCACAACCTACATGGCAGCTTGTCTGTGAATATTA
1 ATGGTTTTGTCCACAAACTACATGGAAGCTTATCTGTGAATATTA
*
106543708 ATGGTTTTGTCCACAAACTATATGGAAGCTTATCTGTGAAT-TTA
1 ATGGTTTTGTCCACAAACTACATGGAAGCTTATCTGTGAATATTA
*
106543752 GTGGTTT
1 ATGGTTT
106543759 ATTTACAACC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
44 13 0.30
45 31 0.70
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (45 bp):
ATGGTTTTGTCCACAAACTACATGGAAGCTTATCTGTGAATATTA
Found at i:106547602 original size:11 final size:12
Alignment explanation
Indices: 106547576--106547604 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
106547566 TCTGCATGTA
106547576 TATTTTAAAGAG
1 TATTTTAAAGAG
106547588 TATTTTAAA-AG
1 TATTTTAAAGAG
106547599 TATTTT
1 TATTTT
106547605 GCTATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (12 bp):
TATTTTAAAGAG
Found at i:106547698 original size:15 final size:15
Alignment explanation
Indices: 106547678--106547710 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
106547668 TCTCTATACT
*
106547678 TGAAACTTTAGATTA
1 TGAAACCTTAGATTA
106547693 TGAAACCTTAGATTA
1 TGAAACCTTAGATTA
106547708 TGA
1 TGA
106547711 GATGATATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (15 bp):
TGAAACCTTAGATTA
Found at i:106548139 original size:34 final size:34
Alignment explanation
Indices: 106548099--106548165 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
106548089 GAGAGAAAGG
*
106548099 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
1 AAAAAATAAAGTACAAAATAAAAGGGAGTCTAGA
106548133 AAAAAATAAAGTACAAAATAAAAGGGAGTCTAG
1 AAAAAATAAAGTACAAAATAAAAGGGAGTCTAG
106548166 TTATACTAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.60, C:0.06, G:0.19, T:0.15
Consensus pattern (34 bp):
AAAAAATAAAGTACAAAATAAAAGGGAGTCTAGA
Found at i:106560599 original size:30 final size:32
Alignment explanation
Indices: 106560542--106560600 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
106560532 GGGTAATTTG
**
106560542 ACAAAAAAATATAAATTCAAGAGCTAAAAGAT
1 ACAAAAAAATATAAATAAAAGAGCTAAAAGAT
106560574 ACAAAAAAATA-AAATAAAAGA-CTAAAA
1 ACAAAAAAATATAAATAAAAGAGCTAAAA
106560601 TAACTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.24
31 8 0.32
32 11 0.44
ACGTcount: A:0.69, C:0.08, G:0.07, T:0.15
Consensus pattern (32 bp):
ACAAAAAAATATAAATAAAAGAGCTAAAAGAT
Found at i:106561214 original size:15 final size:15
Alignment explanation
Indices: 106561190--106561219 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106561180 ATTAATTTTT
*
106561190 TAAATGTTCAAAATA
1 TAAATATTCAAAATA
106561205 TAAATATTCAAAATA
1 TAAATATTCAAAATA
106561220 ATAATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TAAATATTCAAAATA
Found at i:106564853 original size:41 final size:41
Alignment explanation
Indices: 106564808--106564925 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
106564798 TGAAAGATAA
106564808 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
106564849 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106564879 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106564920 ATGTAG
1 ATGTAG
106564926 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:106564864 original size:71 final size:71
Alignment explanation
Indices: 106564776--106564939 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
106564766 GAGATGTATC
106564776 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106564841 AGGACA
66 AGGACA
106564847 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106564912 AGGACA
66 AGGACA
106564918 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
106564940 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:106572408 original size:41 final size:41
Alignment explanation
Indices: 106572363--106572480 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
106572353 TGAAAGATAA
106572363 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
106572404 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106572434 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106572475 ATGTAG
1 ATGTAG
106572481 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:106572419 original size:71 final size:71
Alignment explanation
Indices: 106572331--106572494 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
106572321 GAGATGTATC
106572331 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106572396 AGGACA
66 AGGACA
106572402 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106572467 AGGACA
66 AGGACA
106572473 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
106572495 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:106578298 original size:40 final size:39
Alignment explanation
Indices: 106578244--106578331 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 39
106578234 AACCCAAATC
*
106578244 TAATCACCACCACAAAGCATGCGGGACTTTAAGCCCGGATA
1 TAAT-ACCACCACAAACCATGCGGGACTTT-AGCCCGGATA
* *
106578285 TAATACCATCACAAACCCTGCGGGACTTTAGCCCGGATA
1 TAATACCACCACAAACCATGCGGGACTTTAGCCCGGATA
*
106578324 TAACACCA
1 TAATACCA
106578332 GCACGAATGC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 17 0.40
40 22 0.51
41 4 0.09
ACGTcount: A:0.34, C:0.31, G:0.17, T:0.18
Consensus pattern (39 bp):
TAATACCACCACAAACCATGCGGGACTTTAGCCCGGATA
Found at i:106578357 original size:30 final size:30
Alignment explanation
Indices: 106578321--106578378 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
106578311 TTTAGCCCGG
106578321 ATATAACACCAGCACGAATGCCTTCGGGGA
1 ATATAACACCAGCACGAATGCCTTCGGGGA
106578351 ATATAACACCAGCACGAATGCCTTCGGG
1 ATATAACACCAGCACGAATGCCTTCGGG
106578379 ACTTAGCCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (30 bp):
ATATAACACCAGCACGAATGCCTTCGGGGA
Found at i:106578409 original size:39 final size:39
Alignment explanation
Indices: 106578351--106578478 Score: 229
Period size: 39 Copynumber: 3.3 Consensus size: 39
106578341 CCTTCGGGGA
106578351 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
106578390 ATATAACACCAGCATGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
*
106578429 ATATAACACCAACACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
106578468 ATATAACACCA
