Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 342 of 438
Found at i:106934839 original size:7 final size:7
Alignment explanation
Indices: 106934827--106934862 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
106934817 TTATATGTAC
106934827 TAATAAA
1 TAATAAA
106934834 TAATAAA
1 TAATAAA
106934841 TAATAAAA
1 TAAT-AAA
*
106934849 TAATATA
1 TAATAAA
106934856 TAATAAA
1 TAATAAA
106934863 ATGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:106934851 original size:15 final size:15
Alignment explanation
Indices: 106934827--106934864 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
106934817 TTATATGTAC
106934827 TAAT-AAATAATAAA
1 TAATAAAATAATAAA
*
106934841 TAATAAAATAATATA
1 TAATAAAATAATAAA
106934856 TAATAAAAT
1 TAATAAAAT
106934865 GAAGATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAATAAAATAATAAA
Found at i:106934858 original size:19 final size:19
Alignment explanation
Indices: 106934832--106934988 Score: 63
Period size: 21 Copynumber: 7.7 Consensus size: 19
106934822 TGTACTAATA
106934832 AATA-ATAAATAATAAAAT
1 AATATATAAATAATAAAAT
* *
106934850 AATATATAATAAAATGAAGAT
1 AATATATAA-ATAAT-AAAAT
**
106934871 AATATAGGGAATAATATATAAT
1 AATATA-TAAATAATA-A-AAT
*
106934893 AAAATATATAATATATAATAA-
1 AATATATA-AATA-ATAA-AAT
**
106934914 AAGCTATAAATAA-AATATAT
1 AATATATAAATAATAA-A-AT
106934934 AATATATAAATAACATGATAAAT
1 AATATATAAAT-A-AT-A-AAAT
*
106934957 AATACATAAAT-A-AAAAT
1 AATATATAAATAATAAAAT
*
106934974 ATTATATATAATAAT
1 AATATATA-AATAAT
106934989 TTTACATGTC
Statistics
Matches: 105, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
17 10 0.10
18 12 0.11
19 7 0.07
20 19 0.18
21 22 0.21
22 17 0.16
23 15 0.14
24 2 0.02
25 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
AATATATAAATAATAAAAT
Found at i:106934893 original size:7 final size:7
Alignment explanation
Indices: 106934881--106934986 Score: 64
Period size: 7 Copynumber: 15.9 Consensus size: 7
106934871 AATATAGGGA
106934881 ATAATAT
1 ATAATAT
106934888 ATAATA-
1 ATAATAT
106934894 A-AATAT
1 ATAATAT
106934900 ATAATAT
1 ATAATAT
106934907 ATAATA-
1 ATAATAT
**
106934913 A-AAGCT
1 ATAATAT
106934919 ATAA-AT
1 ATAATAT
*
106934925 AAAATAT
1 ATAATAT
106934932 ATAATAT
1 ATAATAT
*
106934939 ATAAATAAC
1 AT-AAT-AT
* *
106934948 ATGATAA
1 ATAATAT
*
106934955 ATAATAC
1 ATAATAT
106934962 ATAA-AT
1 ATAATAT
*
106934968 A-AAAAT
1 ATAATAT
*
106934974 ATTATAT
1 ATAATAT
106934981 ATAATA
1 ATAATA
106934987 ATTTTACATG
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 8 0.11
6 13 0.17
7 47 0.62
8 5 0.07
9 3 0.04
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (7 bp):
ATAATAT
Found at i:106934984 original size:15 final size:15
Alignment explanation
Indices: 106934966--106935078 Score: 56
Period size: 15 Copynumber: 7.4 Consensus size: 15
106934956 TAATACATAA
106934966 ATAAAAATATTATAT
1 ATAAAAATATTATAT
* * *
106934981 ATAATAATTTTACATGT
1 ATAAAAATATT--ATAT
*
106934998 CTAAATAATATT-TAT
1 ATAAA-AATATTATAT
* *
106935013 AAAATAAATAATATAT
1 ATAA-AAATATTATAT
*
106935029 AT-AAAATATT-TAAA
1 ATAAAAATATTAT-AT
106935043 ATAAATAA-ATTATAT
1 ATAAA-AATATTATAT
*
106935058 AT-AAAATGTATATAT
1 ATAAAAATAT-TATAT
106935073 ATAAAA
1 ATAAAA
106935079 GGATTAAGAT
Statistics
Matches: 71, Mismatches: 15, Indels: 23
0.65 0.14 0.21
Matches are distributed among these distances:
13 3 0.04
14 12 0.17
15 34 0.48
16 11 0.15
17 6 0.08
18 5 0.07
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (15 bp):
ATAAAAATATTATAT
Found at i:106935036 original size:11 final size:11
Alignment explanation
Indices: 106935022--106935071 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
106935012 TAAAATAAAT
106935022 AATATATATAA
1 AATATATATAA
106935033 AATAT-T-TAA
1 AATATATATAA
106935042 AATA-A-ATAA
1 AATATATATAA
*
106935051 ATTATATATAA
1 AATATATATAA
*
106935062 AATGTATATA
1 AATATATATA
106935072 TATAAAAGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
9 13 0.41
10 2 0.06
11 17 0.53
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (11 bp):
AATATATATAA
Found at i:106935045 original size:20 final size:21
Alignment explanation
Indices: 106935022--106935071 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
106935012 TAAAATAAAT
*
106935022 AATATATATAAA-ATATTTAA
1 AATATATATAAATATATATAA
106935042 AATA-A-ATAAATTATATATAA
1 AATATATATAAA-TATATATAA
*
106935062 AATGTATATA
1 AATATATATA
106935072 TATAAAAGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
18 5 0.21
19 1 0.04
20 14 0.58
21 1 0.04
22 3 0.12
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
AATATATATAAATATATATAA
Found at i:106948664 original size:33 final size:34
Alignment explanation
Indices: 106948626--106948711 Score: 102
Period size: 33 Copynumber: 2.5 Consensus size: 34
106948616 ATACTCTCTG
*
106948626 TTTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
1 TTTGGTGTGTTGGTTGGATTAGCTCATATGAGCA
** * *
106948660 -TTGGTGTGTTGGAGGGATTGGCTCATGTGAGCA
1 TTTGGTGTGTTGGTTGGATTAGCTCATATGAGCA
*
106948693 TTTGGTGTATTTGGTTGGA
1 TTTGGTGT-GTTGGTTGGA
106948712 ATGACAATGT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
33 28 0.67
34 7 0.17
35 7 0.17
ACGTcount: A:0.14, C:0.07, G:0.37, T:0.42
Consensus pattern (34 bp):
TTTGGTGTGTTGGTTGGATTAGCTCATATGAGCA
Found at i:106951088 original size:43 final size:44
Alignment explanation
Indices: 106950945--106951101 Score: 164
Period size: 43 Copynumber: 3.6 Consensus size: 44
106950935 TGTGTTTTCG
** *
106950945 TGTAAGACCACATCTGGGACGCTGGCATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACGCTGGCATCGA-TATTTGATTTACA
* * * *
106950989 TGTAAGACCATGTCTGGGACATCT-GAATC-ATAATTGATTT-CG
1 TGTAAGACCATGTCTGGGAC-GCTGGCATCGATATTTGATTTACA
*
106951031 TGTAAGACCCTGTCTGGGACAG-TGGCATCGATATTTG-TTTACA
1 TGTAAGACCATGTCTGGGAC-GCTGGCATCGATATTTGATTTACA
*
106951074 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGCTGGCAT
106951102 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 39 0.41
44 22 0.23
45 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGCTGGCATCGATATTTGATTTACA
Found at i:106954052 original size:14 final size:14
Alignment explanation
Indices: 106954035--106954074 Score: 80
Period size: 14 Copynumber: 2.9 Consensus size: 14
106954025 CCACATTCCG
106954035 ACTATCACACATGC
1 ACTATCACACATGC
106954049 ACTATCACACATGC
1 ACTATCACACATGC
106954063 ACTATCACACAT
1 ACTATCACACAT
106954075 AGAAGATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.38, C:0.35, G:0.05, T:0.23
Consensus pattern (14 bp):
ACTATCACACATGC
Found at i:106959638 original size:33 final size:35
Alignment explanation
Indices: 106959579--106959658 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 35
106959569 AAATTAACCA
*
106959579 ATACAACAATCAAAATTCAAATAATCCA-TTCA-AT
1 ATACAA-AATCAAAAATCAAATAATCCACTTCACAT
*
106959613 ATACAAAA-CAAAAATCGAATCAATCCACTTCACAT
1 ATACAAAATCAAAAATCAAAT-AATCCACTTCACAT
*
106959648 ATTCAAAATCA
1 ATACAAAATCA
106959659 TTAAACAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
32 10 0.26
33 8 0.21
34 10 0.26
35 9 0.23
36 2 0.05
ACGTcount: A:0.53, C:0.23, G:0.01, T:0.24
Consensus pattern (35 bp):
ATACAAAATCAAAAATCAAATAATCCACTTCACAT
Found at i:106960399 original size:24 final size:24
Alignment explanation
Indices: 106960381--106960646 Score: 247
Period size: 24 Copynumber: 11.1 Consensus size: 24
106960371 TACATATTTA
106960381 CATTCAAATCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
*
106960405 CATAT-AAATCCGCACATATAGTGC
1 CAT-TCAAATCCGCACACATAGTGC
* *
106960429 CATACAAATTCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* * * * *
106960453 C-TT-AGTAATTCACATACATATTGA
1 CATTCA--AATCCGCACACATAGTGC
106960477 CATTCAAATCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
*
106960501 CATAT-AAATCCGCACATATAGTGC
1 CAT-TCAAATCCGCACACATAGTGC
* *
106960525 CATACAAATTCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* * * * *
106960549 C-TT-AGTAATTCACATACATATTGA
1 CATTCA--AATCCGCACACATAGTGC
106960573 CATTCAAATCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* * *
106960597 CATACAAATTCGTACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
**
106960621 CATTCAAATTAGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
106960645 CA
1 CA
106960647 AAGTCATTTC
Statistics
Matches: 196, Mismatches: 34, Indels: 24
0.77 0.13 0.09
Matches are distributed among these distances:
22 2 0.01
23 2 0.01
24 184 0.94
25 6 0.03
26 2 0.01
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:106960439 original size:72 final size:72
Alignment explanation
Indices: 106960314--106960448 Score: 171
Period size: 72 Copynumber: 1.9 Consensus size: 72
106960304 TCAAGCAAGG
* * * * * ** *
106960314 AAATTCGCACCCATAGTGCCATGTTAACCCGCACACATAGTGCCTTAGTAATTCACATACATATT
1 AAATCCGCACACATAGTGCCATATAAACCCGCACACATAGTGCCATACAAATTCACACACATATT
106960379 TACATTC
66 TACATTC
* * *
106960386 AAATCCGCACACATAGTGCCATATAAATCCGCACATATAGTGCCATACAAATTCGCACACATA
1 AAATCCGCACACATAGTGCCATATAAACCCGCACACATAGTGCCATACAAATTCACACACATA
106960449 GTGCCTTAGT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
72 52 1.00
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (72 bp):
AAATCCGCACACATAGTGCCATATAAACCCGCACACATAGTGCCATACAAATTCACACACATATT
TACATTC
Found at i:106960459 original size:96 final size:96
Alignment explanation
Indices: 106960343--106960645 Score: 543
Period size: 96 Copynumber: 3.2 Consensus size: 96
106960333 CATGTTAACC
*
106960343 CGCACACATAGTGCCTTAGTAATTCACATACATATTTACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
106960408 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
106960439 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
106960504 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
106960535 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
* * * * *
106960600 ACAAATTCGTACACATAGTGCCATTCAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
*
106960631 AGCACACATAGTGCC
1 CGCACACATAGTGCC
106960646 AAAGTCATTT
Statistics
Matches: 200, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 200 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (96 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
ATAAATCCGCACATATAGTGCCATACAAATT
Found at i:106960646 original size:48 final size:48
Alignment explanation
Indices: 106960313--106960646 Score: 328
Period size: 48 Copynumber: 7.0 Consensus size: 48
106960303 CTCAAGCAAG
* * * *
106960313 GAAATTCGCACCCATAGTGCCATGT-TAACCCGCACACATAGTGCCTTA
