Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 345 of 438
Found at i:107731274 original size:3 final size:3
Alignment explanation
Indices: 107731268--107731316 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
107731258 ATCATCATCA
107731268 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
107731316 T
1 T
107731317 TTTTTGTTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:107732480 original size:48 final size:48
Alignment explanation
Indices: 107732409--107732505 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
107732399 TCGATACTCA
* *
107732409 GCCTCTGCTATTGACCGAGAAACAACTTGTCACTTTTTTTAACACCAC
1 GCCTCTACTATTGACCGAGAAACAACTTGTCACTTTTTCTAACACCAC
* **
107732457 GCCTCTACTGTTGACCGAGAAACAACTTGTTGCTTTTTCTAACACCAC
1 GCCTCTACTATTGACCGAGAAACAACTTGTCACTTTTTCTAACACCAC
107732505 G
1 G
107732506 AAATAGGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (48 bp):
GCCTCTACTATTGACCGAGAAACAACTTGTCACTTTTTCTAACACCAC
Found at i:107734251 original size:16 final size:16
Alignment explanation
Indices: 107734230--107734281 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 16
107734220 CGAAAATGAT
107734230 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
107734246 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
*
107734260 A-AATAA-TACAATAA
1 ATAATAAGTATAATAA
107734274 ATAATAAG
1 ATAATAAG
107734282 AAAATAACCT
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
13 6 0.21
14 7 0.24
15 11 0.38
16 5 0.17
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:107736006 original size:22 final size:22
Alignment explanation
Indices: 107735981--107736024 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
107735971 AGTTGCTTTC
**
107735981 TTTAAATATATTATATAAAAAT
1 TTTAAATATAAAATATAAAAAT
107736003 TTTAAATATAAAATATAAAAAT
1 TTTAAATATAAAATATAAAAAT
107736025 AGTTTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTAAATATAAAATATAAAAAT
Found at i:107738790 original size:3 final size:3
Alignment explanation
Indices: 107738782--107738824 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
107738772 GTTATTTACC
107738782 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
107738825 TCCTTTCCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:107741732 original size:30 final size:30
Alignment explanation
Indices: 107741697--107741756 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
107741687 TATTTTATTA
107741697 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
107741727 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
107741757 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:107753068 original size:50 final size:50
Alignment explanation
Indices: 107752993--107753269 Score: 455
Period size: 50 Copynumber: 5.5 Consensus size: 50
107752983 CTATGGCAAC
* *
107752993 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
107753043 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
107753093 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
107753143 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
107753193 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
107753244 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
107753270 CTGATCAATG
Statistics
Matches: 212, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
50 189 0.89
51 23 0.11
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:107753287 original size:31 final size:31
Alignment explanation
Indices: 107753249--107753307 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
107753239 ATGGCAAGTA
107753249 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
107753280 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
107753308 TCGGCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:107753315 original size:46 final size:46
Alignment explanation
Indices: 107753262--107753353 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
107753252 AGTGGTAGCT
* *
107753262 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
107753308 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
107753354 GTGAATAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:107753357 original size:31 final size:31
Alignment explanation
Indices: 107753309--107753377 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
107753299 ACCTGATCAT
* * *
107753309 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
107753340 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
107753371 CGGCTAC
1 CGGCTAC
107753378 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:107759942 original size:50 final size:50
Alignment explanation
Indices: 107759866--107760139 Score: 422
Period size: 50 Copynumber: 5.5 Consensus size: 50
107759856 CCATGGAAAC
* *
107759866 AAGTGATAAGTGATAGCTTCGACTACACTTATCTAATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
107759916 AAGTGATAAATAATAACTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
107759966 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATTAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
107760016 AAGTGATAAGTAATAGCTTCGGCCACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
107760066 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGGTCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
107760116 CAAGTGAAAAGTGGTAGCTTCGGC
1 -AAGTGATAAGTGATAGCTTCGGC
107760140 AACCTGATCA
Statistics
Matches: 202, Mismatches: 21, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
50 181 0.90
51 21 0.10
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:107760153 original size:31 final size:31
Alignment explanation
Indices: 107760118--107760297 Score: 270
Period size: 31 Copynumber: 5.8 Consensus size: 31
107760108 ACAAATGACA
* * *
107760118 AGTGAAAAGTGGTAGCTTCGGCAACCTGATC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
* * *
107760149 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
107760180 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
107760211 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
*
107760242 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
* * *
107760273 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAATGGTAGCTCCGGCTAC
107760298 AAGTGACAAG
Statistics
Matches: 140, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 140 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAATGGTAGCTCCGGCTACCTGATC
Found at i:107760438 original size:46 final size:45
Alignment explanation
Indices: 107760317--107760438 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 45
107760307 GTGATTTCCC
* * *
107760317 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGATATGGCATC--AGTGAGATATGCGACTG
* * *
107760364 TATAAGACCATATCTAGGATATGACATCAGTGAGATATGCGATTTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGCGA-CTG
* * *
107760410 TGTAAGACCATAGCTGGGCTATGGCATCA
1 TATAAGACCATATCTGGGATATGGCATCA
107760439 TTATGTGAAG
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
45 11 0.17
46 26 0.41
47 26 0.41
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGCGACTG
Found at i:107762302 original size:60 final size:59
Alignment explanation
Indices: 107762181--107762320 Score: 160
Period size: 60 Copynumber: 2.3 Consensus size: 59
107762171 CAAAGTTAAC
* *
107762181 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCGTAGCCCCTTACAGTATCAGAGCATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCGGAGCCCCTTACAG-ATCAGAGCATAT
* *
107762242 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGGAG-CCCTATAACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCGGAGCCCCT-T-ACAGA-TCAGAG-CATAT
*
107762302 TGGGCCTTGCCCATATCAA
1 TGGGCCTAGCCCATATCAA
107762321 CACAATTGGC
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
59 8 0.12
60 52 0.75
61 9 0.13
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCGGAGCCCCTTACAGATCAGAGCATAT
Found at i:107762416 original size:21 final size:22
Alignment explanation
Indices: 107762374--107762416 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
107762364 GATAGCCCCA
*
107762374 TCCAACCCTGCACTTGCCTGTG
1 TCCAACCCTACACTTGCCTGTG
*
107762396 TCCATCCCTACACTT-CCTGTG
1 TCCAACCCTACACTTGCCTGTG
107762417 GGGAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.14, C:0.42, G:0.14, T:0.30
Consensus pattern (22 bp):
TCCAACCCTACACTTGCCTGTG
Found at i:107768701 original size:36 final size:36
Alignment explanation
Indices: 107768605--107768703 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 36
107768595 ATTTTCACTA
**
107768605 AGGGTTCACATGATATATACAACTCGC--AGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
* * * * * * *
107768639 AAGATTCGCATAATACATGTGTCTCGCATAGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
107768675 AGGGTTCACATGATATATATGACTCGCAT
1 AGGGTTCACATGATATATATGACTCGCAT
107768704 GTAACACATA
Statistics
Matches: 47, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
34 18 0.38
36 29 0.62
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (36 bp):
AGGGTTCACATGATATATATGACTCGCATAGTTCCT
Found at i:107771977 original size:2 final size:2
Alignment explanation
Indices: 107771970--107771998 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
107771960 AAAATTTAAA
107771970 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107771999 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107772003 original size:2 final size:2
Alignment explanation
Indices: 107771998--107772037 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
107771988 ATATATATAT
107771998 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
