Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 344 of 438
Found at i:107421612 original size:16 final size:15
Alignment explanation
Indices: 107421582--107421624 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
107421572 ATCGAGTTGG
*
107421582 GAAAATTATTTAATT
1 GAAAATTAATTAATT
107421597 GAAAAGTTAATTAATT
1 GAAAA-TTAATTAATT
107421613 -AAAATTAATTAA
1 GAAAATTAATTAA
107421625 ATAAATAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 8 0.31
15 9 0.35
16 9 0.35
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (15 bp):
GAAAATTAATTAATT
Found at i:107421622 original size:14 final size:14
Alignment explanation
Indices: 107421583--107421629 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
107421573 TCGAGTTGGG
*
107421583 AAAATTATTTAATT
1 AAAATTAATTAATT
107421597 GAAAAGTTAATTAATT
1 -AAAA-TTAATTAATT
*
107421613 AAAATTAATTAAAT
1 AAAATTAATTAATT
107421627 AAA
1 AAA
107421630 TAATGTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 12 0.41
15 8 0.28
16 9 0.31
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (14 bp):
AAAATTAATTAATT
Found at i:107426850 original size:22 final size:22
Alignment explanation
Indices: 107426822--107426864 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
107426812 TCAACTAATT
107426822 CGATACTTTTTCCTTTCCCCGG
1 CGATACTTTTTCCTTTCCCCGG
107426844 CGATACTTTTTCCTTTCCCCG
1 CGATACTTTTTCCTTTCCCCG
107426865 ATCTAAATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.37, G:0.12, T:0.42
Consensus pattern (22 bp):
CGATACTTTTTCCTTTCCCCGG
Found at i:107431834 original size:44 final size:45
Alignment explanation
Indices: 107431775--107431886 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 45
107431765 GCTATAATAT
* *
107431775 TATCGCACACTTAGTGCCATTTCATTAAACTA-AAC-TTATATCGA
1 TATCGCACACATAGTGCCATTT-ATTAAACCATAACGTTATATCGA
* * **
107431819 TATCGCACACATAGTGCCATTTATTTAGCCATCGCTGTTATATCGA
1 TATCGCACACATAGTGCCATTTATTAAACCATAAC-GTTATATCGA
107431865 TATCGCACACATAGTGCCATTT
1 TATCGCACACATAGTGCCATTT
107431887 TTTTAGCCAT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
43 6 0.10
44 22 0.37
46 31 0.53
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (45 bp):
TATCGCACACATAGTGCCATTTATTAAACCATAACGTTATATCGA
Found at i:107431872 original size:46 final size:46
Alignment explanation
Indices: 107431810--107431907 Score: 187
Period size: 46 Copynumber: 2.1 Consensus size: 46
107431800 TAAACTAAAC
107431810 TTATATCGATATCGCACACATAGTGCCATTTATTTAGCCATCGCTG
1 TTATATCGATATCGCACACATAGTGCCATTTATTTAGCCATCGCTG
*
107431856 TTATATCGATATCGCACACATAGTGCCATTTTTTTAGCCATCGCTG
1 TTATATCGATATCGCACACATAGTGCCATTTATTTAGCCATCGCTG
107431902 TTATAT
1 TTATAT
107431908 TCTCGCACAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (46 bp):
TTATATCGATATCGCACACATAGTGCCATTTATTTAGCCATCGCTG
Found at i:107442280 original size:83 final size:83
Alignment explanation
Indices: 107442141--107442322 Score: 346
Period size: 83 Copynumber: 2.2 Consensus size: 83
107442131 TAAGAAGGAT
107442141 ACCCAACATTGTTTCTTCCTTTCTCTGTACAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
1 ACCCAACATTGTTTCTTCCTTTCTCTGTACAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
107442206 TGATGCTTCTCTGTACAA
66 TGATGCTTCTCTGTACAA
107442224 ACCCAACATTGTTTCTTCCTTTCTCTGTACAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
1 ACCCAACATTGTTTCTTCCTTTCTCTGTACAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
*
107442289 TGTTGCTTCTCTGTACAA
66 TGATGCTTCTCTGTACAA
*
107442307 ACCCAGCATTGTTTCT
1 ACCCAACATTGTTTCT
107442323 CCCTCTTTCC
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 97 1.00
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (83 bp):
ACCCAACATTGTTTCTTCCTTTCTCTGTACAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
TGATGCTTCTCTGTACAA
Found at i:107451643 original size:57 final size:56
Alignment explanation
Indices: 107451582--107451712 Score: 163
Period size: 57 Copynumber: 2.3 Consensus size: 56
107451572 TTCAGGTCAT
* * * * *
107451582 TTTCATTTTTTCATTTCCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATG
1 TTTCATTTCTCCATTTCCAATTCCATTTTGGAGAAAACCACAATCATTTCCAAATG
* **
107451638 ATTTCATTTCTCCATTTTCAATTCCATTTTGGAGAAAACCTTAATCATTTCCAAATG
1 -TTTCATTTCTCCATTTCCAATTCCATTTTGGAGAAAACCACAATCATTTCCAAATG
107451695 TTTCCTATTTCTCCATTT
1 TTT-C-ATTTCTCCATTT
107451713 AACCATTTCT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
56 3 0.05
57 49 0.77
58 12 0.19
ACGTcount: A:0.26, C:0.21, G:0.06, T:0.47
Consensus pattern (56 bp):
TTTCATTTCTCCATTTCCAATTCCATTTTGGAGAAAACCACAATCATTTCCAAATG
Found at i:107454171 original size:16 final size:16
Alignment explanation
Indices: 107454145--107454189 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
107454135 TATGAATCGG
*
107454145 CAAAA-GCCGAAATAC
1 CAAAATGCCGAAAAAC
*
107454160 CAAAATGCCGAAAAAT
1 CAAAATGCCGAAAAAC
107454176 CAAAATGCC-AAAAA
1 CAAAATGCCGAAAAA
107454190 GTCGAAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.58, C:0.22, G:0.11, T:0.09
Consensus pattern (16 bp):
CAAAATGCCGAAAAAC
Found at i:107454496 original size:15 final size:15
Alignment explanation
Indices: 107454476--107454505 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
107454466 ATACAGGTGA
107454476 TTGGGCCTAATGGGC
1 TTGGGCCTAATGGGC
*
107454491 TTGGGCTTAATGGGC
1 TTGGGCCTAATGGGC
107454506 CAGATACAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.17, G:0.40, T:0.30
Consensus pattern (15 bp):
TTGGGCCTAATGGGC
Found at i:107455609 original size:17 final size:18
Alignment explanation
Indices: 107455576--107455609 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
107455566 TTTTAAGAAG
*
107455576 GGTTTTCAATGAAAACAA
1 GGTTTTAAATGAAAACAA
107455594 GGTTTTAAAT-AAAACA
1 GGTTTTAAATGAAAACA
107455610 CTTCAATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (18 bp):
GGTTTTAAATGAAAACAA
Found at i:107463099 original size:43 final size:43
Alignment explanation
Indices: 107463024--107463147 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
107463014 TCTAAACTCA
* **
107463024 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
107463066 TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
107463109 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
107463148 ATATTATTCA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 12 0.16
43 62 0.84
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:107466862 original size:40 final size:40
Alignment explanation
Indices: 107466780--107466963 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
107466770 TATTCGAATG
* * * * * *
107466780 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATTCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
*
107466820 ATATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATTCGGACTAAGACCCGAAGGCATTTGTGCGAG-TGACT
* * * *
107466860 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATTCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * * *
107466900 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATTCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
*
107466940 ATA-TCTGGGCTAAGACCCGAAGGC
1 ATATTC-GGACTAAGACCCGAAGGC
107466964 CTTATGCGAG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.02
40 117 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATTCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:107466920 original size:80 final size:79
Alignment explanation
Indices: 107466780--107466999 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 79
107466770 TATTCGAATG
* * * * *
107466780 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATTCGGACTAAGAT-CCGAAGGC
1 ATATTCGGGCTAAGACCCGAAGGC-TTTATGCTAGTGATTATATCCGGGCTAAG-TCCCGAAGGC
* *
107466844 ATTTGTGCGAGTTG-CT
64 ATTTATGCGAG-TGACC
* *
107466860 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATTCGGGCTAAGACCCGAAGGC-TTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
*
107466925 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * * *
107466940 ATA-TCTGGGCTAAGACCCGAAGGCCTTATGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATTC-GGGCTAAGACCCGAAGGCTTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAG
107467000 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
78 14 0.12
79 21 0.17
80 85 0.71
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (79 bp):
ATATTCGGGCTAAGACCCGAAGGCTTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:107479280 original size:40 final size:40
Alignment explanation
Indices: 107479231--107479317 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
107479221 GTGTTGTACA
* *
107479231 TAGCTGAAGCTAT-CTCAAATCGCACACTAAGTGCCAAATT
1 TAGCCGAAGCTATAC-CAAACCGCACACTAAGTGCCAAATT
* * *
107479271 TAGCCGAAGCTATACCGAACCGCACACTCAGTGCCATATT
1 TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
107479311 TAGCCGA
1 TAGCCGA
107479318 TATGTCATCA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (40 bp):
TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
Found at i:107506827 original size:8 final size:8
Alignment explanation
Indices: 107506816--107506866 Score: 75
Period size: 8 Copynumber: 6.4 Consensus size: 8
107506806 TGTTTTATTA
107506816 TATTATAT
1 TATTATAT
107506824 TATTATAT
1 TATTATAT
*
107506832 TAATATAT
1 TATTATAT
107506840 TATTATAT
1 TATTATAT
*
107506848 TAATATAT
1 TATTATAT
*
107506856 TATTACAT
1 TATTATAT
107506864 TAT
1 TAT
107506867 ATACTTAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (8 bp):
TATTATAT
Found at i:107506828 original size:13 final size:13
