Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 346 of 438
Found at i:108036436 original size:46 final size:46
Alignment explanation
Indices: 108036261--108036436 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
108036251 TGTAACCCGC
* * *
108036261 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
108036307 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
108036357 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
108036400 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
108036437 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:108041482 original size:40 final size:39
Alignment explanation
Indices: 108041291--108041475 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
108041281 TCGAATGATG
* * * *
108041291 TCCGGGCTAAGTCCCGAAGG-ATTTGTGCTAAGTGACCATA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
108041331 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCT-AG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
108041371 TCCGGGCTAAACCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
108041410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
108041451 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTA-GTCCCGAAGGCATTTG
108041476 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:108041497 original size:79 final size:79
Alignment explanation
Indices: 108041344--108041508 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
108041334 GGACTAAGAT
* **
108041344 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAACCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAACCCGAAGGCATTGGAACGAGTTACTAA
*
108041409 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
** *
108041423 CCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTA-AACCCGAAGGCATTGGAACGAGTTA-C
* *
108041486 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
108041502 CCGAAGG
1 CCGAAGG
108041509 TACATGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 48 0.65
80 26 0.35
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAACCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:108044240 original size:24 final size:24
Alignment explanation
Indices: 108044189--108044241 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
108044179 ATTATATATA
** *
108044189 TATATATATATGTGTATGTGTGTG
1 TATATATATATGACTATGTATGTG
108044213 TATATATATATGACT-TGTATGTG
1 TATATATATATGACTATGTATGTG
108044236 T-TATAT
1 TATATAT
108044242 GAGCATGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 5 0.19
23 8 0.31
24 13 0.50
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (24 bp):
TATATATATATGACTATGTATGTG
Found at i:108047766 original size:17 final size:18
Alignment explanation
Indices: 108047741--108047775 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
108047731 AGGCCACATA
*
108047741 CAGATGTGGTTA-CGTGG
1 CAGAGGTGGTTATCGTGG
108047758 CAGAGGTGGTTATCGTGG
1 CAGAGGTGGTTATCGTGG
108047776 TAAAGGAGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.17, C:0.11, G:0.43, T:0.29
Consensus pattern (18 bp):
CAGAGGTGGTTATCGTGG
Found at i:108051121 original size:10 final size:11
Alignment explanation
Indices: 108051097--108051127 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
108051087 TTGTGCTCAG
108051097 TTTATTTTTTC
1 TTTATTTTTTC
108051108 TTTATTTTTT-
1 TTTATTTTTTC
108051118 TTTATTTTTT
1 TTTATTTTTT
108051128 GTTGAGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTATTTTTTC
Found at i:108057202 original size:72 final size:72
Alignment explanation
Indices: 108057085--108057225 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 72
108057075 GCCCCCCGAT
*
108057085 GAGCCCGAGAAATTGTCATTGCCCGCAAAATCTGGATGATAAGAAGTATCAGCCGAAAGTGAATG
1 GAGCCCGAGAAATAGTCATTGCCCGCAAAATCTGGATGATAAGAAGTATCAGCCGAAAGTGAATG
108057150 CGATGAC
66 CGATGAC
* * * * *
108057157 GAGCCCGGGAAATAGTCATTGCCTGCCAAAT-TCGGATGATAAGAAGTATCAGTCGAATGTGAAT
1 GAGCCCGAGAAATAGTCATTGCCCGCAAAATCT-GGATGATAAGAAGTATCAGCCGAAAGTGAAT
108057221 GCGAT
65 GCGAT
108057226 CGCTCGGCCT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
71 1 0.02
72 61 0.98
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.21
Consensus pattern (72 bp):
GAGCCCGAGAAATAGTCATTGCCCGCAAAATCTGGATGATAAGAAGTATCAGCCGAAAGTGAATG
CGATGAC
Found at i:108059310 original size:22 final size:21