1 GAAATTCGCACACATAGTGCCAT-TCAAATCCGCACACATAGTGCCATA
* * * * **
106960361 GTAATTCACATACATATTTACATTCAAATCCGCACACATAGTGCCATA
1 GAAATTCGCACACATAGTGCCATTCAAATCCGCACACATAGTGCCATA
* * * * * *
106960409 TAAATCCGCACATATAGTGCCATACAAATTCGCACACATAGTGCCTTA
1 GAAATTCGCACACATAGTGCCATTCAAATCCGCACACATAGTGCCATA
* * * * *
106960457 GTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
1 GAAATTCGCACACATAGTGCCATTCAAATCCGCACACATAGTGCCATA
* * * * * *
106960505 TAAATCCGCACATATAGTGCCATACAAATTCGCACACATAGTGCCTTA
1 GAAATTCGCACACATAGTGCCATTCAAATCCGCACACATAGTGCCATA
* * * * *
106960553 GTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
1 GAAATTCGCACACATAGTGCCATTCAAATCCGCACACATAGTGCCATA
* * **
106960601 CAAATTCGTACACATAGTGCCATTCAAATTAGCACACATAGTGCCA
1 GAAATTCGCACACATAGTGCCATTCAAATCCGCACACATAGTGCCA
106960647 AAGTCATTTC
Statistics
Matches: 221, Mismatches: 64, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
47 1 0.00
48 220 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.26
Consensus pattern (48 bp):
GAAATTCGCACACATAGTGCCATTCAAATCCGCACACATAGTGCCATA
Found at i:106961090 original size:14 final size:14
Alignment explanation
Indices: 106961071--106961100 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
106961061 ATTACTTCAA
106961071 ATAAACACACATAT
1 ATAAACACACATAT
*
106961085 ATAAACACATATAT
1 ATAAACACACATAT
106961099 AT
1 AT
106961101 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAAACACACATAT
Found at i:106976802 original size:26 final size:25
Alignment explanation
Indices: 106976750--106976805 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
106976740 TCATAATTAT
* *
106976750 ATATATTATATAATAAGACCCATGC
1 ATATATTACATAATAAGACCCACGC
* *
106976775 ATATATGTACATAGTAAGATCCACGC
1 ATATAT-TACATAATAAGACCCACGC
106976801 ATATA
1 ATATA
106976806 ATAATATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (25 bp):
ATATATTACATAATAAGACCCACGC
Found at i:106979043 original size:26 final size:26
Alignment explanation
Indices: 106979014--106979117 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
106979004 ATTCCCATCT
* *
106979014 TGGAATATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
106979040 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
106979066 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
106979092 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
106979118 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:106979071 original size:52 final size:52
Alignment explanation
Indices: 106979014--106979117 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
106979004 ATTCCCATCT
106979014 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
*
106979066 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
106979118 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (52 bp):
TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
Found at i:106981159 original size:32 final size:32
Alignment explanation
Indices: 106981123--106981219 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
106981113 TGTATGCATT
106981123 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
**
106981155 TTAGCATTTTAATAGTTAATAAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106981187 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106981219 T
1 T
106981220 GATAAGCATT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:106982729 original size:26 final size:26
Alignment explanation
Indices: 106982700--106982752 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
106982690 TTTACAGTTT
106982700 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
106982726 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
106982752 T
1 T
106982753 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:106984380 original size:12 final size:12
Alignment explanation
Indices: 106984363--106984397 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
106984353 GGGGAAGAGA
106984363 GGTCGAGGCCGT
1 GGTCGAGGCCGT
106984375 GGTCGAGGCCGT
1 GGTCGAGGCCGT
106984387 GGTCGAGGCCG
1 GGTCGAGGCCG
106984398 AGGTAGTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.26, G:0.51, T:0.14
Consensus pattern (12 bp):
GGTCGAGGCCGT
Found at i:106989269 original size:32 final size:32
Alignment explanation
Indices: 106989233--106989329 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
106989223 TGTATGCATT
106989233 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
106989265 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106989297 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
106989329 T
1 T
106989330 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:106990837 original size:26 final size:26
Alignment explanation
Indices: 106990808--106990860 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
106990798 TTTACAGTTT
106990808 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
106990834 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
106990860 T
1 T
106990861 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:106993318 original size:16 final size:18
Alignment explanation
Indices: 106993274--106993327 Score: 108
Period size: 18 Copynumber: 3.0 Consensus size: 18
106993264 ACTAAAGTAA
106993274 CCTTAATATATTTATATC
1 CCTTAATATATTTATATC
106993292 CCTTAATATATTTATATC
1 CCTTAATATATTTATATC
106993310 CCTTAATATATTTATATC
1 CCTTAATATATTTATATC
106993328 AAAACATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
CCTTAATATATTTATATC
Found at i:106996418 original size:18 final size:18
Alignment explanation
Indices: 106996397--106996446 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
106996387 TAACAGTCAG
*
106996397 TTATTCAGTAACGATAAA
1 TTATTCAGTAACAATAAA
* *
106996415 TTATTCAGTAAAAATCAA
1 TTATTCAGTAACAATAAA
106996433 TTATTCAGTAACAA
1 TTATTCAGTAACAA
106996447 ATTTTTTTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.34
Consensus pattern (18 bp):
TTATTCAGTAACAATAAA
Found at i:106996485 original size:18 final size:18
Alignment explanation
Indices: 106996458--106996492 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
106996448 TTTTTTTACG
*
106996458 CAGTAGCAGTCAGTTATA
1 CAGTAACAGTCAGTTATA
106996476 CAGTAACAGTCAGTTAT
1 CAGTAACAGTCAGTTAT
106996493 TTAGAAGCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (18 bp):
CAGTAACAGTCAGTTATA
Found at i:106997871 original size:17 final size:20
Alignment explanation
Indices: 106997851--106997890 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
106997841 ATTTATGTTC
106997851 ATTAAAT-TAT-TAT-TATT
1 ATTAAATATATATATATATT
*
106997868 ATTATATATATATATATATT
1 ATTAAATATATATATATATT
106997888 ATT
1 ATT
106997891 TATACTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 3 0.16
20 7 0.37
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTAAATATATATATATATT
Found at i:106998182 original size:3 final size:3
Alignment explanation
Indices: 106998174--106998265 Score: 166
Period size: 3 Copynumber: 30.3 Consensus size: 3
106998164 TAAATATCTT
106998174 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
106998222 ATA ACA ATA ATA ATA ATA ATAA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA A
106998266 AAACATTAAT
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
3 83 0.97
4 3 0.03
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:106998435 original size:16 final size:13
Alignment explanation
Indices: 106998403--106998437 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
106998393 ATATGAAACC
106998403 ATAATAATAATTA
1 ATAATAATAATTA
106998416 ATAATAATAATT-
1 ATAATAATAATTA
106998428 ATATATAATA
1 ATA-ATAATA
106998438 TATAAATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.14
13 18 0.86
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATAATAATTA
Found at i:107002004 original size:25 final size:25
Alignment explanation
Indices: 107001976--107002023 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
107001966 TTATACCATG
* * *
107001976 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
107002001 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
107002024 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:107002092 original size:20 final size:20
Alignment explanation
Indices: 107002066--107002146 Score: 144
Period size: 20 Copynumber: 4.0 Consensus size: 20
107002056 ATAAATATGG
*
107002066 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
107002086 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
107002106 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
107002126 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
107002146 T
1 T
107002147 GTAATCATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:107002107 original size:11 final size:11
Alignment explanation
Indices: 107002091--107002146 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
107002081 CATGACATGT
107002091 ATGATATGCAC
1 ATGATATGCAC
*
107002102 ATGATATG--T
1 ATGATATGCAC
107002111 ATGATATGCAC
1 ATGATATGCAC
*
107002122 ATGATATG--T
1 ATGATATGCAC
107002131 ATGATATGCAC
1 ATGATATGCAC
107002142 ATGAT
1 ATGAT
107002147 GTAATCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:107002116 original size:9 final size:9
Alignment explanation
Indices: 107002082--107002138 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
107002072 TGAGATGCAC
*
107002082 ATGACATGT
1 ATGATATGT
*
107002091 ATGATATGCAC
1 ATGATATG--T
107002102 ATGATATGT
1 ATGATATGT
*
107002111 ATGATATGCAC
1 ATGATATG--T
107002122 ATGATATGT
1 ATGATATGT
107002131 ATGATATG
1 ATGATATG
107002139 CACATGATGT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 23 0.59
11 16 0.41
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:107002223 original size:24 final size:24
Alignment explanation
Indices: 107002196--107002338 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
107002186 GAGGAAGTGA
107002196 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
107002220 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
107002244 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
107002267 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
107002291 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
107002315 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
107002339 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:107002289 original size:47 final size:47
Alignment explanation