Alignment explanation
Indices: 107506810--107506858 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
107506800 ATTTTATGTT
107506810 TTATTATATTATA
1 TTATTATATTATA
107506823 TTATTATATTA-A
1 TTATTATATTATA
107506835 -TA-TATTATTATA
1 TTATTA-TATTATA
*
107506847 TTAATATATTAT
1 TTATTATATTAT
107506859 TACATTATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.06
11 7 0.22
12 2 0.06
13 19 0.59
14 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:107506838 original size:16 final size:16
Alignment explanation
Indices: 107506819--107506869 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
107506809 TTTATTATAT
107506819 TATATTATTATATTAA
1 TATATTATTATATTAA
107506835 TATATTATTATATTAA
1 TATATTATTATATTAA
*
107506851 TATATTATTACATT-A
1 TATATTATTATATTAA
107506866 TATA
1 TATA
107506870 CTTAAATACT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 5 0.15
16 29 0.85
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
TATATTATTATATTAA
Found at i:107506847 original size:24 final size:24
Alignment explanation
Indices: 107506816--107506874 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
107506806 TGTTTTATTA
* *
107506816 TATTATATTATTATATTAATATAT
1 TATTATATTAATATATTAATACAT
*
107506840 TATTATATTAATATATTATTACAT
1 TATTATATTAATATATTAATACAT
107506864 TA-TATACTTAA
1 TATTATA-TTAA
107506875 ATACTAAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 4 0.13
24 27 0.87
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (24 bp):
TATTATATTAATATATTAATACAT
Found at i:107514248 original size:25 final size:24
Alignment explanation
Indices: 107514220--107514290 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 24
107514210 TTTTCCTTTT
107514220 CTTTTTCTATTCTTCTTTCTTTATC
1 CTTTTTCTATT-TTCTTTCTTTATC
**
107514245 CTTTTTC-A-TTTCTTTCTCTGCTC
1 CTTTTTCTATTTTCTTTCT-TTATC
*
107514268 CTTTTTCTATTTTGTTTCTTTAT
1 CTTTTTCTATTTTCTTTCTTTAT
107514291 TTTCTTTCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
22 8 0.21
23 11 0.29
24 4 0.11
25 15 0.39
ACGTcount: A:0.07, C:0.23, G:0.03, T:0.68
Consensus pattern (24 bp):
CTTTTTCTATTTTCTTTCTTTATC
Found at i:107514293 original size:13 final size:14
Alignment explanation
Indices: 107514275--107514307 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
107514265 CTCCTTTTTC
*
107514275 TATTTTGTTTC-TT
1 TATTTTCTTTCATT
107514288 TATTTTCTTTCATT
1 TATTTTCTTTCATT
107514302 TATTTT
1 TATTTT
107514308 ATGTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.12, C:0.09, G:0.03, T:0.76
Consensus pattern (14 bp):
TATTTTCTTTCATT
Found at i:107514330 original size:8 final size:8
Alignment explanation
Indices: 107514319--107514358 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
107514309 TGTTTTATTA
107514319 TATTATAT
1 TATTATAT
107514327 TATTATAT
1 TATTATAT
*
107514335 TAATATAT
1 TATTATAT
107514343 TATTATAT
1 TATTATAT
107514351 TA-TATAT
1 TATTATAT
107514358 T
1 T
107514359 TAAATACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
7 6 0.20
8 24 0.80
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:107514331 original size:13 final size:13
Alignment explanation
Indices: 107514313--107514355 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 13
107514303 ATTTTATGTT
107514313 TTATTATATTATA
1 TTATTATATTATA
107514326 TTATTATATTAATATA
1 TTATTATA-T--TATA
107514342 TTATTATATTATA
1 TTATTATATTATA
107514355 T
1 T
107514356 ATTTAAATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 13 0.48
14 1 0.04
15 1 0.04
16 12 0.44
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:107514341 original size:16 final size:15
Alignment explanation
Indices: 107514313--107514358 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
107514303 ATTTTATGTT
107514313 TTATTATA-T-TATA
1 TTATTATATTATATA
107514326 TTATTATATTAATATA
1 TTATTATATT-ATATA
107514342 TTATTATATTATATA
1 TTATTATATTATATA
107514357 TT
1 TT
107514359 TAAATACTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.27
14 1 0.03
15 7 0.23
16 14 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTATTATATTATATA
Found at i:107515944 original size:8 final size:8
Alignment explanation
Indices: 107515922--107515954 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
107515912 TTATTTGTAG
107515922 TTTTT-TT
1 TTTTTATT
*
107515929 TTTATATT
1 TTTTTATT
107515937 TTTTTATT
1 TTTTTATT
107515945 TTTTTATT
1 TTTTTATT
107515953 TT
1 TT
107515955 ATTGCATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 4 0.17
8 19 0.83
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTATT
Found at i:107519444 original size:46 final size:46
Alignment explanation
Indices: 107519393--107519487 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 46
107519383 CCAGTCAGTC
* ***
107519393 ACATCTATGCCTCTATCTTCTGGAGTCATCCGCTTTGATGCCCAAG
1 ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
107519439 ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
1 ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
107519485 ACA
1 ACA
107519488 AAACATCTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (46 bp):
ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
Found at i:107526678 original size:40 final size:40
Alignment explanation
Indices: 107526633--107526799 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107526623 CGGAATATAA
107526633 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
107526673 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
107526713 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
107526753 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107526792 CCGGATAT
1 CCGGATAT
107526800 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107526783 original size:80 final size:79
Alignment explanation
Indices: 107526633--107526799 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
107526623 CGGAATATAA
* *
107526633 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
107526698 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
107526713 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
107526775 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
107526792 CCGGATAT
1 CCGGATAT
107526800 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:107527646 original size:17 final size:19
Alignment explanation
Indices: 107527623--107527668 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
107527613 AAGAAGCATG
107527623 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
107527641 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
107527659 AATCATGCTC
1 AATCATGCTC
107527669 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:107534673 original size:40 final size:40
Alignment explanation
Indices: 107534628--107534794 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107534618 CGGAATATAA
107534628 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
107534668 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
107534708 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
107534748 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107534787 CCGGATAT
1 CCGGATAT
107534795 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107534778 original size:80 final size:79
Alignment explanation
Indices: 107534628--107534794 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
107534618 CGGAATATAA
* *
107534628 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
107534693 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
107534708 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
107534770 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
107534787 CCGGATAT
1 CCGGATAT
107534795 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:107535643 original size:17 final size:19
Alignment explanation
Indices: 107535620--107535665 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
107535610 AAGAAGCATG
107535620 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
107535638 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
107535656 AATCATGCTC
1 AATCATGCTC
107535666 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:107539143 original size:39 final size:39
Alignment explanation
Indices: 107539086--107539266 Score: 317
Period size: 39 Copynumber: 4.6 Consensus size: 39
107539076 AACACAAATG
107539086 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
*
107539125 CCTTCGGGACTTATCCCGGATATAACACCAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
* *
107539164 CCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
* *
107539203 CCTTCGGGACTTAGCCCGGACATAACACCAGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
107539242 CCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAA
107539267 ATCTCACACA
Statistics
Matches: 135, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 135 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
Found at i:107539277 original size:78 final size:77
Alignment explanation
Indices: 107539082--107539298 Score: 321
Period size: 78 Copynumber: 2.8 Consensus size: 77
107539072 TTCCAACACA
* * *
107539082 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACCTTCGGGACTTATCCCGGATA
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTTAGCCCGGACA
107539147 TAACACCAGCACG
65 TAACACCAGCACG
*
107539160 AATACCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGACA
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTTAGCCCGGACA
107539225 TAACACCAGCACG
65 TAACACCAGCACG
* * *