Alignment explanation
Indices: 108059282--108059323 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
108059272 TAGTACATAA
108059282 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
108059304 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
108059324 TAAATAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:108059599 original size:22 final size:21
Alignment explanation
Indices: 108059571--108059612 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
108059561 TAGTACATAA
108059571 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
108059593 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
108059613 TAAATAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:108059663 original size:15 final size:14
Alignment explanation
Indices: 108059643--108059706 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 14
108059633 ACTTTATTCA
108059643 TATTTTTTCGTATAT
1 TATTTTTTC-TATAT
*
108059658 TATTTTTTAAAATATAT
1 TATTTTTT---CTATAT
* *
108059675 TA-TTTTCCTATTT
1 TATTTTTTCTATAT
108059688 TATTTTTT-TATAT
1 TATTTTTTCTATAT
108059701 TATTTT
1 TATTTT
108059707 AGCAAAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 16 0.41
14 4 0.10
15 8 0.21
16 4 0.10
17 7 0.18
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.69
Consensus pattern (14 bp):
TATTTTTTCTATAT
Found at i:108059791 original size:155 final size:144
Alignment explanation
Indices: 108059095--108060297 Score: 1140
Period size: 145 Copynumber: 8.1 Consensus size: 144
108059085 ATAAGTAAAA
* *
108059095 TATTTTCGTATATTA-TTTTTTATATTATTTTAGCAAAAATAT-TTT-AAATGTATTATGTAAGT
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAA-ATGTTTCAAATGTATTATTTAA-T
*
108059157 ATTTTTTTATATTAATTTAATAAATAACACTGATTTT-GACACTTT-TTCGTATTTTTTTCGTAT
64 A-TTTTTTATATTAATTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTA-TTTTTTCGTAT
*
108059220 CTT-TTTTTT-AAATATAT
126 ATTATTTTTTAAAATATAT
* * * * * * *
108059237 TACTTTCGTA--TTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATT
1 TATTTTCGTATTTTATTT--TTTT-ATA---TTATTTTAGCAAAAAATGTTTCAAATGTATTATT
* ** ** *
108059300 TAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTA-TCATATTTTTTCGT
60 TAA-TATTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTCGT
108059364 ATATTATTTTTTAAAATATAT
124 ATATTATTTTTTAAAATATAT
* * *
108059385 TATTTTCCTATTTTA-TTTTTTATATTATTTTAGC-AAAAATGTTTTAAATGTATTATGTAAGTA
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAA-TA
* *
108059448 TTTTTTTATATTAATTTAATAAATAACACTGATTTT-GACAC-TT-TTCGTATTTTTTTCGTATC
65 -TTTTTTATATTAATTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTA-TTTTTTCGTATA
108059510 TT-TTTTTT-AAATATAT
127 TTATTTTTTAAAATATAT
* * * * * * *
108059526 TACTTTCGTA--TTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATT
1 TATTTTCGTATTTTATTT--TTTT-ATA---TTATTTTAGCAAAAAATGTTTCAAATGTATTATT
* ** ** *
108059589 TAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTCGT
60 TAA-TATTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTCGT
108059654 ATATTATTTTTTAAAATATAT
124 ATATTATTTTTTAAAATATAT
*
108059675 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATT
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTAT-T-TA--
* *
108059740 ATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTT-GACACTTTTTTCGTATTTT
62 A--T-A----TTTTTTATATTAATTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTATTTT
* *
108059804 TTTGTATCTTATTTTTTAAAATATAT
119 TTCGTATATTATTTTTTAAAATATAT
* * * * *
108059830 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAATA
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTT-AATA
*
108059895 TTTTTTATATT-TTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATAT
65 TTTTTTATATTAATTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTTTTTCGTATAT
108059959 TATTTTTTAAAATATAT
128 TATTTTTTAAAATATAT
* *** * *
108059976 TATTTTCTTATTTTA-TTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTG
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAA-TA
* * *
108060040 TTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTT-GATACTTTCTTCGTAATTTTTT
65 TTT-TTTATATTAA------TTTAATAAATAACCCTGATTTTAG-CACTTTATTCGT-A-----T
* *
108060104 TATTTTTGTATATTATTTTTTAATATATAT
116 T-TTTTCGTATATTATTTTTTAAAATATAT
* * * *