Indices: 107002196--107002338 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
107002186 GAGGAAGTGA
107002196 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
107002244 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
107002291 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
107002339 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:107002312 original size:71 final size:72
Alignment explanation
Indices: 107002196--107002339 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
107002186 GAGGAAGTGA
*
107002196 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
107002259 CCAGTTAT
65 CCAGTTAT
** * *
107002267 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
107002332 CAGTTAT
66 CAGTTAT
107002339 A
1 A
107002340 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:107002565 original size:31 final size:31
Alignment explanation
Indices: 107002530--107002593 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
107002520 CGTTTACAGT
107002530 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
107002561 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
107002592 AA
1 AA
107002594 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:107003701 original size:45 final size:44
Alignment explanation
Indices: 107003547--107003713 Score: 176
Period size: 45 Copynumber: 3.6 Consensus size: 44
107003537 TGTGTGAGCT
* * *
107003547 AGTGTAAGACATGTCTAGGACATGCATCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCTCGA-GATGA-AGCC
* * *
107003593 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GCCTCGAGATGAAGC-C
*
107003640 TAGTGTAGGACATGTCTGGGACATGCATCGCCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATG-AAGCC
107003686 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
107003714 AGTTATGAAA
Statistics
Matches: 102, Mismatches: 11, Indels: 17
0.78 0.08 0.13
Matches are distributed among these distances:
45 35 0.34
46 18 0.18
47 31 0.30
48 16 0.16
49 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATGAAGCC
Found at i:107009585 original size:40 final size:40
Alignment explanation
Indices: 107009499--107009611 Score: 115
Period size: 40 Copynumber: 2.8 Consensus size: 40
107009489 GACTATGTTC
*
107009499 AGCACTAAGTGTGCGGTTCGAAATAGCTTTGGCTACAAATG
1 AGCACTAAGTGTGCGGTTCGAAATAGCTTCGGCTA-AAATG
* *
107009540 A-CACTAAGTGTGCGAGTT-GGAATAGCTTCGGCT-ATATG
1 AGCACTAAGTGTGCG-GTTCGAAATAGCTTCGGCTAAAATG
* * *
107009578 AGGCACTAAGTGTGTGATATCGAGATAGCTTCGG
1 A-GCACTAAGTGTGCGGT-TCGAAATAGCTTCGG
107009612 TTTATTGAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
38 5 0.08
39 1 0.02
40 39 0.65
41 15 0.25
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (40 bp):
AGCACTAAGTGTGCGGTTCGAAATAGCTTCGGCTAAAATG
Found at i:107015122 original size:40 final size:40
Alignment explanation
Indices: 107015077--107015243 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107015067 CGGAATATAA
107015077 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
107015117 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
107015157 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
107015197 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107015236 CCGGATAT
1 CCGGATAT
107015244 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107015227 original size:80 final size:79
Alignment explanation
Indices: 107015077--107015243 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
107015067 CGGAATATAA
* *
107015077 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
107015142 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
107015157 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
107015219 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
107015236 CCGGATAT
1 CCGGATAT
107015244 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:107016085 original size:17 final size:19
Alignment explanation
Indices: 107016062--107016107 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
107016052 AAGAAGCATG
107016062 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
107016080 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
107016098 AATCATGCTC
1 AATCATGCTC
107016108 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:107023119 original size:40 final size:40
Alignment explanation
Indices: 107023074--107023240 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107023064 CGGAATATAA
107023074 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
107023114 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
107023154 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
107023194 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107023233 CCGGATAT
1 CCGGATAT
107023241 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107023224 original size:80 final size:79
Alignment explanation
Indices: 107023074--107023240 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
107023064 CGGAATATAA
* *
107023074 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
107023139 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
107023154 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
107023216 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
107023233 CCGGATAT
1 CCGGATAT
107023241 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:107024085 original size:17 final size:19
Alignment explanation
Indices: 107024062--107024107 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
107024052 AAGAAGCATG
107024062 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
107024080 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
107024098 AATCATGCTC
1 AATCATGCTC
107024108 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:107027152 original size:42 final size:41
Alignment explanation
Indices: 107027052--107027189 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 41
107027042 TGTGATTTTG
* *
107027052 TGTAAGACCACT-TCTGGGACGTTGGAATCG-ATTTGAGATTTACA
1 TGTAAGACC-CTGTCTGGGAC-ATGGCATCGTATTT--GATTT-CA
* * *
107027096 TGTAAGGCCATGTCTGGGACATCGGCATCGTATTTGATTTCG
1 TGTAAGACCCTGTCTGGGACAT-GGCATCGTATTTGATTTCA
* *
107027138 TGTAAGACCCTGTCTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTGGGACA-TGGCATCG-TATTTGATTTCA
107027181 TGTAAGACC
1 TGTAAGACC
107027190 ACATTTAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
42 26 0.33
43 27 0.34
44 22 0.28
45 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (41 bp):
TGTAAGACCCTGTCTGGGACATGGCATCGTATTTGATTTCA
Found at i:107029117 original size:101 final size:101
Alignment explanation
Indices: 107028809--107029321 Score: 535
Period size: 101 Copynumber: 5.1 Consensus size: 101
107028799 CATTCAGACG
* * * *
107028809 TAAGACCATGGTTAGACCATGGAAGTGTATATATATATATATATTACCATAGCTGGGCTATGGCA
1 TAAGACCATGGTTGGACCATGGCAGTG----TATATATATA-A-GACCATAGTTGGGCTATGGCA
* *
107028874 TTCTGATGGTAAGACCATAATCGGGTTATGGCACTATGAGCA
60 TTCTGATGGTAAGACCATAACCGGGTTATGGCACTATGAACA
* * * * * * *
107028916 TAAGACCATGGTTGGACTATTGTATTGTATATATATATATATAACATAGTTGGGCTATGGCATTT
1 TAAGACCATGGTTGGACCATGGCA--GTGTATATATATA-AGACCATAGTTGGGCTATGGCATTC
* * * *
107028981 TGATGGTAAGACCATAACTGAGTTATGACATTATGAACA
63 TGATGGTAAGACCATAACCGGGTTATGGCACTATGAACA
* * * * * * * *
107029020 TAAGATCATTGTTGGACCATGGCAATGTATATATACAAGACCATAGCTAGGCTATGGCGTTCTAA
1 TAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTGA
* *
107029085 TGTTAACACCATAACCGGGTTATGGCACTATGAACA
66 TGGTAAGACCATAACCGGGTTATGGCACTATGAACA
* *
107029121 TAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGTTGGGATATGGCATTCTAA
1 TAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTGA
* * * *
107029186 TGGTAATACCATAACCGAGTTATGGCAGTATGAACG
66 TGGTAAGACCATAACCGGGTTATGGCACTATGAACA
* *
107029222 T---A--A------GACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTGG
1 TAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTGA
* *
107029276 TGGTAAGACCATAACCGGGTTATGGCACTATAAACG
66 TGGTAAGACCATAACCGGGTTATGGCACTATGAACA
107029312 TAAGACCATG
1 TAAGACCATG
107029322 CCAGGGCCAT
Statistics
Matches: 341, Mismatches: 56, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
90 80 0.23
93 1 0.00
95 1 0.00
96 1 0.00
98 1 0.00
101 140 0.41
102 10 0.03
104 73 0.21
105 12 0.04
107 20 0.06
109 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTGA
TGGTAAGACCATAACCGGGTTATGGCACTATGAACA
Found at i:107029288 original size:90 final size:90
Alignment explanation
Indices: 107029034--107029321 Score: 315
Period size: 90 Copynumber: 3.1 Consensus size: 90
107029024 ATCATTGTTG
* * * * * * *
107029034 GACCATGGCAATGTATATATACAAGACCATAGCTAGGCTATGGCGTTCTAATGTTAACACCATAA
1 GACCATGGCAGTGTATATATATAAGACCATAGTTAGGATATGGCATTCTAATGGTAAGACCATAA
* **
107029099 CCGGGTTATGGCACTATGAACATAAGACCATGGTTG
66 CCGAGTTATGGCAC--T----ATAA-A-C---GTAA
* *
107029135 GACCATGGCAGTGTATATATATAAGACCATAGTTGGGATATGGCATTCTAATGGTAATACCATAA
1 GACCATGGCAGTGTATATATATAAGACCATAGTTAGGATATGGCATTCTAATGGTAAGACCATAA
* *
107029200 CCGAGTTATGGCAGTATGAACGTAA
66 CCGAGTTATGGCACTATAAACGTAA
* **
107029225 GACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTGGTGGTAAGACCATAA
1 GACCATGGCAGTGTATATATATAAGACCATAGTTAGGATATGGCATTCTAATGGTAAGACCATAA
*
107029290 CCGGGTTATGGCACTATAAACGTAA
66 CCGAGTTATGGCACTATAAACGTAA
107029315 GACCATG
1 GACCATG
107029322 CCAGGGCCAT
Statistics
Matches: 166, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
90 91 0.55
93 1 0.01
94 1 0.01
95 3 0.02
99 1 0.01
101 69 0.42
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.26
Consensus pattern (90 bp):
GACCATGGCAGTGTATATATATAAGACCATAGTTAGGATATGGCATTCTAATGGTAAGACCATAA
CCGAGTTATGGCACTATAAACGTAA
Found at i:107033029 original size:43 final size:43
Alignment explanation
Indices: 107032959--107033041 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
107032949 ATTAGACGTT
* * *
107032959 ACATATATCATGAACTTGCACCACTCAACAAGTTCGGATTCTC
1 ACATATATCACGAACTCGCACCACTCAACAAGCTCGGATTCTC
* * *
107033002 ACATATATCACGAACTCGGACCGCTCAACGAGCTCGGATT
1 ACATATATCACGAACTCGCACCACTCAACAAGCTCGGATT
107033042 TCTTAATTCC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
ACATATATCACGAACTCGCACCACTCAACAAGCTCGGATTCTC
Found at i:107035718 original size:6 final size:7
Alignment explanation
Indices: 107035700--107035742 Score: 51
Period size: 6 Copynumber: 6.9 Consensus size: 7
107035690 TGTAGATGAA
107035700 TCATTTC
1 TCATTTC
107035707 TCATTT-
1 TCATTTC
107035713 TCATTTC
1 TCATTTC
107035720 T-ATTTC
1 TCATTTC
107035726 T-ATTTC
1 TCATTTC
107035732 -CATTTC
