Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 343 of 438
Found at i:107150309 original size:16 final size:16
Alignment explanation
Indices: 107150276--107150308 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
107150266 AACTAAACAT
*
107150276 AATATAATAATATTAA
1 AATAAAATAATATTAA
107150292 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
107150307 AA
1 AA
107150309 AATACTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:107153085 original size:40 final size:39
Alignment explanation
Indices: 107153040--107153247 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
107153030 CGGAATACAA
*
107153040 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
107153080 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
107153120 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
107153160 CCGGATTTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
107153200 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
107153240 CCGGATAT
1 CCGGATAT
107153248 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:107153180 original size:80 final size:81
Alignment explanation
Indices: 107153040--107153245 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 81
107153030 CGGAATACAA
* * * *
107153040 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
107153104 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* *
107153120 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCACAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
107153183 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
107153200 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
107153246 ATCATTTAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 105 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:107155158 original size:26 final size:26
Alignment explanation
Indices: 107155129--107155184 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
107155119 TGATACAAAT
107155129 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107155155 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107155181 TGAT
1 TGAT
107155185 TGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107162214 original size:51 final size:51
Alignment explanation
Indices: 107162159--107162264 Score: 196
Period size: 51 Copynumber: 2.1 Consensus size: 51
107162149 TGATACAAAT
107162159 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTCCA
107162210 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
107162261 TGAT
1 TGAT
107162265 GGAATTTCAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 15 0.28
51 39 0.72
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
Found at i:107162217 original size:25 final size:26
Alignment explanation
Indices: 107162159--107162264 Score: 198
Period size: 25 Copynumber: 4.2 Consensus size: 26
107162149 TGATACAAAT
107162159 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107162185 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
107162210 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107162236 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107162261 TGAT
1 TGAT
107162265 GGAATTTCAT
Statistics
Matches: 79, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
25 47 0.59
26 32 0.41
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107165416 original size:14 final size:15
Alignment explanation
Indices: 107165392--107165420 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
107165382 TTTTTTTTTT
107165392 GAAAGGCAGAAATTG
1 GAAAGGCAGAAATTG
107165407 GAAA-GCAGAAATTG
1 GAAAGGCAGAAATTG
107165421 AAAATACCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.07, G:0.31, T:0.14
Consensus pattern (15 bp):
GAAAGGCAGAAATTG
Found at i:107165923 original size:72 final size:71
Alignment explanation
Indices: 107165714--107166167 Score: 462
Period size: 72 Copynumber: 6.2 Consensus size: 71
107165704 ATAAATTAAG
* ** * * ** * *
107165714 AAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
107165779 TTTTTTTTGA
65 ---ATTTTGA
* * * *
107165789 AAGATAGAAATTGAAAATACCTCAGCATGTGGAC-TGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGT-GTCTTGAGGCTCAACTCA-TTCTCGCAATATGAG
*
107165853 TTGATTTTTGA
61 TTGAATTTTGA
* *
107165864 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTGCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
107165929 ATTTTGA
65 ATTTTGA
* * * * *
107165936 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
107166001 TTTTTTTTTTGAA
65 -----ATTTTG-A
* * * *
107166014 AAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
107166079 ATTTTGA
65 ATTTTGA
*
107166086 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
107166151 ATTTTG-
65 ATTTTGA
*
107166157 AAACATAAATT
1 AAACAGAAATT
107166168 AAGAAACAAA
Statistics
Matches: 327, Mismatches: 39, Indels: 30
0.83 0.10 0.08
Matches are distributed among these distances:
71 13 0.04
72 162 0.50
73 6 0.02
74 19 0.06
75 11 0.03
76 17 0.05
77 5 0.02
78 92 0.28
79 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (71 bp):
AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGAA
TTTTGA
Found at i:107166024 original size:150 final size:146
Alignment explanation
Indices: 107165412--107166700 Score: 1296
Period size: 150 Copynumber: 8.5 Consensus size: 146
107165402 AATTGGAAAG
* * * * * *
107165412 CAGAAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCGTAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATT
*
107165477 TTGAAAAACAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGC-A-ATGA
65 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
107165540 GTTGATTTTTTTGAAAGA
129 GTTGATTTTTTTGAAAAA
* * *
107165558 CAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA--A
* * * **
107165623 TTTTGAAAACAGAAATTGAAATTACCTCAACGCGTCTTGAGGCTCAACTCATTTCTCGCAATATG
63 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
107165688 AGTTGAATTTTGAAACATAAATT-AAGAAA
128 AGTTG-ATTTT------T---TTGAA-AAA
* ** * ** * *
107165717 CAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA---
* * * **
107165782 TTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGGACTGAGGCTCAACTCACCTCTCGCAA
62 ATTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAA
107165847 TATGAGTTGA--TTTTTG-AAAA
124 TATGAGTTGATTTTTTTGAAAAA
* * *
107165867 CATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTGCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGAATT
107165932 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
65 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
107165997 TCGATTTTTTTTTTGAAAAA
130 TTGA---TTTTTTTGAAAAA
* * *
107166017 TAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATT
* * **
107166082 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
65 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
107166147 TTGAATTTTGAAACATAAATT-AAGAAA
130 TTG-ATTTT------T---TTGAA-AAA
* ** * * * *
107166174 CAAAAATTGCCAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCCCGCATTATGAGTT-AATT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAA--
* * *
107166238 TTGTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCT
63 -----TTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCT
107166302 CGCAATATGAGTTGA--TTTTTG-AAAA
119 CGCAATATGAGTTGATTTTTTTGAAAAA
* * * *
107166327 CATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGTAATATGAGTTGAATT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGAATT
*
107166392 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAG
65 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
107166457 TCAATTTTTTTTTTTGAAAAA
130 ----TTGATTTTTTTGAAAAA
* *
107166478 CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATCTGAGTTGAATT
1 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATT
* * * **
107166543 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAATTCATTTCTCGCAATATGAG
65 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
107166608 TTGA--ATTTTG-AAAA
130 TTGATTTTTTTGAAAAA
* * * * *
107166622 TAGAAA-TAAAAATTACCTTAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAAT
1 CAGAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAAT
*
107166686 TTTGAAAATAGAAAT
64 TTTGAAAACAGAAAT
107166701 AAAAATATCA
Statistics
Matches: 964, Mismatches: 116, Indels: 128
0.80 0.10 0.11
Matches are distributed among these distances:
143 7 0.01
144 136 0.14
145 5 0.01
146 96 0.10
147 68 0.07
148 13 0.01
149 15 0.02
150 187 0.19
151 125 0.13
152 3 0.00
153 51 0.05
154 7 0.01
156 5 0.01
157 55 0.06
158 2 0.00
159 57 0.06
160 13 0.01
161 20 0.02
162 1 0.00
163 43 0.04
164 20 0.02
165 1 0.00
166 33 0.03
167 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (146 bp):
CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGAATTT
TGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAAA
Found at i:107166381 original size:72 final size:71
Alignment explanation
Indices: 107166243--107166700 Score: 499
Period size: 72 Copynumber: 6.2 Consensus size: 71
107166233 TAATTTTGTT
* * * * *
107166243 TTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAA
1 TTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTCTCGCAA
*
107166307 TATGAGTTGAT
61 TATGAGTTGAA
* * *
107166318 TTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGTAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATG
107166383 AGTTGAA
65 AGTTGAA
* * * * *
107166390 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATG
*
107166455 AG-TCAA
65 AGTTGAA
* *
107166461 TTTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTC
1 -------TTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTC
*
107166526 GCAATCTGAGTTGAA
57 GCAATATGAGTTGAA
* *
107166541 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAATTCATTTCTCGCAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATG
107166606 AGTTGAA
65 AGTTGAA
* * * *
107166613 TTTTGAAAATAGAAA-TAAAAATTACCTTAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATAT
1 TTTTGAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATAT
107166677 GAGTTGAA
64 GAGTTGAA
*
107166685 TTTTGAAAATAGAAAT
1 TTTTGAAAACAGAAAT
107166701 AAAAATATCA
Statistics
Matches: 332, Mismatches: 37, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
71 9 0.03
72 226 0.68
73 6 0.02
74 19 0.06
75 8 0.02
78 5 0.02
79 56 0.17
80 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Consensus pattern (71 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCTCGCAATATGA
GTTGAA
Found at i:107166407 original size:460 final size:456
Alignment explanation
Indices: 107165415--107166620 Score: 2053
Period size: 460 Copynumber: 2.6 Consensus size: 456
107165405 TGGAAAGCAG
* * * * * * *
107165415 AAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCA-TTCTCGTAATATGAGTTGAATTTTG
* *
107165480 AAAAACAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGC-A-ATGAGTT
65 -AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
* *
107165543 GA---TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCT
129 GATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCT
* * *
107165605 CGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAACGCGTCTTGAGGCTCAA
194 CGCAATCTGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAA
107165670 CTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCT
257 CTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCT
* *
107165735 CAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTGAAAGATAGAAAT
322 CAGCGTGCCCCGAGGCTCAACTCACCTCCCGCATTATGAGTTAATTTTTTTTGAAAGATAGAAAT
* *
107165800 TGAAAATACCTCAGCATGTGGACTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
387 TGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
107165865 AACAT
452 AACAT
*
107165870 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTGCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATT-CTCGTAATATGAGTTGAATTTTG
107165935 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCG
65 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCG
*
107166000 ATTTTTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
130 ATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
107166065 GCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
195 GCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
107166130 ATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAG
260 ATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAG
**
107166195 CGTGCCTTGAGGCTCAACTCACCTCCCGCATTATGAGTTAATTTTGTTTTTTGAAAGATAGAAAT
325 CGTGCCCCGAGGCTCAACTCACCTCCCGCATTATGAGTTAA--TT-TTTTTTGAAAGATAGAAAT
107166260 TGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
387 TGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
107166325 AACAT
452 AACAT
107166330 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGTAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATT-CTCGTAATATGAGTTGAATTTTG
* *
107166395 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTCA
65 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCG
*
107166460 ATTTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCT
130 A-TTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCT
*
107166525 CGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAATT
194 CGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
107166590 CATTTCTCGCAATATGAGTTGAATTTTGAAA
259 CATTTCTCGCAATATGAGTTGAATTTTGAAA
107166621 ATAGAAATAA
Statistics
Matches: 712, Mismatches: 29, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
454 54 0.08
455 56 0.08
456 8 0.01
457 151 0.21
459 73 0.10
460 214 0.30
461 156 0.22
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (456 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTCTCGTAATATGAGTTGAATTTTGA
AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
TTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCG
CAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
TTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGC
GTGCCCCGAGGCTCAACTCACCTCCCGCATTATGAGTTAATTTTTTTTGAAAGATAGAAATTGAA
AATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA
T
Found at i:107166606 original size:223 final size:223
Alignment explanation
Indices: 107166187--107166663 Score: 697
Period size: 223 Copynumber: 2.1 Consensus size: 223
107166177 AAATTGCCAA
* *
107166187 TACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCCCGCATTATGAGTTAATTTTGTTTTTTGAAA
1 TACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCCCGCAATATGAGTCAATTTTGTTTTTTGAAA
* *
107166251 GATAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
65 AACAGAAATTGAAAATACCTCAGCATGT--ACCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
107166316 ATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGTAATA
128 AATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTACTCGCAATA
**
107166381 TGAGTTGAATTTTGAAAACAGAAATTGAAAT
193 TGAGTTGAATTTTGAAAACAGAAATAAAAAT
** *
107166412 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTCAATTTTTTTTTTTGAAAA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCCCGCAATATGAGTCAATTTTGTTTTTTGAAAA
* * *
107166477 ACAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCACTTCTCGCAATCTGAGTTGAA
66 ACAGAAATTGAAAATACCTCAGCATGTAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * *
107166541 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAATTCATTTCTCGCAATATG
130 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTACTCGCAATATG
*
107166606 AGTTGAATTTTGAAAATAGAAATAAAAAT
195 AGTTGAATTTTGAAAACAGAAATAAAAAT
* * *
107166635 TACCTTAACGTGTCTTGAGGCTCAACTCA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCA
107166664 TTTCTCGTAA
Statistics
Matches: 227, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
222 1 0.00
223 142 0.63
225 82 0.36
226 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (223 bp):
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCCCGCAATATGAGTCAATTTTGTTTTTTGAAAA
ACAGAAATTGAAAATACCTCAGCATGTACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTACTCGCAATATGA
GTTGAATTTTGAAAACAGAAATAAAAAT
Found at i:107170071 original size:40 final size:40
Alignment explanation
Indices: 107170012--107170153 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
107170002 AAATTGAATG
* * *
107170012 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
107170052 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
107170092 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
107170132 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
107170154 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:107170154 original size:40 final size:39
Alignment explanation
Indices: 107170051--107170179 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
107170041 TGCTGGAAAT
* * *
107170051 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
107170091 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
107170131 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
107170171 TATATCCGG
1 TATATCCGG
107170180 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:107178108 original size:40 final size:40
Alignment explanation
Indices: 107178049--107178190 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
107178039 AAATTGAATG
* * *
107178049 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
107178089 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
107178129 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
107178169 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
107178191 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:107178191 original size:40 final size:39
Alignment explanation
Indices: 107178088--107178216 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
107178078 TGCTGGAAAT
* * *
107178088 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
107178128 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
107178168 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
107178208 TATATCCGG
1 TATATCCGG
107178217 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:107189970 original size:17 final size:19
Alignment explanation
Indices: 107189929--107189970 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
107189919 CTAGTAATGT
107189929 TAAA-ATATATATAATATA
1 TAAATATATATATAATATA
*
107189947 TACATATATATATAA-A-A
1 TAAATATATATATAATATA
107189964 TAAATAT
1 TAAATAT
107189971 TGAAAAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 7 0.33
18 4 0.19
19 10 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAATATATATATAATATA
Found at i:107190281 original size:3 final size:3
Alignment explanation
Indices: 107190257--107190648 Score: 276
Period size: 3 Copynumber: 128.7 Consensus size: 3
107190247 AAGTACCTAT
* * * *
107190257 TAA TAA TAT TATA TAA -ATA TAA TAA TAA TAT TTA TAAA TAA TAA TAG
1 TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA T-AA TAA TAA TAA
* * *
107190304 TAA T-G TAA TAA TAA TAA TAA TAT TAA GT-A TAA T-A TAAA TAA TATG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A
* * *
107190349 TACA TAA CAG TAA TAA TAA GTAA CAA TAA TAA TAA TAA T-A TAGA -AA
1 TA-A TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* *
107190395 TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
107190437 TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA
1 TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* *
107190485 TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAT TAA GT-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* * * * *
107190530 TAG T-A TAAA TAA TATG TACA TAA CAG TAA TAA TAA TAA GTAA CAA TAA
1 TAA TAA T-AA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA -TAA TAA TAA
107190578 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
107190626 TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
107190649 TATAGAAATT
Statistics
Matches: 308, Mismatches: 46, Indels: 70
0.73 0.11 0.17
Matches are distributed among these distances:
2 24 0.08
3 246 0.80
4 34 0.11
5 4 0.01
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:107190378 original size:16 final size:16
Alignment explanation
Indices: 107190353--107190383 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107190343 AATATGTACA
*
107190353 TAACAGTAATAATAAG
1 TAACAATAATAATAAG
107190369 TAACAATAATAATAA
1 TAACAATAATAATAA
107190384 TAATATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (16 bp):
TAACAATAATAATAAG
Found at i:107190708 original size:16 final size:16
Alignment explanation
Indices: 107190582--107190707 Score: 60
Period size: 18 Copynumber: 7.1 Consensus size: 16
107190572 CAATAATAAT
*
107190582 AATAATAATAATAATAA
1 AATAA-AATAATATTAA
*
107190599 TAATAATAATAATAATAA
1 -AATAA-AATAATATTAA
*
107190617 TAATAATAATAATAATAA
1 -AATAA-AATAATATTAA
107190635 TAATAATAATAATATATAGA
1 -AATAA-AATAATAT-TA-A
*
107190655 AATTCAAAA-AA-ACTAA
1 AA-T-AAAATAATATTAA
107190671 ACATAATATAATAATATTAA
1 A-AT-A-A-AATAATATTAA
107190691 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
107190706 AA
1 AA
107190708 AATACTATGT
Statistics
Matches: 95, Mismatches: 4, Indels: 21
0.79 0.03 0.17
Matches are distributed among these distances:
15 6 0.06
16 10 0.11
17 5 0.05
18 53 0.56
19 10 0.11
20 9 0.09
21 2 0.02
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:107195523 original size:25 final size:25
Alignment explanation
Indices: 107195495--107195625 Score: 124
Period size: 25 Copynumber: 5.2 Consensus size: 25
107195485 TCCTAATACT
* *
107195495 TGGCTTTCATGAGTTTCTCGATTAA
1 TGGCTCTCATGAGCTTCTCGATTAA
* *
107195520 TGGCTCTCTTGAGCTTCCCGATTAA
1 TGGCTCTCATGAGCTTCTCGATTAA
* * *
107195545 TAGCTCTCTTGAGCTTCTCGATAAA
1 TGGCTCTCATGAGCTTCTCGATTAA
*
107195570 TGGCTCGCATGAGCTTCTCGATATACA
1 TGGCTCTCATGAGCTTCTCGAT-TA-A
* *
107195597 --GCTCACATGAGCTTCCCG-TTATA
1 TGGCTCTCATGAGCTTCTCGATTA-A
107195620 TGGCTC
1 TGGCTC
107195626 GGAAGAGCTC
Statistics
Matches: 88, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
23 3 0.03
24 1 0.01
25 82 0.93
26 1 0.01
27 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (25 bp):
TGGCTCTCATGAGCTTCTCGATTAA
Found at i:107195563 original size:50 final size:50
Alignment explanation
Indices: 107195502--107195644 Score: 137
Period size: 50 Copynumber: 2.9 Consensus size: 50
107195492 ACTTGGCTTT
* * * * *
107195502 CATGAGTTTCTCGATTAATGGCTCTCTTGAGCTTCCCGAT-TAATAGCTCT
1 CATGAGCTTCTCGATTAATGGCTCGCATGAGCTTCCCGATAT-ACAGCTCA
* * *
107195552 CTTGAGCTTCTCGATAAATGGCTCGCATGAGCTTCTCGATATACAGCTCA
1 CATGAGCTTCTCGATTAATGGCTCGCATGAGCTTCCCGATATACAGCTCA
* * * * *
107195602 CATGAGCTTCCCG-TTATATGGCTCGGAAGAGCTCCCCGTTATA