107539238 AATGCCTTCGGGACTTAGCCCGGATATAA-ATCTCA-CACAAGGCCTACGGGTCTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGGATATAACA-C-CAGCACAATGCCTTCGGGACTTAGCCCGG
107539299 TTATAATCCT
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 21 0.16
78 105 0.82
79 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.19
Consensus pattern (77 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAATGCCTTCGGGACTTAGCCCGGACAT
AACACCAGCACG
Found at i:107540949 original size:6 final size:6
Alignment explanation
Indices: 107540938--107540971 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
107540928 CAATAACATA
107540938 TATAAT TATAAT TATAAT TATAA- TAT-AT TATAAT
1 TATAAT TATAAT TATAAT TATAAT TATAAT TATAAT
107540972 ACAAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 6 0.23
6 19 0.73
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TATAAT
Found at i:107544235 original size:18 final size:18
Alignment explanation
Indices: 107544212--107544248 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
107544202 CAAGCTCTTG
107544212 TTCGGATACTTTGCTGTC
1 TTCGGATACTTTGCTGTC
107544230 TTCGGATACTTTGCTGTC
1 TTCGGATACTTTGCTGTC
107544248 T
1 T
107544249 AACACATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.46
Consensus pattern (18 bp):
TTCGGATACTTTGCTGTC
Found at i:107547199 original size:39 final size:39
Alignment explanation
Indices: 107547149--107547442 Score: 420
Period size: 39 Copynumber: 7.6 Consensus size: 39
107547139 AACACAAATA
* * *
107547149 CCTTCAGGACTTAGCCCGGATATAACACTAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
*
107547188 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
* *
107547227 CCTTCGGGACTTAGCCCGGATATAACACCAACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
107547266 CCTTCGGGACTTAG-CCGGATATAACACCAGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
* *
107547304 CCTTCGGGACTTAGCCCGGACATAACACCAACACGAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
107547343 CCTTCGGGACTTAGCCC-GA-ATAACACCAGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
*
107547380 CCTTCGGGACTTAGCCCGGATATAA-ATCTCA-CAC-AAGG
1 CCTTCGGGACTTAGCCCGGATATAACA-C-CAGCACGAATG
* * *
107547418 CCTACGGGTCTTAGCCCGGTTATAA
1 CCTTCGGGACTTAGCCCGGATATAA
107547443 TCCTCAATTA
Statistics
Matches: 236, Mismatches: 14, Indels: 11
0.90 0.05 0.04
Matches are distributed among these distances:
37 34 0.14
38 66 0.28
39 134 0.57
40 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
Found at i:107547318 original size:77 final size:77
Alignment explanation
Indices: 107547149--107547404 Score: 424
Period size: 77 Copynumber: 3.3 Consensus size: 77
107547139 AACACAAATA
* * * *
107547149 CCTTCAGGACTTAGCCCGGATATAACACTAGCACGAATACCTTCGGGACTTAGCCCGGATATAAC
1 CCTTCGGGACTTAGCCCGGATATAACACCAACACGAATGCCTTCGGGACTTAG-CCGGATATAAC
*
107547214 ACCAGCACGAATA
65 ACCAGCACGAATG
*
107547227 CCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTTAGCCGGATATAACA
1 CCTTCGGGACTTAGCCCGGATATAACACCAACACGAATGCCTTCGGGACTTAGCCGGATATAACA
107547292 CCAGCACGAATG
66 CCAGCACGAATG
* *
107547304 CCTTCGGGACTTAGCCCGGACATAACACCAACACGAATGCCTTCGGGACTTAGCCCGA-ATAACA
1 CCTTCGGGACTTAGCCCGGATATAACACCAACACGAATGCCTTCGGGACTTAGCCGGATATAACA
107547368 CCAGCACGAATG
66 CCAGCACGAATG
107547380 CCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAA
107547405 ATCTCACACA
Statistics
Matches: 168, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
76 42 0.25
77 78 0.46
78 48 0.29
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (77 bp):
CCTTCGGGACTTAGCCCGGATATAACACCAACACGAATGCCTTCGGGACTTAGCCGGATATAACA
CCAGCACGAATG
Found at i:107547347 original size:116 final size:115
Alignment explanation
Indices: 107547137--107547404 Score: 430
Period size: 116 Copynumber: 2.3 Consensus size: 115
107547127 TTACACATTT
* * *
107547137 CCAACACAAATACCTTCAGGACTTAGCCCGGATATAACACTAGCACGAATACCTTCGGGACTTAG
1 CCAACACAAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACCTTCGGGACTTAG
* *
107547202 CCCGGATATAACACCAGCACGAATACCTTCGGGACTTAGCCCGGATATAACA
66 CCCGGACATAACACCAACACGAATACCTTCGGGACTTAGCCC-GA-ATAACA
*
107547254 CCAACACAAATGCCTTCGGGACTTAG-CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
1 CCAACACAAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACCTTCGGGACTTAG
*
107547318 CCCGGACATAACACCAACACGAATGCCTTCGGGACTTAGCCCGAATAACA
66 CCCGGACATAACACCAACACGAATACCTTCGGGACTTAGCCCGAATAACA
* *
107547368 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCAACACAAATGCCTTCGGGACTTAGCCCGGATATAA
107547405 ATCTCACACA
Statistics
Matches: 141, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
114 30 0.21
115 12 0.09
116 75 0.53
117 24 0.17
ACGTcount: A:0.32, C:0.31, G:0.20, T:0.18
Consensus pattern (115 bp):
CCAACACAAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACCTTCGGGACTTAG
CCCGGACATAACACCAACACGAATACCTTCGGGACTTAGCCCGAATAACA
Found at i:107550187 original size:21 final size:21
Alignment explanation
Indices: 107550161--107550212 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
107550151 TGCAGGGCAC
* **
107550161 ACACGCTCGTGTGGTCCAAAG
1 ACACGCCCGTGTGACCCAAAG
*
107550182 ACACGCCCGTGTGACCCTAAG
1 ACACGCCCGTGTGACCCAAAG
107550203 ACACGCCCGT
1 ACACGCCCGT
107550213 ACTGCAGGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.37, G:0.25, T:0.15
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAAG
Found at i:107555844 original size:19 final size:20
Alignment explanation
Indices: 107555813--107555851 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
107555803 ATAAATTTGA
*
107555813 TTATTTAAAAAATAATAATT
1 TTATTTAAAAAATAAAAATT
107555833 TTATTT-AAAAATAAAAATT
1 TTATTTAAAAAATAAAAATT
107555852 AACATGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTAAAAAATAAAAATT
Found at i:107557442 original size:16 final size:17
Alignment explanation
Indices: 107557421--107557460 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
107557411 AATCAAGATG
107557421 AACATAAACCATAA-TC-
1 AACATAAACCA-AATTCA
107557437 AACAT-AACCAAATTCA
1 AACATAAACCAAATTCA
107557453 AACATAAA
1 AACATAAA
107557461 AGTTAAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 7 0.33
16 10 0.48
17 2 0.10
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (17 bp):
AACATAAACCAAATTCA
Found at i:107560261 original size:14 final size:14
Alignment explanation
Indices: 107560242--107560268 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107560232 AATATATAAT
107560242 ATATTAAAATTTGA
1 ATATTAAAATTTGA
107560256 ATATTAAAATTTG
1 ATATTAAAATTTG
107560269 TATTAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
ATATTAAAATTTGA
Found at i:107560274 original size:12 final size:13
Alignment explanation
Indices: 107560242--107560275 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
107560232 AATATATAAT
107560242 ATATTAAAATTTG
1 ATATTAAAATTTG
107560255 AATATTAAAATTTG
1 -ATATTAAAATTTG
107560269 -TATTAAA
1 ATATTAAA
107560276 TTATTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.35
14 13 0.65
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (13 bp):
ATATTAAAATTTG
Found at i:107562047 original size:12 final size:12
Alignment explanation
Indices: 107562030--107562054 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
107562020 ACTCATATTT
107562030 TATTATTATCTA
1 TATTATTATCTA
107562042 TATTATTATCTA
1 TATTATTATCTA
107562054 T
1 T
107562055 TTTAAACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTATTATCTA
Found at i:107568335 original size:18 final size:20
Alignment explanation
Indices: 107568292--107568335 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
107568282 ACACTGGTTG
107568292 TACCTAAAAGACAAAACAAA
1 TACCTAAAAGACAAAACAAA
107568312 TA-CTAAAA-ACAAGAA-AAA
1 TACCTAAAAGACAA-AACAAA
107568330 -ACCTAA
1 TACCTAA
107568336 GAACTCATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.05
18 11 0.50
19 8 0.36
20 2 0.09
ACGTcount: A:0.66, C:0.18, G:0.05, T:0.11
Consensus pattern (20 bp):
TACCTAAAAGACAAAACAAA
Found at i:107572690 original size:27 final size:27
Alignment explanation
Indices: 107572649--107572701 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
107572639 GTCAAGGTGA
*
107572649 TTAACCATTTGCTCACTAAACTATGAC
1 TTAACCATTTGCTCACTAAACCATGAC
* * *
107572676 TTAACCTTTTTCTCATTAAACCATGA
1 TTAACCATTTGCTCACTAAACCATGA
107572702 TCATTTTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (27 bp):
TTAACCATTTGCTCACTAAACCATGAC
Found at i:107574001 original size:123 final size:123
Alignment explanation
Indices: 107573782--107574027 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
107573772 ATTGTGGTGA
*
107573782 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGGATATTCAATTTGTA
1 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGGATATTCAATTAGTA
107573847 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
66 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
107573905 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGGATATTCAATTAGTA
1 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGGATATTCAATTAGTA
107573970 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
66 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
107574028 TTCTTACTAG
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (123 bp):
GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGGATATTCAATTAGTA
AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
Found at i:107591911 original size:87 final size:87
Alignment explanation
Indices: 107591806--107591979 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