107772038 GACAAATTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:107776181 original size:21 final size:21
Alignment explanation
Indices: 107776155--107776195 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
107776145 AGACGAGCGA
* *
107776155 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
107776176 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
107776196 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:107779331 original size:14 final size:15
Alignment explanation
Indices: 107779312--107779344 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
107779302 GAGTCAAAGC
*
107779312 TAAAAAT-TTTATAT
1 TAAAAATATTTAAAT
107779326 TAAAAATATTTAAAT
1 TAAAAATATTTAAAT
107779341 TAAA
1 TAAA
107779345 TTATTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAAATATTTAAAT
Found at i:107781689 original size:14 final size:14
Alignment explanation
Indices: 107781670--107781707 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
107781660 GTATGGGTTG
107781670 TGGGCAGAGGGCAC
1 TGGGCAGAGGGCAC
107781684 TGGGCAGAGGGCAC
1 TGGGCAGAGGGCAC
*
107781698 CGGGCAGAGG
1 TGGGCAGAGG
107781708 TGCTAGTCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.53, T:0.05
Consensus pattern (14 bp):
TGGGCAGAGGGCAC
Found at i:107785114 original size:5 final size:5
Alignment explanation
Indices: 107785101--107785170 Score: 77
Period size: 5 Copynumber: 13.4 Consensus size: 5
107785091 TCTTTTGTTT
*
107785101 TATATA TATAA TATAA TAATAA TATAA TATAA TCTAA TATTAA TATAA
1 TATA-A TATAA TATAA T-ATAA TATAA TATAA TATAA TA-TAA TATAA
* * *
107785149 TAAAA AATAA TATAT TATAA TA
1 TATAA TATAA TATAA TATAA TA
107785171 AAAATCTTAA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
5 40 0.74
6 14 0.26
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:107785127 original size:16 final size:16
Alignment explanation
Indices: 107785106--107785162 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
107785096 TGTTTTATAT
107785106 ATATAATATAATAATA
1 ATATAATATAATAATA
*
107785122 ATATAATATAAT-CTA
1 ATATAATATAATAATA
107785137 ATATTAATATAATAA-A
1 ATA-TAATATAATAATA
*
107785153 AAATAATATA
1 ATATAATATA
107785163 TTATAATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
15 12 0.33
16 24 0.67
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATAATATAATAATA
Found at i:107785131 original size:21 final size:21
Alignment explanation
Indices: 107785101--107785170 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
107785091 TCTTTTGTTT
107785101 TATATATATAATATAATAATAA
1 TATA-ATATAATATAATAATAA
* *
107785123 TATAATATAATCTAATATTAA
1 TATAATATAATATAATAATAA
* * *
107785144 TATAATAAAAAATAAT-ATAT
1 TATAATATAATATAATAATAA
107785164 TATAATA
1 TATAATA
107785171 AAAATCTTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 9 0.22
21 28 0.68
22 4 0.10
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (21 bp):
TATAATATAATATAATAATAA
Found at i:107788095 original size:29 final size:29
Alignment explanation
Indices: 107788053--107788133 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
107788043 GCATGACTGT
107788053 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* * *
107788082 GAATGTGATTTGGGCATAATGGGTCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
107788111 GAATGAGA-TTGGGCCTAGTGGGC
1 GAATGTGATTTGGGCCTAATGGGC
107788134 ATATACATGT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 12 0.27
29 33 0.73
ACGTcount: A:0.25, C:0.12, G:0.35, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:107795838 original size:28 final size:29
Alignment explanation
Indices: 107795756--107795844 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
107795746 AAAGCATGAC
* *
107795756 TATGAATGTGATTTAGGCCTAATGGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
**
107795785 TACAAATGTA-ATTTGGGCCTAATGGGCCA
1 TATGAATG-AGATTTGGGCCTAATGGGCCA
*
107795814 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
107795842 TAT
1 TAT
107795845 ACATGTATGT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
28 20 0.39
29 31 0.61
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
TATGAATGAGATTTGGGCCTAATGGGCCA
Found at i:107800771 original size:24 final size:24
Alignment explanation
Indices: 107800743--107800788 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
107800733 ACAGAGCATT
107800743 ACCGAACCTTTCAGACATATTACG
1 ACCGAACCTTTCAGACATATTACG
107800767 ACCGAACCTTTCAGACATATTA
1 ACCGAACCTTTCAGACATATTA
107800789 TGAACCTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (24 bp):
ACCGAACCTTTCAGACATATTACG
Found at i:107802071 original size:22 final size:22
Alignment explanation
Indices: 107802038--107802084 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
107802028 TAATTTATTT
*
107802038 AATTCAATTCAA-ATCACTTTCA
1 AATTCAATTCAATAT-ACATTCA
107802060 AATTCCAA-TCAATATACATTCA
1 AATT-CAATTCAATATACATTCA
107802082 AAT
1 AAT
107802085 ATTCACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (22 bp):
AATTCAATTCAATATACATTCA
Found at i:107802848 original size:8 final size:8
Alignment explanation
Indices: 107802831--107802920 Score: 109
Period size: 8 Copynumber: 11.6 Consensus size: 8
107802821 CTTTTGTTAT
107802831 ATATATATA
1 ATATA-ATA
107802840 ATATAATA
1 ATATAATA
107802848 ATATAATA
1 ATATAATA
107802856 ATATAATA
1 ATATAATA
107802864 ATATAATA
1 ATATAATA
107802872 ATATAATA
1 ATATAATA
107802880 ATATAAT-
1 ATATAATA
*
107802887 ATA-ATGTA
1 ATATA-ATA
107802895 ATAT--TA
1 ATATAATA
107802901 ATATAATA
1 ATATAATA
*
107802909 A-AAAATA
1 ATATAATA
107802916 ATATA
1 ATATA
107802921 TTATAATAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 13
0.82 0.03 0.15
Matches are distributed among these distances:
6 7 0.10
7 10 0.14
8 50 0.69
9 5 0.07
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:107802904 original size:6 final size:5
Alignment explanation
Indices: 107802829--107802928 Score: 82
Period size: 5 Copynumber: 19.6 Consensus size: 5
107802819 TTCTTTTGTT
107802829 ATATA TATATA ATAT- A-ATA ATATA ATA-A TATAATA ATATA ATA-A
1 ATATA -ATATA ATATA ATATA ATATA ATATA -AT-ATA ATATA ATATA
* * *
107802873 TATAATA ATATA ATATA ATGTA ATATTA ATATA ATAAA AAATA ATATA
1 -AT-ATA ATATA ATATA ATATA ATA-TA ATATA ATATA ATATA ATATA
*
107802921 TTATA ATA
1 ATATA ATA
107802929 AAAATCTTAA
Statistics
Matches: 77, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
3 2 0.03
4 4 0.05
5 53 0.69
6 16 0.21
7 2 0.03
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:107802932 original size:21 final size:20
Alignment explanation
Indices: 107802831--107802932 Score: 66
Period size: 21 Copynumber: 4.8 Consensus size: 20
107802821 CTTTTGTTAT
*
107802831 ATATATATAATATAATAATATA
1 ATATATATAATA-AA-AAAATA
* *
107802853 ATA-ATATAATAATATAATA
1 ATATATATAATAAAAAAATA
*
107802872 ATATA-ATAATATAATATAATGTA
1 ATATATATAATA-AA-A-AA-ATA
107802895 ATATTAATATAAT-AAAAAATA
1 ATA-T-ATATAATAAAAAAATA
107802916 ATATATTATAATAAAAA
1 ATATA-TATAATAAAAA
107802933 TCTTAACTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 21
0.69 0.08 0.23
Matches are distributed among these distances:
19 14 0.22
20 10 0.16
21 18 0.29
22 6 0.10
23 6 0.10
24 3 0.05
25 1 0.02
26 5 0.08
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (20 bp):
ATATATATAATAAAAAAATA
Found at i:107806793 original size:12 final size:12
Alignment explanation
Indices: 107806776--107806819 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
107806766 CATATTTGTT
107806776 ATTTGAATCTGA
1 ATTTGAATCTGA
107806788 ATTTGAATCTGA
1 ATTTGAATCTGA
* *
107806800 TATCTAAATCTGA
1 -ATTTGAATCTGA
*
107806813 ATATGAA
1 ATTTGAA
107806820 ACTAAGTCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (12 bp):
ATTTGAATCTGA
Found at i:107813144 original size:26 final size:26
Alignment explanation
Indices: 107813108--107813217 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
107813098 TGATACAAAT
*
107813108 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
107813134 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
107813160 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
107813186 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
107813212 TGATAA
1 TGATAA
107813218 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:107820510 original size:33 final size:34
Alignment explanation
Indices: 107820473--107820553 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
107820463 TCTCGATTGG
* *
107820473 TACCAAATATG-CCATTCTAAACTAGCACCAAAT
1 TACCAAATAAGTCAATTCTAAACTAGCACCAAAT
*
107820506 TACCATATAAGTCAATTCTAAACTAGCACCAAAT
1 TACCAAATAAGTCAATTCTAAACTAGCACCAAAT
*
107820540 TACCATATAAGTCA
1 TACCAAATAAGTCA
107820554 TACATACTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 9 0.20
34 35 0.80
ACGTcount: A:0.43, C:0.25, G:0.06, T:0.26
Consensus pattern (34 bp):
TACCAAATAAGTCAATTCTAAACTAGCACCAAAT
Found at i:107820528 original size:34 final size:34
Alignment explanation
Indices: 107820486--107820553 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
107820476 CAAATATGCC
107820486 ATTCTAAACTAGCACCAAATTACCATATAAGTCA
1 ATTCTAAACTAGCACCAAATTACCATATAAGTCA
107820520 ATTCTAAACTAGCACCAAATTACCATATAAGTCA
1 ATTCTAAACTAGCACCAAATTACCATATAAGTCA
107820554 TACATACTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (34 bp):
ATTCTAAACTAGCACCAAATTACCATATAAGTCA
Found at i:107821380 original size:25 final size:25
Alignment explanation
Indices: 107821319--107821399 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
107821309 TGCTCATACA
*
107821319 AGCTGTGAATCGGTATGCTCAC-TCG
1 AGCTGTAAATCGGTATGCTCACAT-G