1 CATGAGCTTCTCGATTA-ATGGCTCGCATGAGCTTCCCGATATA
107195645 TGGCATGTAT
Statistics
Matches: 75, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
49 2 0.03
50 72 0.96
51 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (50 bp):
CATGAGCTTCTCGATTAATGGCTCGCATGAGCTTCCCGATATACAGCTCA
Found at i:107197560 original size:22 final size:23
Alignment explanation
Indices: 107197512--107197561 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
107197502 GAATTGAAAG
*
107197512 TTTAAAACATTTTTATAAAATGA
1 TTTAAAACATTTTTAGAAAATGA
* *
107197535 -TTAAAATATTTTTAGACAA-GA
1 TTTAAAACATTTTTAGAAAATGA
107197556 TTTAAA
1 TTTAAA
107197562 GTTTTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (23 bp):
TTTAAAACATTTTTAGAAAATGA
Found at i:107199941 original size:27 final size:27
Alignment explanation
Indices: 107199906--107200091 Score: 300
Period size: 27 Copynumber: 6.9 Consensus size: 27
107199896 AAATACTTTG
* *
107199906 GTTTATAAAATTACAAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
107199933 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
107199960 GTTTGTAAAATTATCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
107199987 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
107200014 GTTTGTAAAATTATCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
107200041 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
* * **
107200068 ATTTGTGAAATTACTGAAATACCC
1 GTTTGTAAAATTACCAAAATACCC
107200092 TCGACCTGTA
Statistics
Matches: 149, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTA
Found at i:107200102 original size:81 final size:81
Alignment explanation
Indices: 107199911--107200145 Score: 276
Period size: 81 Copynumber: 2.9 Consensus size: 81
107199901 CTTTGGTTTA
* * ** * *
107199911 TAAAATTACAAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCA
1 TAAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
*
107199976 AAATACCCCTAGTTTG
66 AAATACCCCTAATTTG
* **
107199992 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 TAAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
107200057 AAATACCCCTAATTTG
66 AAATACCCCTAATTTG
* ** ** * *
107200073 TGAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTAC
1 TAAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTAC
*
107200136 CAAAGTACCC
64 CAAAATACCC
107200146 TCGATTTATA
Statistics
Matches: 137, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
80 5 0.04
81 130 0.95
82 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
AAATACCCCTAATTTG
Found at i:107200105 original size:27 final size:27
Alignment explanation
Indices: 107200075--107200149 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
107200065 CTAATTTGTG
107200075 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
107200102 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
107200129 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
107200150 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:107200161 original size:54 final size:54
Alignment explanation
Indices: 107199962--107200272 Score: 150
Period size: 54 Copynumber: 5.8 Consensus size: 54
107199952 TACCCCTAGT
* * * * * * * *
107199962 TTGTAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-C
* * * * * * * *
107200016 TTGTAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAAT
1 TTGTAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GAC
* * ** * * **
107200070 TTGTGAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGAC
*** *
107200124 TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAT
1 TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGAC
**** *** *
107200178 TTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AG
1 TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGAC
* ***
107200231 TT-TACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 TTGTA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCG
107200273 TTTTACCCCT
Statistics
Matches: 219, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.01
53 7 0.03
54 203 0.93
55 7 0.03
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (54 bp):
TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGAC
Found at i:107200487 original size:27 final size:27
Alignment explanation
Indices: 107200141--107200486 Score: 419
Period size: 27 Copynumber: 12.8 Consensus size: 27
107200131 ATTACCAAAG
*
107200141 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
107200168 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
107200195 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
107200222 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
107200249 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
107200276 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* * *
107200303 TACCC-CAGATTTACATAATTATCGCTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
107200330 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
107200357 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
107200384 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
107200411 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
107200438 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
107200465 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
107200487 TAAAATACCC
Statistics
Matches: 283, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 279 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:107200523 original size:81 final size:81
Alignment explanation
Indices: 107200168--107200530 Score: 203
Period size: 81 Copynumber: 4.5 Consensus size: 81
107200158 ATTACCGTTT
* ** *** * * *
107200168 TACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA-T
* ***
107200232 TTACAGAATTACTATTT
65 TTACAAAATTACTAAAA
* * * *** * *
107200249 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCATTTTACCC-CAGA
1 TACCCTTGATTTACAAAATTACCGCAATACCCTC-GATTTACAAAATTACCATTTTACCCTC-GA
* ****
107200312 TTTACATAATTA-TCGCTT
64 TTTACAAAATTACT-AAAA
* * * *** *
107200330 TATCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* * ****
107200395 TATAGAATTACTGTTT
66 TACAAAATTACTAAAA
* *** * **
107200411 TACCCTTGATTTACAAAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
107200476 TACAAAATTACTAAAA
66 TACAAAATTACTAAAA
* *** *
107200492 TACCCTTGGTTTGTGAAATTACCGCAATACCCTCAATTT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTT
107200531 GTAAAACTAC
Statistics
Matches: 235, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
80 3 0.01
81 228 0.97
82 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
TACAAAATTACTAAAA
Found at i:107201752 original size:25 final size:25
Alignment explanation
Indices: 107201723--107201770 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
107201713 TTATAATATG
* * *
107201723 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
107201748 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
107201771 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:107201839 original size:20 final size:20
Alignment explanation
Indices: 107201814--107201872 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
107201804 TAAATATGGT
107201814 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
107201834 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
107201854 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
107201873 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:107201950 original size:24 final size:24
Alignment explanation
Indices: 107201923--107202075 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
107201913 GAGGAAGTGA
107201923 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
107201947 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
107201971 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
107201995 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
107202018 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
107202042 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
107202066 AAAAGAGGCT
1 AAAAG-GGCT
107202076 AGGCCTACAG
Statistics
Matches: 122, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
23 23 0.19
24 95 0.78
25 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:107202324 original size:38 final size:38
Alignment explanation
Indices: 107202281--107202381 Score: 117
Period size: 31 Copynumber: 2.8 Consensus size: 38
107202271 CGTTTACAGT
107202281 AATATGAAATATAAAAAGGCTTCGGCCCAGTAATATGA
1 AATATGAAATATAAAAAGGCTTCGGCCCAGTAATATGA
*
107202319 AATATG-------AAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATAAAAAGGCTTCGGCCCAGTAATATGA
* *
107202350 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATAT-AAAAAGGCTTCGGCCCAGT
107202382 GCATGATTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 15
0.74 0.04 0.21
Matches are distributed among these distances:
31 30 0.58
38 6 0.12
39 16 0.31
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.23
Consensus pattern (38 bp):
AATATGAAATATAAAAAGGCTTCGGCCCAGTAATATGA
Found at i:107202355 original size:31 final size:31
Alignment explanation
Indices: 107202277--107202358 Score: 146
Period size: 31 Copynumber: 2.6 Consensus size: 31
107202267 ATACCGTTTA
*
107202277 CAGTAATATGAAATATAAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
107202308 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
*
107202339 CAGTATTATGAAATATGAAA
1 CAGTAATATGAAATATGAAA
107202359 TATGAAAAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:107203329 original size:31 final size:31
Alignment explanation
Indices: 107203291--107203349 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
107203281 CAAAAACTAA
107203291 GGAACAATATCAAATTTTACTTAAGTCCTAG
1 GGAACAATATCAAATTTTACTTAAGTCCTAG
107203322 GGAACAATATCAAATTTTACTTAAGTCC
1 GGAACAATATCAAATTTTACTTAAGTCC
107203350 GATATCATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (31 bp):
GGAACAATATCAAATTTTACTTAAGTCCTAG
Found at i:107203370 original size:14 final size:14
Alignment explanation
Indices: 107203351--107203389 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
107203341 CTTAAGTCCG
107203351 ATATCATGCATCCT
1 ATATCATGCATCCT
107203365 ATATCATGCATCCT
1 ATATCATGCATCCT
107203379 ATATCATGCAT
1 ATATCATGCAT
107203390 TATCCGATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (14 bp):
ATATCATGCATCCT
Found at i:107208372 original size:20 final size:22
Alignment explanation
Indices: 107208347--107208388 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
107208337 TGTATAGTGG
107208347 AAAATTTTCT-AAGTT-TTGGT
1 AAAATTTTCTAAAGTTCTTGGT
107208367 AAAATTTTCTAAAGTTCTTGGT
1 AAAATTTTCTAAAGTTCTTGGT
107208389 TTGGTTCCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 5 0.25
22 5 0.25
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (22 bp):
AAAATTTTCTAAAGTTCTTGGT
Found at i:107209100 original size:31 final size:31
Alignment explanation
Indices: 107209062--107209123 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
107209052 GCTTGAGAAT
107209062 ACTATCAGGGTATTTGATGAGTTATCATGTA
1 ACTATCAGGGTATTTGATGAGTTATCATGTA
107209093 ACTATCAGGGTATTTGATGAGTTATCATGTA
1 ACTATCAGGGTATTTGATGAGTTATCATGTA
107209124 CACCCGAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (31 bp):