1 TCATTTC
107035738 -CATTT
1 TCATTT
107035743 TGAGAAAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 27 0.79
7 7 0.21
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.60
Consensus pattern (7 bp):
TCATTTC
Found at i:107035735 original size:18 final size:19
Alignment explanation
Indices: 107035701--107035742 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
107035691 GTAGATGAAT
*
107035701 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTCCATTTC
*
107035720 TATTTCT-ATTTCCATTTC
1 CATTTCTCATTTCCATTTC
107035738 CATTT
1 CATTT
107035743 TGAGAAAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.60
Consensus pattern (19 bp):
CATTTCTCATTTCCATTTC
Found at i:107040719 original size:15 final size:15
Alignment explanation
Indices: 107040663--107040727 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
107040653 TAAAGATAAC
*
107040663 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
107040677 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
107040692 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
107040707 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
107040722 AAGAAA
1 AAGAAA
107040728 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:107040729 original size:30 final size:31
Alignment explanation
Indices: 107040663--107040731 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
107040653 TAAAGATAAC
*
107040663 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
107040693 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
107040722 AAGAAACCCA
1 AAGAAACCCA
107040732 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:107042149 original size:2 final size:2
Alignment explanation
Indices: 107042142--107042172 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
107042132 TATTATCACT
107042142 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107042173 CATAAACTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107043939 original size:101 final size:99
Alignment explanation
Indices: 107043756--107043939 Score: 233
Period size: 101 Copynumber: 1.8 Consensus size: 99
107043746 CTGGTACGCA
* * * ** *
107043756 TAGTAGCCTGCACATAGTACTATACATGCGACCAATTATCCGGTACATGTAGTAGCCTGAACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGAACATA
*
107043821 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * *
107043855 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACA
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCAGGTACACATAGTAGCCTGAACA
*
107043920 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
107043940 CACAATAGGT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
99 27 0.39
100 3 0.04
101 40 0.57
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGAACATA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:107045052 original size:13 final size:13
Alignment explanation
Indices: 107045034--107045059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107045024 ATGAGCAAAA
107045034 TTGGCTTTTAATT
1 TTGGCTTTTAATT
107045047 TTGGCTTTTAATT
1 TTGGCTTTTAATT
107045060 CCTTTTACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.15, T:0.62
Consensus pattern (13 bp):
TTGGCTTTTAATT
Found at i:107049820 original size:5 final size:5
Alignment explanation
Indices: 107049796--107049843 Score: 50
Period size: 5 Copynumber: 10.4 Consensus size: 5
107049786 ATAAAGTATT
* *
107049796 AATAA AATGA AA-AC AATAA AAT-A AAT-A AATAA AATAA AAT-A AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
107049842 AA
1 AA
107049844 ATTTCTAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
4 14 0.39
5 22 0.61
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:107049824 original size:9 final size:9
Alignment explanation
Indices: 107049810--107049843 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
107049800 AAATGAAAAC
107049810 AATAAAATA
1 AATAAAATA
107049819 AAT-AAATAA
1 AATAAAAT-A
107049828 AATAAAATA
1 AATAAAATA
107049837 AATAAAA
1 AATAAAA
107049844 ATTTCTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 4 0.17
9 15 0.65
10 4 0.17
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AATAAAATA
Found at i:107049835 original size:14 final size:14
Alignment explanation
Indices: 107049796--107049843 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
107049786 ATAAAGTATT
*
107049796 AATAAAATGAAAA-C
1 AATAAAAT-AAAATA
107049810 AATAAAAT-AAATA
1 AATAAAATAAAATA
107049823 AATAAAATAAAATA
1 AATAAAATAAAATA
107049837 AATAAAA
1 AATAAAA
107049844 ATTTCTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 3 0.10
13 8 0.26
14 20 0.65
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (14 bp):
AATAAAATAAAATA
Found at i:107051417 original size:13 final size:14
Alignment explanation
Indices: 107051399--107051428 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
107051389 AAATAAACAG
107051399 TAAATAAATTAT-A
1 TAAATAAATTATCA
107051412 TAAATAAATTATCA
1 TAAATAAATTATCA
107051426 TAA
1 TAA
107051429 TTAGCTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (14 bp):
TAAATAAATTATCA
Found at i:107055035 original size:30 final size:29
Alignment explanation
Indices: 107054960--107055034 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 29
107054950 CGTTTAATTA
*
107054960 ATTTTTTAAAATTTTAAAATATTAAAAAT
1 ATTTTTTAAAATTTTTAAATATTAAAAAT
* * * *
107054989 ATTTTTTAACAGTTTTTAATTTTTAAAAGT
1 ATTTTTTAA-AATTTTTAAATATTAAAAAT
*
107055019 TTTTTTTAAAATTTTT
1 ATTTTTTAAAATTTTT
107055035 TTCGAATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 15 0.39
30 23 0.61
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (29 bp):
ATTTTTTAAAATTTTTAAATATTAAAAAT
Found at i:107064098 original size:40 final size:40
Alignment explanation
Indices: 107064053--107064220 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 40
107064043 CGGAATATAA
107064053 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
107064093 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
107064133 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
107064173 CCGGATATAAATTC-C-AGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATAT-AA-TCACTAGCACAAATGCCTTCGGGTCTTAGC
107064213 CCGGATAT
1 CCGGATAT
107064221 CATTCAATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 104 0.96
41 2 0.02
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107072118 original size:40 final size:40
Alignment explanation
Indices: 107072073--107072239 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107072063 CGGAATATAA
107072073 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
107072113 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
107072153 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
107072193 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107072232 CCGGATAT
1 CCGGATAT
107072240 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107080234 original size:40 final size:40
Alignment explanation
Indices: 107080067--107080234 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
107080057 TGGAATATAA
* ** *
107080067 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAACACCAGCACAATTGCCTTCGGGTCTTAGC
*
107080107 CCGGATAGAATA-ACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAA-ACAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
** * *
107080147 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAACACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
107080187 CCGGATATAAATTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAACACCAGCACAATTGCCTTCGGGTCTTAGC
107080227 CCGGATAT
1 CCGGATAT
107080235 CATTCAATTT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAAACACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:107086273 original size:48 final size:48
Alignment explanation
Indices: 107086221--107086313 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
107086211 CCAATGTACC
* *
107086221 TAATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
1 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATT
*
107086269 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAGTATTGTAATGT
1 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGT
107086314 TGTAATGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51
Consensus pattern (48 bp):
TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATT
Found at i:107086683 original size:33 final size:33
Alignment explanation
Indices: 107086595--107086684 Score: 99
Period size: 33 Copynumber: 2.7 Consensus size: 33
107086585 AACTTGAATA
*
107086595 GGGAGGAGTGTTGTACTGCGGTGGATATGACCC
1 GGGAGGAGTGTTGTACTGCGGTGGATACGACCC
* * ** * **
107086628 AGAAGGAGTGGAGTAATGCGGTGGATACGGGCC
1 GGGAGGAGTGTTGTACTGCGGTGGATACGACCC
*
107086661 GGGAGGAGTGTTGTACTACGGTGG
1 GGGAGGAGTGTTGTACTGCGGTGG
107086685 TGCTGGACTA
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.21, C:0.12, G:0.46, T:0.21
Consensus pattern (33 bp):
GGGAGGAGTGTTGTACTGCGGTGGATACGACCC
Found at i:107087512 original size:14 final size:14
Alignment explanation
Indices: 107087493--107087526 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
107087483 AAATTACATG
107087493 TTAGAATAGTATCA
1 TTAGAATAGTATCA
107087507 TTAGAATAGTATCA
1 TTAGAATAGTATCA
107087521 TTAGAA
1 TTAGAA
107087527 AAAAAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:107089345 original size:46 final size:46
Alignment explanation
Indices: 107089293--107089468 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
107089283 TATTTGGGCA
* *
107089293 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
107089339 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
107089384 CATCCGAGCTCGTTGAGTTGAGTCCGAGCTCAGTTATGGATGCAAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
107089432 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107089469 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.26
48 5 0.05
50 6 0.06
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:107089448 original size:93 final size:93
Alignment explanation
Indices: 107089289--107089461 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
107089279 AGGATATTTG
* * *
107089289 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGCTCACTTATGGATGCAAACGTCCGAGCTCGTTGAG
107089354 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
107089382 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGCTCAGTTATGGATGCAAACG-CTCGAGCTCGTTGA
1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGCTCACTTATGGATGCAAACGTC-CGAGCTCGTTGA