108060134 TATTTTCGTATTTTA-TTTTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAA-TA
* ** *
108060198 TTATTTATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCGTATTTTTTTCGTATATT
65 TTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTTTTTCGTATATT
108060263 ATTTTTTAAAATATAT
129 ATTTTTTAAAATATAT
*
108060279 TATTTTGGTATTTTATTTT
1 TATTTTCGTATTTTATTTT
108060298 AGCATAAAAT
Statistics
Matches: 881, Mismatches: 113, Indels: 130
0.78 0.10 0.12
Matches are distributed among these distances:
139 3 0.00
140 5 0.01
141 18 0.02
142 50 0.06
143 61 0.07
144 7 0.01
145 148 0.17
146 117 0.13
147 107 0.12
148 45 0.05
149 24 0.03
150 7 0.01
151 37 0.04
152 30 0.03
153 5 0.01
154 3 0.00
155 121 0.14
157 11 0.01
158 82 0.09
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (144 bp):
TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAATAT
TTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTCGTATATTAT
TTTTTAAAATATAT
Found at i:108059794 original size:145 final size:140
Alignment explanation
Indices: 108059095--108060297 Score: 657
Period size: 155 Copynumber: 8.1 Consensus size: 140
108059085 ATAAGTAAAA
* * *
108059095 TATTTTCGTATATTA-TTTTTTATATTATTTTAGCAAAAATAT-TTT-AAATGTATTATGT-AAG
1 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAA-ATGTTTCAAATGTATTATTTCAA-
* *
108059156 TATTTTTTTATATTAATTT-AATAAATAACACTGATTTT-GACACTTTTTCGTATTTTTTTCGTA
64 TA-TTTTTTATA-TAATTTCAATAAATAACCCTGATTTTAG-CAC--TATC---TTTTTTTCGTA
*
108059219 TCTT-TTTTTT-AAATATAT
121 TATTATTTTTTAAAATATAT
* * * * * * * *
108059237 TACTTTCGTA--TTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATT
1 TATTTTCCTATTTTATTT--TTTT-ATA---TTATTTTAGCAAAAAATGTTTCAAATGTATTATT
* ** ** *
108059300 T-AAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATCATATTTTTTCGT
60 TCAA-TATTTTTTATATAATTTCAATAAATAACCCTGATTTTAGCAC--TATC-T-TTTTTTCGT
108059364 ATATTATTTTTTAAAATATAT
120 ATATTATTTTTTAAAATATAT
* *
108059385 TATTTTCCTATTTTA-TTTTTTATATTATTTTAGC-AAAAATGTTTTAAATGTATTATGT-AAGT
1 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTCAA-T
* * *
108059447 ATTTTTTTATATTAATTT-AATAAATAACACTGATTTT-GACACTTTTCGTATTTTTTTCGTATC
65 A-TTTTTTATA-TAATTTCAATAAATAACCCTGATTTTAG-CAC-TATC---TTTTTTTCGTATA
108059510 TT-TTTTTT-AAATATAT
123 TTATTTTTTAAAATATAT
* * * * * * * *
108059526 TACTTTCGTA--TTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATT
1 TATTTTCCTATTTTATTT--TTTT-ATA---TTATTTTAGCAAAAAATGTTTCAAATGTATTATT
* ** ** *
108059589 T-AAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTCG
60 TCAA-TATTTTTTATATAATTTCAATAAATAACCCTGATTTTAGCAC--TA-TC-T-TTTTTTCG
108059653 TATATTATTTTTTAAAATATAT
119 TATATTATTTTTTAAAATATAT
108059675 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAT-AT
1 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTAT-T-TCA-
*
108059739 TATGTAAGTGTTTTTTTATACTAATTT-AATAAATAACCCTGATTTT-GACACTTTTTTCGTATT
63 -A--T-A----TTTTTTATA-TAATTTCAATAAATAACCCTGATTTTAG-CAC---TATC-T-TT
* *
108059802 TTTTTGTATCTTATTTTTTAAAATATAT
113 TTTTCGTATATTATTTTTTAAAATATAT
* * * * * *
108059830 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAATA
1 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTCAATA
**
108059895 TTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATT
66 TTTTTTATATAATTTCAATAAATAACCCTGATTTTAGCAC--TA-TC---TTTTTTTCGTATATT
108059960 ATTTTTTAAAATATAT
125 ATTTTTTAAAATATAT
* *** *
108059976 TATTTTCTTATTTTA-TTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATT-AACT
1 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTCAA-T
* * * * * *
108060039 GTTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTT-GATACTTTCTTCGTAATTTTT
65 ATTT-TTTATA-TAA-----TTTCAATAAATAACCCTGATTTTAG-CACTATCTT--T--TTTTC
* * **
108060103 TTATTTTTGTATATTATTTTTTAATATA-
118 GTA----TAT-TATT-TTTTAAAATATAT
* * * * *
108060131 TATTATTTTCGTATTTTA-TTTTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTT-A
1 TA-T-TTTCC-TATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTCA
* ** * *
108060194 AGTATTATTTATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCGTATTTTTTTCGTA
63 A-TATTTTTTATATAATTTCAATAAATAACCCTGATTTTAGCAC--TA-TC---TTTTTTTCGTA
108060259 TATTATTTTTTAAAATATAT
121 TATTATTTTTTAAAATATAT
**
108060279 TATTTTGGTATTTTATTTT
1 TATTTTCCTATTTTATTTT
108060298 AGCATAAAAT
Statistics
Matches: 850, Mismatches: 123, Indels: 172