1 ATATAACACCA
106578479 TTATAAAGTC
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.19
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
Found at i:106578622 original size:28 final size:28
Alignment explanation
Indices: 106578551--106578632 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
106578541 ATTTAATCAT
* * *
106578551 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACATTAAGTGCCATTC
*
106578579 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACATTAAGTGCCATTC
* * *
106578607 TCAATATTTCGTACATTGAGTACCAT
1 TCAATATTTCGCACATTAAGTGCCAT
106578633 ATTTGATTGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (28 bp):
TCAATATTTCGCACATTAAGTGCCATTC
Found at i:106584789 original size:40 final size:38
Alignment explanation
Indices: 106584729--106584814 Score: 136
Period size: 40 Copynumber: 2.2 Consensus size: 38
106584719 AAATCCAATC
*
106584729 ACCACCACAAAGCATGCGGGACTTTACGCCCGGATATAA
1 ACCAGCACAAAGCATGCGGGACTTTA-GCCCGGATATAA
*
106584768 TACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 -ACCAGCACAAAGCATGCGGGACTTTAGCCCGGATATAA
106584807 ACCAGCAC
1 ACCAGCAC
106584815 GAATGCCTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
38 8 0.18
39 12 0.27
40 24 0.55
ACGTcount: A:0.33, C:0.31, G:0.21, T:0.15
Consensus pattern (38 bp):
ACCAGCACAAAGCATGCGGGACTTTAGCCCGGATATAA
Found at i:106584858 original size:29 final size:29
Alignment explanation
Indices: 106584801--106584857 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 29
106584791 TTTAGCCCGG
106584801 ATATAAACCAGCACGAATGCCTTCGGGGA
1 ATATAAACCAGCACGAATGCCTTCGGGGA
106584830 ATATAACACCAGCACGAATGCCTTCGGG
1 ATATAA-ACCAGCACGAATGCCTTCGGG
106584858 ACTTAGCCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.18
Consensus pattern (29 bp):
ATATAAACCAGCACGAATGCCTTCGGGGA
Found at i:106584888 original size:39 final size:39
Alignment explanation
Indices: 106584830--106584957 Score: 204
Period size: 39 Copynumber: 3.3 Consensus size: 39
106584820 CCTTCGGGGA
106584830 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCTGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCTGG
* *
106584869 ATATAACACCAGCATGAATGCCTTCAGGACTTAG-CTAGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCT-GG
* *
106584908 ATATAACACCAACACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCTGG
106584947 ATATAACACCA
1 ATATAACACCA
106584958 TTATAAAGTC
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.02
39 78 0.96
40 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCTGG
Found at i:106585063 original size:28 final size:28
Alignment explanation
Indices: 106585030--106585096 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
106585020 ATTTAATCAT
** *
106585030 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCACACACTAAGTGCCATTC
* *
106585058 TCAATATCTCACACATTAAGTGCCATTC
1 TCAATATTTCACACACTAAGTGCCATTC
106585086 TCATATATTTC
1 TCA-ATATTTC
106585097 GTACACTGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.81
29 6 0.19
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (28 bp):
TCAATATTTCACACACTAAGTGCCATTC
Found at i:106587167 original size:38 final size:40
Alignment explanation
Indices: 106587023--106587276 Score: 337
Period size: 40 Copynumber: 6.5 Consensus size: 40
106587013 GGATGATAAT
*
106587023 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
106587062 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
106587102 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
106587143 T-CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
106587181 TCCGGG-TAAGTCCCGAA-GCATTTGTGCGAACT-A-TATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA
* *
106587218 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* *
106587258 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
106587277 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 8, Indels: 17
0.89 0.04 0.08
Matches are distributed among these distances:
37 10 0.05
38 58 0.29
39 45 0.23
40 84 0.42
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
Found at i:106587242 original size:77 final size:79
Alignment explanation
Indices: 106587023--106587276 Score: 326
Period size: 77 Copynumber: 3.3 Consensus size: 79
106587013 GGATGATAAT
*
106587023 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT-TCCGGGCTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AACTATATATCCGGGCTAAGTCCCGAAGGCAT
*
106587086 TTGTGCTAGTGACTA-A
63 TTGTGCGAGTGACTATA
**
106587102 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT-CGGGCTAAGT-CCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTA-TATATCCGGGCTAAGTCCCGAAGGCATT
*
106587165 TGTGCGAGTTACTATA
64 TGTGCGAGTGACTATA
106587181 TCCGGG-TAAGTCCCGAA-GCATTTGTGCGAACTATATATCCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTATATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
106587244 AGCGAGTGGCTATA
66 TGCGAGTGACTATA
* *
106587258 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
106587277 TACTTGGTTT
Statistics
Matches: 155, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
75 5 0.03
76 26 0.17
77 50 0.32
78 31 0.20
79 13 0.08
80 30 0.19
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTATATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTGACTATA
Found at i:106595120 original size:40 final size:40
Alignment explanation
Indices: 106595069--106595310 Score: 343
Period size: 40 Copynumber: 6.1 Consensus size: 40
106595059 GGATGATAAT
*
106595069 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
106595108 TTCCGGGCTAAGT--CGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
106595146 TTCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
106595186 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* *
106595226 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA
* *
106595266 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
106595306 TCCGG
1 TCCGG
106595311 TTAAAGCCCG
Statistics
Matches: 189, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
38 38 0.20
39 36 0.19
40 113 0.60
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
Done.