** * *
107821344 AGCCATATATCGGTATGCTCTCATG
1 AGCTGTAAATCGGTATGCTCACATG
* *
107821369 AGCTGTAAATCGATATGCTCACACG
1 AGCTGTAAATCGGTATGCTCACATG
107821394 AGCTGT
1 AGCTGT
107821400 GGGTCAGAAC
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
25 43 0.98
26 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AGCTGTAAATCGGTATGCTCACATG
Found at i:107826138 original size:11 final size:10
Alignment explanation
Indices: 107826069--107826154 Score: 56
Period size: 10 Copynumber: 8.6 Consensus size: 10
107826059 CACATTAGCA
107826069 TTTAATTAATT
1 TTTAA-TAATT
107826080 TTTAA-AATT
1 TTTAATAATT
107826089 TTTAA-AATAT
1 TTTAATAAT-T
**
107826099 TAAAAATATATT
1 T-TTAATA-ATT
*
107826111 TTT-AT-AGT
1 TTTAATAATT
107826119 TTTAATAATT
1 TTTAATAATT
107826129 TTTAAATAA-T
1 TTT-AATAATT
*
107826139 TTTAATGATT
1 TTTAATAATT
107826149 TTTAAT
1 TTTAAT
107826155 TTTAAAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
8 5 0.08
9 18 0.30
10 20 0.33
11 12 0.20
12 3 0.05
13 2 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
TTTAATAATT
Found at i:107830539 original size:13 final size:13
Alignment explanation
Indices: 107830521--107830583 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
107830511 TTAGCTATAA
107830521 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
107830534 TTTTGAAAAATG-
1 TTTTGAAAAGTGC
* *
107830546 TTGTGGAAAAATGC
1 TT-TTGAAAAGTGC
107830560 TTTT-AAGAAGTGC
1 TTTTGAA-AAGTGC
107830573 TTTTGAAAAGT
1 TTTTGAAAAGT
107830584 TTGGTTTCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
12 4 0.10
13 34 0.81
14 4 0.10
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:107833601 original size:95 final size:94
Alignment explanation
Indices: 107833513--107834037 Score: 477
Period size: 95 Copynumber: 5.5 Consensus size: 94
107833503 TCAACAAGCA
* *
107833513 AATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
**
107833578 ACTTAAGTTGTGAACTTAAATCAACGAGC
66 ACTTAAGTTGTGAACTTAAATCAGTGAGC
** * * * * *
107833607 CGTTTGAAGCAGCGATATTAAATTAGCTAACTCAGAGAGGATTGTTCATGATATTAAACCAAATG
1 AATTAG-AGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATG
* * * * *
107833672 AACTTAGGCTG-CAATCTTAGATCAGTGAGG
65 AACTTAAGTTGTGAA-CTTAAATCAGTGAGC
** * * *
107833702 ATATTAGAGCAATGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATG
1 A-ATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATG
* * *
107833767 AACTT-AGATTGCGATCTTAAATCAGTGACCC
65 AACTTAAG-TTGTGAACTTAAATCAGTGA-GC
* * * * * *
107833798 ATTTGGAGTAGGGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
* *
107833863 ACTT-AGCTTG-CAATCCTAAATTC-GTGAGTC
66 ACTTAAG-TTGTGAA-CTTAAA-TCAGTGAG-C
* * * * ** *
107833893 ATTTGGAGTAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGATAGTAAATCGAATGA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
* *
107833958 ACTTAGGTTGTGATA-TTAAATCAGGGAGTC
66 ACTTAAGTTGTGA-ACTTAAATCAGTGAG-C
* * * * * * *
107833988 ATTTGGAGTAGCGGTATTAAATCAGCTACCTTAGAGAATATTGTTCATGA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
107834038 CAAATAAACT
Statistics
Matches: 353, Mismatches: 65, Indels: 25
0.80 0.15 0.06
Matches are distributed among these distances:
94 9 0.03
95 334 0.95
96 9 0.03
97 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (94 bp):
AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
ACTTAAGTTGTGAACTTAAATCAGTGAGC
Found at i:107833766 original size:190 final size:189
Alignment explanation
Indices: 107833436--107834037 Score: 674
Period size: 190 Copynumber: 3.2 Consensus size: 189
107833426 GGTGGTTTGG
* * * * * * ***
107833436 AAATCAACTAACTCAAATAGGATTGTTGATGATGATAAACCAAATGAATTTAGGCTATGATCTTA
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGAT-ATAAACCAAATGAACTTAGGCTGCAATCTTA
*** *
107833501 GATCAACAAGCAAATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAG
65 GATCAGTGAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAG
* * * *
107833566 TAAATCAAATGAACTTAAGTTGTGAACTTAAATCAACGAGCCGTTTGAAGCAGCGATATT
130 TAAATCAAATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
* *
107833626 AAATTAGCTAACTCAGAGAGGATTGTTCATGATATTAAACCAAATGAACTTAGGCTGCAATCTTA
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGATA-TAAACCAAATGAACTTAGGCTGCAATCTTA
* * *
107833691 GATCAGTGAGGATATTAGAGCAATGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAG
65 GATCAGTGAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAG
* * * * * *
107833756 TAGATCAAATGAACTT-AGATTGCGATCTTAAATCAGTGACCCATTTGGAGTAGGGATATT
130 TAAATCAAATGAACTTAAG-TTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
* * *
107833816 AAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTA-GCTTGCAATCCT
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGAT-ATAAACCAAATGAACTTAGGC-TGCAATCTT
* * * * * * **
107833880 AAATTC-GTGAGTCAT-TTGGAGTAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGA
64 AGA-TCAGTGAG-CATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGA
* * * * *
107833943 TAGTAAATCGAATGAACTTAGGTTGTGATA-TTAAATCAGGGAGTCATTTGGAGTAGCGGTATT
127 TAGTAAATCAAATGAACTTAAGTTGTGA-ACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
* * *
107834006 AAATCAGCTACCTTAGAGAATATTGTTCATGA
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGA
107834038 CAAATAAACT
Statistics
Matches: 349, Mismatches: 55, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
189 5 0.01
190 338 0.97
191 6 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (189 bp):
AAATCAGCTAACTCAGAGAAGATTGTTCATGATATAAACCAAATGAACTTAGGCTGCAATCTTAG
ATCAGTGAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGT
AAATCAAATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
Found at i:107834033 original size:285 final size:285
Alignment explanation
Indices: 107833525--107834037 Score: 638
Period size: 285 Copynumber: 1.8 Consensus size: 285
107833515 TTAGAGCAAC
* * * *
107833525 GATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGTG
1 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
* * * ** **
107833590 AACTTAAATCAACGAGCCGTTTGAAGCAGCGATATTAAATTAGCTAACTCAGAGAGGATTGTTCA
66 AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
* * * * * *
107833655 TGATATTAAACCAAATGAACTTAGGCTGCAATCTTAGATCAGTGAGGATATTAGAGCAATGATAT
131 TGATAGTAAACCAAATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
* *
107833720 TAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
196 TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
107833785 AAATCAGTGACCCATTTGGAGTAGG
261 AAATCAGTGACCCATTTGGAGTAGG
107833810 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTT-AGCTTG-
1 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAG-TTGT
** * * *
107833873 CAATCCTAAATTC-GTGAGTCATTTGGAGTAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
65 CAA-CCTAAA-TCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
* * * ** * * *
107833937 TCATGATAGTAAATCGAATGAACTTAGGTTGTGATATTAAATCAGGGAGTCAT-TTGGAGTAGCG
128 TCATGATAGTAAACCAAATGAACTTAGGCTGCAATATTAAATCAGGGAG-CATATTAGAGCAACG
* * * *
107834001 GTATTAAATCAGCTACCTTAGAGAATATTGTTCATGA
192 ATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
107834038 CAAATAAACT
Statistics
Matches: 188, Mismatches: 36, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
284 4 0.02
285 180 0.96
286 4 0.02
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (285 bp):
GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
TGATAGTAAACCAAATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
AAATCAGTGACCCATTTGGAGTAGG
Found at i:107846501 original size:27 final size:26
Alignment explanation
Indices: 107846471--107846533 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
107846461 AGATAATTAA
107846471 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
107846498 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
107846525 AATATAAAT
1 AATA-AAAT
107846534 AAAAAGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:107846520 original size:15 final size:15
Alignment explanation
Indices: 107846500--107846529 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
107846490 ATAATCCTAA
*
107846500 TAATTATCTTAATAT
1 TAATTATCCTAATAT
107846515 TAATTATCCTAATAT
1 TAATTATCCTAATAT
107846530 AAATAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:107854072 original size:2 final size:2
Alignment explanation
Indices: 107854065--107854100 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
107854055 CTTTATCAGC
107854065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107854101 CATTTCAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107865952 original size:21 final size:21
Alignment explanation
Indices: 107865906--107865951 Score: 69
Period size: 19 Copynumber: 2.2 Consensus size: 21
107865896 AAAGTTAAAA
107865906 AAAAATTACATATAATTTTTT
1 AAAAATTACATATAATTTTTT
107865927 AAAAATT-CATA-AATTTTTT
1 AAAAATTACATATAATTTTTT
107865946 ATAAAA
1 A-AAAA
107865952 AAATTGTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.38
20 8 0.33
21 7 0.29
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAAATTACATATAATTTTTT
Found at i:107866881 original size:6 final size:6
Alignment explanation
Indices: 107866870--107866895 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
107866860 TTGATGTGGT
107866870 ATAGGG ATAGGG ATAGGG ATAGGG AT
1 ATAGGG ATAGGG ATAGGG ATAGGG AT
107866896 CGTGATGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.46, T:0.19
Consensus pattern (6 bp):
ATAGGG
Found at i:107868002 original size:38 final size:39
Alignment explanation
Indices: 107867942--107868016 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