107591796 AGTCAAGTCG
107591806 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
1 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
107591871 AGTAAACGAAGTATAAAATTAT
66 AGTAAACGAAGTATAAAATTAT
107591893 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
1 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
107591958 AGTAAACGAAGTATAAAATTAT
66 AGTAAACGAAGTATAAAATTAT
107591980 TTAACTACAT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (87 bp):
AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
AGTAAACGAAGTATAAAATTAT
Found at i:107592073 original size:21 final size:21
Alignment explanation
Indices: 107592047--107592088 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
107592037 CAAAACAACG
*
107592047 TGGTTTTGCCTTTTAACTTTA
1 TGGTTTTGACTTTTAACTTTA
107592068 TGGTTTTGACTTTTAACTTTA
1 TGGTTTTGACTTTTAACTTTA
107592089 GAAAAGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.12, G:0.14, T:0.57
Consensus pattern (21 bp):
TGGTTTTGACTTTTAACTTTA
Found at i:107599649 original size:29 final size:28
Alignment explanation
Indices: 107599593--107599649 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
107599583 ATTATAGATT
*
107599593 GAGAAAAACAAAGTTCGGACCTAGATCG
1 GAGAAAAACAAAGTTCGGACCTAAATCG
*
107599621 GAGAAAGAACAAAGTTGTGGA-CTAAATCG
1 GAGAAA-AACAAAGTT-CGGACCTAAATCG
107599650 AATTAGTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 16 0.64
30 3 0.12
ACGTcount: A:0.44, C:0.14, G:0.26, T:0.16
Consensus pattern (28 bp):
GAGAAAAACAAAGTTCGGACCTAAATCG
Found at i:107599900 original size:42 final size:42
Alignment explanation
Indices: 107599854--107599999 Score: 134
Period size: 42 Copynumber: 3.5 Consensus size: 42
107599844 ATGATTTTAC
* * * *
107599854 GTGTAAGAGCATATTTGGGATATGGCATCGTTATGAGATTTT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATTTT
* *
107599896 GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGA-ATT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATTTT
* * * * * *
107599937 ATGTAAGACCATAACTGAG-CTATTGGCATCGATATGTGATCTC
1 GTGTAAGACCATATCTGGGAC-A-TGGCATCGATATGAGATTTT
* *
107599980 ATGTAAGACTATATCTGGGA
1 GTGTAAGACCATATCTGGGA
107600000 TATGACATTG
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
40 1 0.01
41 18 0.21
42 48 0.57
43 17 0.20
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATTTT
Found at i:107608091 original size:40 final size:39
Alignment explanation
Indices: 107608046--107608253 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
107608036 CGGAATACAA
*
107608046 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
107608086 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
107608126 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
107608166 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
107608206 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
107608246 CCGGATAT
1 CCGGATAT
107608254 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:107608186 original size:80 final size:81
Alignment explanation
Indices: 107608046--107608251 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
107608036 CGGAATACAA
* * *
107608046 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
107608110 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
107608126 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
107608189 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
107608206 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
107608252 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:107611161 original size:46 final size:44
Alignment explanation
Indices: 107611050--107611269 Score: 151
Period size: 46 Copynumber: 4.8 Consensus size: 44
107611040 GTATATTTGT
107611050 GCCGATGCCATGTCCCAGACATAGTCTTACACT-GACACATATCGTA
1 GCCGATG-CATGTCCCAGACATA-TCTTACACTAG-CACATATCGTA
*
107611096 GCCGATGCATGTCCCAGACATATCTTACACTAGCTTACATCTCGT-
1 GCCGATGCATGTCCCAGACATATCTTACACTAGC--ACATATCGTA
* * * * * *
107611141 GACTGATGCATGTCCTAGACATGTCTTACATTAGCAC-TCGTCTTA
1 G-CCGATGCATGTCCCAGACATATCTTACACTAGCACAT-ATCGTA
* * * * *
107611186 TTGCCGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 --GCCGAT-GCATGTCCCAGACAT-ATCTTACACTAG--CACAT-ATCGTA
* * *
107611236 GCTGATGCATGTCCCAGAAATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATATCTTACACTAGC
107611270 TCACACAAGT
Statistics
Matches: 140, Mismatches: 21, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 16 0.11
45 17 0.12
46 59 0.42
47 27 0.19
48 15 0.11
50 3 0.02
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATATCTTACACTAGCACATATCGTA
Found at i:107613288 original size:19 final size:19
Alignment explanation
Indices: 107613251--107613288 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
107613241 CAACTCAGAA
*
107613251 TTGCACACGGTTTGAGCAC
1 TTGCACACGGTGTGAGCAC
107613270 TTGCACACAGGTGTG-GCAC
1 TTGCACAC-GGTGTGAGCAC
107613289 AGGTCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (19 bp):
TTGCACACGGTGTGAGCAC
Found at i:107619329 original size:40 final size:40
Alignment explanation
Indices: 107619230--107619408 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
107619220 CGAATGGTAT
* * * *
107619230 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
107619271 CCGGG-TCAATTCCTGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
107619311 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
107619351 CCGGGCTAATTCCCGAAGGCAATTGTACGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
107619391 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
107619409 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 92 0.79
41 24 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:107619393 original size:80 final size:81
Alignment explanation
Indices: 107619230--107619408 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
107619220 CGAATGGTAT
* * *
107619230 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
107619295 GTGCGAGTTACCAAAA
66 GTACGAATTACCAAAA
* * *
107619311 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
107619374 TGTACGAATTACTATAA
65 TGTACGAATTACCAAAA
*
107619391 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
107619409 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 58 0.68
81 26 0.31
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTACGAATTACCAAAA
Found at i:107619433 original size:80 final size:80
Alignment explanation
Indices: 107619264--107619434 Score: 191
Period size: 80 Copynumber: 2.1 Consensus size: 80
107619254 GTGCTAAGTG
* * * * *
107619264 ACTAAATCCGGGTCAATTCCTGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTACGAATTACCAAAACCGGGCTAAGTCCCGAAG
* * * * *
107619329 GCATTTGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
107619344 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTACGAATTACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTACGAATTACCAAAACCGGGCTAAGTCCCGAA
107619408 GACAATCGAGCGAGTC
65 GACAATCGAGCGAGTC
* *
107619424 GCTATATCCGG
1 ACTAAATCCGG
107619435 TTAAATTCTG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTACGAATTACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:107620274 original size:25 final size:25
Alignment explanation
Indices: 107620240--107620290 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
107620230 AAATTATGTA
107620240 AATGAACCTTGATGAATCTACTTTC
1 AATGAACCTTGATGAATCTACTTTC
107620265 AATGAACCTTGATGAATCTACTTTC
1 AATGAACCTTGATGAATCTACTTTC
107620290 A
1 A
107620291 TATGGAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (25 bp):
AATGAACCTTGATGAATCTACTTTC
Found at i:107626759 original size:48 final size:48
Alignment explanation
Indices: 107626700--107626795 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
107626690 GAAAAGTCCC
** *
107626700 TGTTGAAGAGTAGATCATTCATAATAAAGTGGAGTTGCATGTAATCCT
1 TGTTGAAGAGTAGATCATTCATAATAAAGCAGAGTTGCATGCAATCCT
* * * *
107626748 TGTTTAAGAGTAGGTCATTCATAATTAAGCATAGTTGCATGCAATCCT
1 TGTTGAAGAGTAGATCATTCATAATAAAGCAGAGTTGCATGCAATCCT
107626796 AGAGATAGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.34
Consensus pattern (48 bp):
TGTTGAAGAGTAGATCATTCATAATAAAGCAGAGTTGCATGCAATCCT
Found at i:107643254 original size:27 final size:28
Alignment explanation
Indices: 107643198--107643267 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
107643188 AAATTTGTAC
107643198 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
107643226 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
107643253 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107643268 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:107643278 original size:27 final size:27
Alignment explanation
Indices: 107643198--107643279 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
107643188 AAATTTGTAC
* *
107643198 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
107643226 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
107643253 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
107643280 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:107651059 original size:27 final size:28
Alignment explanation
Indices: 107651003--107651072 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
107650993 AAATTTGTAC
107651003 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
107651031 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
107651058 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107651073 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:107651083 original size:27 final size:27