107089446 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
107089462 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.20, C:0.21, G:0.32, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTCGAGTCCGAGCTCACTTATGGATGCAAACGTCCGAGCTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:107090235 original size:27 final size:27
Alignment explanation
Indices: 107090205--107090283 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
107090195 ATATTTAGTT
107090205 GAAGCTTAATGAATCTATTTTCATGTG
1 GAAGCTTAATGAATCTATTTTCATGTG
* ** *
107090232 GAAG--AAAT-AAAATA-TTT-A-GTT
1 GAAGCTTAATGAATCTATTTTCATGTG
107090253 GAAGCTTAATGAATCTATTTTCATGTG
1 GAAGCTTAATGAATCTATTTTCATGTG
107090280 GAAG
1 GAAG
107090284 AACCAAAATG
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
21 6 0.16
22 1 0.03
23 6 0.16
24 8 0.21
25 6 0.16
26 1 0.03
27 10 0.26
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.37
Consensus pattern (27 bp):
GAAGCTTAATGAATCTATTTTCATGTG
Found at i:107090259 original size:48 final size:48
Alignment explanation
Indices: 107090189--107090285 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
107090179 TTAGATGATG
107090189 AATAAAATATTTAGTTGAAGCTTAATGAATCTATTTTCATGTGGAAGA
1 AATAAAATATTTAGTTGAAGCTTAATGAATCTATTTTCATGTGGAAGA
107090237 AATAAAATATTTAGTTGAAGCTTAATGAATCTATTTTCATGTGGAAGA
1 AATAAAATATTTAGTTGAAGCTTAATGAATCTATTTTCATGTGGAAGA
107090285 A
1 A
107090286 CCAAAATGGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.37
Consensus pattern (48 bp):
AATAAAATATTTAGTTGAAGCTTAATGAATCTATTTTCATGTGGAAGA
Found at i:107090271 original size:24 final size:24
Alignment explanation
Indices: 107090196--107090272 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
107090186 ATGAATAAAA
107090196 TATTTAGTTGAAGCTTAATGAATC
1 TATTTAGTTGAAGCTTAATGAATC
* * **
107090220 TATTTTCATGTGGAAG--AAAT-AAAA
1 TA-TTT-A-GTTGAAGCTTAATGAATC
107090244 TATTTAGTTGAAGCTTAATGAATC
1 TATTTAGTTGAAGCTTAATGAATC
107090268 TATTT
1 TATTT
107090273 TCATGTGGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 12
0.66 0.14 0.20
Matches are distributed among these distances:
21 6 0.15
22 1 0.03
23 6 0.15
24 13 0.33
25 6 0.15
26 1 0.03
27 6 0.15
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (24 bp):
TATTTAGTTGAAGCTTAATGAATC
Found at i:107092295 original size:31 final size:30
Alignment explanation
Indices: 107092260--107092317 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
107092250 TCTCCTTTCG
*
107092260 TTTTCTTTTTTTTTTCCCTTCTCTTTCTTGT
1 TTTTCTATTTTTTTT-CCTTCTCTTTCTTGT
*
107092291 TTTTCTATTTTTTTTCTTTCTCTTTCT
1 TTTTCTATTTTTTTTCCTTCTCTTTCT
107092318 CCTTCCCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.76
Consensus pattern (30 bp):
TTTTCTATTTTTTTTCCTTCTCTTTCTTGT
Found at i:107093167 original size:18 final size:19
Alignment explanation
Indices: 107093146--107093189 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
107093136 TTTTTTAAGT
107093146 TTTATATTTT-TTT-TCTTA
1 TTTATATTTTGTTTAT-TTA
107093164 TTTA-ATTTTGTTTATTTA
1 TTTATATTTTGTTTATTTA
107093182 TTT-TATTT
1 TTTATATTT
107093190 AATTTTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 5 0.22
18 17 0.74
19 1 0.04
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTATATTTTGTTTATTTA
Found at i:107093167 original size:25 final size:25
Alignment explanation
Indices: 107093120--107093195 Score: 77
Period size: 23 Copynumber: 3.1 Consensus size: 25
107093110 TGTCTTTTTC
* *
107093120 TTTATTTTTTTTTTCTTTTTTTAAGT
1 TTTATATTTTTTTTCTTTATTTAA-T
107093146 TTTATATTTTTTTTC-TTATTTAAT
1 TTTATATTTTTTTTCTTTATTTAAT
* * *
107093170 TTTGT-TTATTTAT-TTTATTTAAT
1 TTTATATTTTTTTTCTTTATTTAAT
107093193 TTT
1 TTT
107093196 TGTTATTAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
23 18 0.41
24 5 0.11
25 7 0.16
26 14 0.32
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (25 bp):
TTTATATTTTTTTTCTTTATTTAAT
Found at i:107093180 original size:26 final size:26
Alignment explanation
Indices: 107093120--107093172 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
107093110 TGTCTTTTTC
* *
107093120 TTTATTTTTTTTTTCTTTTTTTAAGT
1 TTTATATTTTTTTTCTTTATTTAAGT
107093146 TTTATATTTTTTTTC-TTATTTAA-T
1 TTTATATTTTTTTTCTTTATTTAAGT
107093170 TTT
1 TTT
107093173 GTTTATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.16
25 7 0.28
26 14 0.56
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (26 bp):
TTTATATTTTTTTTCTTTATTTAAGT
Found at i:107093191 original size:23 final size:23
Alignment explanation
Indices: 107093161--107093209 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
107093151 ATTTTTTTTC
*
107093161 TTATTTAA-TTTTGTTTATTTATT
1 TTATTTAATTTTTG-TTATTAATT
107093184 TTATTTAATTTTTGTTATTAATT
1 TTATTTAATTTTTGTTATTAATT
107093207 TTA
1 TTA
107093210 AAAATTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (23 bp):
TTATTTAATTTTTGTTATTAATT
Found at i:107093286 original size:23 final size:26
Alignment explanation
Indices: 107093228--107093287 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 26
107093218 GAAATGTATA
*
107093228 TTTAAATTTTTTTATAATATATATTT
1 TTTAAATTATTTTATAATATATATTT
107093254 TTTAAA--ATTTTA-AATAT-TA-TT
1 TTTAAATTATTTTATAATATATATTT
107093275 TTTAAATTATTTT
1 TTTAAATTATTTT
107093288 TTAAAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 8 0.26
22 2 0.06
23 10 0.32
24 5 0.16
26 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTAAATTATTTTATAATATATATTT
Found at i:107093291 original size:33 final size:34
Alignment explanation
Indices: 107093228--107093318 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 34
107093218 GAAATGTATA
107093228 TTTAAAT-TT-TTTTATAATATATATTTTTTAAAAT
1 TTTAAATATTATTTT-TAA-ATATATTTTTTAAAAT
107093262 TTTAAATATTATTTTTAAAT-TATTTTTTAAAAT
1 TTTAAATATTATTTTTAAATATATTTTTTAAAAT
107093295 TTTAAATATATATTTTTGAAATAT
1 TTTAAATAT-TATTTTT-AAATAT
107093319 GATCTTTCAA
Statistics
Matches: 52, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
33 22 0.42
34 16 0.31
35 9 0.17
36 5 0.10
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (34 bp):
TTTAAATATTATTTTTAAATATATTTTTTAAAAT
Found at i:107093296 original size:21 final size:23
Alignment explanation
Indices: 107093272--107093316 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 23
107093262 TTTAAATATT
107093272 ATTTTTAAAT-TAT-TTTTTAAA
1 ATTTTTAAATATATATTTTTAAA
*
107093293 A-TTTTAAATATATATTTTTGAA
1 ATTTTTAAATATATATTTTTAAA
107093315 AT
1 AT
107093317 ATGATCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
20 8 0.40
21 4 0.20
22 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
ATTTTTAAATATATATTTTTAAA
Found at i:107093316 original size:22 final size:20
Alignment explanation
Indices: 107093274--107093316 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
107093264 TAAATATTAT
107093274 TTTTAAATTATTTTTTAAAA
1 TTTTAAATTATTTTTTAAAA
*
107093294 TTTTAAATATATATTTTTGAAA
1 TTTTAAAT-TAT-TTTTTAAAA
107093316 T
1 T
107093317 ATGATCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 9 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTTAAATTATTTTTTAAAA
Found at i:107093431 original size:13 final size:13
Alignment explanation
Indices: 107093398--107093427 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
107093388 TTTAAACATT
107093398 TAAAATTTTTAAA
1 TAAAATTTTTAAA
107093411 TAAAATTTTT-AA
1 TAAAATTTTTAAA
107093423 TAAAA
1 TAAAA
107093428 ATTTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAAATTTTTAAA
Found at i:107093443 original size:10 final size:10
Alignment explanation
Indices: 107093412--107093467 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
107093402 ATTTTTAAAT
*
107093412 AAAATTTTTA
1 AAAATATTTA
*
107093422 ATAAAAATTTA
1 A-AAATATTTA
107093433 AAAATATTTA
1 AAAATATTTA
* *
107093443 AACATCTTTA
1 AAAATATTTA
*
107093453 AAAATAATTA
1 AAAATATTTA
107093463 AAAAT
1 AAAAT
107093468 GATAATTTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
10 29 0.78
11 8 0.22
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATATTTA
Found at i:107093622 original size:41 final size:39
Alignment explanation
Indices: 107093567--107093701 Score: 121
Period size: 36 Copynumber: 3.7 Consensus size: 39
107093557 TTTAATTTTT
*
107093567 AAATAATATTAAAAATATATATTTAATATTAAATTTAGAA-
1 AAATAATATCAAAAATATATATTTAATA--AAATTTAGAAG
*
107093607 AAATTAATATCAAAAATATAT-TTT--TAAAATTTATAAG
1 AAA-TAATATCAAAAATATATATTTAATAAAATTTAGAAG
* *
107093644 AAATAATTTCAAATATATATA-TT--TAAAATTTA-AA-
1 AAATAATATCAAAAATATATATTTAATAAAATTTAGAAG
*
107093678 AAATAAT-TTAAAAATA-ATATTTAA
1 AAATAATATCAAAAATATATATTTAA
107093702 AATTTAAAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
32 3 0.04
33 9 0.11
34 7 0.08
35 2 0.02
36 35 0.42
37 3 0.04
38 2 0.02
40 6 0.07
41 16 0.19
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (39 bp):
AAATAATATCAAAAATATATATTTAATAAAATTTAGAAG
Found at i:107093656 original size:36 final size:34
Alignment explanation
Indices: 107093597--107093714 Score: 159
Period size: 36 Copynumber: 3.4 Consensus size: 34
107093587 ATTTAATATT
* *
107093597 AAATTTAGAAAAATTAATATCAAAAATATATTTTTA
1 AAATTTA-AAAAA-TAATTTCAAAAATATATATTTA
*
107093633 AAATTTATAAGAAATAATTTCAAATATATATATTTA
1 AAATTTA-AA-AAATAATTTCAAAAATATATATTTA
107093669 AAATTTAAAAAATAATTT-AAAAATA-ATATTTA
1 AAATTTAAAAAATAATTTCAAAAATATATATTTA
107093701 AAATTTAAAAAATA
1 AAATTTAAAAAATA
107093715 TATATTATAA
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
32 21 0.28
33 6 0.08
34 9 0.12
35 2 0.03
36 35 0.46
37 3 0.04
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (34 bp):
AAATTTAAAAAATAATTTCAAAAATATATATTTA
Found at i:107093705 original size:20 final size:23
Alignment explanation
Indices: 107093682--107093726 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
107093672 TTTAAAAAAT
107093682 AATTT-AAAAATA-ATATT-TAA
1 AATTTAAAAAATATATATTATAA
107093702 AATTTAAAAAATATATATTATAA
1 AATTTAAAAAATATATATTATAA
107093725 AA
1 AA
107093727 CATTTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.23
21 7 0.32
22 5 0.23
23 5 0.23
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
AATTTAAAAAATATATATTATAA
Found at i:107093771 original size:5 final size:5
Alignment explanation
Indices: 107093761--107093799 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
107093751 TTTTAAAATT
107093761 AATAA AATAA AATAA AATAA AATAA AATAA GAA-AA AATA
1 AATAA AATAA AATAA AATAA AATAA AATAA -AATAA AATA