107867932 AAAAAATAGT
** * *
107867942 AGAGGATTTTTTTCAACAG-AAAATATTTTGCAACAGCC
1 AGAGGATTTTCCTCAACAGAAAAATATTCTCCAACAGCC
107867980 AGAGGATTTTCCTCAATC-GAAAAATATTCTCCAACAG
1 AGAGGATTTTCCTCAA-CAGAAAAATATTCTCCAACAG
107868017 AAAATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 15 0.48
39 16 0.52
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (39 bp):
AGAGGATTTTCCTCAACAGAAAAATATTCTCCAACAGCC
Found at i:107873413 original size:14 final size:14
Alignment explanation
Indices: 107873394--107873428 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
107873384 GTTTGCATGT
*
107873394 AAAATGGTTTTCGG
1 AAAATGATTTTCGG
*
107873408 AAAATGATTTTTGG
1 AAAATGATTTTCGG
107873422 AAAATGA
1 AAAATGA
107873429 GTTATTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (14 bp):
AAAATGATTTTCGG
Found at i:107878904 original size:28 final size:28
Alignment explanation
Indices: 107878871--107878925 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
107878861 ATATCCTAAC
* *
107878871 TTGATTTAAAATTTTAATTTAAATTAAG
1 TTGATTGAAAATTTTAAGTTAAATTAAG
*
107878899 TTGATTGAAATTTTTAAGTTAAATTAA
1 TTGATTGAAAATTTTAAGTTAAATTAA
107878926 AAAAATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (28 bp):
TTGATTGAAAATTTTAAGTTAAATTAAG
Found at i:107883487 original size:14 final size:13
Alignment explanation
Indices: 107883470--107883503 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
107883460 AACCTAACCC
107883470 AAAAAAAAACAAA
1 AAAAAAAAACAAA
*
107883483 GAAAAAAAAAGAAA
1 -AAAAAAAAACAAA
107883497 AAAAAAA
1 AAAAAAA
107883504 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAACAAA
Found at i:107883499 original size:10 final size:10
Alignment explanation
Indices: 107883473--107883502 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
107883463 CTAACCCAAA
107883473 AAAAAACAAAG
1 AAAAAA-AAAG
107883484 AAAAAAAAAG
1 AAAAAAAAAG
107883494 AAAAAAAAA
1 AAAAAAAAA
107883503 ACTTACCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.68
11 6 0.32
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:107883515 original size:16 final size:17
Alignment explanation
Indices: 107883496--107883536 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
107883486 AAAAAAAGAA
*
107883496 AAAAAAAACTTA-CCCC
1 AAAAAAAACTAACCCCC
*
107883512 AAAAAAATCTAACCCCC
1 AAAAAAAACTAACCCCC
107883529 AAAAAAAA
1 AAAAAAAA
107883537 AGAAGAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.63, C:0.27, G:0.00, T:0.10
Consensus pattern (17 bp):
AAAAAAAACTAACCCCC
Found at i:107883517 original size:17 final size:18
Alignment explanation
Indices: 107883495--107883537 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
107883485 AAAAAAAAGA
*
107883495 AAAAAAAAACTTA-CCCC
1 AAAAAAAAACTAACCCCC
*
107883512 -AAAAAAATCTAACCCCC
1 AAAAAAAAACTAACCCCC
107883529 AAAAAAAAA
1 AAAAAAAAA
107883538 GAAGAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 10 0.48
17 4 0.19
18 7 0.33
ACGTcount: A:0.65, C:0.26, G:0.00, T:0.09
Consensus pattern (18 bp):
AAAAAAAAACTAACCCCC
Found at i:107884186 original size:21 final size:19
Alignment explanation
Indices: 107884144--107884199 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 19
107884134 TTGTTATCAC
* *
107884144 TATTATTTTATATATTGTTA
1 TATTATATTATAT-TTGCTA
107884164 TTATTATATTATATTTAGCTA
1 -TATTATATTATATTT-GCTA
107884185 T-TTATATATATATTT
1 TATTATAT-TATATTT
107884200 TCTTTATGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 6 0.19
20 10 0.32
21 15 0.48
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (19 bp):
TATTATATTATATTTGCTA
Found at i:107886622 original size:12 final size:12
Alignment explanation
Indices: 107886602--107886637 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
107886592 ATTCATTTAA
107886602 CATTCATGCATT
1 CATTCATGCATT
*
107886614 CATTTATGCATT
1 CATTCATGCATT
*
107886626 CATTCATTCATT
1 CATTCATGCATT
107886638 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:107891613 original size:42 final size:44
Alignment explanation
Indices: 107891544--107891637 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 44
107891534 CTGTACATTT
* *
107891544 AGTCTGCTCCACTGCGACTTCAAGGAGATGAGACTTGTAACTTC
1 AGTCTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTC
* * *
107891588 AGTCTGCTCCA-TGC-ACTTCAGGGAGATAAGGCTAGTGACTTC
1 AGTCTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTC
*
107891630 AATCTGCT
1 AGTCTGCT
107891638 TCGCTGAGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
42 30 0.68
43 3 0.07
44 11 0.25
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.28
Consensus pattern (44 bp):
AGTCTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTC
Found at i:107899871 original size:20 final size:20
Alignment explanation
Indices: 107899846--107899893 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
107899836 AGATTACATA
*
107899846 TAAGGCTTGGCCCTGATACT
1 TAAGGCCTGGCCCTGATACT
107899866 TAAGGCCTGGCCCTGATACT
1 TAAGGCCTGGCCCTGATACT
107899886 TAAGGCCT
1 TAAGGCCT
107899894 TGACCTGCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (20 bp):
TAAGGCCTGGCCCTGATACT
Found at i:107899900 original size:20 final size:20
Alignment explanation
Indices: 107899846--107899900 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
107899836 AGATTACATA
* *
107899846 TAAGGCTTGGCCCTGATACT
1 TAAGGCCTGGACCTGATACT
*
107899866 TAAGGCCTGGCCCTGATACT
1 TAAGGCCTGGACCTGATACT
*
107899886 TAAGGCCTTGACCTG
1 TAAGGCCTGGACCTG
107899901 CCTAGAAGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.27
Consensus pattern (20 bp):
TAAGGCCTGGACCTGATACT
Found at i:107903618 original size:18 final size:19
Alignment explanation
Indices: 107903590--107903632 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
107903580 TAATTCGTCA
*
107903590 AATAATAAAAATTAATAAT
1 AATAATAAAAAGTAATAAT
*
107903609 AATAAT-AAAAGTAATGAT
1 AATAATAAAAAGTAATAAT
107903627 AATAAT
1 AATAAT
107903633 GAGAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
AATAATAAAAAGTAATAAT
Found at i:107911707 original size:29 final size:29
Alignment explanation
Indices: 107911670--107911737 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
107911660 CATGTGACTA
**
107911670 GCCCGTGTGCCCTAAAAATGTTCACACAC
1 GCCCGTGTGCCCTAAAAATGGCCACACAC
*
107911699 GCCCATGTGCCCTAAAAATGGCCACACAC
1 GCCCGTGTGCCCTAAAAATGGCCACACAC
107911728 GCCCGTGTGC
1 GCCCGTGTGC
107911738 TAGGTCGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.25, C:0.37, G:0.21, T:0.18
Consensus pattern (29 bp):
GCCCGTGTGCCCTAAAAATGGCCACACAC
Found at i:107912684 original size:48 final size:48
Alignment explanation
Indices: 107912621--107912767 Score: 204
Period size: 48 Copynumber: 3.0 Consensus size: 48
107912611 TACTCAGAAG
* *
107912621 TCTCTCACCCTAAGTGCCAATATCATGGCCCGAAGCCAACTCAATGAA
1 TCTCACACCCGAAGTGCCAATATCATGGCCCGAAGCCAACTCAATGAA
* * *
107912669 TCTCACACCCGAAGTGCCAATATCATGGCCTGAAGCCAGCTCAATGTA
1 TCTCACACCCGAAGTGCCAATATCATGGCCCGAAGCCAACTCAATGAA
* * * *
107912717 TCTCGCACCTGAAGTGTCAATATTATGGCCCGAAGCCAACTCAATGTAA
1 TCTCACACCCGAAGTGCCAATATCATGGCCCGAAGCCAACTCAATG-AA
107912766 TC
1 TC
107912768 CCTAATGACA
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
48 83 0.97
49 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (48 bp):
TCTCACACCCGAAGTGCCAATATCATGGCCCGAAGCCAACTCAATGAA
Found at i:107913322 original size:21 final size:20
Alignment explanation
Indices: 107913294--107913333 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
107913284 CAAAACTTGT
107913294 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
107913314 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
107913334 AAAGCTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:107922665 original size:21 final size:21
Alignment explanation
Indices: 107922641--107922686 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
107922631 TTAATTTTTT
107922641 ATTTCAGGATTTTCAAATTTC
1 ATTTCAGGATTTTCAAATTTC
107922662 ATTTCAGGATTTTCAAATTTC
1 ATTTCAGGATTTTCAAATTTC
107922683 ATTT
1 ATTT
107922687 TTTATATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.50
Consensus pattern (21 bp):
ATTTCAGGATTTTCAAATTTC
Found at i:107923084 original size:54 final size:53
Alignment explanation
Indices: 107922988--107923089 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
107922978 TTATAAGATA
* * * * *
107922988 TATCATATTTATAAATAAAAATTTTAATTTTATTAAATAATTAATTAAAAAAAT
1 TATCATACTTATAAATAAAAATTATAATTCTATAAAAAAATT-ATTAAAAAAAT
* *
107923042 TATCATACTTCTAAATAAAAATTATGATTCTATAAAAAAATTATTAAA
1 TATCATACTTATAAATAAAAATTATAATTCTATAAAAAAATTATTAAA
107923090 TATATTTATA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 6 0.15
54 35 0.85
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (53 bp):
TATCATACTTATAAATAAAAATTATAATTCTATAAAAAAATTATTAAAAAAAT
Found at i:107923087 original size:22 final size:22
Alignment explanation
Indices: 107923033--107923087 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 22
107923023 AATAATTAAT
*
107923033 TAAAAAAATTATCATACTTCTA
1 TAAAAAAATTATTATACTTCTA
*
107923055 -AATAAAAATTA-T-GA-TTCTA
1 TAA-AAAAATTATTATACTTCTA
107923074 TAAAAAAATTATTA
1 TAAAAAAATTATTA
107923088 AATATATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 9
0.71 0.05 0.24
Matches are distributed among these distances:
19 13 0.48
20 4 0.15
21 2 0.07
22 8 0.30
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (22 bp):
TAAAAAAATTATTATACTTCTA
Found at i:107923413 original size:26 final size:28
Alignment explanation