Alignment explanation
Indices: 107651003--107651084 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
107650993 AAATTTGTAC
* *
107651003 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
107651031 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
107651058 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
107651085 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:107653041 original size:28 final size:28
Alignment explanation
Indices: 107652998--107653061 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
107652988 TGGGAAGTAG
* *
107652998 TTGGGCCTGATAGGCCATATGAATGTGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
* *
107653026 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
107653054 TTGGGCCT
1 TTGGGCCT
107653062 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATAGGCCATATGAACGAGA
Found at i:107653461 original size:54 final size:53
Alignment explanation
Indices: 107653378--107653555 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 53
107653368 TAATAAAGAG
* * *
107653378 AAATTACCGAAGTACCCCCGATTTATAAAATTATCGAAATACCCCCAGTTTGTA
1 AAATTACCGAAATACCCCCAATTTATAAAATTATCGAAATACCCCC-GATTGTA
* * * *
107653432 AAATTACCGAAATACCCCCAATTTTTAAAATTACCGAAATACCCTCGATTGTG
1 AAATTACCGAAATACCCCCAATTTATAAAATTATCGAAATACCCCCGATTGTA
** * * ** *
107653485 AAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTTGTAGTGTA
1 AAATTACCGAAATACCCCCAATTTATAAAATTATCGAAATACCCCCG-ATTGTA
* *
107653539 AAATTATCAAAATACCC
1 AAATTACCGAAATACCC
107653556 TTGTAGTGTA
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
53 46 0.43
54 60 0.57
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCCCAATTTATAAAATTATCGAAATACCCCCGATTGTA
Found at i:107653497 original size:26 final size:26
Alignment explanation
Indices: 107653403--107653556 Score: 121
Period size: 27 Copynumber: 5.8 Consensus size: 26
107653393 CCCCGATTTA
* * *
107653403 TAAAATTATCGAAATACCCCCAGTTTG
1 TAAAATTATCAAAATACCCTC-GATTG
* * * * *
107653430 TAAAATTACCGAAATACCCCCAATTTT
1 TAAAATTATCAAAATACCCTCGA-TTG
* *
107653457 TAAAATTACCGAAATACCCTCGATTG
1 TAAAATTATCAAAATACCCTCGATTG
* *
107653483 TGAAATTA-CTAAAATACCCTCAATTTG
1 TAAAATTATC-AAAATACCCTCGA-TTG
* * *
107653510 TAAAATTATCGAAATACCCTTGTAGTG
1 TAAAATTATCAAAATACCCTCG-ATTG
107653537 TAAAATTATCAAAATACCCT
1 TAAAATTATCAAAATACCCT
107653557 TGTAGTGTAA
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.01
26 20 0.19
27 83 0.78
28 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (26 bp):
TAAAATTATCAAAATACCCTCGATTG
Found at i:107653507 original size:53 final size:53
Alignment explanation
Indices: 107653398--107653556 Score: 185
Period size: 53 Copynumber: 3.0 Consensus size: 53
107653388 AGTACCCCCG
* * ** *
107653398 ATTTATAAAATTATCGAAATACCCCCAGTTTGTAAAATTACCGAAATACCCCCA
1 ATTTATAAAATTATCGAAATACCCTC-GATTGTAAAATTACTAAAATACCCTCA
* * *
107653452 ATTTTTAAAATTACCGAAATACCCTCGATTGTGAAATTACTAAAATACCCTCA
1 ATTTATAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTCA
* * *
107653505 ATTTGTAAAATTATCGAAATACCCTTGTAGTGTAAAATTA-TCAAAATACCCT
1 ATTTATAAAATTATCGAAATACCCTCG-ATTGTAAAATTACT-AAAATACCCT
107653557 TGTAGTGTAA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 47 0.52
54 43 0.48
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
ATTTATAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTCA
Found at i:107653529 original size:27 final size:27
Alignment explanation
Indices: 107653378--107653529 Score: 171
Period size: 27 Copynumber: 5.7 Consensus size: 27
107653368 TAATAAAGAG
* * * *
107653378 AAATTACCGAAGTACCCCCGATTTATA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
107653405 AAATTATCGAAATACCCCCAGTTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* *
107653432 AAATTACCGAAATACCCCCAATTTTTA
1 AAATTACCGAAATACCCTCAATTTGTA
* *
107653459 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
**
107653485 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
107653512 AAATTATCGAAATACCCT
1 AAATTACCGAAATACCCT
107653530 TGTAGTGTAA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 21 0.20
27 84 0.80
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCAATTTGTA
Found at i:107653538 original size:27 final size:27
Alignment explanation
Indices: 107653508--107653596 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
107653498 ACCCTCAATT
107653508 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
107653535 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * * *
107653562 TGTAAAATAACCGACATACCCCTATAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
107653589 GGTAAAAT
1 TGTAAAAT
107653597 GACTATTTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:107653544 original size:80 final size:81
Alignment explanation
Indices: 107653378--107653528 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 81
107653368 TAATAAAGAG
* * * *
107653378 AAATTACCGAAGTACCCCCGATTTATAAAATTATCGAAATACCCCCAGTTTGTAAAATTACCGAA
1 AAATTACCGAAATACCCTCGATTTATAAAATTATCAAAATACCCCCAATTTGTAAAATTACCGAA
* *
107653443 ATACCCCCAATTTTTA
66 ATACCCCCAATGTGTA
* * * *
107653459 AAATTACCGAAATACCCTCGA-TTGTGAAATTA-CTAAAATACCCTCAATTTGTAAAATTATCGA
1 AAATTACCGAAATACCCTCGATTTATAAAATTATC-AAAATACCCCCAATTTGTAAAATTACCGA
107653522 AATACCC
65 AATACCC
107653529 TTGTAGTGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.02
80 41 0.67
81 19 0.31
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (81 bp):
AAATTACCGAAATACCCTCGATTTATAAAATTATCAAAATACCCCCAATTTGTAAAATTACCGAA
ATACCCCCAATGTGTA
Found at i:107653566 original size:54 final size:54
Alignment explanation
Indices: 107653428--107653601 Score: 147
Period size: 54 Copynumber: 3.2 Consensus size: 54
107653418 ACCCCCAGTT
** * * * * *
107653428 TGTAAAATTACCGAAATACCCCCAATTTTTAAAATTACCGAAATACCCTCG-AT
1 TGTAAAATTACTAAAATACCCTCAATGTGTAAAATTACCGAAATACCCTTGTAG
* * *
107653481 TGTGAAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACTAAAATACCCTCAATGTGTAAAATTACCGAAATACCCTTGTAG
** * * * *
107653535 TGTAAAATTA-TCAAAATACCCT-TGTAGTGTAAAATAACCGACATACCCCTATAG
1 TGTAAAATTACT-AAAATACCCTCAAT-GTGTAAAATTACCGAAATACCCTTGTAG
* *
107653589 GGTAAAATGACTA
1 TGTAAAATTACTA
107653602 TTTTGCCCTT
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
53 46 0.47
54 51 0.52
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (54 bp):
TGTAAAATTACTAAAATACCCTCAATGTGTAAAATTACCGAAATACCCTTGTAG
Found at i:107656907 original size:24 final size:25
Alignment explanation
Indices: 107656871--107656949 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 25
107656861 CTTCTTCGTT
* *
107656871 TTCACCTCCACCATTGTGCTT-ATC
1 TTCATCTCTACCATTGTGCTTCATC
**
107656895 TTCATCTCTACCATCAT-CTTCATC
1 TTCATCTCTACCATTGTGCTTCATC
*
107656919 TGCATCTCTACC-TTCG-GCTTCATC
1 TTCATCTCTACCATT-GTGCTTCATC
107656943 TTCATCT
1 TTCATCT
107656950 TCTTCTACAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
23 4 0.09
24 40 0.91
ACGTcount: A:0.16, C:0.37, G:0.06, T:0.41
Consensus pattern (25 bp):
TTCATCTCTACCATTGTGCTTCATC
Found at i:107667314 original size:6 final size:6
Alignment explanation
Indices: 107667296--107667401 Score: 101
Period size: 6 Copynumber: 17.3 Consensus size: 6
107667286 AAGAAACATT
*
107667296 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
107667344 ATCAG- GTGACAGA ATCAGA ATTAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
107667394 ATCAGA AT
1 ATCAGA AT
107667402 ATGAATGCAA
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
5 4 0.05
6 69 0.84
7 7 0.09
8 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:107667361 original size:31 final size:31
Alignment explanation
Indices: 107667296--107667401 Score: 128
Period size: 31 Copynumber: 3.5 Consensus size: 31
107667286 AAGAAACATT
*
107667296 ATCAGAA-CTAGAATCAGAATCA-G-AATTAGA
1 ATCAGAATC-AGAATCAGAATCAGGTAA-CAGA
*
107667326 ATCAGAATCAGAATCAGAATCAGGTGACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
* *
107667357 ATCAGAATTAGAATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
*
107667388 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
107667402 ATGAATGCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
30 20 0.30
31 45 0.68
32 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGA
Found at i:107667576 original size:27 final size:26
Alignment explanation
Indices: 107667520--107667638 Score: 159
Period size: 27 Copynumber: 4.5 Consensus size: 26
107667510 AGCATGACTG
* *
107667520 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
107667546 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
107667573 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
107667600 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAA-TGTGGCAGAGCCA
*
107667627 CCAGGACAGATA
1 CCAGAACAGATA
107667639 TATATATATA
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
26 17 0.20
27 64 0.76
28 3 0.04
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:107667610 original size:54 final size:54
Alignment explanation
Indices: 107667520--107667641 Score: 176
Period size: 54 Copynumber: 2.3 Consensus size: 54
107667510 AGCATGACTG
*
107667520 CCAGAACAGATA-ATGTGACAGAGTCACCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAACAGATAATCGTGGCAGAGCCA
* * *
107667573 CCAGAACAGATATATGTGGCAGAGCCACCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAA-CAGATAATCGTGGCAGAGCCA
*
107667627 CCAGGACAGATATAT
1 CCAGAACAGATATAT
107667642 ATATATATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