107093800 TAAAACTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 2 0.06
5 28 0.88
6 2 0.06
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:107093836 original size:19 final size:18
Alignment explanation
Indices: 107093764--107093863 Score: 60
Period size: 19 Copynumber: 5.2 Consensus size: 18
107093754 TAAAATTAAT
*
107093764 AAAA-TAAAATAAAATAAA
1 AAAATTAAAA-AAAAGAAA
* * *
107093782 ATAAAATAAGAAAAAATATA
1 A-AAATTAA-AAAAAAGAAA
*
107093802 AAACTTAAAAAAAAAGAAA
1 AAAATT-AAAAAAAAGAAA
107093821 AAAATTAAAGAAAAAGACAA
1 AAAATTAAA-AAAAAGA-AA
*
107093841 AAGA-TATAAAAAAAGTAAA
1 AAAATTA-AAAAAAAG-AAA
107093860 AAAA
1 AAAA
107093864 ATTAGAAGCA
Statistics
Matches: 66, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
18 4 0.06
19 39 0.59
20 21 0.32
21 2 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAATTAAAAAAAAGAAA
Found at i:107097645 original size:20 final size:20
Alignment explanation
Indices: 107097620--107097662 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
107097610 TATTAGAATA
107097620 AGGGAATTATTTTCCCAGTT
1 AGGGAATTATTTTCCCAGTT
107097640 AGGGAATTATTTTCCCAGTT
1 AGGGAATTATTTTCCCAGTT
107097660 AGG
1 AGG
107097663 TTATGACTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (20 bp):
AGGGAATTATTTTCCCAGTT
Found at i:107098936 original size:15 final size:15
Alignment explanation
Indices: 107098912--107098946 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
107098902 TTTCAGTGTT
107098912 AAAC-CTTGTAAAAC
1 AAACACTTGTAAAAC
107098926 AAACACTTGTAAAAC
1 AAACACTTGTAAAAC
107098941 AAACAC
1 AAACAC
107098947 GTGGATTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.54, C:0.23, G:0.06, T:0.17
Consensus pattern (15 bp):
AAACACTTGTAAAAC
Found at i:107099249 original size:32 final size:32
Alignment explanation
Indices: 107099213--107099276 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
107099203 AGAATGATTA
107099213 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
1 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
107099245 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
1 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
107099277 TTGATGACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (32 bp):
GCAATGCTAAAGAATCTGTGGAATTTACTTTC
Found at i:107115055 original size:29 final size:29
Alignment explanation
Indices: 107115013--107115072 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
107115003 TCCAACATAT
107115013 ATAAGCCATCATGCAAGTTACCATTGCCA
1 ATAAGCCATCATGCAAGTTACCATTGCCA
107115042 ATAAGCCATCATGCAAGTTACCATTGCCA
1 ATAAGCCATCATGCAAGTTACCATTGCCA
107115071 AT
1 AT
107115073 CTTCCTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (29 bp):
ATAAGCCATCATGCAAGTTACCATTGCCA
Found at i:107116053 original size:29 final size:29
Alignment explanation
Indices: 107116020--107116079 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
107116010 CTTGAGAAGA
107116020 CTGGATTGCTAAAGCATTCTTCGGAGCAT
1 CTGGATTGCTAAAGCATTCTTCGGAGCAT
107116049 CTGGATTGCTAAAGCATTCTTCGGAGCAT
1 CTGGATTGCTAAAGCATTCTTCGGAGCAT
107116078 CT
1 CT
107116080 AACACGTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (29 bp):
CTGGATTGCTAAAGCATTCTTCGGAGCAT
Found at i:107127656 original size:46 final size:46
Alignment explanation
Indices: 107127522--107127732 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 46
107127512 TGCCGCTGCT
*
107127522 ATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATA-CCGATGC
* * **
107127567 ATGTCCCAGACAT-GTCTTACACTAGC-TTACGTCTCGAGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCACT-CATCTC-ATACCGATGC
* *
107127613 ATATCTCAGACAT-GTCTTACACTAGCACTCATCTCAATACCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-ATACCGATG-C
* * * * **
107127660 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCACTCAT-CTCAT-ACCGATGC
*
107127707 ATGTCCCAGACAT-GTCTTAAACTAGC
1 ATGTCCCAGACATGGTCTTACACTAGC
107127733 TCACAATAAC
Statistics
Matches: 135, Mismatches: 22, Indels: 17
0.78 0.13 0.10
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 59 0.44
47 29 0.21
48 22 0.16
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (46 bp):
ATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATACCGATGC
Found at i:107127705 original size:94 final size:94
Alignment explanation
Indices: 107127469--107127737 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 94
107127459 AGACATCGAC
* * * *
107127469 GCCATGTCCCAGACATGGTCTTACACAAGTTCT-AGTATATCTGTGCCGCTGCTATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TA-ATGTG-GCCGATGC-ATGTCCCAGAC
107127533 ATGGTCTTACACT-G-ACACATCTCATAGCCGAT
62 AT-GTCTTACACTAGCACACATCTCATAGCCGAT
* * * * *
107127565 G-CATGTCCCAGACAT-GTCTTACACTAGCT-TACGT-CTCGAGGCCGATGCATATCTCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGACAT
*
107127626 GTCTTACACTAGCACTCATCTCAATA-CCGAT
64 GTCTTACACTAGCACACATCTC-ATAGCCGAT
* *
107127657 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGACATGT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGT
* *
107127722 CTTAAACTAGCTCACA
66 CTTACACTAGCACACA
107127738 ATAACCTACA
Statistics
Matches: 143, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
90 10 0.07
91 12 0.08
92 22 0.15
93 19 0.13
94 63 0.44
95 16 0.11
96 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCACACATCTCATAGCCGAT
Found at i:107135835 original size:39 final size:39
Alignment explanation
Indices: 107135772--107135890 Score: 184
Period size: 39 Copynumber: 3.0 Consensus size: 39
107135762 TAGTTCATTT
* * *
107135772 ACATGGTAATCACATTCACTTTTAAGCATATATCACATTAC
1 ACAT-GTAATCACA-TAACATTTAAGCATATATCACAATAC
107135813 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
1 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
*
107135852 ACATATAATCACATAACATTTAAGCATATATCACAATAC
1 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
107135891 TCAAAAACAT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
39 61 0.82
40 9 0.12
41 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (39 bp):
ACATGTAATCACATAACATTTAAGCATATATCACAATAC
Found at i:107135845 original size:22 final size:22
Alignment explanation
Indices: 107135820--107135886 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
107135810 TACACATGTA
107135820 ATCACATAACATTTAAGCATAT
1 ATCACATAACATTTAAGCATAT
107135842 ATCAC---A-A--TACA-CATAT
1 ATCACATAACATTTA-AGCATAT
107135858 AATCACATAACATTTAAGCATAT
1 -ATCACATAACATTTAAGCATAT
107135881 ATCACA
1 ATCACA
107135887 ATACTCAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 18
0.67 0.00 0.33
Matches are distributed among these distances:
16 7 0.19
17 6 0.17
18 1 0.03
19 1 0.03
20 1 0.03
21 1 0.03
22 12 0.33
23 7 0.19
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (22 bp):
ATCACATAACATTTAAGCATAT
Found at i:107138087 original size:16 final size:16
Alignment explanation
Indices: 107138063--107138093 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107138053 AATTAAGATA
*
107138063 TTTTTTTTCTTTTTCC
1 TTTTCTTTCTTTTTCC
107138079 TTTTCTTTCTTTTTC
1 TTTTCTTTCTTTTTC
107138094 TCATTCTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTCTTTCTTTTTCC
Found at i:107141202 original size:24 final size:25
Alignment explanation
Indices: 107141170--107141222 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
107141160 AAAAAGAAAG
107141170 AGAAAAATTAAAAGGAAATGAG-AA
1 AGAAAAATTAAAAGGAAATGAGTAA
* * *
107141194 AGAAAAATTGAAGGGGAATGAGTAA
1 AGAAAAATTAAAAGGAAATGAGTAA
107141219 AGAA
1 AGAA
107141223 GTTCTTCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.13
Consensus pattern (25 bp):
AGAAAAATTAAAAGGAAATGAGTAA
Found at i:107143488 original size:32 final size:33
Alignment explanation
Indices: 107143442--107143521 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 33
107143432 GCACTAAATT
* * *
107143442 GGTTGGTGTATATATAATATAA-ATATGTGTGCAT
1 GGTTTGTGT-TATAT-ATATAATATATATGTGCAA
107143476 GGTTT-TGTTATATATATAATATATATGTGCAA
1 GGTTTGTGTTATATATATAATATATATGTGCAA
*
107143508 GTTTTGTGTTATAT
1 GGTTTGTGTTATAT
107143522 GTAATATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
31 6 0.15
32 19 0.47
33 11 0.28
34 4 0.10
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (33 bp):
GGTTTGTGTTATATATATAATATATATGTGCAA
Found at i:107143512 original size:31 final size:33
Alignment explanation
Indices: 107143452--107143566 Score: 98
Period size: 32 Copynumber: 3.6 Consensus size: 33
107143442 GGTTGGTGTA
* *
107143452 TATATAATATAA-ATATGTGTGCATGGTTTTGT-
1 TATAT-ATATAATATATATGTGCATAGTTTTGTG
107143484 TATATATATAATATATATGTGCA-AGTTTTGTG
1 TATATATATAATATATATGTGCATAGTTTTGTG
* * * *
107143516 T-TATATGTAATATATATAG-GCGTGGCTTTGT-
1 TATATATATAATATATAT-GTGCATAGTTTTGTG
* *
107143547 TATATAGATAATAAATATGT
1 TATATATATAATATATATGT
107143567 ATGTTGGTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
31 32 0.47
32 36 0.53
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.45
Consensus pattern (33 bp):
TATATATATAATATATATGTGCATAGTTTTGTG
Found at i:107143656 original size:5 final size:5
Alignment explanation
Indices: 107143646--107143670 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
107143636 TTATTATACA
107143646 TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT
107143671 GTGTGGGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:107143686 original size:18 final size:19
Alignment explanation
Indices: 107143663--107143710 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
107143653 TATTATATTA
*
107143663 TATTATATGTG-TGGGTCT
1 TATTATATATGATGGGTCT
*
107143681 TATTATATATGCATTGGTCT
1 TATTATATATG-ATGGGTCT
107143701 TATTATATAT
1 TATTATATAT
107143711 ATTATATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
20 16 0.62
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (19 bp):
TATTATATATGATGGGTCT
Found at i:107144148 original size:36 final size:35
Alignment explanation
Indices: 107144073--107144150 Score: 84
Period size: 36 Copynumber: 2.2 Consensus size: 35
107144063 GTGAACCATG
* * * * *
107144073 TTAACTTGGTGATTATATTATTACGGCGAACTGTG
1 TTAATTTGGTGATTATATTAATACGACGAAATGTA
* *
107144108 TTAATTTGGTGATCTGTATTAATATGACGAAATGTA
1 TTAATTTGGTGAT-TATATTAATACGACGAAATGTA
107144144 TTAATTT
1 TTAATTT
107144151 CCCAAACTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
35 12 0.34
36 23 0.66
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (35 bp):
TTAATTTGGTGATTATATTAATACGACGAAATGTA
Found at i:107146167 original size:97 final size:99
Alignment explanation