ACTATCAGGGTATTTGATGAGTTATCATGTA
Found at i:107216541 original size:18 final size:18
Alignment explanation
Indices: 107216518--107216553 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
107216508 TCGGTGATAA
*
107216518 AGTATTTTTGAAAGTATC
1 AGTATTTCTGAAAGTATC
107216536 AGTATTTCTGAAAGTATC
1 AGTATTTCTGAAAGTATC
107216554 TTCGTGGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (18 bp):
AGTATTTCTGAAAGTATC
Found at i:107226678 original size:29 final size:29
Alignment explanation
Indices: 107226610--107226734 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
107226600 AAGTCTACAT
* * *
107226610 ACATACATATGGCCCACTAGGACC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
107226638 TCAGTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
107226667 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
107226696 ACATTCATATGGCCCATTAGACCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
107226725 ACATTCATAT
1 ACATTCATAT
107226735 ACATGCTTTC
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 19 0.23
29 65 0.77
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:107231084 original size:29 final size:29
Alignment explanation
Indices: 107231013--107231108 Score: 113
Period size: 29 Copynumber: 3.3 Consensus size: 29
107231003 AAGTCTACAT
* *
107231013 ACATGCATATGGCCCACTAGG-CCTAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* * *
107231041 ACATTCGTATGGCCCAGTAGGCCCAAATA
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
107231070 ACATTCATATCGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
107231099 CCATTCATAT
1 ACATTCATAT
107231109 ACATGCTTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 18 0.32
29 39 0.68
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:107232740 original size:17 final size:17
Alignment explanation
Indices: 107232706--107232740 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
107232696 AAGTGAAAAA
*
107232706 TCATATTTCTATTAATC
1 TCATATTTCCATTAATC
*
107232723 TCATATTTCCATTGATC
1 TCATATTTCCATTAATC
107232740 T
1 T
107232741 TTATATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.20, G:0.03, T:0.51
Consensus pattern (17 bp):
TCATATTTCCATTAATC
Found at i:107235212 original size:6 final size:6
Alignment explanation
Indices: 107235201--107235227 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
107235191 GCAGTAAACA
107235201 AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAA
107235228 TCTAAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:107236270 original size:10 final size:10
Alignment explanation
Indices: 107236255--107236288 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
107236245 AGCAAACAAA
107236255 ATAAATAAAT
1 ATAAATAAAT
107236265 ATAAATAAAT
1 ATAAATAAAT
*
107236275 ATATATAAA-
1 ATAAATAAAT
107236284 ATAAA
1 ATAAA
107236289 ATATAAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
ATAAATAAAT
Found at i:107236272 original size:14 final size:14
Alignment explanation
Indices: 107236253--107236297 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
107236243 TTAGCAAACA
107236253 AAATAAATAAATAT
1 AAATAAATAAATAT
*
107236267 AAATAAATATATAT
1 AAATAAATAAATAT
*
107236281 AAA-ATA-AAATAT
1 AAATAAATAAATAT
107236293 AAATA
1 AAATA
107236298 GAATGATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 8 0.30
13 3 0.11
14 16 0.59
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATAAATAAATAT
Found at i:107240391 original size:2 final size:2
Alignment explanation
Indices: 107240384--107240414 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
107240374 GACTAATTGT
107240384 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107240415 TTGATGTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107248532 original size:2 final size:2
Alignment explanation
Indices: 107248525--107248551 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107248515 GACTAATTGT
107248525 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
107248552 TTGATATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107255071 original size:18 final size:19
Alignment explanation
Indices: 107255048--107255088 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
107255038 CATTCACATC
107255048 TTTTCTCTCTTCTCT-CCA
1 TTTTCTCTCTTCTCTGCCA
*
107255066 TTTTCTCTCTTCTTTGCCA
1 TTTTCTCTCTTCTCTGCCA
107255085 TTTT
1 TTTT
107255089 AATTTCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.05, C:0.32, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTCTCTCTTCTCTGCCA
Found at i:107257840 original size:79 final size:82
Alignment explanation
Indices: 107257724--107257908 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
107257714 ATGACTCGCT
** * *
107257724 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
107257787 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
107257804 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
107257867 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
107257884 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
107257909 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:107257908 original size:40 final size:39
Alignment explanation
Indices: 107257705--107257908 Score: 169
Period size: 40 Copynumber: 5.1 Consensus size: 39
107257695 TCGAATTTAA
* * * **
107257705 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAGTAACTCGCACAAA-GCCTTCGGGACTTAGC
* * * *
107257745 CCGGTTATAGTGACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCAC-AAAGCCTTCGGGACTTAGC
* * *
107257785 CCGGGTTTAGTAACTTGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAA-GCCTTCGGGACTTAGC
* * * * *
107257824 CCGGATTTATTAACTCGCACGAATGCCTTC-GGATCCTAGT
1 CCGGATATAGTAACTCGCAC-AAAGCCTTCGGGA-CTTAGC
* *
107257864 CCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGC
107257904 CCGGA
1 CCGGA
107257909 CATCATTCGA
Statistics
Matches: 131, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.23
40 89 0.68
41 10 0.08
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
Found at i:107259902 original size:25 final size:25
Alignment explanation
Indices: 107259874--107259932 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
107259864 AAATTTTCTC
107259874 CTAAATTTT-AATTTTATTCAATTAT
1 CTAAATTTTCAA-TTTATTCAATTAT
*
107259899 CTAAATTTTCAATTTATTGAATTAT
1 CTAAATTTTCAATTTATTCAATTAT
107259924 -TAATATTTT
1 CTAA-ATTTT
107259933 TTATTAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 3 0.10
25 26 0.84
26 2 0.06
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (25 bp):
CTAAATTTTCAATTTATTCAATTAT
Found at i:107263233 original size:18 final size:19
Alignment explanation
Indices: 107263210--107263250 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
107263200 CATTCACATC
107263210 TTTTCTCTCTT-TTCTCCA
1 TTTTCTCTCTTCTTCTCCA
*
107263228 TTTTCTCTCTTCTTTTCCA
1 TTTTCTCTCTTCTTCTCCA
107263247 TTTT
1 TTTT
107263251 AAATTCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTCTCTCTTCTTCTCCA
Found at i:107267303 original size:20 final size:23
Alignment explanation
Indices: 107267256--107267304 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 23
107267246 CATTACAAAT
107267256 TTTTTAGCACATGTATTCATAAA
1 TTTTTAGCACATGTATTCATAAA
* *
107267279 ATTTTAG-A-ATGT-TTCATCAA
1 TTTTTAGCACATGTATTCATAAA
107267299 TTTTTA
1 TTTTTA
107267305 CAACTTTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 12 0.52
21 4 0.17
22 1 0.04
23 6 0.26
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (23 bp):
TTTTTAGCACATGTATTCATAAA
Found at i:107269160 original size:55 final size:53
Alignment explanation
Indices: 107269082--107269336 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 53
107269072 ATTAGAGTTT
107269082 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * *
107269137 AAGGATACCATGTAAGATCATGCCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * * *
107269192 AAAGG-TCCCATGAAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
** *
107269245 AAGGATACCATGTAAGACCATATCGAGACATGGGAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GGAATTGGTAAGTTTCTAAGGC
* * *
107269294 AAGGATACCACGTAAGACCAT-CACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGC-CAAGACATGGAATTGGTAAG
107269337 GTACCCGTGG
Statistics
Matches: 168, Mismatches: 23, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
48 4 0.02
49 33 0.20
52 7 0.04
53 35 0.21
54 14 0.08
55 71 0.42
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:107269288 original size:108 final size:110
Alignment explanation
Indices: 107269089--107269289 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
107269079 TTTAAGGATA
*
107269089 CCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGAAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
107269154 TCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATACCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
107269199 CCATGAAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGAAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * * *
107269261 ACCATATCGAGACATGGGAATGGTAAGTT
65 ACCATACCAAGACATGGCAATGATAAGTT
107269290 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGAAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATACCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:107269539 original size:16 final size:16
Alignment explanation
Indices: 107269518--107269548 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107269508 ATAAATTTGA
107269518 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
107269534 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
107269549 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:107276755 original size:27 final size:26
Alignment explanation
Indices: 107276696--107276775 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
107276686 ATTTGCTTTG
** * *
107276696 TGTATTATAGATTTTAAAATGCTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
** *
107276722 TACATTATTTATTTTAAACTTGTTTTA
1 TGTATTATTCATTTTAAA-TTGTTTTA
107276749 TGTATTATTCATTTTAAATTGTTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
107276775 T
1 T
107276776 TGTTTACTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (26 bp):
TGTATTATTCATTTTAAATTGTTTTA
Found at i:107279613 original size:55 final size:53
Alignment explanation
Indices: 107279526--107279780 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 53
107279516 CATTAGGGTT
*
107279526 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * *
107279581 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * * *
107279636 AAAGG-TCCCATGTAAAACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* * * *
107279689 AAGGATACCATGTAGGACCATGTCGAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
* *
107279738 AAGGATACCACGTAAGACCAT-CACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGC-CAAGACATGG-AATTGGTAAG
107279781 GTACCCCGTG
Statistics
Matches: 166, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
49 34 0.20
50 2 0.01
52 7 0.04
53 38 0.23
54 11 0.07
55 70 0.42
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:107279732 original size:108 final size:110
Alignment explanation
Indices: 107279533--107279733 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
107279523 GTTAAGGATA
*