0.74 0.11 0.15
Matches are distributed among these distances:
139 3 0.00
140 5 0.01
141 18 0.02
142 48 0.06
143 56 0.07
144 17 0.02
145 113 0.13
146 118 0.14
147 113 0.13
148 49 0.06
149 28 0.03
150 13 0.02
151 30 0.04
152 25 0.03
153 8 0.01
154 7 0.01
155 120 0.14
156 19 0.02
157 11 0.01
158 49 0.06
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (140 bp):
TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTCAATA
TTTTTTATATAATTTCAATAAATAACCCTGATTTTAGCACTATCTTTTTTTCGTATATTATTTTT
TAAAATATAT
Found at i:108060003 original size:12 final size:13
Alignment explanation
Indices: 108059971--108060006 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
108059961 TTTTTTAAAA
108059971 TATATTATTTTCT
1 TATATTATTTTCT
*
108059984 TATTTTATTTT-T
1 TATATTATTTTCT
108059996 TATATTATTTT
1 TATATTATTTT
108060007 AGCAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TATATTATTTTCT
Found at i:108060121 original size:13 final size:12
Alignment explanation
Indices: 108060103--108060164 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 12
108060093 CGTAATTTTT
108060103 TTATTTTTGTATA
1 TTATTTTT-TATA
108060116 TTATTTTTTAATA
1 TTATTTTTT-ATA
*
108060129 TATATTATTTTCGTATT
1 T-TA-T-TTTT--TATA
108060146 TTATTTTTTATA
1 TTATTTTTTATA
108060158 TTATTTT
1 TTATTTT
108060165 AGTACATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
12 11 0.27
13 12 0.29
14 6 0.15
15 2 0.05
16 6 0.15
17 3 0.07
18 1 0.02
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (12 bp):
TTATTTTTTATA
Found at i:108060139 original size:30 final size:28
Alignment explanation
Indices: 108060103--108060162 Score: 84
Period size: 30 Copynumber: 2.1 Consensus size: 28
108060093 CGTAATTTTT
*
108060103 TTATTTTTGTATATTATTTTTTAATATATA
1 TTATTTTCGTATATTATTTTTT-ATAT-TA
*
108060133 TTATTTTCGTATTTTATTTTTTATATTA
1 TTATTTTCGTATATTATTTTTTATATTA
108060161 TT
1 TT
108060163 TTAGTACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 4 0.14
29 4 0.14
30 20 0.71
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (28 bp):
TTATTTTCGTATATTATTTTTTATATTA
Found at i:108060146 original size:25 final size:25
Alignment explanation
Indices: 108060117--108060164 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
108060107 TTTTGTATAT
108060117 TATTTT-TTAATATATATTATTTTCG
1 TATTTTATT-ATATATATTATTTTCG
* *
108060142 TATTTTATTTTTTATATTATTTT
1 TATTTTATTATATATATTATTTT
108060165 AGTACATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (25 bp):
TATTTTATTATATATATTATTTTCG
Found at i:108060235 original size:303 final size:289
Alignment explanation
Indices: 108059095--108060297 Score: 1575
Period size: 303 Copynumber: 4.1 Consensus size: 289
108059085 ATAAGTAAAA
* * *
108059095 TATTTTCGTATATTATTTTTTATATTATTTTAGCAAAAATATTTTAAATGTATTATGTAAGTATT
1 TATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAATATTTCAAATGTATTATGTAAGTATT
108059160 TTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTTTT
66 TTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTTTT
*
108059225 TTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAA
131 TTTTAAATATATTACTTTCGTATTATTTAATTTTAAAA--CTTATTTTAGTACATAATGTTTCAA
*
108059290 ATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTA-TCAT
194 ATATATTATTTAAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCAT
108059354 ATTTTTTCGTATATTATTTTTTAAAATATAT
259 ATTTTTTCGTATATTATTTTTTAAAATATAT
* *
108059385 TATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAATGTTTTAAATGTATTATGTAAGTATT
1 TATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAATATTTCAAATGTATTATGTAAGTATT
108059450 TTTTTATATTAATTTAATAAATAACACTGATTTTGACAC-TTTTCGTATTTTTTTCGTATCTTTT
66 TTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTTTT
*
108059514 TTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAA
131 TTTTAAATATATTACTTTCGTATTATTTAATTTTAAAA--CTTATTTTAGTACATAATGTTTCAA
*
108059579 ATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCAT
194 ATATATTATTTAAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCAT
108059644 ATTTTTTCGTATATTATTTTTTAAAATATAT
259 ATTTTTTCGTATATTATTTTTTAAAATATAT
*
108059675 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATT
1 TATTTTCCTATTTTA-TTTTTTATATTATTTTAGC-AAAAATATTTCAAATGTATTATG--TA--
* *
108059740 ATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTT
60 A-GT-A---TTTTTTTATATTAATTTAATAAATAACACTGATTTTGACAC-TTTTTCGTATTTTT
* * * *
108059805 TT-GTATCTTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTCTTCATA-TTATTTTAGTA
119 TTCGTATCTT-TTTTTT-AAATATATTACTTTCGTATTATTTAATT-TTAAAACTTATTTTAGTA
* ** *
108059866 CATAATGTTTCAAATGTATTATTTCAA-TATTTTTTATATTTTTTCAATAAATAACCCTGATTTT
181 CATAATGTTTCAAATATATTATTT-AAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTT
*
108059930 AGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
245 AGCACTTTATTCATA-TTTTTTCGTATATTATTTTTTAAAATATAT
* * * * *
108059976 TATTTTCTTATTTTATTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAAT-TAACTG
1 TATTTTCCTATTTTATTTTTTATATTATTTTAGC-AAAAATATTTCAAATGTATT-ATGTAAGTA
* * * *
108060040 TTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTT
64 TTTTTTTATATTAA------TTTAATAAATAACACTGATTTTGACACTTT-TTCGT-A----TTT
* * * * * *
108060105 ATTTTTGTATATTATTTTTTAATATATATTATTTTCGTA-T-TTTATTTTTTATA-TTATTTTAG
117 -TTTTCGTATCTT-TTTTTTAA-ATATATTACTTTCGTATTATTTAATTTTAAAACTTATTTTAG
* * * *
108060167 TACATAATGCTTCAAATGTATTATTTAAGTATTATT-TATATTTTTTTAATAAATAACCCTAATT
179 TACATAATGTTTCAAATATATTATTTAAGTATT-TTAAATATTTTTTTAATAAATAACCCTGATT
*
108060231 TTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
243 TTAGCACTTTATTCATA-TTTTTTCGTATATTATTTTTTAAAATATAT
**
108060279 TATTTTGGTATTTTATTTT
1 TATTTTCCTATTTTATTTT
108060298 AGCATAAAAT
Statistics
Matches: 842, Mismatches: 34, Indels: 61
0.90 0.04 0.07
Matches are distributed among these distances:
289 150 0.18
290 151 0.18
291 31 0.04
292 22 0.03
294 2 0.00
295 1 0.00
296 5 0.01
297 32 0.04
298 4 0.00
300 117 0.14
301 87 0.10
302 18 0.02
303 166 0.20
304 56 0.07
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (289 bp):
TATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAATATTTCAAATGTATTATGTAAGTATT
TTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTTTT
TTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACTTATTTTAGTACATAATGTTTCAAAT
ATATTATTTAAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATAT
TTTTTCGTATATTATTTTTTAAAATATAT
Found at i:108060284 original size:591 final size:580
Alignment explanation
Indices: 108059145--108060323 Score: 1508
Period size: 591 Copynumber: 2.0 Consensus size: 580
108059135 ATTTTAAATG
*
108059145 TATTATGTAAGTATTTTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATT
1 TATTATGTAAGTATTTTTTTATACTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATT
108059210 TTTTTCGTATCTTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTAG
66 TTTTTCGTATCTTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAA--CTTATTTTAG
* * *
108059275 TACATAATGTTTTAAATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTT
129 TACATAATGTTTCAAATATATTATTTAAGTATTTTAAATATTTTTTCAATAAATAACCCTGATTT
108059340 TAGCACTTTATCATATTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTTT
194 TAGCACTTTATCATATTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTTT
*** * * *
108059405 TATATTATTTTAGCAAAAATGTTTTAAATGTATTATGTAAGTATTTTTTTATATTAATTTAATAA
259 TATATTATTTTAGCAAAAAAAATTCAAATGTATTATGTAACTATTTCTTTATATTAATTTAATAA
*
108059470 ATAACACTGATTTTGACACTTTTCGTATTTTTTTCGTATCTTTTTTTTAAATATATTACTTTCGT
324 ATAACACTGATTTTGACACTTTTCGTATTTTTTTCGTATATTTTTTTTAAATATATTACTTTCGT
* * *
108059535 ATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATTTAAGTGTTTTA
389 ATTATTTAATTTTAAAA--CTTATTTTAGTACATAATGCTTCAAATATATTATTTAAGTATTTTA
*
108059600 AATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTCGTATATTATTTTT
452 AATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCATATTTTTTCGTATATTATTTTT
** **
108059665 TAAAATATATTATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTAT
517 T-AAATATATTA---T--TA-TTTATTTTGGTATATTATTTTAGCAAAAAATCATTCAAATGTAT
108059730 TATGTA
575 TATGTA
* *
108059736 TATTATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTAT
1 TATTATGTAAGTATTTTTTTATACTAATTTAATAAATAACACTGATTTTGACAC-TTTTTCGTAT
* * * *
108059801 TTTTTT-GTATCTTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTCTTCATA-TTATTTT
65 TTTTTTCGTATCTT-TTTTTT-AAATATATTACTTTCGTATTATTTAATT-TTAAAACTTATTTT
* **
108059862 AGTACATAATGTTTCAAATGTATTATTTCAA-TATTTTTTATATTTTTTCAATAAATAACCCTGA
127 AGTACATAATGTTTCAAATATATTATTT-AAGTATTTTAAATATTTTTTCAATAAATAACCCTGA