Indices: 107923375--107923451 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 28
107923365 TTTATTAGTA
*
107923375 TTATATATGAATTATCA-AAA-TAATT-T
1 TTATATATTAATTAT-ATAAATTAATTAT
107923401 TTATATATTAATTATATAAATTAATTAT
1 TTATATATTAATTATATAAATTAATTAT
*
107923429 TT-TATGTTAATTATAGT-AATTAA
1 TTATATATTAATTATA-TAAATTAA
107923452 AAAATTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
25 1 0.02
26 17 0.38
27 23 0.51
28 4 0.09
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (28 bp):
TTATATATTAATTATATAAATTAATTAT
Found at i:107923798 original size:12 final size:12
Alignment explanation
Indices: 107923781--107923805 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
107923771 TGTTTCATTG
107923781 TGTATATATATA
1 TGTATATATATA
107923793 TGTATATATATA
1 TGTATATATATA
107923805 T
1 T
107923806 ATATGTTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTATATATATA
Found at i:107924751 original size:2 final size:2
Alignment explanation
Indices: 107924744--107924776 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
107924734 GAATCATTTG
*
107924744 TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107924777 CATCGTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:107927666 original size:19 final size:17
Alignment explanation
Indices: 107927642--107927685 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
107927632 TAACAACATA
107927642 AATAATAAAATGAAATGAC
1 AATAATAAAATG-AAT-AC
**
107927661 AATAATATGATGAATAC
1 AATAATAAAATGAATAC
107927678 AATAATAA
1 AATAATAA
107927686 GAAATAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 9 0.41
18 3 0.14
19 10 0.45
ACGTcount: A:0.61, C:0.05, G:0.09, T:0.25
Consensus pattern (17 bp):
AATAATAAAATGAATAC
Found at i:107928283 original size:15 final size:15
Alignment explanation
Indices: 107928263--107928296 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
107928253 CACGAAAATG
**
107928263 AAATAAAAGGGATAA
1 AAATAAAACAGATAA
107928278 AAATAAAACAGATAA
1 AAATAAAACAGATAA
107928293 AAAT
1 AAAT
107928297 GAAATAGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.12, T:0.15
Consensus pattern (15 bp):
AAATAAAACAGATAA
Found at i:107929737 original size:94 final size:93
Alignment explanation
Indices: 107929618--107930128 Score: 420
Period size: 94 Copynumber: 5.4 Consensus size: 93
107929608 GTGTCACAGT
* * * *
107929618 TTCATCTTGCTCCATTGCAACTTCAAGGAGATAAGGTTTGCTGTTGTAGTTTCAATCTATTCCAT
1 TTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTATTGTAGTTTCAATCTA-TCCAC
*
107929683 TACAACTTCAGGGGTATAGGATTTGTAAC
65 TACAACTTCAGGGGTATAGGATTTGTAGC
** * * * ** * * *
107929712 TTCATCTTATTCCACTGTAACTTCAAGGAGATAAAATTCGCCGTTATAGCTTCAATCTGACCCAC
1 TTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTATTGTAGTTTCAATCT-ATCCAC
*
107929777 TGCAACTTCAGGGGTATAGGATTTGTAGC
65 TACAACTTCAGGGGTATAGGATTTGTAGC
* * * * * * * * * * *
107929806 TTCATTTTGGTCTACTGCATCTTCAGGGAGATAAGATTTGAC-ATCGTAATTTTATTCTAACATA
1 TTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTTG-CTATTGTAGTTTCAATCTATC-CA
* * *
107929870 TTGCAACTTCAGGGGTATAGGACTTGTAGC
64 CTACAACTTCAGGGGTATAGGATTTGTAGC
* * *
107929900 TTCATCTTGCTCCACTGCAACTTCAAGGGGATAAGATTCGTTATTGTAGTTTCAATCTATTCCAC
1 TTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTATTGTAGTTTCAATCTA-TCCAC
* * * * *
107929965 TACAACTTTAAGGATATAGGGTTTGTAGT
65 TACAACTTCAGGGGTATAGGATTTGTAGC
** * * * * * * * *
107929994 TTTTTCTTGCTCCACTGTAACTTC-AGAGAGATAAGATTTGCAATTGTAATTTTATTCCGACCCC
1 TTCATCTTGCTCCACTGCAACTTCAAG-GAGATAAGATTTGCTATTGTAGTTTCAAT-CTATCCA
* *
107930058 CTACAACTTCAAGGGTATAGGAATTGTAGC
64 CTACAACTTCAGGGGTATAGGATTTGTAGC
* * *
107930088 TTTAATC-TGATTCACTGCAACTTC-AGGA-ATATAGAATTTGC
1 -TTCATCTTGCTCCACTGCAACTTCAAGGAGATA-AG-ATTTGC
107930129 AGCTTTATCT
Statistics
Matches: 328, Mismatches: 79, Indels: 20
0.77 0.19 0.05
Matches are distributed among these distances:
92 3 0.01
93 8 0.02
94 308 0.94
95 9 0.03
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (93 bp):
TTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTATTGTAGTTTCAATCTATCCACT
ACAACTTCAGGGGTATAGGATTTGTAGC
Found at i:107929823 original size:44 final size:43
Alignment explanation
Indices: 107929775--107929937 Score: 119
Period size: 44 Copynumber: 3.6 Consensus size: 43
107929765 AATCTGACCC
* *
107929775 ACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATTTTGGTCT
1 ACTGCAACTTCAGGGG-ATAAGATTTGTAGCTTCATTTTGCTCT
* * * * * *
107929819 ACTGCATCTTCAGGGAGATAAGATTTGACATCGTAATTTTATTCTAACAT
1 ACTGCAACTTCAGGG-GATAAGATTTG-TAGCTTCA-TTT-TGCT--C-T
* * * * *
107929869 ATTGCAACTTCAGGGGTATAGGACTTGTAGCTTCATCTTGCTCC
1 ACTGCAACTTCAGGGG-ATAAGATTTGTAGCTTCATTTTGCTCT
107929913 ACTGCAACTTCAAGGGGATAAGATT
1 ACTGCAACTTC-AGGGGATAAGATT
107929938 CGTTATTGTA
Statistics
Matches: 88, Mismatches: 22, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
44 39 0.44
45 11 0.12
46 3 0.03
47 5 0.06
48 2 0.02
49 6 0.07
50 22 0.25
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (43 bp):
ACTGCAACTTCAGGGGATAAGATTTGTAGCTTCATTTTGCTCT
Found at i:107930299 original size:232 final size:231
Alignment explanation
Indices: 107929871--107930311 Score: 512
Period size: 232 Copynumber: 1.9 Consensus size: 231
107929861 TCTAACATAT
** * * * * ** *
107929871 TGCAACTTCAGGGGTATAGGACTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGGGATAAGA
1 TGCAACTTCAGGAATATAGAACTTGCAGCTTCATCTTACTCCACTACAACTTCAAGAAGATAAAA
* * * * * ***
107929936 TTCGTTATTGTAGTTTCAATCTATTCCACTACAACTTTAAGGATATAGGGTTTGTAGTTTTTTCT
66 TCCGCTATGGTAGTTTCAATCTATCCCACTACAACTTTAAGGATATAGGATTTGTAGTTCAATCT
* * * ** *
107930001 TGCTCCACTGTAACTTCAGAGAGATAAGATTTGCAATTGTAATTTTATTCCGACCCCCTACAACT
131 TGCTCCACTGCAACTTCAGAGAGATAAGATTGGCAATGGTAA-TTTAAACCGACCCACTACAACT
107930066 TCAAGGGTATAGGAATTGTAGCTTTAATCTGATTCAC
195 TCAAGGGTATAGGAATTGTAGCTTTAATCTGATTCAC
* * *
107930103 TGCAACTTCAGGAATATAGAATTTGCAGCTTTATCTTACTCCACTACAGCTTCAAGAAGATAAAA
1 TGCAACTTCAGGAATATAGAACTTGCAGCTTCATCTTACTCCACTACAACTTCAAGAAGATAAAA
*
107930168 TCCGCTATGGTAGTTTCAATTTGA-CCCACTACAACTTTAGAGG-TATAGGATTTGTAGCTTCAA
66 TCCGCTATGGTAGTTTCAATCT-ATCCCACTACAACTTTA-AGGATATAGGATTTGTAG-TTCAA
* * * *
107930231 TCTT-CTCCATTGCAACTTCAGAGAGGTAAGATTGGCTATGGTAGA-TTAAACCTGACCCACTGC
128 TCTTGCTCCACTGCAACTTCAGAGAGATAAGATTGGCAATGGTA-ATTTAAACC-GACCCACTAC
*
107930294 AACTTCAAGGGTGTAGGA
191 AACTTCAAGGGTATAGGA
107930312 TTCATAACTT
Statistics
Matches: 172, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
231 5 0.03
232 156 0.91
233 11 0.06
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (231 bp):
TGCAACTTCAGGAATATAGAACTTGCAGCTTCATCTTACTCCACTACAACTTCAAGAAGATAAAA
TCCGCTATGGTAGTTTCAATCTATCCCACTACAACTTTAAGGATATAGGATTTGTAGTTCAATCT
TGCTCCACTGCAACTTCAGAGAGATAAGATTGGCAATGGTAATTTAAACCGACCCACTACAACTT
CAAGGGTATAGGAATTGTAGCTTTAATCTGATTCAC
Found at i:107931877 original size:24 final size:24
Alignment explanation
Indices: 107931850--107931898 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
107931840 CTGACATATG
107931850 ATCTTTTTCTTCAAGAATTTGCTA
1 ATCTTTTTCTTCAAGAATTTGCTA
107931874 ATCTTTTTCTTCAAGAATTTGCTA
1 ATCTTTTTCTTCAAGAATTTGCTA
107931898 A
1 A
107931899 CTATTGACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (24 bp):
ATCTTTTTCTTCAAGAATTTGCTA
Found at i:107943182 original size:2 final size:2
Alignment explanation
Indices: 107943169--107943199 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
107943159 TAAAACATAC
*
107943169 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107943200 CATGACATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:107943712 original size:11 final size:11
Alignment explanation
Indices: 107943696--107943725 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
107943686 TAACATTAAG
107943696 AATATATATAT
1 AATATATATAT
*
107943707 AATATAAATAT
1 AATATATATAT
107943718 AATATATA
1 AATATATA
107943726 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:107944571 original size:14 final size:14
Alignment explanation
Indices: 107944554--107944586 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
107944544 TTGGGGTAAG
107944554 TTTTTCTTT-TTCTT
1 TTTTTCTTTGTT-TT
107944568 TTTTTCTTTGTTTT
1 TTTTTCTTTGTTTT
107944582 TTTTT
1 TTTTT
107944587 TGGGTTAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (14 bp):
TTTTTCTTTGTTTT
Found at i:107945340 original size:88 final size:83
Alignment explanation
Indices: 107945233--107945810 Score: 290
Period size: 88 Copynumber: 7.0 Consensus size: 83
107945223 AACAGACATT
** * *
107945233 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
107945298 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
107945321 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
107945385 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
107945404 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
107945465 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
107945487 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
107945552 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * * *
107945575 AAAAATAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
107945640 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
107945658 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
107945718 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
107945735 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
107945796 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
107945811 CATAAATTAA
Statistics
Matches: 383, Mismatches: 70, Indels: 84