107279533 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
107279598 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * *
107279643 CCATGTAAAACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAGG
1 CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
107279705 ACCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
107279734 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:107284744 original size:2 final size:2
Alignment explanation
Indices: 107284737--107284763 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107284727 TACTAAGAAA
107284737 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
107284764 AATAATAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107284793 original size:33 final size:30
Alignment explanation
Indices: 107284749--107284818 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
107284739 ATATATATAT
*
107284749 ATATATATATATATAAATAATAGTATTAGAA
1 ATATATATATATATAAATAATAATATTA-AA
* *
107284780 ATCATATAGTATATATAACTGATAATATTAAA
1 AT-ATATA-TATATATAAATAATAATATTAAA
107284812 ATATATA
1 ATATATA
107284819 CATAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (30 bp):
ATATATATATATATAAATAATAATATTAAA
Found at i:107285039 original size:3 final size:3
Alignment explanation
Indices: 107285031--107285084 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
107285021 ACAAGGATAT
107285031 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
107285079 ATA ATA
1 ATA ATA
107285085 TTGAAACACA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:107285194 original size:3 final size:3
Alignment explanation
Indices: 107285186--107285234 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
107285176 AATGTATTTC
107285186 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
107285234 A
1 A
107285235 TTGAAATGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:107286284 original size:35 final size:35
Alignment explanation
Indices: 107286238--107286306 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
107286228 GAGTGTGTGA
*
107286238 TGGTGTTGGTGGCAGACAGCATGAGAGAATGGGAG
1 TGGTGCTGGTGGCAGACAGCATGAGAGAATGGGAG
* *
107286273 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGAGAGAATGGGA
107286307 AGAGGCAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.23, C:0.10, G:0.48, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGAGAGAATGGGAG
Found at i:107287063 original size:74 final size:74
Alignment explanation
Indices: 107286897--107287814 Score: 1279
Period size: 73 Copynumber: 12.5 Consensus size: 74
107286887 GTGATCCTGA
* * *
107286897 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAACATACAAA-AAACTGACAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ATAGAAATTAA---A-ATTACCT
* **
107286959 CAGCATGTCTTGAG
61 CAGCGTGTCCCGAG
** * *
107286973 GCTCAACTTGCCTCTCGTAATATGAGTTGATTTTTTTGAAAATAGAAATTGAAAA-TACCTCAAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATT-AAAATTACCTCAGC
**
107287037 GTGTCTTGAG
65 GTGTCCCGAG
** *
107287047 GCTCAACTCATTTCTCGCAATATGAGTTGA---TTTTGAAAACAGAAATTAAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
107287109 TGTCCCGAG
66 TGTCCCGAG
* *
107287118 GCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
*
107287183 TGTCCCAAG
66 TGTCCCGAG
107287192 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
*
107287257 TGTCCTGAG
66 TGTCCCGAG
** * * *
107287266 GCTCAACTCATTTCTCGCAATATGAATTGATTTTTTTTAAAAATAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAATAGAAATTAAAATTACCTCAGC
107287331 GTGTCCCGAG
65 GTGTCCCGAG
*
107287341 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAATAGAAATTAAAATTACCTCAGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
107287405 TGT-CCGAG
66 TGTCCCGAG
* *
107287413 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAACTAAAATTACCTCAGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
107287478 TG-CCCGAG
66 TGTCCCGAG
* *
107287486 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAACTAAAATTACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
*
107287551 TGTCCTGAG
66 TGTCCCGAG
* *
107287560 GCTCAACTCA--TCTCGCAATATGAGTTGATTTTTTTTAAAAATAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAATAGAAATTAAAATTACCTCAGC
107287623 GTGTCCCGAG
65 GTGTCCCGAG
107287633 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-AAAATAGAAATTAAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
*
107287696 TGTCCTGAG
66 TGTCCCGAG
** * *
107287705 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAAATAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAATAGAAATTAAAATTACCTCAGC
*
107287770 GTGTCCTGAG
65 GTGTCCCGAG
* ** *
107287780 GCTCAACCCATTTCTCGCAATATGAGTTGAATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
107287815 GAAAACAGAA
Statistics
Matches: 770, Mismatches: 54, Indels: 37
0.89 0.06 0.04
Matches are distributed among these distances:
70 4 0.01
71 59 0.08
72 115 0.15
73 200 0.26
74 192 0.25
75 155 0.20
76 28 0.04
77 6 0.01
78 9 0.01
79 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (74 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
TGTCCCGAG
Found at i:107287165 original size:145 final size:146
Alignment explanation
Indices: 107286897--107287824 Score: 1296
Period size: 145 Copynumber: 6.3 Consensus size: 146
107286887 GTGATCCTGA
* * *
107286897 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACAAA-AAACTGACAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAAATTAA---A-ATTACCTCA
* * ** * *
107286961 GCATGTCTTGAGGCTCAACTTGCCTCTCGTAATATGAGTTGATTTTTTTGAAAATAGAAATTGAA
61 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATAGAAATTGAA
* **
107287026 AATACCTCAACGTGTCTTGAG
126 AATACCTCAGCGTGTCCCGAG
** *
107287047 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAACAGAAATTAAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTAAAATTACCTCAGCGTG
* * *
107287111 TCCCGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATT-AAAATTA
66 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATAGAAATTGAAAA-TA
* *
107287175 CCTCAGTGTGTCCCAAG
130 CCTCAGCGTGTCCCGAG
107287192 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAATAGAAATTAAAATTACCTCAGCG
** * *
107287257 TGTCCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTTTTAAAAATAGAAATTGAAAT
64 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAAATAGAAATTGAAAA
107287322 TACCTCAGCGTGTCCCGAG
128 TACCTCAGCGTGTCCCGAG
*
107287341 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTAAAATTACCTCAGTGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAATAGAAATTAAAATTACCTCAGCGT
* *
107287406 GTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAACT-AAAATT
65 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATAGAAATTGAAAA-T
*
107287469 ACCTCAGTGTG-CCCGAG
129 ACCTCAGCGTGTCCCGAG
* *
107287486 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAACTAAAATTACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAATAGAAATTAAAATTACCTCAGCG
*
107287551 TGTCCTGAGGCTCAACTCA--TCTCGCAATATGAGTTGATTTTTTTTAAAAATAGAAATTGAAAT
64 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAAATAGAAATTGAAAA
107287614 TACCTCAGCGTGTCCCGAG
128 TACCTCAGCGTGTCCCGAG
*
107287633 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAATAGAAATTAAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTAAAATTACCTCAGCGTG
** *
107287698 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAAATAGAAATTGAAATTA
66 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAAAATAGAAATTGAAAATA
*
107287763 CCTCAGCGTGTCCTGAG
130 CCTCAGCGTGTCCCGAG
* ** * *
107287780 GCTCAACCCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAA
107287825 GTAACAGCAT
Statistics
Matches: 707, Mismatches: 55, Indels: 35
0.89 0.07 0.04
Matches are distributed among these distances:
144 4 0.01
145 211 0.30
146 102 0.14
147 175 0.25
148 108 0.15
149 76 0.11
150 31 0.04
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (146 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTAAAATTACCTCAGCGTG
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATAGAAATTGAAAATAC
CTCAGCGTGTCCCGAG
Found at i:107300276 original size:33 final size:30
Alignment explanation
Indices: 107300216--107300285 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 30
107300206 TAAGAAATAT
*
107300216 ATATATATATATAATAATAATAGTATTAGAA
1 ATATATATATATAATAATAATAATATTA-AA
*
107300247 ATCATATAGTATAT-ATAACTGATAATATTAAA
1 AT-ATATA-TATATAATAA-TAATAATATTAAA
107300279 ATATATA
1 ATATATA
107300286 CATAATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
31 7 0.21
32 13 0.38
33 14 0.41
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (30 bp):
ATATATATATATAATAATAATAATATTAAA
Found at i:107300509 original size:3 final size:3
Alignment explanation
Indices: 107300501--107300551 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
107300491 ACAAGGATAT
107300501 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
107300549 ATA
1 ATA
107300552 TTGAAACACA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:107300671 original size:3 final size:3
Alignment explanation
Indices: 107300657--107300893 Score: 162
Period size: 3 Copynumber: 76.3 Consensus size: 3
107300647 AATGTATTTC
*
107300657 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
107300705 AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT ATAT GA- AAC AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * * * * *
107300749 ATAT AAA AAT ATT AA- AAT AA- AGT AAT AGA- AAC ATT ACT ACAT ATAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A-AT A-AT
* * * * * *
107300795 ATAT ACAT ACAT GAAG ATAT ACACT AAT -GT ATTT CAAT AAC AAC AAC
1 A-AT A-AT A-AT -AAT A-AT A-A-T AAT AAT A-AT -AAT AAT AAT AAT
107300842 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
107300890 AAT A
1 AAT A
107300894 TTGAAATGCA
Statistics
Matches: 193, Mismatches: 26, Indels: 30
0.78 0.10 0.12
Matches are distributed among these distances:
2 8 0.04
3 153 0.79
4 28 0.15
5 4 0.02
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:107301394 original size:11 final size:12
Alignment explanation
Indices: 107301378--107301413 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
107301368 AGAAAAAAAA
107301378 GAAGAGAG-AGG
1 GAAGAGAGAAGG
107301389 GAAGAGAGAAGG
1 GAAGAGAGAAGG
107301401 G-AGAGAGAAGG
1 GAAGAGAGAAGG
107301412 GA
1 GA
107301414 GGGAAATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:107301515 original size:11 final size:11
Alignment explanation
Indices: 107301499--107301526 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
107301489 GGGTAATTTT
107301499 TTTTTTGTATA
1 TTTTTTGTATA
107301510 TTTTTTGTATA
1 TTTTTTGTATA
107301521 TTTTTT
1 TTTTTT
107301527 TTATGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTGTATA
Found at i:107301884 original size:83 final size:83
Alignment explanation
Indices: 107301765--107301930 Score: 298
Period size: 82 Copynumber: 2.0 Consensus size: 83
107301755 AAATGAAAGA
*
107301765 AAAAAAAAAGAAGAGTCCCCCCCTTTACAATCTTTTTCATTCGGCTTTTTATAGCCTTATTTACA
1 AAAAAAAAAGAAGAGTCCCCCCCTTTACAATCTTTTTCATTCGAC-TTTTATAGCCTTATTTACA
107301830 AACTATTTTTTTACTATTT
65 AACTATTTTTTTACTATTT
*
107301849 AAAAAAGAAGAAGAGT-CCCCCCTTTACAATCTTTTTCATTCGACTTTTATAGCCTTATTTACAA
1 AAAAAAAAAGAAGAGTCCCCCCCTTTACAATCTTTTTCATTCGACTTTTATAGCCTTATTTACAA