* *
108059926 TTTTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCTTATTTTA
191 TTTTAGCACTTTA-TCATA-TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTA
*
108059991 TTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAAT-TAACTGTTTCTTTATATTAAG
254 TTTTTTATATTATTTTAGC-AAAAAAAATTCAAATGTATT-ATGTAACTATTTCTTTATATTAA-
* * * *
108060055 GGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTTATTTTTGTATATTAT
316 -----TTTAATAAATAACACTGATTTTGACAC-TT-TTCGT-A----TTT-TTTTCGTATATT-T
* * * *
108060120 TTTTTAATATATATTATTTTCGTA-T-TTTATTTTTTATA-TTATTTTAGTACATAATGCTTCAA
367 TTTTTAA-ATATATTACTTTCGTATTATTTAATTTTAAAACTTATTTTAGTACATAATGCTTCAA
* * *
108060182 ATGTATTATTTAAGTATTATT-TATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCG
431 ATATATTATTTAAGTATT-TTAAATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCA
* *
108060246 TATTTTTTTCGTATATTATTTTTT-AA-A-A-TA-TA-TTATTTTGGTATTTTATTTTAGCATAA
495 TA-TTTTTTCGTATATTATTTTTTAAATATATTATTATTTATTTTGGTATATTATTTTAGCAAAA
108060305 AATCATTCAAATGTATTAT
559 AATCATTCAAATGTATTAT
108060324 TTAAGTTTTT
Statistics
Matches: 517, Mismatches: 44, Indels: 54
0.84 0.07 0.09
Matches are distributed among these distances:
589 75 0.15
590 6 0.01
591 167 0.32
592 60 0.12
593 21 0.04
598 24 0.05
599 4 0.01
600 6 0.01
601 2 0.00
602 2 0.00
603 80 0.15
604 23 0.04
605 3 0.01
606 20 0.04
607 9 0.02
608 15 0.03
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (580 bp):
TATTATGTAAGTATTTTTTTATACTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATT
TTTTTCGTATCTTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACTTATTTTAGTA
CATAATGTTTCAAATATATTATTTAAGTATTTTAAATATTTTTTCAATAAATAACCCTGATTTTA
GCACTTTATCATATTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTTTTA
TATTATTTTAGCAAAAAAAATTCAAATGTATTATGTAACTATTTCTTTATATTAATTTAATAAAT
AACACTGATTTTGACACTTTTCGTATTTTTTTCGTATATTTTTTTTAAATATATTACTTTCGTAT
TATTTAATTTTAAAACTTATTTTAGTACATAATGCTTCAAATATATTATTTAAGTATTTTAAATA
TTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCATATTTTTTCGTATATTATTTTTTAAA
TATATTATTATTTATTTTGGTATATTATTTTAGCAAAAAATCATTCAAATGTATTATGTA
Found at i:108060427 original size:29 final size:30
Alignment explanation
Indices: 108060385--108060441 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
108060375 CGTATTTTTT
108060385 TATTTTCAGATTTTATTTTTTA-ATTATAC
1 TATTTTCAGATTTTATTTTTTATATTATAC
*
108060414 TATTTTCATATTTTATTTTTTATATTAT
1 TATTTTCAGATTTTATTTTTTATATTAT
108060442 TTTAACAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (30 bp):
TATTTTCAGATTTTATTTTTTATATTATAC
Found at i:108060896 original size:14 final size:14
Alignment explanation
Indices: 108060877--108060939 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
108060867 AAAAAATTAC
108060877 CTTTTTCTTTCCTT
1 CTTTTTCTTTCCTT
* *
108060891 CTTTTTCCTTCCCT
1 CTTTTTCTTTCCTT
*
108060905 CTTCTTCTTCTCCTTCT
1 CTTTTTCTT-TCC-T-T
108060922 CTTTTTCTTT--TT
1 CTTTTTCTTTCCTT
108060934 CTTTTT
1 CTTTTT
108060940 TCTTCTCTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
12 7 0.17
13 1 0.03
14 19 0.47
15 3 0.08
16 1 0.03
17 9 0.22
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
CTTTTTCTTTCCTT
Found at i:108060910 original size:17 final size:18
Alignment explanation
Indices: 108060888--108060934 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
108060878 TTTTTCTTTC
108060888 CTTCTTTTTCCTTC-CCT
1 CTTCTTTTTCCTTCTCCT
*
108060905 CTTCTTCTTCTCCTTCTCTT
1 CTTCTT-TT-TCCTTCTCCT
*
108060925 TTTCTTTTTC
1 CTTCTTTTTC
108060935 TTTTTTCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 8 0.32
20 7 0.28
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTCTTTTTCCTTCTCCT
Found at i:108060986 original size:3 final size:3
Alignment explanation
Indices: 108060967--108061034 Score: 61
Period size: 3 Copynumber: 23.0 Consensus size: 3
108060957 GCCTCCTCTC
* * *
108060967 CTT CTT TTT CTTT CTT CTT CTT C-T CTT CTT C-C CTT CTT C-C CTT
1 CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
108061010 CTT CTCT CTT TTT CTT CTT CTT CTT
1 CTT CT-T CTT CTT CTT CTT CTT CTT
108061035 TGCCAAAAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
2 4 0.08
3 42 0.81
4 6 0.12
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:108060988 original size:16 final size:15
Alignment explanation