53 14 0.23
54 48 0.77
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGAACAGATAATCGTGGCAGAGCCA
Found at i:107667643 original size:2 final size:2
Alignment explanation
Indices: 107667636--107667675 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
107667626 ACCAGGACAG
107667636 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107667676 GTGGTGAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107668267 original size:27 final size:27
Alignment explanation
Indices: 107667937--107668260 Score: 459
Period size: 27 Copynumber: 12.0 Consensus size: 27
107667927 GGGGTAAAAT
* * * *
107667937 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
107667964 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
107667991 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
107668018 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
107668045 GGTAATTCTACCCTACATGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
107668072 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
107668099 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
107668126 GGTATTTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
107668153 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
107668180 GGTAATTCTACCCTATATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
107668207 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
107668234 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
107668261 AATAATTTTG
Statistics
Matches: 266, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 266 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:107668337 original size:27 final size:27
Alignment explanation
Indices: 107668307--107668539 Score: 202
Period size: 27 Copynumber: 8.6 Consensus size: 27
107668297 ATAAATCAAT
*
107668307 GGTACTTTGGTAATTTTACAAGTCGA-G
1 GGTATTTTGGTAATTTTACAA-TCGAGG
***
107668334 GGTATTTCAATAATTTTACAAGTCGA-G
1 GGTATTTTGGTAATTTTACAA-TCGAGG
* ** *
107668361 AGTATTTCAGTAATTTCACAAATC-AGG
1 GGTATTTTGGTAATTTTAC-AATCGAGG
* *
107668388 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAATCGAGG
* * *
107668415 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAATCGAGG
* *
107668442 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAATCGAGG
* * * * *
107668469 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAATCGAGG
* * * *
107668496 GGTATTCTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAATCGAGG
107668523 GGTATTTTGGTAATTTT
1 GGTATTTTGGTAATTTT
107668540 GTTAACCAAT
Statistics
Matches: 178, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.02
27 172 0.97
28 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAATCGAGG
Found at i:107668546 original size:27 final size:27
Alignment explanation
Indices: 107668370--107668565 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 27
107668360 GAGTATTTCA
* *
107668370 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
107668397 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* *
107668424 ATAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
107668451 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * * *
107668478 GTGATTTTATAAACCAAGGGTATTCTA
1 GTAATTTTACAAACCAGGGGTATTTTG
107668505 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*** **
107668532 GTAATTTTGTTAACCAATGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
107668559 GTAATTT
1 GTAATTT
107668566 CGTAAACTAA
Statistics
Matches: 148, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGGTATTTTG
Found at i:107668572 original size:81 final size:81
Alignment explanation
Indices: 107668287--107668565 Score: 258
Period size: 81 Copynumber: 3.4 Consensus size: 81
107668277 GATGGTAAAA
* * * * * * ** *
107668287 TGGTAATTCTATAAATCAATGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCA-ATAATTTT
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT-AGATAATTTT
** *
107668351 ACAAGTC-GAGAGTATTT
65 ACAAACCAG-GGGTATTT
** * * * * * * *
107668368 CAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTA
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTAGATAATTTTA
*
107668433 CAAACTAGGGGTATTT
66 CAAACCAGGGGTATTT
* *
107668449 TGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAG-TAATTTT
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATT-TAGATAATTTT
107668513 ACAAACCAGGGGTATTT
65 ACAAACCAGGGGTATTT
*** *
107668530 TGGTAATTTTGTTAACCAATGGTATTTTGGTAATTT
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
107668566 CGTAAACTAA
Statistics
Matches: 161, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
81 158 0.98
82 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTAGATAATTTTA
CAAACCAGGGGTATTT
Found at i:107670296 original size:28 final size:28
Alignment explanation
Indices: 107670227--107670327 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
107670217 GACAAGATTG
* * * *
107670227 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
107670257 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
107670285 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
107670314 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
107670328 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:107670321 original size:29 final size:28
Alignment explanation
Indices: 107670256--107670327 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
107670246 AAAATTGTAC
*
107670256 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
107670284 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
107670313 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107670328 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:107678100 original size:28 final size:28
Alignment explanation
Indices: 107678031--107678131 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
107678021 GACAAGATTG
* * * *
107678031 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
107678061 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
107678089 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
107678118 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
107678132 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:107678125 original size:29 final size:28
Alignment explanation
Indices: 107678060--107678131 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
107678050 AAAATTGTAC
*
107678060 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
107678088 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
107678117 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107678132 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:107684494 original size:12 final size:12
Alignment explanation
Indices: 107684477--107684537 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
107684467 GATATAGAGG
*
107684477 CTGAGCCAGAGC
1 CTGAGCCCGAGC
*
107684489 CCGAGCCCGAG-
1 CTGAGCCCGAGC
*
107684500 CTAGAACCCGAGC
1 CT-GAGCCCGAGC
* *
107684513 CTGAGCTCTAGC
1 CTGAGCCCGAGC
*
107684525 CTGAGCCCAAGC
1 CTGAGCCCGAGC
107684537 C
1 C
107684538 CGACCGGTCG
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
11 1 0.03
12 35 0.92
13 2 0.05
ACGTcount: A:0.23, C:0.39, G:0.28, T:0.10
Consensus pattern (12 bp):
CTGAGCCCGAGC
Found at i:107685099 original size:62 final size:62
Alignment explanation
Indices: 107685021--107685363 Score: 530
Period size: 62 Copynumber: 5.6 Consensus size: 62
107685011 TGATTAGTTG
* * * *
107685021 CAACATTAAAACTTGGAACAAACTTTATAATATAAATTTTGTAATATAAATTAATTACATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* *
107685083 CAACATAAAAAATTGGAACAAACTTTGTAATATAAA-TTTGTTATATAAATTAAATATATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* *
107685144 CAACATT-AAAATTGGAACAAACTTTGTAATATAAATTTTATAATATAAATTAAATACATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* * * *
107685205 CAACATAAAAAATTGGAACAAACTATGTAATATAAATTTTGTTATATAAATTCAATATATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* *
107685267 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTGGTTACATAAATTAAATACATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
*
107685329 CAACATTAAAAATTAGAAC-AACTTTGTAATATAAA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAA
107685364 ATAGGTACAT
Statistics
Matches: 256, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
60 28 0.11
61 72 0.28
62 156 0.61
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (62 bp):
CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
Found at i:107685165 original size:122 final size:123
Alignment explanation
Indices: 107685021--107685363 Score: 564
Period size: 122 Copynumber: 2.8 Consensus size: 123
107685011 TGATTAGTTG
* *
107685021 CAACATTAAAACTTGGAACAAACTTTATAATATAAATTTTGTAATATAAATTAATTACATTACAA
1 CAACATTAAAA-TTGGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAATACATTACAA
107685086 CATAAAAAATTGGAACAAACTTTGTAATATAAA-TTTGTTATATAAATTAAATATATTA
65 CATAAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATATATTA
*
107685144 CAACATTAAAATTGGAACAAACTTTGTAATATAAATTTTATAATATAAATTAAATACATTACAAC
1 CAACATTAAAATTGGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAATACATTACAAC
* *
107685209 ATAAAAAATTGGAACAAACTATGTAATATAAATTTTGTTATATAAATTCAATATATTA
66 ATAAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATATATTA
* * *
107685267 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTGGTTACATAAATTAAATACATTACAA
1 CAACATT-AAAATTGGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAATACATTACAA
* *
107685332 CATTAAAAATTAGAAC-AACTTTGTAATATAAA