107301913 ACTATTTTTTTACTATTT
66 ACTATTTTTTTACTATTT
107301931 CTACTATTGT
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
82 38 0.47
83 27 0.34
84 15 0.19
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (83 bp):
AAAAAAAAAGAAGAGTCCCCCCCTTTACAATCTTTTTCATTCGACTTTTATAGCCTTATTTACAA
ACTATTTTTTTACTATTT
Found at i:107303969 original size:3 final size:3
Alignment explanation
Indices: 107303961--107303999 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
107303951 TTTTCATTTA
107303961 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA
107304000 ACGCGATGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:107304144 original size:14 final size:14
Alignment explanation
Indices: 107304120--107304158 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
107304110 GTTAAAACTT
107304120 TAAAT-TATTTTTA
1 TAAATATATTTTTA
107304133 TAAA-ATATTTTTA
1 TAAATATATTTTTA
107304146 TAAATATATTTTT
1 TAAATATATTTTT
107304159 TATATAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 16 0.67
14 8 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAAATATATTTTTA
Found at i:107306506 original size:50 final size:52
Alignment explanation
Indices: 107306442--107306559 Score: 177
Period size: 50 Copynumber: 2.3 Consensus size: 52
107306432 TTAATAAAGT
* *
107306442 CATGCATTATGTAACTCTCATGTTAATT-AAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTTAATTAAAGTTTGCATCATTAAATTAAGA
* *
107306492 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGC
1 CATGCATTATGTAACTCCCATGTTAATTAAAGTTTGCATCATTAAATTAAGA
*
107306544 CATGCATTAAGTAACT
1 CATGCATTATGTAACT
107306560 TATTTGTTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 26 0.43
51 12 0.20
52 23 0.38
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAATTAAAGTTTGCATCATTAAATTAAGA
Found at i:107307074 original size:20 final size:20
Alignment explanation
Indices: 107307051--107307091 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
107307041 TGCACACGCT
107307051 CGTGTGCTTTGGGACACCCC
1 CGTGTGCTTTGGGACACCCC
107307071 CGTGTGCTTTGGGACACCCC
1 CGTGTGCTTTGGGACACCCC
107307091 C
1 C
107307092 ATGTCCCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.10, C:0.37, G:0.29, T:0.24
Consensus pattern (20 bp):
CGTGTGCTTTGGGACACCCC
Found at i:107312652 original size:46 final size:46
Alignment explanation
Indices: 107312599--107312869 Score: 334
Period size: 46 Copynumber: 5.9 Consensus size: 46
107312589 AGATATTTGG
*
107312599 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*
107312645 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*
107312691 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * * * * * *
107312737 ATGTTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA
107312783 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * *
107312831 CGC-T-CGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107312870 GTGGGTTACA
Statistics
Matches: 194, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.01
46 155 0.80
47 34 0.18
48 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:107337947 original size:15 final size:16
Alignment explanation
Indices: 107337929--107337958 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107337919 AAATCGAAGT
107337929 GAAAAA-AATTTGAAA
1 GAAAAACAATTTGAAA
107337944 GAAAAACAATTTGAA
1 GAAAAACAATTTGAA
107337959 GTTGAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.03, G:0.13, T:0.20
Consensus pattern (16 bp):
GAAAAACAATTTGAAA
Found at i:107340884 original size:50 final size:52
Alignment explanation
Indices: 107340824--107340942 Score: 170
Period size: 50 Copynumber: 2.3 Consensus size: 52
107340814 TTAATAAAGT
* * *
107340824 CATGCTTTATGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGA
* *
107340874 CATGGATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGC
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGA
*
107340926 CATGCATTAAGTAACTC
1 CATGCATTATGTAACTC
107340943 ATTGGTTCAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 25 0.42
51 12 0.20
52 23 0.38
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGA
Found at i:107341922 original size:18 final size:18
Alignment explanation
Indices: 107341899--107341933 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
107341889 TGGCCCATTA
*
107341899 CAGTAACAGTAAACAGTG
1 CAGTAACAATAAACAGTG
107341917 CAGTAACAATAAACAGT
1 CAGTAACAATAAACAGT
107341934 ATGAAAGTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
CAGTAACAATAAACAGTG
Found at i:107342330 original size:27 final size:27
Alignment explanation
Indices: 107342300--107342361 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
107342290 CGCATTTCAA
107342300 TCATTTTACCTCATAAGGGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* *
107342327 TCATTTTACCTCATGAGGGTAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
107342354 TCATTTTA
1 TCATTTTA
107342362 TCGACTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (27 bp):
TCATTTTACCTCATAAGGGCAAAACAG
Found at i:107348013 original size:14 final size:13
Alignment explanation
Indices: 107347985--107348025 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
107347975 CTGGCCCGCC
107347985 TATATTAATTTTT
1 TATATTAATTTTT
*
107347998 TATATTATTATTTT
1 TATATTAAT-TTTT
107348012 TATA-TAATTTTT
1 TATATTAATTTTT
107348024 TA
1 TA
107348026 AAAATGTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 6 0.24
13 11 0.44
14 8 0.32
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATTAATTTTT
Found at i:107355655 original size:21 final size:21
Alignment explanation
Indices: 107355629--107355672 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
107355619 ATGTCATGCA
107355629 TTATACTAGAG-ACAATATAGC
1 TTATACTAGAGCA-AATATAGC
107355650 TTATACTAGAGCAAATATAGC
1 TTATACTAGAGCAAATATAGC
107355671 TT
1 TT
107355673 TTGTAGTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (21 bp):
TTATACTAGAGCAAATATAGC
Found at i:107360527 original size:16 final size:17
Alignment explanation
Indices: 107360502--107360536 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
107360492 ATTATTATTA
*
107360502 TTTTTACTTTTTTTTTC
1 TTTTTACTTTTCTTTTC
107360519 TTTTT-CTTTTCTTTTC
1 TTTTTACTTTTCTTTTC
107360535 TT
1 TT
107360537 AAGAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTACTTTTCTTTTC
Found at i:107363024 original size:13 final size:13
Alignment explanation
Indices: 107363006--107363031 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107362996 ATCTCTTCAC
107363006 TTCTCTCTCATTT
1 TTCTCTCTCATTT
107363019 TTCTCTCTCATTT
1 TTCTCTCTCATTT
107363032 CCTTTCATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.62
Consensus pattern (13 bp):
TTCTCTCTCATTT
Found at i:107367285 original size:43 final size:41
Alignment explanation
Indices: 107367201--107367322 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 41
107367191 TACCATACCA
* **
107367201 ATGCCATATCCCAGATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CTAATCTCATATCG
* *
107367243 ATGCCAATAGCCCAGCTATGGTCTTACACTAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACTAA-TCTCATATCG
* * *
107367286 ATACCATATCTCAAATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACAC-TAATCTCA
107367323 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACTAATCTCATATCG
Found at i:107370839 original size:40 final size:40
Alignment explanation
Indices: 107370738--107370996 Score: 329
Period size: 40 Copynumber: 6.5 Consensus size: 40
107370728 CGAATGGTAT
* * * * * *
107370738 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
107370779 CTGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
107370819 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
107370859 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
107370899 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * * *
107370939 CCGGGCTAATTCCCGAAGGTAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
107370979 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
107370997 ACAATCGAGC
Statistics
Matches: 195, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
40 172 0.88
41 23 0.12
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:107371030 original size:80 final size:80
Alignment explanation
Indices: 107370772--107371022 Score: 234
Period size: 80 Copynumber: 3.1 Consensus size: 80
107370762 GTGCTAAGTG
* * * * *
107370772 ACTAAATCTGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAA
1 ACTAAATCCGGGCT-AATTCCCGAAGGTAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAA
* * * * *
107370836 GGCATTTGTGCGAGTT
65 GACAATCGAGCGAGTC
* * * * * * * *
107370852 ACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGCTAATTCCCGAAGGTAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
* * * * *
107370917 GCATTTGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
107370932 ACTAAATCCGGGCTAATTCCCGAAGGTAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGCTAATTCCCGAAGGTAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
107370997 ACAATCGAGCGAGTC
66 ACAATCGAGCGAGTC
* *
107371012 GCTATATCCGG
1 ACTAAATCCGG
107371023 TTAAATTCTG
Statistics
Matches: 148, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
80 147 0.99
81 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGCTAATTCCCGAAGGTAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:107378948 original size:40 final size:40
Alignment explanation
Indices: 107378847--107379025 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
107378837 CGAATGGTAT
* * * * *
107378847 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
107378888 CCAGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
107378928 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
107378968 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
107379008 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
107379026 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 93 0.80
41 23 0.20
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:107378994 original size:80 final size:81
Alignment explanation
Indices: 107378847--107379025 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
107378837 CGAATGGTAT
* * *
107378847 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAATCCAGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGGTCAATTCCCGAAGGCAATT
*
107378912 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * * *
107378928 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC-GGGCTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGGTC-AATTCCCGAAGGCAAT
* *
107378991 TGTGCGAATTACTATAA
65 TGTGCGAATTACCAAAA
*
107379008 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
107379026 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 3 0.04
80 57 0.67
81 25 0.29
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:107379060 original size:80 final size:80
Alignment explanation
Indices: 107378881--107379051 Score: 200
Period size: 80 Copynumber: 2.1 Consensus size: 80
107378871 GTGCTAAGTG
* * * *
107378881 ACTAAATCCAGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAA
1 ACTAAATCCGGGCT-AATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAA
* * * * *
107378945 GGCATTTGTGCGAGTT
65 GACAATCGAGCGAGTC
* * *