Indices: 108060967--108061035 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 15
108060957 GCCTCCTCTC
108060967 CTTCTTTTTCTTTCTT
1 CTTCTTTTTC-TTCTT
*
108060983 CTTCTTCTCTTCTTC-C
1 CTTCTT-T-TTCTTCTT
**
108060999 CTTC-TTCCCTTCTT
1 CTTCTTTTTCTTCTT
108061013 CTCTCTTTTTCTTCTT
1 CT-TCTTTTTCTTCTT
108061029 CTTCTTT
1 CTTCTTT
108061036 GCCAAAAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
13 4 0.10
14 3 0.07
15 8 0.19
16 20 0.48
17 4 0.10
18 3 0.07
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (15 bp):
CTTCTTTTTCTTCTT
Found at i:108060995 original size:8 final size:8
Alignment explanation
Indices: 108060982--108061034 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
108060972 TTTTCTTTCT
108060982 TCTTCTTC
1 TCTTCTTC
108060990 TCTTCTTC
1 TCTTCTTC
*
108060998 CCTTCTTC
1 TCTTCTTC
*
108061006 CCTTCTTC
1 TCTTCTTC
108061014 TC-TCTT-
1 TCTTCTTC
108061020 T-TTCTTC
1 TCTTCTTC
108061027 TTCTTCTT
1 -TCTTCTT
108061035 TGCCAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 5 0.13
7 4 0.10
8 25 0.64
9 5 0.13
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (8 bp):
TCTTCTTC
Found at i:108065335 original size:12 final size:13
Alignment explanation
Indices: 108065318--108065350 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
108065308 CCTACCCAAT
*
108065318 TAAAATTTT-ATA
1 TAAAATTTTCACA
108065330 TAAAATTTTCACA
1 TAAAATTTTCACA
108065343 TAAAATTT
1 TAAAATTT
108065351 ATTTTCCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAAATTTTCACA
Found at i:108076796 original size:4 final size:4
Alignment explanation
Indices: 108076787--108076838 Score: 104
Period size: 4 Copynumber: 13.0 Consensus size: 4
108076777 ATTATAGTTG
108076787 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
108076835 CATA
1 CATA
108076839 TTACCTCTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:108077718 original size:77 final size:76
Alignment explanation
Indices: 108077464--108077732 Score: 228
Period size: 77 Copynumber: 3.6 Consensus size: 76
108077454 TTTCTTAACG
* * * *
108077464 GTTACTTAAAACTTTAAAAT-A-TCTTTAAAAAATTAAGTAATTCCTAAATTAATGGAAAATTAT
1 GTTACTTAAAACCTT--AATCAGTCTTTAAAAAATTAAGTAATTCCTAAA-CAATGGGAAATTAC
*
108077527 TTAAATTT-TTTAAC
63 TT-AATTTCTTTAAT
* * ** * * * * *
108077541 ATTACTTAAAA-CTTTATTTGTTCGTTAAGAAATTAAGCAAATCCTAAACAATGGG--A-TAGTT
1 GTTACTTAAAACCTTAATCAG-TCTTTAAAAAATTAAGTAATTCCTAAACAATGGGAAATTACTT
*
108077602 AATTTCTTTTAT
65 AATTTCTTTAAT
* * ** * *
108077614 GCTACTTAAAACCTTAACCAACCTTTAAGAAATTAAGTAATTCCTAAACCATGGGAAAGTTACTT
1 GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTAAGTAATTCCTAAACAATGGGAAA-TTACTT
*
108077679 AATTTCTTTGAT
65 AATTTCTTTAAT
*
108077691 GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTTAGTAATT
1 GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTAAGTAATT
108077733 TACTTACTTT
Statistics
Matches: 150, Mismatches: 33, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
72 5 0.03
73 46 0.31
74 7 0.05
75 1 0.01
76 7 0.05
77 84 0.56
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (76 bp):
GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTAAGTAATTCCTAAACAATGGGAAATTACTTA
ATTTCTTTAAT
Found at i:108082134 original size:2 final size:2
Alignment explanation
Indices: 108082076--108082118 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
108082066 AAGGTAATAC
*
108082076 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108082118 A
1 A
108082119 AGATAAGGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:108082363 original size:17 final size:18
Alignment explanation
Indices: 108082341--108082374 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108082331 ATATGTAAAT
108082341 TTTAAA-ATGAATAATAG
1 TTTAAATATGAATAATAG
*
108082358 TTTAAATATGTATAATA
1 TTTAAATATGAATAATA
108082375 TGTGAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTTAAATATGAATAATAG
Found at i:108083322 original size:16 final size:16
Alignment explanation
Indices: 108083294--108083339 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
108083284 TATAAAATAA
*
108083294 ATAAAACAA-AAAAAT
1 ATAAAAAAAGAAAAAT
* *
108083309 ATCAAAAATGAAAAAT
1 ATAAAAAAAGAAAAAT
108083325 ATAAAAAAAGAAAAA
1 ATAAAAAAAGAAAAA
108083340 GAAAATAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (16 bp):