65 CATAAAAAATTGGAACAAACTTTGTAATATAAA
107685364 ATAGGTACAT
Statistics
Matches: 206, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
122 82 0.40
123 57 0.28
124 67 0.33
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (123 bp):
CAACATTAAAATTGGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAATACATTACAAC
ATAAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATATATTA
Found at i:107688352 original size:14 final size:14
Alignment explanation
Indices: 107688333--107688383 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
107688323 ATAATAATAC
107688333 CTTTTCTTTCTTCT
1 CTTTTCTTTCTTCT
107688347 CTTTTCTTTCTT-T
1 CTTTTCTTTCTTCT
*
107688360 CTTCTCTTCTCCTTCT
1 CTTTTCTT-T-CTTCT
107688376 CTTGTTCT
1 CTT-TTCT
107688384 GCTATTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 8 0.26
14 13 0.42
15 3 0.10
16 4 0.13
17 3 0.10
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (14 bp):
CTTTTCTTTCTTCT
Found at i:107688358 original size:9 final size:9
Alignment explanation
Indices: 107688337--107688378 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
107688327 TAATACCTTT
107688337 TCTTTCTTC
1 TCTTTCTTC
107688346 TCTTTTCTT-
1 TC-TTTCTTC
107688355 TCTTTCTTC
1 TCTTTCTTC
107688364 TCTTCTCCTTC
1 TCTT-T-CTTC
107688375 TCTT
1 TCTT
107688379 GTTCTGCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 6 0.21
9 8 0.28
10 7 0.24
11 8 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (9 bp):
TCTTTCTTC
Found at i:107688375 original size:18 final size:18
Alignment explanation
Indices: 107688336--107688375 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
107688326 ATAATACCTT
* *
107688336 TTCTTTCTTCTCTTTTCT
1 TTCTTTCTTCTCTTCTCC
107688354 TTCTTTCTTCTCTTCTCC
1 TTCTTTCTTCTCTTCTCC
107688372 TTCT
1 TTCT
107688376 CTTGTTCTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (18 bp):
TTCTTTCTTCTCTTCTCC
Found at i:107688588 original size:3 final size:3
Alignment explanation
Indices: 107688582--107688639 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
107688572 CAACTACTAA
107688582 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
107688630 ATT ATT ATT A
1 ATT ATT ATT A
107688640 ACTAAATTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:107694962 original size:12 final size:12
Alignment explanation
Indices: 107694945--107694970 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
107694935 AAGTATTTGA
107694945 AATATTTTTCTG
1 AATATTTTTCTG
107694957 AATATTTTTCTG
1 AATATTTTTCTG
107694969 AA
1 AA
107694971 ATTATGGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (12 bp):
AATATTTTTCTG
Found at i:107697317 original size:40 final size:38
Alignment explanation
Indices: 107697273--107697372 Score: 119
Period size: 40 Copynumber: 2.6 Consensus size: 38
107697263 ACGATACCAT
* *
107697273 TTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATAC
1 TTGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCC--AC
* * *
107697313 TTGGTGTGTAAGGCTGGGTGGGTCGATTCTATCCCCAC
1 TTGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCAC
* *
107697351 ATGGTGTGTTGGGTTGGATGGG
1 TTGGTGTGTAGGGTTGGATGGG
107697373 ATAGCATGCA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 19 0.38
40 31 0.62
ACGTcount: A:0.13, C:0.13, G:0.38, T:0.36
Consensus pattern (38 bp):
TTGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCAC
Found at i:107698160 original size:16 final size:18
Alignment explanation
Indices: 107698139--107698176 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
107698129 CAGTCTCTAG
107698139 CAGTTT-ACTATAGTT-T
1 CAGTTTAACTATAGTTAT
107698155 CAGTTTAACTATAGTTAT
1 CAGTTTAACTATAGTTAT
107698173 CAGT
1 CAGT
107698177 ATATACTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
17 9 0.45
18 5 0.25
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (18 bp):
CAGTTTAACTATAGTTAT
Found at i:107707112 original size:26 final size:25
Alignment explanation
Indices: 107707074--107707248 Score: 215
Period size: 26 Copynumber: 6.6 Consensus size: 25
107707064 TGATAATATA
*
107707074 TAAATGTTTCATGATAATAGGTTAGG
1 TAAATGTTCCATGATAAT-GGTTAGG
107707100 TAAATGTTCCATGATAATGGATTAGG
1 TAAATGTTCCATGATAATGG-TTAGG
* *
107707126 TAAATATTCAATGATAATGGGTTAGG
1 TAAATGTTCCATGATAAT-GGTTAGG
107707152 TAAATGTTCCATGATAATGGATTAGTTAGG
1 TAAATGTTCCATGATAAT-G----GTTAGG
* *
107707182 TAAATATTCTATGATAATGGGTTAGG
1 TAAATGTTCCATGATAAT-GGTTAGG
107707208 TAAATGTTCCATGATAATGGTTTAGG
1 TAAATGTTCCATGATAATGG-TTAGG
107707234 TAAATGTTCCATGAT
1 TAAATGTTCCATGAT
107707249 GGCATTTCAT
Statistics
Matches: 133, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
25 4 0.03
26 103 0.77
27 2 0.02
30 24 0.18
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.37
Consensus pattern (25 bp):
TAAATGTTCCATGATAATGGTTAGG
Found at i:107707140 original size:52 final size:52
Alignment explanation
Indices: 107707084--107707248 Score: 249
Period size: 52 Copynumber: 3.1 Consensus size: 52
107707074 TAAATGTTTC
*
107707084 ATGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCA
1 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCA
*
107707136 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGTTAGGTAAATATTCT
1 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGG---A-TTAGGTAAATATTCA
* * *
107707192 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCA
107707244 ATGAT
1 ATGAT
107707249 GGCATTTCAT
Statistics
Matches: 104, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
52 53 0.51
55 1 0.01
56 50 0.48
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (52 bp):
ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCA
Found at i:107707207 original size:56 final size:55
Alignment explanation
Indices: 107707084--107707229 Score: 244
Period size: 56 Copynumber: 2.7 Consensus size: 55
107707074 TAAATGTTTC
*
107707084 ATGATAATAGGTTAGGTAAATGTTCCATGATAATGG--A-TTAGGTAAATATTCA
1 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGTTAGGTAAATATTCA
*
107707136 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGTTAGGTAAATATTCT
1 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGG-TTAGTTAGGTAAATATTCA
107707192 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTT
1 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTT
107707230 TAGGTAAATG
Statistics
Matches: 88, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
52 35 0.40
55 3 0.03
56 50 0.57
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.36
Consensus pattern (55 bp):
ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGTTAGGTAAATATTCA
Found at i:107707207 original size:82 final size:82
Alignment explanation
Indices: 107707094--107707248 Score: 256
Period size: 82 Copynumber: 1.9 Consensus size: 82
107707084 ATGATAATAG
*
107707094 GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGT
1 GTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGT
107707159 TCCATGATAATGGATTA
66 TCCATGATAATGGATTA
* * * * *
107707176 GTTAGGTAAATATTCTATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGT
1 GTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGT
107707241 TCCATGAT
66 TCCATGAT
107707249 GGCATTTCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 67 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (82 bp):
GTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGT
TCCATGATAATGGATTA
Found at i:107708761 original size:26 final size:26
Alignment explanation
Indices: 107708732--107708784 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
107708722 TTTACAGTTT
*
107708732 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
107708758 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
107708784 T
1 T
107708785 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:107709277 original size:136 final size:137
Alignment explanation
Indices: 107709032--107709317 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
107709022 GAGTAGTCTC
107709032 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
107709097 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
107709162 ACTGTTA
131 ACTGTTA
*
107709169 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
107709233 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
107709298 ACTGTTA
131 ACTGTTA
**
107709305 CCTGAATGGGCTT
1 CCCAAATGGGCTT
107709318 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 124 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:107710323 original size:26 final size:26
Alignment explanation
Indices: 107710289--107710340 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
107710279 GATTTAATTC
107710289 TTTCTCATAGTCATCAAAGAAAGGAA
1 TTTCTCATAGTCATCAAAGAAAGGAA
107710315 TTTCTCATAGTCATCAAAGAAAGGAA
1 TTTCTCATAGTCATCAAAGAAAGGAA
107710341 GTGGATATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (26 bp):
TTTCTCATAGTCATCAAAGAAAGGAA
Found at i:107710742 original size:10 final size:10
Alignment explanation
Indices: 107710727--107710751 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
107710717 TTTAATATAC
107710727 TAAATTTTTT
1 TAAATTTTTT
107710737 TAAATTTTTT
1 TAAATTTTTT
107710747 TAAAT
1 TAAAT
107710752 CACTAAGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TAAATTTTTT
Found at i:107710968 original size:41 final size:40
Alignment explanation
Indices: 107710893--107711101 Score: 120
Period size: 41 Copynumber: 5.1 Consensus size: 40
107710883 GCAAAAATTT
* *
107710893 TAAAATACAGAGCAATAGCGGCGTTTGTCTTAAAATGCCGC
1 TAAAA-ACAGAGCAACAGCGGCGTTTGTCTTAAAACGCCGC