Indices: 107145993--107146200 Score: 339
Period size: 97 Copynumber: 2.1 Consensus size: 99
107145983 ATGCGTCCAT
* *
107145993 GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCATGAAACTATAATCATATTTT
1 GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCACGAAACAATAATCATATTTT
*
107146058 ATTGATATCATAAT-ATTTGCACTGGTTTATGAA
66 ATTGATATCATAATAATTTGCACTGCTTTATGAA
*
107146091 GCATTTGCATCATTCAAGAGCATATGCATGTGGTTA-TTTAGTCACGAAACAATAATCATATTTT
1 GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCACGAAACAATAATCATATTTT
*
107146155 ATTGGTATCATAATAACATTTGCACTGCTTTATGAA
66 ATTGATATCATAAT-A-ATTTGCACTGCTTTATGAA
107146191 GCATTTGCAT
1 GCATTTGCAT
107146201 TATCTTGGAT
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
97 39 0.38
98 35 0.34
100 28 0.27
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (99 bp):
GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCACGAAACAATAATCATATTTT
ATTGATATCATAATAATTTGCACTGCTTTATGAA
Found at i:107146574 original size:90 final size:90
Alignment explanation
Indices: 107146468--107146687 Score: 257
Period size: 90 Copynumber: 2.4 Consensus size: 90
107146458 TCTGAAATCC
*
107146468 TGGTTTCGCCTAGTAAGTCCTTTCAAATTTTGGTTCCACCCAAGTTTGTT-CAGAGA-TTTATAG
1 TGGTTTCGCCTAGTAAGTCCTTTCAAATTTTGGTTCCACCCAAGTTTGTTCCA-A-ACGTTATAG
*
107146531 TTTCGCCCAAGTCCATTATTGAAGTTA
64 TTTCGCCCAAGTCCATTATCGAAGTTA
** ** * *
107146558 TGGTTTCATCTAGTAAGTCCTTTCAAATTCTT-GTTCGGCCCAGGTTTGTTCCAAACGTTCTAGT
1 TGGTTTCGCCTAGTAAGTCCTTTCAAATT-TTGGTTCCACCCAAGTTTGTTCCAAACGTTATAGT
* * *
107146622 TTTGCCCAAGTCCATTGTCGAAGTTC
65 TTCGCCCAAGTCCATTATCGAAGTTA
* * * *
107146648 TAGTTTTGCCCAGTAAGTCCTTTCAAATTTTGGTTTCACC
1 TGGTTTCGCCTAGTAAGTCCTTTCAAATTTTGGTTCCACC
107146688 TAGATTCTTT
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
89 3 0.03
90 100 0.93
91 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.40
Consensus pattern (90 bp):
TGGTTTCGCCTAGTAAGTCCTTTCAAATTTTGGTTCCACCCAAGTTTGTTCCAAACGTTATAGTT
TCGCCCAAGTCCATTATCGAAGTTA
Found at i:107146847 original size:30 final size:30
Alignment explanation
Indices: 107146811--107146899 Score: 124
Period size: 30 Copynumber: 3.0 Consensus size: 30
107146801 TTTTACTCAC
*
107146811 TCTATTGTCGAAGTTCTGGTTTCACCCAGG
1 TCTATTGTCGAAGTTATGGTTTCACCCAGG
**
107146841 TCTATTGTCGAAGTTATGGTTTTGCCCAGG
1 TCTATTGTCGAAGTTATGGTTTCACCCAGG
* * *
107146871 TCCATTGTTGAAGTTTTGGTTTCACCCAG
1 TCTATTGTCGAAGTTATGGTTTCACCCAG
107146900 TAAGTCCTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (30 bp):
TCTATTGTCGAAGTTATGGTTTCACCCAGG
Found at i:107147297 original size:79 final size:78
Alignment explanation
Indices: 107147124--107147732 Score: 418
Period size: 75 Copynumber: 8.0 Consensus size: 78
107147114 TTTCAAACTT
* * * * * * *
107147124 GAGATTTTCATGGAGG--CTTTTAG--TTTTTCATTTTA-T-CAAGTGAAATCTATTTCCAAAAA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAA
107147183 TGGGTTGAGCCTC
66 TGGGTTGAGCCTC
* * ***
107147196 GAG-TTTTCATCAAGGTCCTTTTAGTTTTCTTTCATTTTATTAAAAGTTGGATCCATTTTCGAAA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTT-TTTCATTTTATTAAAAGTCAAATCCATTTTCGAAA
* * *
107147260 ATGGATCGAGCCTT
65 ATGGGTTGAGCCTC
* * * ** * *
107147274 GAGATTGTCATCGAGGTCATTTTAG---TTTTCATTTTATCAAAAGTCACA-CTTGTTTTCTAAT
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTTCATTTTATTAAAAGTCAAATC-CATTTTCGAAA
107147335 ATGGGTTGAGCCTC
65 ATGGGTTGAGCCTC
* * * * *
107147349 GGGATTGTTATTGAGGTCCTTTCAGTTTTTTTCATTTTATT-AAAGTCAAATTCATTTTCGAAAA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAA
* * *
107147413 CGGGTCGAACCTC
66 TGGGTTGAGCCTC
* *
107147426 GAAATTGTCATCAAGGTCCTTTTAAG-TTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAA
1 GAGATTGTCATCGAGGTCCTTTT-AGTTTTTTTCA-TTTTATTAAAAGTCAAATCCATTTTCGAA
*
107147490 AATGGATTGAGCCTC
64 AATGGGTTGAGCCTC
* * * * * * * * * *
107147505 GAGATTGTCGTCGAGTTTCTTTTAG----TTTAATTTTGTCAAAATTTGAACAT--GTTTTCAAA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTTCATTTTATTAAAA-GTCAA-ATCCATTTTC-GA
*
107147564 AAATGGGTTGAACCTC
63 AAATGGGTTGAGCCTC
* * * * *
107147580 GGGGTTG-CTATTGAGGTCCTTTTAGTTTTTTTTTTCATTTTATTAAAAGTCGAATTCATTTTCG
1 GAGATTGTC-ATCGAGGTCCTTTTAG---TTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCG
* *
107147644 AAAATGGGTCGAACCTC
62 AAAATGGGTTGAGCCTC
* * * * * * * * *
107147661 GAGATTTTCGTCGAGATCCTTTTAG---TTTTAAATTTATCAAAAGTCGAATCTATTTTCAAAAA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAA
107147723 TGGGTTGAGC
66 TGGGTTGAGC
107147733 TTTAGGTTTG
Statistics
Matches: 412, Mismatches: 95, Indels: 57
0.73 0.17 0.10
Matches are distributed among these distances:
71 10 0.02
72 3 0.01
73 7 0.02
74 16 0.04
75 136 0.33
76 13 0.03
77 52 0.13
78 52 0.13
79 67 0.16
80 2 0.00
81 35 0.08
82 19 0.05
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (78 bp):
GAGATTGTCATCGAGGTCCTTTTAGTTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAA
TGGGTTGAGCCTC
Found at i:107147433 original size:152 final size:156
Alignment explanation
Indices: 107147182--107147475 Score: 375
Period size: 152 Copynumber: 1.9 Consensus size: 156
107147172 ATTTCCAAAA
* ***
107147182 ATGGGTTGAGCCTCGAGTTTTCATCAAGGTCCTTTTAGTTTTCTTTCATTTTATTAAAAGTTGGA
1 ATGGGTTGAGCCTCGAGTTTTCATCAAGGTCCTTTCAGTTTTCTTTCATTTTATTAAAAGTCAAA
* * * * *
107147247 TCCATTTTCGAAAATGGATCGAGCCTTGAGATTGTCATCGAGGTCATTTT-AG-TTTTCA-TTTT
66 TCCATTTTCGAAAACGGATCGAACCTCGAAATTGTCATCAAGGTCATTTTAAGTTTTTCATTTTT
107147309 ATCAAAAGTCACACTTGTTTTCTAAT
131 ATCAAAAGTCACACTTGTTTTCTAAT
* **
107147335 ATGGGTTGAGCCTCGGGATTGTT-ATTGAGGTCCTTTCAGTTTT-TTTCATTTTATT-AAAGTCA
1 ATGGGTTGAGCCTCGAG-TT-TTCATCAAGGTCCTTTCAGTTTTCTTTCATTTTATTAAAAGTCA
* * *
107147397 AATTCATTTTCGAAAACGGGTCGAACCTCGAAATTGTCATCAAGGTCCTTTTAAGTTTTTTCATT
64 AATCCATTTTCGAAAACGGATCGAACCTCGAAATTGTCATCAAGGTCATTTTAAG-TTTTTCATT
*
107147462 TTTATTAAAAGTCA
128 TTTATCAAAAGTCA
107147476 AATCCATTTT
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
152 48 0.40
153 30 0.25
154 19 0.16
155 8 0.07
156 14 0.12
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (156 bp):
ATGGGTTGAGCCTCGAGTTTTCATCAAGGTCCTTTCAGTTTTCTTTCATTTTATTAAAAGTCAAA
TCCATTTTCGAAAACGGATCGAACCTCGAAATTGTCATCAAGGTCATTTTAAGTTTTTCATTTTT
ATCAAAAGTCACACTTGTTTTCTAAT
Found at i:107147609 original size:231 final size:231
Alignment explanation
Indices: 107147202--107147732 Score: 653
Period size: 231 Copynumber: 2.3 Consensus size: 231
107147192 CCTCGAGTTT
* * *
107147202 TCATCAAGGTCCTTTTAGTTTTCTTTCATTTTATTAAAAGTTGGATCCATTTTCGAAAATGGATC
1 TCATCAAGGTCCTTTTAG-TTT-TTTCATTTTATTAAAAGTCGAATCCATTTTCGAAAATGGATT
* * * *
107147267 GAGCCTTGAGATTGTCATCGAGGTCATTTTAGTTTTCATTTTATCAAAAGTCACACTTGTTTTCT
64 GAGCCTCGAGATTGTCATCGAGGTCATTTTAGTTTTAATTTTATCAAAAGTCACACATGTTTTCA
* * *
107147332 AATATGGGTTGAGCCTCGGGATTGTTATTGAGGTCCTTTCAG-TTTTTTTCATTTTATT-AAAGT
129 AAAATGGGTTGAACCTCGGGATTGCTATTGAGGTCCTTTCAGTTTTTTTTCATTTTATTAAAAGT
107147395 CAAATTCATTTTCGAAAACGGGTCGAACCTCGAAATTG
194 CAAATTCATTTTCGAAAACGGGTCGAACCTCGAAATTG
*
107147433 TCATCAAGGTCCTTTTAAGTTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAAAATGGATT
1 TCATCAAGGTCCTTTT-AGTTTTTTCA-TTTTATTAAAAGTCGAATCCATTTTCGAAAATGGATT
* * * * *
107147498 GAGCCTCGAGATTGTCGTCGAGTTTC-TTTTAG-TTTAATTTTGTCAAAATTTGA-ACATGTTTT
64 GAGCCTCGAGATTGTCATCGAG-GTCATTTTAGTTTTAATTTTATCAAAA-GTCACACATGTTTT
* *
107147560 CAAAAAATGGGTTGAACCTCGGGGTTGCTATTGAGGTCCTTTTAGTTTTTTTTTTCATTTTATTA
127 C-AAAAATGGGTTGAACCTCGGGATTGCTATTGAGGTCCTTTCAG--TTTTTTTTCATTTTATTA
* * * *
107147625 AAAGTCGAATTCATTTTCGAAAATGGGTCGAACCTCGAGATTT
189 AAAGTCAAATTCATTTTCGAAAACGGGTCGAACCTCGAAATTG
* * * * * * * * *
107147668 TCGTCGAGATCCTTTTAG--TTTTAAATTTATCAAAAGTCGAATCTATTTTCAAAAATGGGTTGA
1 TCATCAAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCGAATCCATTTTCGAAAATGGATTGA
107147731 GC
66 GC
107147733 TTTAGGTTTG
Statistics
Matches: 259, Mismatches: 32, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
230 28 0.11
231 152 0.59
232 9 0.03
234 18 0.07
235 52 0.20
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.42
Consensus pattern (231 bp):
TCATCAAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCGAATCCATTTTCGAAAATGGATTGA
GCCTCGAGATTGTCATCGAGGTCATTTTAGTTTTAATTTTATCAAAAGTCACACATGTTTTCAAA
AATGGGTTGAACCTCGGGATTGCTATTGAGGTCCTTTCAGTTTTTTTTCATTTTATTAAAAGTCA
AATTCATTTTCGAAAACGGGTCGAACCTCGAAATTG
Found at i:107147726 original size:75 final size:76
Alignment explanation
Indices: 107147124--107147882 Score: 416
Period size: 75 Copynumber: 10.0 Consensus size: 76
107147114 TTTCAAACTT
* * *
107147124 GAGATTTTCATGGAGG--CTTTTAGTTTTTCATTTTATC--AAGT-GAAATCTATTTCCAAAAAT
1 GAGATTTTCATCGAGGTCCTTTTAGTTTTTCATTTTATCAAAAGTCG-AATCTATTTTCGAAAAT
107147184 GGGTTGAGCCTC
65 GGGTTGAGCCTC
* * * * *
107147196 GAG-TTTTCATCAAGGTCCTTTTAGTTTTCTTTCATTTTATTAAAAGTTGGATCCATTTTCGAAA
1 GAGATTTTCATCGAGGTCCTTTTAG--TT-TTTCATTTTATCAAAAGTCGAATCTATTTTCGAAA
* * *
107147260 ATGGATCGAGCCTT
63 ATGGGTTGAGCCTC
* * * * *
107147274 GAGATTGTCATCGAGGTCATTTTAG-TTTTCATTTTATCAAAAGTC-ACA-CTTGTTTTCTAATA
1 GAGATTTTCATCGAGGTCCTTTTAGTTTTTCATTTTATCAAAAGTCGA-ATC-TATTTTCGAAAA
107147336 TGGGTTGAGCCTC
64 TGGGTTGAGCCTC
* * * * *
107147349 GGGATTGTT-ATTGAGGTCCTTTCAGTTTTTTTCATTTTAT-TAAAGTCAAAT-TCATTTTCGAA
1 GAGATT-TTCATCGAGGTCCTTTTAG--TTTTTCATTTTATCAAAAGTCGAATCT-ATTTTCGAA
* * *
107147411 AACGGGTCGAACCTC
62 AATGGGTTGAGCCTC
* * * * * *
107147426 GAAATTGTCATCAAGGTCCTTTTAAGTTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAAA
1 GAGATTTTCATCGAGGTCCTTTT-AG-TTTTTCA-TTTTATCAAAAGTCGAATCTATTTTCGAAA
*
107147491 ATGGATTGAGCCTC
63 ATGGGTTGAGCCTC
* * * * * * * * * *
107147505 GAGATTGTCGTCGAGTTTCTTTTAG--TTTAATTTTGTCAAAATTTGAA-CATGTTTTCAAAAAA
1 GAGATTTTCATCGAGGTCCTTTTAGTTTTTCATTTTATCAAAAGTCGAATC-TATTTTC-GAAAA
*
107147567 TGGGTTGAACCTC
64 TGGGTTGAGCCTC
** * * *
107147580 G-GGGTTGCTATTGAGGTCCTTTTAGTTTTTTTTTTCATTTTATTAAAAGTCGAAT-TCATTTTC
1 GAGATTTTC-ATCGAGGTCCTTTTAG-----TTTTTCATTTTATCAAAAGTCGAATCT-ATTTTC
* *
107147643 GAAAATGGGTCGAACCTC
59 GAAAATGGGTTGAGCCTC
* * * * *
107147661 GAGATTTTCGTCGAGATCCTTTTAG-TTTTAAATTTATCAAAAGTCGAATCTATTTTCAAAAATG
1 GAGATTTTCATCGAGGTCCTTTTAGTTTTTCATTTTATCAAAAGTCGAATCTATTTTCGAAAATG
*
107147725 GGTTGAG-CTT
66 GGTTGAGCCTC
* * * * * * * * * * * * *
107147735 TAGGTTTGCCGTTGAGGTCCTTTCAATTTTTCATTTTGTTAAAAGTCAAATTTGTTTTC-AGAAT
1 GAGATTT-TCATCGAGGTCCTTTTAGTTTTTCATTTTATCAAAAGTCGAATCTATTTTCGAAAAT
** *
107147799 GGGTCAAGCCTT
65 GGGTTGAGCCTC
* * * * * * *