0.71 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 114 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:107945437 original size:30 final size:30
Alignment explanation
Indices: 107945401--107945462 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
107945391 TTTTGAAAAA
107945401 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
107945431 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
107945461 CA
1 CA
107945463 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:107945782 original size:77 final size:75
Alignment explanation
Indices: 107945612--107945950 Score: 352
Period size: 71 Copynumber: 4.5 Consensus size: 75
107945602 ATGTAACCCG
* * * *
107945612 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTG--AAAATACCT
* *
107945677 CAGTGTGTGATCTGA
63 CA--GCGTGATCTCA
* *
107945692 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
*
107945756 GCGCATGAGC-CA
65 GCG--TGATCTCA
* * * * *
107945768 AGGGTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGAAAACATAAATTAAAAATACCTCAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
**
107945832 CGTG-TCTTG
66 CGTGATCTCA
** * *
107945841 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAG-AATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
* *
107945903 CGTG-TCCCG
66 CGTGATCTCA
107945912 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
107945951 TTTTAAAGGC
Statistics
Matches: 221, Mismatches: 31, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
71 51 0.23
72 12 0.05
73 34 0.15
75 21 0.10
76 12 0.05
77 42 0.19
78 3 0.01
79 45 0.20
80 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
CGTGATCTCA
Found at i:107945922 original size:71 final size:72
Alignment explanation
Indices: 107945586--107945949 Score: 345
Period size: 79 Copynumber: 4.9 Consensus size: 72
107945576 AAAATAGATT
* * *
107945586 TTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTT
1 TTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* *
107945650 TGAAAAATATAAA
62 TG-AAAACA-GAA
* * * *
107945663 TTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTG--AAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
107945728 TTGAAAGATAGAAA
61 TTGAAA-ACAG-AA
* ** * * *
107945742 TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTG
1 TTGAAAATACCTCAGCG--TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
107945807 AAAACATAAA
64 AAAACA-GAA
* * ** ** *
107945817 TTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAA
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
107945881 AACAGAA
66 AACAGAA
*
107945888 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
107945950 TTTTTAAAGG
Statistics
Matches: 236, Mismatches: 42, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
71 51 0.22
72 15 0.06
73 30 0.13
75 18 0.08
76 10 0.04
77 45 0.19
78 3 0.01
79 63 0.27
80 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (72 bp):
TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AACAGAA
Found at i:107946098 original size:74 final size:75
Alignment explanation
Indices: 107945976--107946136 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
107945966 TTGAAAAATG
107945976 GAAATTGAAAATACCTCGACGTTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
1 GAAATTGAAAATACCTCGACGTTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
107946041 TTTGACAACA
66 TTTGACAACA
* * *
107946051 GAAATTGAAATTACCTC-AGCG-TG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 GAAATTGAAAATACCTCGA-CGTTGAT-CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACT
107946113 TTTTTGA-AAGGCA
64 TTTTTGACAA--CA
*
107946126 AAAATTGAAAA
1 GAAATTGAAAA
107946137 ACGAAATTGA
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
73 3 0.04
74 45 0.58
75 29 0.38
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:107946125 original size:164 final size:165
Alignment explanation
Indices: 107945814--107946459 Score: 881
Period size: 163 Copynumber: 4.0 Consensus size: 165
107945804 TTGAAAACAT
* * * ** *
107945814 AAATTAAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATT
1 AAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATATT
*
107945876 TTGAAAACAG-AATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
66 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
107945940 TTGATTTTTTTTTTTAAAGGCAGAAATTGAAAAATGG
131 TTGA--TTTTTTTTGAAAGGCAGAAATTGAAAAATGG
* *
107945977 AAATTGAAAATACCTCGACGT-TGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
1 AAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TAT
*
107946041 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
65 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
107946106 GTTGA-TTTTTTTGAAAGGCAAAAATTGAAAAA-CG
130 GTTGATTTTTTTTGAAAGGCAGAAATTGAAAAATGG
* * * *
107946140 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTC-CAATACGAGTTGATTTT
1 AAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TAT
* *
107946204 TTTGACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
65 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
107946269 GTTGATTTTTTTTGAAAGACAG-AATTGAAAAATGG
130 GTTGATTTTTTTTGAAAGGCAGAAATTGAAAAATGG
* * *
107946304 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGAAATT
1 AAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATATT
*** * *
107946369 AAAACATA-A-AAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATATGA
66 TTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
107946431 GTTGA-TTTTTTTGACAA--CAGAAATTGAAA
130 GTTGATTTTTTTTGA-AAGGCAGAAATTGAAA
107946460 TTACCTCAGC
Statistics
Matches: 439, Mismatches: 32, Indels: 26
0.88 0.06 0.05
Matches are distributed among these distances:
160 3 0.01
161 17 0.04
162 37 0.08
163 155 0.35
164 145 0.33
165 14 0.03
166 11 0.03
167 57 0.13
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (165 bp):
AAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATATT
TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTTGAAAGGCAGAAATTGAAAAATGG
Found at i:107946219 original size:88 final size:87
Alignment explanation
Indices: 107946051--107946223 Score: 242
Period size: 88 Copynumber: 2.0 Consensus size: 87
107946041 TTTGACAACA
* * *
107946051 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
107946116 TTGAAAGGCAAAAATTGAAAAAC
66 TTGAAA-GCAAAAATTGAAAAAC
* *
107946139 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTC-CAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
*
107946203 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCAAAAATTGAAA
107946224 TTACCCCAGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
88 33 0.43
89 21 0.28
90 22 0.29
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (87 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGAAAGCAAAAATTGAAAAAC
Found at i:107946277 original size:74 final size:75
Alignment explanation
Indices: 107946139--107946298 Score: 209
Period size: 75 Copynumber: 2.1 Consensus size: 75
107946129 ATTGAAAAAC
* * * * *
107946139 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTC-CAATACGAGTTGATTT
1 GAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
107946203 TTTTGACA-ACA
64 TTTTGACAGACA
*
107946214 GAAATTGAAATTACCCCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
107946279 TTTGAAAGACA
65 TTTGACAGACA
107946290 G-AATTGAAA
1 GAAATTGAAA
107946299 AATGGAAATT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
73 20 0.27
74 12 0.16
75 39 0.52
76 4 0.05
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGACAGACA
Found at i:107946426 original size:71 final size:71
Alignment explanation
Indices: 107946304--107946734 Score: 285
Period size: 71 Copynumber: 6.0 Consensus size: 71
107946294 TGAAAAATGG
* * * * *
107946304 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGAAATT
1 AAATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATT
107946369 AAAACATAA
64 AAAACA-AA
** *
107946378 AAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-AATTA
**
107946442 TGACAACA
65 AAACAA-A
* * * **
107946450 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-CAATATGAGTTGATTTT
1 -AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-AGCAATATGAGTTGAAATT
** *
107946514 GAAAAGTAG
64 -AAAACAAA
*** * * *** * ** * * * *
107946523 AAATT-AAAA-GGTTCAACCT-ACCTCTCGCAATATGAGTTGA-TTCTTG-AACA--ACG-T-AA
1 AAATTGAAAATACCTCAGCGTGA-C-C-CG-AGGCTCAACTCACCTCTAGCAATATGA-GTTGAA
*
107946579 ATTGAAAAC-AG
61 ATT-AAAACAAA
* *
107946590 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTAA
107946655 AACACAA
66 AACA-AA
**
107946662 AAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATT-A
107946726 AAACAAA
65 AAACAAA
107946733 AA
1 AA
107946735 TTAAAAGGCT
Statistics
Matches: 273, Mismatches: 60, Indels: 51
0.71 0.16 0.13
Matches are distributed among these distances:
66 5 0.02
67 12 0.04
68 16 0.06
69 9 0.03
70 15 0.05
71 85 0.31
72 47 0.17
73 30 0.11
74 53 0.19
75 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (71 bp):
AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTAA
AACAAA
Found at i:107946887 original size:70 final size:69
Alignment explanation
Indices: 107946740--107947001 Score: 316
Period size: 70 Copynumber: 3.8 Consensus size: 69
107946730 AAAAATTAAA
* * * * * * *
107946740 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACTTCAGCAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACA-AAAATTAAAATACCTCAGCGT
107946803 GCCCG
65 GCCCG
* *
107946808 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAATACCTCAACGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAATACCTCAGCGTG
**
107946873 TCTTG
66 -CCCG
* *