* * *
107710934 TAAAAACAGAGCAACAGCGGCATTT-TTTACTAAAACGCCTC
1 TAAAAACAGAGCAACAGCGGCGTTTGTCT--TAAAACGCCGC
* ** * ***
107710975 TAAAAACAGATCATTAGTGGCGCTTT-AAGTAAAACGCCGC
1 TAAAAACAGAGCAACAGCGGCG-TTTGTCTTAAAACGCCGC
* ** ** * *
107711015 TAAAAACCAGATCATTAGCGATGCTT-TCGATAAAACGCCGC
1 TAAAAA-CAGAGCAACAGCGGCGTTTGTC-TTAAAACGCCGC
** *
107711056 TAAAAACCAGAGCATTAGCGGCGCTT-TCTGTAAAACGCCGC
1 TAAAAA-CAGAGCAACAGCGGCGTTTGTCT-TAAAACGCCGC
107711097 TAAAA
1 TAAAA
107711102 GTCATAGAAC
Statistics
Matches: 137, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
39 2 0.01
40 36 0.26
41 96 0.70
42 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (40 bp):
TAAAAACAGAGCAACAGCGGCGTTTGTCTTAAAACGCCGC
Found at i:107715167 original size:21 final size:20
Alignment explanation
Indices: 107715129--107715168 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
107715119 AATTGTTATA
*
107715129 TTTTGGTTATTTAGATGTTC
1 TTTTGGTTATTTACATGTTC
*
107715149 TTTTGGTCTATTTTCATGTT
1 TTTTGGT-TATTTACATGTT
107715169 TCTATCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.12, C:0.07, G:0.17, T:0.62
Consensus pattern (20 bp):
TTTTGGTTATTTACATGTTC
Found at i:107715233 original size:133 final size:133
Alignment explanation
Indices: 107714995--107715246 Score: 486
Period size: 133 Copynumber: 1.9 Consensus size: 133
107714985 TGGTGATTCC
*
107714995 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTATTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
*
107715060 TGGACTTAGATTGATTTAAGAGTTTATTGTTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
107715125 TAT
131 TAT
107715128 ATTTTGGTTATTTAGATGTTCTTTTGGTCTATTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTATTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
107715193 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
107715247 TGTTGAATTC
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 117 1.00
ACGTcount: A:0.20, C:0.10, G:0.18, T:0.52
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTCTTTTGGTCTATTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:107717206 original size:21 final size:21
Alignment explanation
Indices: 107717177--107717216 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
107717167 GTTTTTATAT
*
107717177 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
107717198 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
107717217 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:107723386 original size:21 final size:21
Alignment explanation
Indices: 107723360--107723404 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
107723350 ACTTAGAGCA
107723360 GAGGCAGCAGCGAGGGAGGCG
1 GAGGCAGCAGCGAGGGAGGCG
107723381 GAGGCAGCAGCGAGGGAGGCG
1 GAGGCAGCAGCGAGGGAGGCG
107723402 GAG
1 GAG
107723405 CAGAACAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.58, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCG
Found at i:107723836 original size:44 final size:44
Alignment explanation
Indices: 107723702--107723896 Score: 134
Period size: 42 Copynumber: 4.5 Consensus size: 44
107723692 CTGGGCAAAT
* * ** *
107723702 TAGCGGCGTTTTTTTAAAAAAGCGCCGCTACTGTTCTTGGTCTA
1 TAGCGGCGTTTTTTTATAAAAGCACCGCTAAAGTTCCTGGTCTA
* * * * * * *
107723746 TAGCGGCGCTTTTGTA-AAAATG--CCGCCAAAG-ACCAGGACCTG
1 TAGCGGCGTTTTTTTATAAAA-GCACCGCTAAAGTTCCTGG-TCTA
* *
107723788 TAGCGGCGTTTTTTTATAAAAGCACCGCTAAAGTTCTTGGTGTA
1 TAGCGGCGTTTTTTTATAAAAGCACCGCTAAAGTTCCTGGTCTA
* * *
107723832 TAGC-GCG-TTTTTTATAAAAGCGA-CACTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTTATAAAAGC-ACCGCTAAAGTTCCTGGTCTA
* * *
107723874 TGGCGGCATTTTTTTACAAAAGC
1 TAGCGGCGTTTTTTTATAAAAGC
107723897 GCTGCTATAG
Statistics
Matches: 115, Mismatches: 27, Indels: 18
0.72 0.17 0.11
Matches are distributed among these distances:
41 3 0.03
42 54 0.47
43 14 0.12
44 41 0.36
45 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (44 bp):
TAGCGGCGTTTTTTTATAAAAGCACCGCTAAAGTTCCTGGTCTA
Found at i:107726718 original size:6 final size:6
Alignment explanation
Indices: 107726703--107726811 Score: 73
Period size: 6 Copynumber: 18.7 Consensus size: 6
107726693 ATTTAGGGTT
* * * * **
107726703 ATTTCG ATTTTA ATTTTG ATTTTG ATTTTG ATTTTG CTTTAG -GGTT-
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* ** * **
107726749 ATTTCG ATTTTG -GGTT- ATTTAG ATTTCA ATTTTG ATTTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG A-TTTTG ATTTTG
107726796 ATTTTG ATTTTG ATTT
1 ATTTTG ATTTTG ATTT
107726812 CAATTTAGGG
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
5 5 0.06
6 66 0.86
7 6 0.08
ACGTcount: A:0.18, C:0.04, G:0.17, T:0.61
Consensus pattern (6 bp):
ATTTTG
Found at i:107726763 original size:16 final size:16
Alignment explanation
Indices: 107726744--107726774 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107726734 TTTTGCTTTA
*
107726744 GGGTTATTTCGATTTT
1 GGGTTATTTAGATTTT
107726760 GGGTTATTTAGATTT
1 GGGTTATTTAGATTT
107726775 CAATTTTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.03, G:0.26, T:0.55
Consensus pattern (16 bp):
GGGTTATTTAGATTTT
Found at i:107726817 original size:12 final size:12
Alignment explanation
Indices: 107726765--107726817 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
107726755 ATTTTGGGTT
*
107726765 ATTTAGATTTCA
1 ATTTTGATTTCA
**
107726777 ATTTTGATTTTTG
1 ATTTTGA-TTTCA
**
107726790 ATTTTGATTTTG
1 ATTTTGATTTCA
107726802 ATTTTGATTTCA
1 ATTTTGATTTCA
107726814 ATTT
1 ATTT
107726818 AGGGTTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
12 25 0.71
13 10 0.29
ACGTcount: A:0.23, C:0.04, G:0.11, T:0.62
Consensus pattern (12 bp):
ATTTTGATTTCA
Found at i:107727188 original size:62 final size:61
Alignment explanation
Indices: 107727081--107727216 Score: 209
Period size: 62 Copynumber: 2.2 Consensus size: 61
107727071 GTTAAAGTGT
* *
107727081 TTGGTTATTGTCTGCCATGTGCATGACAGAAATTATTATGGTTGTATTAAATTATTTTTGTA
1 TTGGTTATTGTCTACCATGTGCATGACAGAAATGATTATGGTTGTATTAAATTA-TTTTGTA
* * * *
107727143 TTGGTTACTGTCTACCATGTGCATGACAGAAATGGTTGTGTTTGTATTAAATTATTTTGTA
1 TTGGTTATTGTCTACCATGTGCATGACAGAAATGATTATGGTTGTATTAAATTATTTTGTA
107727204 TTGGTTATTGTCT
1 TTGGTTATTGTCT
107727217 GACAAAAATG
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
61 19 0.28
62 48 0.72
ACGTcount: A:0.24, C:0.09, G:0.21, T:0.47
Consensus pattern (61 bp):
TTGGTTATTGTCTACCATGTGCATGACAGAAATGATTATGGTTGTATTAAATTATTTTGTA
Found at i:107727341 original size:15 final size:15
Alignment explanation
Indices: 107727321--107727370 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
107727311 AAATAAGAAA
107727321 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
107727336 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
* ***
107727351 TATCTTAAAGTGATG
1 TGTCTGGTAGTGATG
107727366 TGTCT
1 TGTCT
107727371 AATAGGATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.18, C:0.08, G:0.32, T:0.42
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:107729168 original size:66 final size:64
Alignment explanation
Indices: 107729086--107729238 Score: 209
Period size: 66 Copynumber: 2.3 Consensus size: 64
107729076 TGTATGACTT
* *
107729086 TTTTTTAATATGCATGCAGTGATTATTGGTGCGTATGACTA-TTTTTAATATACATGATGTTAAC
1 TTTTTTAATATGCATGCAGTGATTATTGATGCGTAAGACTATTTTTTAATATAC---ATGTTAAC
107729150 TA
63 TA
* * * *
107729152 TTTTTTAATATGCATGCAGTGATTGTTGATGTGTAAGATTATTTTTTTAATATACATGTTGACTA
1 TTTTTTAATATGCATGCAGTGATTATTGATGCGTAAGACTA-TTTTTTAATATACATGTTAACTA
107729217 TTTTTTAATATGCATGCAGTGA
1 TTTTTTAATATGCATGCAGTGA
107729239 GCGTGAGTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
65 31 0.39
66 36 0.46
68 12 0.15
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (64 bp):
TTTTTTAATATGCATGCAGTGATTATTGATGCGTAAGACTATTTTTTAATATACATGTTAACTA
Found at i:107729290 original size:2 final size:2
Alignment explanation
Indices: 107729285--107729309 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
107729275 TGTTTTTTAG
107729285 GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT G
107729310 ATTGTTGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:107729989 original size:21 final size:21
Alignment explanation
Indices: 107729963--107730014 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
107729953 CAAGTGGTTG
* *
107729963 CCCCAACTCAGTAATAG-GCTA
1 CCCCAACTCAGCAAGAGAG-TA
*
107729984 CCCCAAATCAGCAAGAGAGTA
1 CCCCAACTCAGCAAGAGAGTA
107730005 CCCCAACTCA
1 CCCCAACTCA
107730015 ACAGGCTGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.37, C:0.37, G:0.13, T:0.13
Consensus pattern (21 bp):
CCCCAACTCAGCAAGAGAGTA
Found at i:107730827 original size:36 final size:36
Alignment explanation
Indices: 107730772--107730853 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 36
107730762 GTTAGCCATG
*
107730772 TATACCAGCAGTCAAGTATAACAACATAAGCAACAA
1 TATACCAGCAGCCAAGTATAACAACATAAGCAACAA
* * *
107730808 TATACCAGTAGCCATGTATAACAACATAAGTAACAA
1 TATACCAGCAGCCAAGTATAACAACATAAGCAACAA
*
107730844 TATACTAGCA
1 TATACCAGCA
107730854 ACAATAATAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.48, C:0.21, G:0.11, T:0.21
Consensus pattern (36 bp):
TATACCAGCAGCCAAGTATAACAACATAAGCAACAA
Found at i:107731228 original size:3 final size:3
Alignment explanation
Indices: 107731220--107731269 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
107731210 CTCTTCTCAT
107731220 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
107731268 TC
1 TC
107731270 TTCTTCTTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Done.