107378961 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
107379026 ACAATCGAGCGAGTC
66 ACAATCGAGCGAGTC
* *
107379041 GCTATATCCGG
1 ACTAAATCCGG
107379052 TTAAATTCCG
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 75 0.99
81 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:107388695 original size:20 final size:20
Alignment explanation
Indices: 107388670--107388707 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
107388660 ATACTTTATT
*
107388670 TTTTGTTAAGTATCGATAAA
1 TTTTGTTAAGTATAGATAAA
*
107388690 TTTTGTTGAGTATAGATA
1 TTTTGTTAAGTATAGATA
107388708 GATTCACAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (20 bp):
TTTTGTTAAGTATAGATAAA
Found at i:107401812 original size:24 final size:24
Alignment explanation
Indices: 107401765--107401886 Score: 102
Period size: 25 Copynumber: 4.9 Consensus size: 24
107401755 GCTTTATCAT
** * *
107401765 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCCTTTTTTG
107401790 ATAACTGGGGCAAAGCCTTTTTTG
1 ATAACTGGGGCAAAGCCTTTTTTG
* *
107401814 ATAAACTGGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCTTTTTTG
* * *
107401839 GTAAACTAGGGCAAAG-CTCTTTTCG
1 AT-AACTGGGGCAAAGCCT-TTTTTG
*
107401864 GTAAACTGGGGCAAAGCCTTTTT
1 AT-AACTGGGGCAAAGCCTTTTT
107401887 AGCACTACCT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
24 15 0.18
25 67 0.80
26 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCTTTTTTG
Found at i:107401820 original size:25 final size:25
Alignment explanation
Indices: 107401792--107401886 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
107401782 CTCTTTTAAT
*
107401792 AACTGGGGCAAAGCCTTTTTTGATA
1 AACTGGGGCAAAGCCTTTTTCGATA
* *
107401817 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCTTTTTCGATA
* *
107401842 AACTAGGGCAAAG-CTCTTTTCGGTA
1 AACTGGGGCAAAGCCT-TTTTCGATA
107401867 AACTGGGGCAAAGCCTTTTT
1 AACTGGGGCAAAGCCTTTTT
107401887 AGCACTACCT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
24 1 0.02
25 59 0.95
26 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCTTTTTCGATA
Found at i:107402122 original size:27 final size:27
Alignment explanation
Indices: 107402092--107402334 Score: 292
Period size: 27 Copynumber: 9.1 Consensus size: 27
107402082 GGGAACATGA
* * * * *
107402092 TAATTTTACCCCACATGGGTATCTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
107402119 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
107402146 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
107402173 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
107402200 TAATTCTACCCTACA-GGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
107402226 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
107402253 TAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * * *
107402280 TATTTCTGCCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
107402307 TAATTCCACCGTA-AAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
107402333 TA
1 TA
107402335 TTTTACAAAT
Statistics
Matches: 185, Mismatches: 30, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 39 0.21
27 146 0.79
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:107402244 original size:107 final size:107
Alignment explanation
Indices: 107402092--107402334 Score: 306
Period size: 107 Copynumber: 2.3 Consensus size: 107
107402082 GGGAACATGA
* * * * * * *
107402092 TAATTTTACCCCACATGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
* *
107402157 TACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGG
65 TACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAG
*
107402200 TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCT
1 TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* * * * * *
107402265 ATAGGGGTATTTTGGTATTTCTGCCCTACAAGGGTATTTCAG
66 ACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAG
* * *
107402307 TAATTCCACCGTAAAGGGTATTTCGGTA
1 TAATTCTACCCTACAGGGTATTTCGGTA
107402335 TTTTACAAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
107 103 0.89
108 13 0.11
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (107 bp):
TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAG
Found at i:107402431 original size:27 final size:27
Alignment explanation
Indices: 107402320--107402486 Score: 160
Period size: 27 Copynumber: 6.3 Consensus size: 27
107402310 TTCCACCGTA
*
107402320 AAGGGTATTTCGGT-ATTTTACAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
107402346 AAGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
107402372 TAGGGGTATTTTAGTAATTTTACAAACC
1 -AAGGGTATTTTGGTAATTTTACAAATC
**
107402400 AAGGGTATTTTGGTAATTTTACTGATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * ** *
107402427 GAGGGTACTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * **
107402454 AAAGGTA-TTTAGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
*
107402480 GAGGGTA
1 AAGGGTA
107402487 AAACGGTAAT
Statistics
Matches: 117, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 36 0.31
27 80 0.68
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:107402439 original size:81 final size:79
Alignment explanation
Indices: 107402320--107402472 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 79
107402310 TTCCACCGTA
* * **
107402320 AAGGGTATTTCGGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
1 AAGGGTATTTCGGTATTTTACAAATCAAGGGTACTTTGGTAATTTTACAAACCAAAGGTA-TTTA
107402385 GTAATTTTACAAACC
65 GTAATTTTACAAACC
* ** * **
107402400 AAGGGTATTTTGGTAATTTTACTGATCGAGGGTACTTTGGTAATTTTGTAAACCAAAGGTATTTA
1 AAGGGTATTTCGGT-ATTTTACAAATCAAGGGTACTTTGGTAATTTTACAAACCAAAGGTATTTA
107402465 GTAATTTT
65 GTAATTTT
107402473 GTAAATCGAG
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 25 0.40
81 37 0.60
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (79 bp):
AAGGGTATTTCGGTATTTTACAAATCAAGGGTACTTTGGTAATTTTACAAACCAAAGGTATTTAG
TAATTTTACAAACC
Found at i:107402504 original size:27 final size:27
Alignment explanation
Indices: 107402465--107402618 Score: 218
Period size: 27 Copynumber: 5.7 Consensus size: 27
107402455 AAGGTATTTA
* * *
107402465 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
107402492 GTAATTCTATAAATTGATGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
107402519 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
107402546 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
107402573 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
107402600 GTAATTCTATAAATTGAGG
1 GTAATTCTATAAATCGAGG
107402619 ATATTTGGGT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:107402539 original size:54 final size:54
Alignment explanation
Indices: 107402474--107402618 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
107402464 AGTAATTTTG
* *
107402474 TAAATCGAGGGTAAAACGGTAATTCTATAAATTGATGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGATAATTCTA
* * *
107402528 TAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGATAATTCTA
107402582 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGG
107402619 ATATTTGGGT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.31
Consensus pattern (54 bp):
TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGATAATTCTA
Found at i:107402659 original size:81 final size:81
Alignment explanation
Indices: 107402465--107402648 Score: 201
Period size: 81 Copynumber: 2.3 Consensus size: 81
107402455 AAGGTATTTA
* * * *
107402465 GTAATTTT-GTAAATCGAGGGTAAAACGGTAATTCTATAAATTGATGGTAAAATGATAATTCTAT
1 GTAATTTTAG-AAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTAT
*
107402529 AAATCGAGGGTAAAATG
65 AAATCGAGGATAAAATG
* * * * *
107402546 GTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTAGAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
* **
107402611 AATTGAGGAT-ATTTGG
66 AATCGAGGATAAAAT-G
* *
107402627 GTAGTTTTAGAAACCGTGGGTA
1 GTAATTTTAGAAACCGAGGGTA
107402649 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 2 0.02
81 84 0.98
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (81 bp):
GTAATTTTAGAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
AATCGAGGATAAAATG
Found at i:107405076 original size:24 final size:25
Alignment explanation
Indices: 107405049--107405100 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
107405039 GCCTAGCCTC
107405049 TTTTAAT-AACTCGAGCAAAGCCCT
1 TTTTAATAAACTCGAGCAAAGCCCT
* * *
107405073 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTCGAGCAAAGCCCT
107405098 TTT
1 TTT
107405101 CGGAAAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTCGAGCAAAGCCCT
Found at i:107405091 original size:25 final size:25
Alignment explanation
Indices: 107405063--107405125 Score: 101
Period size: 25 Copynumber: 2.5 Consensus size: 25
107405053 AATAACTCGA
*
107405063 GCAAAGCCCTTTT-TGATAAACTGGG
1 GCAAAGCCCTTTTCGGA-AAACTGGG
107405088 GCAAAGCCCTTTTCGGAAAACTGGG
1 GCAAAGCCCTTTTCGGAAAACTGGG
107405113 GCAAAGCCCTTTT
1 GCAAAGCCCTTTT
107405126 AGCACTTCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 34 0.94
26 2 0.06
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (25 bp):
GCAAAGCCCTTTTCGGAAAACTGGG
Found at i:107405362 original size:27 final size:27
Alignment explanation
Indices: 107405332--107405544 Score: 266
Period size: 27 Copynumber: 7.9 Consensus size: 27
107405322 GGAAAAATGA
* * * *
107405332 TAATTTTACCCCACATGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
107405359 TAATTCTATCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
107405386 TATTTCTACCCTACAAGGGTATTTCGT
1 TAATTCTACCCTACAGGGGTATTTCGG
* **
107405413 TAATT-TACTCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
107405439 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
107405466 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
107405493 TATTTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
107405520 TAATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
107405545 AATATTTTAC
Statistics
Matches: 161, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.14
27 139 0.86
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:107405479 original size:107 final size:108
Alignment explanation
Indices: 107405348--107405548 Score: 334
Period size: 107 Copynumber: 1.9 Consensus size: 108
107405338 TACCCCACAT
* * *
107405348 GGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-G
1 GGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
*
107405412 TTAATT-TACTCTACAGGGGTATTTCAATAATTCTACCTTACAG
66 -TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAG
*
107405455 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
1 GGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
107405520 TAATTCTACCCTACAGGGGTATTTCAATA
66 TAATTCTACCCTACAGGGGTATTTCAATA
107405549 TTTTACAAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
107 64 0.74
108 23 0.26
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (108 bp):
GGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAG
Found at i:107405564 original size:27 final size:27
Alignment explanation
Indices: 107405534--107405635 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
107405524 TCTACCCTAC
* *
107405534 AGGGGTATTTCAAT-ATTTTACAAATCA
1 AGGGGTATTTTAGTAATTTTACAAA-CA
* *
107405561 A-GGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTAGTAATTTTACAAACA
* *