107946878 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATT-AAAATACCTCAGCG
107946941 TGCCCCG
64 TG-CCCG
*
107946948 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
107947002 GGCTTAATTC
Statistics
Matches: 165, Mismatches: 21, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
68 31 0.19
69 31 0.19
70 85 0.52
71 4 0.02
72 11 0.07
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAATACCTCAGCGTG
CCCG
Found at i:107946992 original size:261 final size:255
Alignment explanation
Indices: 107946580--107947168 Score: 975
Period size: 261 Copynumber: 2.3 Consensus size: 255
107946570 ACAACGTAAA
* * * * * *
107946580 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
107946645 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAA
107946710 TATGAGTTGATTTTGAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
129 TATGAGTTGATTTTGAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
* *
107946775 AAAACATAAACTAAAAATACTTCAGCATG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
194 -----A-AAACTAAAAATACCTCAACATGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
107946839 ATT
253 ATT
107946842 TTGAAAACAAAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
107946906 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAAT
*
107946971 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAATTCACCTCTCGCAATATGAGTCAATTT
130 ATGAGTTGATTTTG-AAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
107947036 AAAACTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
194 AAAACTAAAAATACCTCAACATGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
107947098 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
107947163 TTGATT
66 TTGATT
107947169 TTCCTTGAAA
Statistics
Matches: 313, Mismatches: 10, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
255 19 0.06
256 53 0.17
257 55 0.18
259 34 0.11
260 41 0.13
261 97 0.31
262 14 0.04
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (255 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTGATTTTGAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAA
AACTAAAAATACCTCAACATGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:107951542 original size:44 final size:45
Alignment explanation
Indices: 107951452--107951580 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
107951442 GACAGAACGA
*
107951452 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
107951498 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
107951542 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
107951581 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:107958839 original size:46 final size:44
Alignment explanation
Indices: 107958780--107958894 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
107958770 ACAGGACAGA
* *
107958780 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
107958826 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
107958870 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
107958895 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:107958875 original size:44 final size:45
Alignment explanation
Indices: 107958780--107958913 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
107958770 ACAGGACAGA
* *
107958780 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
107958826 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
107958870 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
107958914 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:107963651 original size:14 final size:14
Alignment explanation
Indices: 107963632--107963661 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
107963622 AAATCAAAGG
107963632 GATGGAGATTTAGA
1 GATGGAGATTTAGA
107963646 GATGGAGATTTAGA
1 GATGGAGATTTAGA
107963660 GA
1 GA
107963662 AGCAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.27
Consensus pattern (14 bp):
GATGGAGATTTAGA
Found at i:107963748 original size:14 final size:14
Alignment explanation
Indices: 107963729--107963758 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
107963719 AATGGTGGAA
*
107963729 GGATTTTGATTTGG
1 GGATTTCGATTTGG
107963743 GGATTTCGATTTGG
1 GGATTTCGATTTGG
107963757 GG
1 GG
107963759 GAAAAATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.40, T:0.43
Consensus pattern (14 bp):
GGATTTCGATTTGG
Found at i:107963803 original size:13 final size:13
Alignment explanation
Indices: 107963787--107963820 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
107963777 TGGGGATACC
107963787 GATTTTAGGAGGA
1 GATTTTAGGAGGA
*
107963800 GATTTTAGGGGGA
1 GATTTTAGGAGGA
*
107963813 AATTTTAG
1 GATTTTAG
107963821 ACGTCCCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (13 bp):
GATTTTAGGAGGA
Found at i:107965238 original size:21 final size:22
Alignment explanation
Indices: 107965202--107965242 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
107965192 TGTTTTTTGG
107965202 AGTTTAGGGTTTTAGGGGTTAT
1 AGTTTAGGGTTTTAGGGGTTAT
*
107965224 AGTTTAGTG-TTTAGGGGTT
1 AGTTTAGGGTTTTAGGGGTT
107965243 TTTAGAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (22 bp):
AGTTTAGGGTTTTAGGGGTTAT
Found at i:107965392 original size:40 final size:40
Alignment explanation
Indices: 107965329--107965414 Score: 122
Period size: 40 Copynumber: 2.1 Consensus size: 40
107965319 ATTATATGAC
*
107965329 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCT-GT
*
107965370 TTTTAGC-GCGTTTT-TCCAAAAGCGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTAT-CAAAAGCGCCGCTAATGCTCTGT
107965409 TTTTAG
1 TTTTAG
107965415 TTAAAACGCC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
39 9 0.21
40 26 0.62
41 7 0.17
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCTGT
Found at i:107965763 original size:24 final size:26
Alignment explanation
Indices: 107965709--107965777 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
107965699 ATTGTTATCG
* * * *
107965709 TATAAAAGTAAAATGAATTATTACAT
1 TATAAAATTAAAATCATTTATAACAT
107965735 T-TAAAATTAAAAT-ATTTATAAC-T
1 TATAAAATTAAAATCATTTATAACAT
107965758 TATAAAATTCAAAATCATTT
1 TATAAAATT-AAAATCATTT
107965778 GAATCCATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 2 0.05
24 14 0.38
25 16 0.43
26 5 0.14
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (26 bp):
TATAAAATTAAAATCATTTATAACAT
Found at i:107966714 original size:15 final size:15
Alignment explanation
Indices: 107966696--107966727 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
107966686 AATGAGCTCG
107966696 AAAAATATGAGTCTA
1 AAAAATATGAGTCTA
*
107966711 AAAAATTTGAGTCTA
1 AAAAATATGAGTCTA
107966726 AA
1 AA
107966728 GTAAGTCCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.28
Consensus pattern (15 bp):
AAAAATATGAGTCTA
Found at i:107979162 original size:27 final size:29
Alignment explanation
Indices: 107979100--107979162 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 29
107979090 AAATAGAGGT
*
107979100 TGAGATTTAAGTTGTAGATGAATTATATA
1 TGAGGTTTAAGTTGTAGATGAATTATATA
*
107979129 TGTGGTTTAAG-TGTA-ATGAATTATA-A
1 TGAGGTTTAAGTTGTAGATGAATTATATA
107979155 TGAAGGTT
1 TG-AGGTT
107979163 ATCTAGCAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.10
27 14 0.47
28 4 0.13
29 9 0.30
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (29 bp):
TGAGGTTTAAGTTGTAGATGAATTATATA
Found at i:107979855 original size:2 final size:2
Alignment explanation
Indices: 107979850--107979896 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
107979840 TTTTTTAACA
107979850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107979892 AT AT A
1 AT AT A
107979897 CACGTTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:107980286 original size:27 final size:27
Alignment explanation
Indices: 107980249--107980310 Score: 124
Period size: 27 Copynumber: 2.3 Consensus size: 27
107980239 TTAAGATATT
107980249 AAAAAAATATTTTTTAATATTTTTTGA
1 AAAAAAATATTTTTTAATATTTTTTGA
107980276 AAAAAAATATTTTTTAATATTTTTTGA
1 AAAAAAATATTTTTTAATATTTTTTGA
107980303 AAAAAAAT
1 AAAAAAAT
107980311 TAATTGGTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (27 bp):
AAAAAAATATTTTTTAATATTTTTTGA
Found at i:107982624 original size:21 final size:21
Alignment explanation
Indices: 107982595--107982647 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
107982585 TTGAATTTTT
* *
107982595 AATTTTTTTTAATAAAAGT-TG
1 AATTTTTTATAA-AAAATTATG
107982616 TAATTTTTTATAAAAAATTATG
1 -AATTTTTTATAAAAAATTATG
107982638 AATTTTTTAT
1 AATTTTTTAT
107982648 TTTTATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.55
Consensus pattern (21 bp):
AATTTTTTATAAAAAATTATG
Found at i:107982631 original size:20 final size:22
Alignment explanation
Indices: 107982599--107982647 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
107982589 ATTTTTAATT
* *
107982599 TTTTTTA-ATAAAAGTTGT-AA
1 TTTTTTATATAAAAATTATGAA
107982619 TTTTTTATA-AAAAATTATGAA
1 TTTTTTATATAAAAATTATGAA
107982640 TTTTTTAT
1 TTTTTTAT
107982648 TTTTATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (22 bp):
TTTTTTATATAAAAATTATGAA
Found at i:107982652 original size:27 final size:29
Alignment explanation
Indices: 107982620--107982682 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 29
107982610 AAGTTGTAAT
*
107982620 TTTTTATAAAAAATTAT-GAATTTTT-TA
1 TTTTTATAAAAAATTATAAAATTTTTATA
* *
107982647 TTTTTATGAAATATTATAAAATTTTTATA
1 TTTTTATAAAAAATTATAAAATTTTTATA
107982676 TTTTTAT
1 TTTTTAT
107982683 TATATACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 15 0.48
28 7 0.23
29 9 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTTATAAAAAATTATAAAATTTTTATA