107147811 GAGATTATCAT-TA--T--TTTAAGTTATTCATTTTATCAAAAATCAAATCTATTTTCAAGAAAT
1 GAGATTTTCATCGAGGTCCTTTTAGTTTTTCATTTTATCAAAAGTCGAATCTATTTTCGA-AAAT
*
107147871 AGGTTGAGCCTC
65 GGGTTGAGCCTC
107147883 AATATTAACA
Statistics
Matches: 517, Mismatches: 128, Indels: 84
0.71 0.18 0.12
Matches are distributed among these distances:
70 31 0.06
71 11 0.02
72 15 0.03
73 8 0.02
74 29 0.06
75 151 0.29
76 48 0.09
77 48 0.09
78 52 0.10
79 67 0.13
81 31 0.06
82 26 0.05
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (76 bp):
GAGATTTTCATCGAGGTCCTTTTAGTTTTTCATTTTATCAAAAGTCGAATCTATTTTCGAAAATG
GGTTGAGCCTC
Found at i:107147750 original size:156 final size:157
Alignment explanation
Indices: 107147452--107147757 Score: 393
Period size: 156 Copynumber: 2.0 Consensus size: 157
107147442 TCCTTTTAAG
* *
107147452 TTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAAAATGGATTGAGCCTCGAGATTGTCGTC
1 TTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAAAATGGATCGAACCTCGAGATTGTCGTC
* * * * * * * *
107147517 GAGTTTCTTTTAGTTTAATTTTGTCAAAATTTGAACATGTTTTCAAAAAATGGGTTGAACCTCGG
66 GAGATCCTTTTAGTTTAAATTTATCAAAAGTCGAACATATTTTCAAAAAATGGGTTGAACCTCAG
*
107147582 GGTTGCTATTGAGGTCCTTTTAGTTTT
131 GGTTGCCATTGAGGTCCTTTTAGTTTT
* * * *
107147609 TTTTTTCA-TTTTATTAAAAGTCGAATTCATTTTCGAAAATGGGTCGAACCTCGAGATTTTCGTC
1 TTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAAAATGGATCGAACCTCGAGATTGTCGTC
* * *
107147673 GAGATCCTTTTAGTTTTAAATTTATCAAAAGTCGAATC-TATTTTC-AAAAATGGGTTGAGCTTT
66 GAGATCCTTTTAG-TTTAAATTTATCAAAAGTCGAA-CATATTTTCAAAAAATGGGTTGAACCTC
* *
107147736 AGGTTTGCCGTTGAGGTCCTTT
129 AGGGTTGCCATTGAGGTCCTTT
107147758 CAATTTTTCA
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
156 94 0.74
157 32 0.25
158 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.42
Consensus pattern (157 bp):
TTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAAAATGGATCGAACCTCGAGATTGTCGTC
GAGATCCTTTTAGTTTAAATTTATCAAAAGTCGAACATATTTTCAAAAAATGGGTTGAACCTCAG
GGTTGCCATTGAGGTCCTTTTAGTTTT
Found at i:107147802 original size:231 final size:228
Alignment explanation
Indices: 107147246--107147802 Score: 573
Period size: 231 Copynumber: 2.4 Consensus size: 228
107147236 TAAAAGTTGG
* * * * * * * *
107147246 ATCCATTTTCGAAAATGGATCGAGCCTTGAGATTGTCATCGAGGTCATTTTAGTTTTCATTTTAT
1 ATCCATTTTCAAAAATGGATTGAGCCTAGAGATTGCCGTCGAGGTC-CTTTAATTTTCATTTTGT
* * * *
107147311 CAAAAGTCACACTTGTTTTCTAATATGGGTTGAGCCTCGGGATTGTTATTGAGGTCCTTTCAGTT
65 CAAAAGTCAAACTTGTTTTC-AAAATGGGTTGAACCTCGGGATTGCTATTGAGGTCCTTTCAGTT
107147376 TTTTTCATTTTATTAAAGTCAAATTCATTTTCGAAAACGGGTCGAACCTCGAAATTGTCATCAAG
129 TTTTTCATTTTATTAAAGTCAAATTCATTTTCGAAAACGGGTCGAACCTCGAAATTGTCATCAAG
* ** *
107147441 GTCCTTTTAAGTTTTTTCATTTTTATTAAAAGTCAA
194 ATCCTTTTAAG-TTTTTCAAATTTATCAAAAGTCAA
* * * * * * * *
107147477 ATCCATTTTCGAAAATGGATTGAGCCTCGAGATTGTCGTCGAGTTTCTTTTAGTTTAATTTTGTC
1 ATCCATTTTCAAAAATGGATTGAGCCTAGAGATTGCCGTCGAGGTCCTTTAATTTTCATTTTGTC
* ** * * *
107147542 AAAATTTGAACATGTTTTCAAAAAATGGGTTGAACCTCGGGGTTGCTATTGAGGTCCTTTTAGTT
66 AAAAGTCAAACTTGTTTTC--AAAATGGGTTGAACCTCGGGATTGCTATTGAGGTCCTTTCAG--
* * * * *
107147607 TTTTTTTTCATTTTATTAAAAGTCGAATTCATTTTCGAAAATGGGTCGAACCTCGAGATTTTCGT
127 -TTTTTTTCATTTTATT-AAAGTCAAATTCATTTTCGAAAACGGGTCGAACCTCGAAATTGTCAT
* *
107147672 CGAGATCCTTTT-AG-TTTT-AAATTTATCAAAAGTCGA
190 CAAGATCCTTTTAAGTTTTTCAAATTTATCAAAAGTCAA
* * * * *
107147708 ATCTATTTTCAAAAATGGGTTGAGCTTTAG-GTTTGCCGTTGAGGTCCTTTCAATTTTTCATTTT
1 ATCCATTTTCAAAAATGGATTGAGC-CTAGAGATTGCCGTCGAGGTCCTTT-AA-TTTTCATTTT
* * *
107147772 GTTAAAAGTCAAATTTGTTTTCAGAATGGGT
63 GTCAAAAGTCAAACTTGTTTTCAAAATGGGT
107147803 CAAGCCTTGA
Statistics
Matches: 265, Mismatches: 53, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
230 27 0.10
231 137 0.52
232 7 0.03
233 24 0.09
234 18 0.07
235 52 0.20
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (228 bp):
ATCCATTTTCAAAAATGGATTGAGCCTAGAGATTGCCGTCGAGGTCCTTTAATTTTCATTTTGTC
AAAAGTCAAACTTGTTTTCAAAATGGGTTGAACCTCGGGATTGCTATTGAGGTCCTTTCAGTTTT
TTTCATTTTATTAAAGTCAAATTCATTTTCGAAAACGGGTCGAACCTCGAAATTGTCATCAAGAT
CCTTTTAAGTTTTTCAAATTTATCAAAAGTCAA
Found at i:107148228 original size:2 final size:2
Alignment explanation
Indices: 107148223--107148270 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
107148213 CTAAACTTAC
107148223 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107148265 AT AT AT
1 AT AT AT
107148271 TGTCGAAACC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107149125 original size:23 final size:24
Alignment explanation
Indices: 107149098--107149150 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
107149088 ATAAATAGTA
107149098 ATAGTGTTAGAA-ATATACTATAT-
1 ATAGTGTTAGAAGATATAC-ATATG
*
107149121 ATAGTGTTTGAAGTATATACATATG
1 ATAGTGTTAGAAG-ATATACATATG
107149146 ATAGT
1 ATAGT
107149151 AAAAATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 11 0.42
24 4 0.15
25 11 0.42
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.40
Consensus pattern (24 bp):
ATAGTGTTAGAAGATATACATATG
Found at i:107149189 original size:2 final size:2
Alignment explanation
Indices: 107149177--107149214 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
107149167 TAATGTTAAA
*
107149177 AT AT AT A- AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107149215 AAATAAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:107149379 original size:22 final size:22
Alignment explanation
Indices: 107149353--107149395 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
107149343 ATAATACTAT
107149353 GTATAA-AAATATATATATACTC
1 GTATAATAAA-ATATATATACTC
*
107149375 GTATAATAAAATGTATATACT
1 GTATAATAAAATATATATACT
107149396 AATATTAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (22 bp):
GTATAATAAAATATATATACTC
Found at i:107149519 original size:3 final size:3
Alignment explanation
Indices: 107149511--107150251 Score: 268
Period size: 3 Copynumber: 242.7 Consensus size: 3
107149501 TAAAAGTACC
107149511 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
107149559 TAA TAA TAA TAA TCAA -AA TACA AAA GAA -AG TAC GACG TAA TAA TGAGG
1 TAA TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA T-A-A
* * *
107149607 TAA GGAA -AA TAA -AA T-A TAA T-A TAT TAGA TATA TAA -ATA TAA TAG
1 TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TA-A TAA TAA
** *
107149651 TAA -ATA TAA TAA TGT TAA -AA -AA TACCA TACG TAA -AGA GT-A TATA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TA--A TA-A TAA TA-A -TAA TA-A
* * *
107149695 TAA -ACA TATA TAA TAA AAA T-A TACA CTAA TAT TTA TAAA TAA TAA
1 TAA TA-A TA-A TAA TAA TAA TAA TA-A -TAA TAA TAA T-AA TAA TAA
* *
107149740 TAG TAA T-G TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
107149787 TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA TAA CAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA TAA
* *
107149834 TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA -CA TAGA -AA TTCAA -AA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA -T-AA TAA
* *
107149880 -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A TACA CTAA
1 TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A -TAA
* * *
107149923 TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* * * *
107149969 TGA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA
* * * *
107150016 CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA -CA TAGA -AA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* *
107150061 TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
107150103 TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA
1 TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * *
107150151 TAA TAA TAA TAA TGA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA
* * * *
107150196 TAA TATG TACA TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA
1 TAA TA-A TA-A TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
107150244 TAA TAA TA
1 TAA TAA TA
107150252 TAGGAATTCA
Statistics
Matches: 554, Mismatches: 98, Indels: 172
0.67 0.12 0.21
Matches are distributed among these distances:
2 61 0.11
3 401 0.72
4 78 0.14
5 14 0.03
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:107149889 original size:188 final size:191
Alignment explanation
Indices: 107149700--107150300 Score: 894
Period size: 188 Copynumber: 3.1 Consensus size: 191
107149690 ATATATAAAC
107149700 ATATATAATAAAAATATACACTAATATTTATAAATAATAATAGTAATGTAATAATAATAATAATA
1 ATAT-TAAT-AAAATATACACTAATATTTATAAATAATAATAGT-A-G-AAT-ATAATAATAATA
*
107149765 ATAATAATAATAATAATAATAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACA
60 ATAATAATAATAATAATGATAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACA
*
107149830 ATAATAATAATAAGTAACAATAATAATAATAATAACATAGAAATTCAAAAAAGTAAACATAATAT
125 GTAATAATAATAAGTAACAATAATAATAATAATAACATAGAAATTCAAAAAAGTAAAC--AATAT
107149895 AATG
188 AATG
107149899 ATATTAAAATAAAATATACACTAATATTTATAAATAAT-A-A-TAG--TA-AAT-ATAATAATAA
1 ATATT--AATAAAATATACACTAATATTTATAAATAATAATAGTAGAATATAATAATAATAATAA
107149957 TAATAATAATAATGATAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAGTAA
64 TAATAATAATAATGATAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAGTAA
107150022 TAATAATAAGTAACAATAATAATAATAATAACATAGAAATTCAAAAAAGTAAACATAATATAATG
129 TAATAATAAGTAACAATAATAATAATAATAACATAGAAATTCAAAAAAGTAAAC--AATATAATG
107150087 ATATTAAAATAAAATATACACTAATATTTATAAATAATAATAGTA-AATATAATAATAATAATAA
1 ATATT--AATAAAATATACACTAATATTTATAAATAATAATAGTAGAATATAATAATAATAATAA
107150151 TAATAATAATAATGATAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAGTAA
64 TAATAATAATAATGATAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAGTAA
* * *
107150216 TAATAATAAGTAACAATAATAATAATAATAATAATATAGGAATTCAAAAAAACTAAACATAATAT
129 TAATAATAAGTAAC---AATAATAATAATAATAACATAGAAATTC-AAAAAAGTAAAC--AATAT
*
107150281 AATA
188 AATG
107150285 ATATTAAAATAAAATA
1 ATATT--AATAAAATA
107150301 ATTTAAAAAA
Statistics
Matches: 383, Mismatches: 6, Indels: 27
0.92 0.01 0.06
Matches are distributed among these distances:
188 176 0.46
189 4 0.01
190 2 0.01
191 3 0.01
192 2 0.01
193 3 0.01
194 90 0.23
195 1 0.00
196 1 0.00
197 27 0.07
198 39 0.10
199 32 0.08
200 3 0.01
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.32
Consensus pattern (191 bp):
ATATTAATAAAATATACACTAATATTTATAAATAATAATAGTAGAATATAATAATAATAATAATA
ATAATAATAATGATAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAGTAATA
ATAATAAGTAACAATAATAATAATAATAACATAGAAATTCAAAAAAGTAAACAATATAATG
Done.