107405587 AGGGGAATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAACA
*
107405614 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTAGTAATTTTAC
107405636 TGATCGAGGA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 11 0.17
27 53 0.83
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTACAAACA
Found at i:107405576 original size:107 final size:107
Alignment explanation
Indices: 107405348--107405577 Score: 322
Period size: 107 Copynumber: 2.1 Consensus size: 107
107405338 TACCCCACAT
* * *
107405348 GGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGT
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGT
* ** *
107405413 TAATTTACTCTACAGGGGTATTTCAATAATTCTACCTTACAG
66 TAATTTACCCTACAGGGGTATTTCAATAATTCTACAATACAA
*
107405455 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-G
*
107405520 -TAATTCTACCCTACAGGGGTATTTCAAT-ATTTTACAA-ATCAA
65 TTAATT-TACCCTACAGGGGTATTTCAATAATTCTACAATA-CAA
*
107405562 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
107405578 TTACAAACTA
Statistics
Matches: 109, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
106 1 0.01
107 86 0.79
108 22 0.20
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (107 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGT
TAATTTACCCTACAGGGGTATTTCAATAATTCTACAATACAA
Found at i:107405651 original size:54 final size:54
Alignment explanation
Indices: 107405548--107405687 Score: 149
Period size: 54 Copynumber: 2.6 Consensus size: 54
107405538 GTATTTCAAT
* *
107405548 ATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAGGGGAATTTT-AGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGAATTTTGA-TA
* ** * *
107405602 ATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGA-TCGAGGATATTTTGATT
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGA-ATTTTGATA
** * *
107405656 ATTTTGTAAACCAATGGTATTTTAGTAATTTT
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTT
107405688 GTAAATCGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
53 5 0.07
54 66 0.92
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGAATTTTGATA
Found at i:107405738 original size:54 final size:54
Alignment explanation
Indices: 107405679--107405833 Score: 193
Period size: 54 Copynumber: 2.9 Consensus size: 54
107405669 ATGGTATTTT
* * * *
107405679 AGTAATTTTGTAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAAC
* * * * *
107405733 GGTAATTCTATAAATCGATGATAAAACGATAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAAC
* * * *
107405787 AGTAATCCTGTAAATCGAGGGTGAAACGATAATTCTATAAATTGAGG
1 AGTAATTCTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGG
107405834 ATATTTGGGT
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 85 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAAC
Found at i:107405819 original size:27 final size:27
Alignment explanation
Indices: 107405689--107405833 Score: 166
Period size: 27 Copynumber: 5.4 Consensus size: 27
107405679 AGTAATTTTG
* * * *
107405689 TAAATCGAAGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACGATAATTCTA
*
107405716 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
* *
107405743 TAAATCGATGATAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
* * *
107405770 TAAATCGAGGGTAAAA-TAGTAATCCTG
1 TAAATCGAGGGTAAAACGA-TAATTCTA
*
107405797 TAAATCGAGGGTGAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
*
107405824 TAAATTGAGG
1 TAAATCGAGG
107405834 ATATTTGGGT
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTCTA
Found at i:107405854 original size:81 final size:81
Alignment explanation
Indices: 107405681--107405836 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
107405671 GGTATTTTAG
* * * * *
107405681 TAATTTTGTAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
1 TAATTTTATAAATCGAGGGTAAAATAGTAATCCTGTAAATCGAGGGTAAAACGATAATTCTATAA
*
107405746 ATCGATGATAAAACGA
66 ATCGAGGATAAAACGA
* *
107405762 TAATTCTATAAATCGAGGGTAAAATAGTAATCCTGTAAATCGAGGGTGAAACGATAATTCTATAA
1 TAATTTTATAAATCGAGGGTAAAATAGTAATCCTGTAAATCGAGGGTAAAACGATAATTCTATAA
*
107405827 ATTGAGGATA
66 ATCGAGGATA
107405837 TTTGGGTAGT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (81 bp):
TAATTTTATAAATCGAGGGTAAAATAGTAATCCTGTAAATCGAGGGTAAAACGATAATTCTATAA
ATCGAGGATAAAACGA
Found at i:107407773 original size:14 final size:15
Alignment explanation
Indices: 107407743--107407776 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
107407733 GTTGTATTAG
107407743 TAAAATAAATAATAA
1 TAAAATAAATAATAA
*
107407758 TAAAATAAGT-ATAA
1 TAAAATAAATAATAA
107407772 TAAAA
1 TAAAA
107407777 CATATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
TAAAATAAATAATAA
Found at i:107410320 original size:40 final size:40
Alignment explanation
Indices: 107410265--107410432 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
107410255 TGAATGATAC
* * *
107410265 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
107410305 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
107410345 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
107410385 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
107410425 CC-GGCTAA
1 CCGGGCTAA
107410433 ATTTCGAAGA
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 5 0.04
40 107 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:107413837 original size:19 final size:20
Alignment explanation
Indices: 107413813--107413851 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
107413803 GGGTGAGAAG
*
107413813 TAAAAA-TTTAGGGGGAAAA
1 TAAAAAGTTTAGGGAGAAAA
*
107413832 TAAAAAGTTTTGGGAGAAAA
1 TAAAAAGTTTAGGGAGAAAA
107413852 AAGTTTTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (20 bp):
TAAAAAGTTTAGGGAGAAAA
Found at i:107414275 original size:24 final size:24
Alignment explanation
Indices: 107414248--107414309 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
107414238 TATTCGAGTT
107414248 ATTCGAATTCGAAAACTCAACTCA
1 ATTCGAATTCGAAAACTCAACTCA
*
107414272 ATTCGAATTCGAAAACTCAACTCG
1 ATTCGAATTCGAAAACTCAACTCA
107414296 ATTCGAATTCGAAA
1 ATTCGAATTCGAAA
107414310 TTCGAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (24 bp):
ATTCGAATTCGAAAACTCAACTCA
Found at i:107414290 original size:19 final size:18
Alignment explanation
Indices: 107414266--107414302 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
107414256 TCGAAAACTC
*
107414266 AACTCAATTCGAATTCGAA
1 AACTCAACTCG-ATTCGAA
107414285 AACTCAACTCGATTCGAA
1 AACTCAACTCGATTCGAA
107414303 TTCGAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (18 bp):
AACTCAACTCGATTCGAA
Found at i:107417263 original size:47 final size:45
Alignment explanation
Indices: 107417190--107417549 Score: 235
Period size: 47 Copynumber: 7.7 Consensus size: 45
107417180 TGATTTGTGC
* *
107417190 GCCAGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCCACA-TATGAGA
* * * *
107417236 GCCAATGTAAGACCATGTCTGGGACATGGCATCAG-CATCCAGATGAGG
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCA--CATATGAGA
* * * *
107417284 GCTATTGTAAGACATGTCTAGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCCACA-TATGAGA
* * * * * *
107417330 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCAGC-CACATATGAGA
* * * * *
107417378 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAG-C-C-ACATATGAGA
* * * * * * *
107417425 GCCAATGTAAGACGTGTCT-GAGACATGCATCGGCTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTAG-GACATGCATCAGCCACATATG-AGA
* *
107417469 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGC-CAC--ATATGAGA
*
107417517 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATC
107417550 GACAATATAT
Statistics
Matches: 243, Mismatches: 50, Indels: 38
0.73 0.15 0.11
Matches are distributed among these distances:
43 4 0.02
44 29 0.12
45 2 0.01
46 40 0.16
47 85 0.35
48 60 0.25
49 18 0.07
50 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCAGCCACATATGAGA
Found at i:107417356 original size:94 final size:93
Alignment explanation
Indices: 107417193--107417550 Score: 417
Period size: 94 Copynumber: 3.8 Consensus size: 93
107417183 TTTGTGCGCC
* * * *
107417193 AGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAATGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCATACTATGAGAGCCAATGTAAGACCATGTCTGG
* * *
107417258 GACATGGCATCAGCATCCAGATGAGGGCT
66 GACATGGCATCGGCAT-AAGATGAGTGCT
* * *
107417287 ATTGTAAGACATGTCTAGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCATACTATGAGAGCCAATGTAAGACCATGTCTGG
107417352 GACATGGCATCGGCATAGAGATGAGTGCT
66 GACATGGCATCGGCATA-AGATGAGTGCT
* * *
107417381 AGTGTAAGACATGTTTGGGACATGCATCAGCC-TCGAC-A-GAGATAGCCAATGTAAGA-CGTGT
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCAT--ACTATGAG--AGCCAATGTAAGACCATGT
* *
107417442 CTGAGACAT-GCATCGGC-TAAGA-GTTGTGCT
62 CTGGGACATGGCATCGGCATAAGATG-AGTGCT
* *
107417472 AGTGTAAGACATGTCTAGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTAGGACATGCATCAG--C-CATACTATGAGAGCCAATGTAAGACCATGTC
107417536 TGGGACATGGCATCG
63 TGGGACATGGCATCG
107417551 ACAATATATC
Statistics
Matches: 227, Mismatches: 23, Indels: 28
0.82 0.08 0.10
Matches are distributed among these distances:
90 1 0.00
91 36 0.16
92 14 0.06
93 26 0.11
94 135 0.59
95 15 0.07
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCATACTATGAGAGCCAATGTAAGACCATGTCTGG
GACATGGCATCGGCATAAGATGAGTGCT
Found at i:107417443 original size:141 final size:140
Alignment explanation
Indices: 107417190--107417549 Score: 358
Period size: 141 Copynumber: 2.6 Consensus size: 140
107417180 TGATTTGTGC
* **
107417190 GCCAGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACAAGATGAGAGCCAATGTAAGACCATGTC
* * *
107417255 TGGGACATGGCATCAGCATCCAGATGAGGGCTATTGTAAGACATGTCT-AGGACATGCATCAGCC
66 TGGGACATGGCATCAGCATCCAGATGAGAGCCAATGTAAGACATGTCTGA-GACATGCATCAGCC
107417319 ATACTATGATA
130 ATACTATGATA
* * * * *
107417330 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATAGAGATGAGTGCTAGTGTAAGA-CAT
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCACA-AGATGAGAGCCAATGTAAGACCAT
* * * *
107417393 GTTTGGGACAT-GCATCAGCCTCGACAGA-GATAGCCAATGTAAGACGTGTCTGAGACATGCATC
63 GTCTGGGACATGGCATCAGCATC--CAGATGAGAGCCAATGTAAGACATGTCTGAGACATGCATC
* * * *
107417456 GGCTAAGAGT-TG-T-
126 AGC-CATACTATGATA
* * * * * *
107417469 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCACGCGTATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGC-CAC-AAGATGAGAGCCAATGTAAGACCATG
107417534 TCTGGGACATGGCATC
64 TCTGGGACATGGCATC
107417550 GACAATATAT
Statistics
Matches: 179, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
137 6 0.03
138 13 0.07
139 29 0.16
140 36 0.20
141 66 0.37
142 29 0.16
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (140 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACAAGATGAGAGCCAATGTAAGACCATGTC
TGGGACATGGCATCAGCATCCAGATGAGAGCCAATGTAAGACATGTCTGAGACATGCATCAGCCA
TACTATGATA
Found at i:107418549 original size:19 final size:19
Alignment explanation
Indices: 107418500--107418543 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
107418490 CGAGTTCGGG
107418500 ACACGGGCGTGTCCCTGGC
1 ACACGGGCGTGTCCCTGGC
107418519 ACACGGGCGTGTCCCTGGC
1 ACACGGGCGTGTCCCTGGC
107418538 ACACGG
1 ACACGG
107418544 TTGTGTGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.14, C:0.36, G:0.36, T:0.14
Consensus pattern (19 bp):
ACACGGGCGTGTCCCTGGC
Done.