Found at i:107983086 original size:15 final size:16
Alignment explanation
Indices: 107983068--107983100 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
107983058 TATTTTAACC
*
107983068 TTATTATTTTT-TAAT
1 TTATAATTTTTATAAT
107983083 TTATAATTTTTATAAT
1 TTATAATTTTTATAAT
107983099 TT
1 TT
107983101 TCATAAGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATAATTTTTATAAT
Found at i:107988405 original size:18 final size:18
Alignment explanation
Indices: 107988378--107988421 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
107988368 TACATCCAAT
107988378 ACAA-CCAATTAAACCCA
1 ACAACCCAATTAAACCCA
* *
107988395 ATAACCCAATTTAACCCA
1 ACAACCCAATTAAACCCA
107988413 ACAACCCAA
1 ACAACCCAA
107988422 GCTACCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAACCCAATTAAACCCA
Found at i:107988837 original size:2 final size:2
Alignment explanation
Indices: 107988830--107988854 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
107988820 CCTATTTTCT
107988830 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
107988855 TAAAACATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107988864 original size:20 final size:20
Alignment explanation
Indices: 107988849--107988889 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
107988839 ATATATATAT
*
107988849 ATATATTAAAACATATAAAA
1 ATATAATAAAACATATAAAA
* *
107988869 ATATAATAAAATAAATAAAA
1 ATATAATAAAACATATAAAA
107988889 A
1 A
107988890 AAGGGGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (20 bp):
ATATAATAAAACATATAAAA
Found at i:107990064 original size:21 final size:22
Alignment explanation
Indices: 107990034--107990104 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 22
107990024 TATATTATCC
107990034 ATGTTATTATTAATATTA-GTAT
1 ATGTT-TTATTAATATTAGGTAT
*
107990056 ATGTTTTATT-AT-TTATGTAT
1 ATGTTTTATTAATATTAGGTAT
* *
107990076 ATATCTTTAATACATA-TAGGTAT
1 ATGT-TTTATTA-ATATTAGGTAT
107990099 ATGTTT
1 ATGTTT
107990105 ATGTAATGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
19 3 0.08
20 9 0.22
21 10 0.25
22 7 0.17
23 11 0.28
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (22 bp):
ATGTTTTATTAATATTAGGTAT
Found at i:107991678 original size:33 final size:34
Alignment explanation
Indices: 107991636--107991702 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
107991626 TAATTATGTG
107991636 TTGTTTTGTCTTCTCTTCTAC-TTTTTATTTTTT
1 TTGTTTTGTCTTCTCTTCTACTTTTTTATTTTTT
107991669 TTGTTTTGTCTTCTCTTCTACTTTTTTATTTTTT
1 TTGTTTTGTCTTCTCTTCTACTTTTTTATTTTTT
107991703 AAATATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 21 0.64
34 12 0.36
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.73
Consensus pattern (34 bp):
TTGTTTTGTCTTCTCTTCTACTTTTTTATTTTTT
Found at i:107994112 original size:40 final size:39
Alignment explanation
Indices: 107994067--107994274 Score: 191
Period size: 40 Copynumber: 5.2 Consensus size: 39
107994057 CGGAATACAA
*
107994067 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
107994107 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
107994147 CCAGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
107994187 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * * *
107994227 CCGGATTTAACTACTAGCATAAATGTCTTCAGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
107994267 CCGGATAT
1 CCGGATAT
107994275 CATTTAATTG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:107994215 original size:80 final size:81
Alignment explanation
Indices: 107994082--107994272 Score: 226
Period size: 80 Copynumber: 2.4 Consensus size: 81
107994072 TATAACCACA
* *
107994082 TGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAATGCCTTCGGGTATTAG
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAA
107994146 CCCAGATTTAACAACT
66 CCCAGATTTAACAACT
* * * *
107994162 TGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAATTGCCTTCGGGTCTTA
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAATGCCTTCGGGTATTA
* *
107994225 ACCCGGATTTAACTACT
65 ACCCAGATTTAACAACT
* ** * * *
107994242 AGCATAAATGTCTTCAGGACTTAGCCCGGAT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGAT
107994273 ATCATTTAAT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 90 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (81 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAA
CCCAGATTTAACAACT
Found at i:108002073 original size:40 final size:39
Alignment explanation
Indices: 108002028--108002235 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
108002018 CGGAATACAA
*
108002028 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
108002068 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
108002108 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
108002148 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
108002188 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
108002228 CCGGATAT
1 CCGGATAT
108002236 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:108002175 original size:80 final size:81
Alignment explanation
Indices: 108002028--108002233 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
108002018 CGGAATACAA
* * * *
108002028 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
108002092 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
108002108 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
108002171 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
108002188 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
108002234 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:108023863 original size:46 final size:46
Alignment explanation
Indices: 108023683--108023898 Score: 174
Period size: 46 Copynumber: 4.7 Consensus size: 46
108023673 CATTTGTGCT
* * * *
108023683 CTAGTGTAAGACATGTCTGGGACATGCATTGGCCA-CATTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGAGAG
* ** * *
108023729 CCAGTACAAGACCATGTCTGGGACATGGCAACGGC-ATTGAGACGAGAG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGATGAGAG
* * * * *
108023777 CTAGTGTAAGATATGTCTGGGATATGCATCGACCT-CGAGATGTA-AA
1 CTAGTGTAAGACATGTCTGGGACATGCATCG-GCTATGAGATG-AGAG
* *
108023823 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTG-T
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGAG
108023868 C-AGTGTAAGACAATGTCTGGGACATGGCATC
1 CTAGTGTAAGAC-ATGTCTGGGACAT-GCATC
108023899 AGCTTCGATT
Statistics
Matches: 135, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 59 0.44
47 29 0.21
48 20 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGAG
Found at i:108023980 original size:96 final size:93
Alignment explanation
Indices: 108023825--108023996 Score: 238
Period size: 96 Copynumber: 1.8 Consensus size: 93
108023815 GATGTAAACT
* ** * * *
108023825 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTCAGTGTAAGACAATGTCTGGGA
1 AGTGTAAGACATGTCTAGGACATGCATCAACTATGAGATGAGCCAGTGTAAGACAATGTCTGGAA
108023890 CATGGCATCAGCTTCGATTTCGATAGTC
66 CATGGCATCAGCTTCGATTTCGATAGTC
*
108023918 AGTGTAAGACCATGTCTAGGACATGGCATCAACT-TGATGGATGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAACTATGA--GATGAGCCAGTGTAAGACAATGTCT
108023982 GGAACATGGCATCAG
62 GGAACATGGCATCAG
108023997 TATTACACCC
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
93 9 0.13
94 16 0.24
95 7 0.10
96 36 0.53
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCATCAACTATGAGATGAGCCAGTGTAAGACAATGTCTGGAA
CATGGCATCAGCTTCGATTTCGATAGTC
Found at i:108023989 original size:47 final size:47
Alignment explanation
Indices: 108023825--108023996 Score: 201
Period size: 49 Copynumber: 3.7 Consensus size: 47
108023815 GATGTAAACT
* *
108023825 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-ATGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGATG-GATGAGTC
* *
108023869 AGTGTAAGACAATGTCTGGGACATGGCATCAGCTTCGATTTCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTT-GA--TGGATGAGTC
* * *
108023918 AGTGTAAGACCATGTCTAGGACATGGCATCAACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGATGGATGAGTC
*
108023965 AGTGTAAGACCATGTCTGGAACATGGCATCAG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG
108023997 TATTACACCC
Statistics
Matches: 108, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
44 9 0.08
45 13 0.12
46 11 0.10
47 33 0.31
48 2 0.02
49 36 0.33
50 3 0.03
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGATGGATGAGTC
Found at i:108027338 original size:14 final size:14
Alignment explanation
Indices: 108027319--108027347 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
108027309 ATTTTTTGAG
108027319 AAAATTTATATTAA
1 AAAATTTATATTAA
108027333 AAAATTTATATTAA
1 AAAATTTATATTAA
108027347 A
1 A
108027348 CTCAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATTTATATTAA
Found at i:108034518 original size:12 final size:12
Alignment explanation
Indices: 108034501--108034530 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
108034491 TCAGTGAGTT
108034501 ACACGGCCTAGC
1 ACACGGCCTAGC
*
108034513 ACACGGCCTGGC
1 ACACGGCCTAGC
108034525 ACACGG
1 ACACGG
108034531 GCGTATAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:108036380 original size:93 final size:93
Alignment explanation
Indices: 108036268--108036439 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
108036258 CGCCCATAAG
* *
108036268 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
108036333 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
108036361 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
108036426 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
108036440 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.