ATAAAAAAAGAAAAAT
Found at i:108084233 original size:90 final size:90
Alignment explanation
Indices: 108084048--108084246 Score: 249
Period size: 90 Copynumber: 2.2 Consensus size: 90
108084038 CTACAACATG
* * *
108084048 CTCCACTGCAACTTCAAGGAGATAAGGTGTGTTTTGATGTGCTCTACTGCAACTTCAGAGAGACA
1 CTCCACTGCAACTTCAGGGAAATAAGGTGTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGACA
* * * *
108084113 GGATCTGTAATTTAGCTTCAATCTG
66 CGATCTATAATTTAGCTTCAACCTA
* * *
108084138 TTCCACTGCAACTTCAGGGAAATAATGTGTGTTTTGATCTGTTCTACTGCAACTTCAGAGAGACA
1 CTCCACTGCAACTTCAGGGAAATAAGGTGTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGACA
** *
108084203 CGATCTATAAATTT-TTTTTAACCTA
66 CGATCTAT-AATTTAGCTTCAACCTA
*
108084228 CTCCACTACAACTT-AGGGA
1 CTCCACTGCAACTTCAGGGA
108084247 GATAGGATGG
Statistics
Matches: 93, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
89 5 0.05
90 83 0.89
91 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (90 bp):
CTCCACTGCAACTTCAGGGAAATAAGGTGTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGACA
CGATCTATAATTTAGCTTCAACCTA
Found at i:108084429 original size:133 final size:133
Alignment explanation
Indices: 108084170--108084512 Score: 377
Period size: 133 Copynumber: 2.6 Consensus size: 133
108084160 TAATGTGTGT
* * * * * *
108084170 TTTGATCTGTTCTACTGCAACTTC-AGAGAGACACGATCTATAAATTTTTTTTAACCTACTCCAC
1 TTTGATCTGCTCTACTGCAACTTCAAG-GAGACAAGATCTA-CAA---TCTTTAGCCTGCTCCAC
* * * *
108084234 TACAAC-TTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGAAAGACAAGAT
61 TACAACTTTAGAGACATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGAT
* **
108084298 TCGCTGTC
126 TCACCCTC
*
108084306 TTTGATCTGCTCTACTGCAACTTCAAGGAGACAAGATCTACAATCTTTAGCCTGCTCCGCTACAA
1 TTTGATCTGCTCTACTGCAACTTCAAGGAGACAAGATCTACAATCTTTAGCCTGCTCCACTACAA
* * *
108084371 CTTTAGAGACATAGGATGGCGGTTTAAATCTGCTTCACTACAACTTCAGGAAGGCAAGATTCACC
66 CTTTAGAGACATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATTCACC
108084436 CTC
131 CTC
* * * * * * * * *
108084439 TTCGATCTACTCCACTGCAACTTTAGGGAGACAAGATTTACAATC-TTCGATCTGCTCCACTGCA
1 TTTGATCTGCTCTACTGCAACTTCAAGGAGACAAGATCTACAATCTTTAG-CCTGCTCCACTACA
108084503 ACTTTAGAGA
65 ACTTTAGAGA
108084513 AACAAGATCT
Statistics
Matches: 177, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
132 22 0.12
133 116 0.66
135 2 0.01
136 35 0.20
137 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (133 bp):
TTTGATCTGCTCTACTGCAACTTCAAGGAGACAAGATCTACAATCTTTAGCCTGCTCCACTACAA
CTTTAGAGACATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATTCACC
CTC
Found at i:108084474 original size:178 final size:178
Alignment explanation
Indices: 108084273--108084664 Score: 473
Period size: 178 Copynumber: 2.2 Consensus size: 178
108084263 AAATCTGCTT
** * ** * * *
108084273 CACTGCAACTTCAGAAAGACAAGATTCGCTGTCTTTGATCTGCTCTACTGCAACTTCAAG-GAGA
1 CACTGCAACTTCAGGGAGACAAGATTCACAATCTTCGATCTGCTCCACTGCAACTT-AAGAGAAA
* * * *
108084337 CAAGATCTACAATCTTTAGCCTGCTCCGCTACAACTTTAGAGACATAGGATGGCGGTTTAAATCT
65 CAAGATCTAAAATCTTTAGCCTACTCCACTACAACTTTAGAGACATAGGATGGCGGCTTAAATCT
* **
108084402 GCTTCACTACAACTTCAGGAAGGCAAGATTCACCCTCTTCGATCTACTC
130 GATTCACTACAACTTCAGGAAAACAAGATTCACCCTCTTCGATCTACTC
* * *
108084451 CACTGCAACTTTAGGGAGACAAGATTTACAATCTTCGATCTGCTCCACTGCAACTTTAGAGAAAC
1 CACTGCAACTTCAGGGAGACAAGATTCACAATCTTCGATCTGCTCCACTGCAACTTAAGAGAAAC
* * * *
108084516 AAGATCTAAAATCTTTAGCCTACTCCACTACAATTTTAGGGAGATAGGATGGTGGCTTAAATCTG
66 AAGATCTAAAATCTTTAGCCTACTCCACTACAACTTTAGAGACATAGGATGGCGGCTTAAATCTG
* * ** * * **
108084581 ATTCATTGCAACTTCAGGAAAACAAGATTTGCCGTTTTCGATCTGTTC
131 ATTCACTACAACTTCAGGAAAACAAGATTCACCCTCTTCGATCTACTC
*
108084629 TACTGCAACTTCAGGGAGACAAGA-TCTACAATCTTC
1 CACTGCAACTTCAGGGAGACAAGATTC-ACAATCTTC
108084665 AGCCTACTCC
Statistics
Matches: 179, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
177 3 0.02
178 176 0.98
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (178 bp):
CACTGCAACTTCAGGGAGACAAGATTCACAATCTTCGATCTGCTCCACTGCAACTTAAGAGAAAC
AAGATCTAAAATCTTTAGCCTACTCCACTACAACTTTAGAGACATAGGATGGCGGCTTAAATCTG
ATTCACTACAACTTCAGGAAAACAAGATTCACCCTCTTCGATCTACTC
Found at i:108084591 original size:133 final size:133
Alignment explanation
Indices: 108084451--108084788 Score: 505
Period size: 133 Copynumber: 2.5 Consensus size: 133
108084441 CGATCTACTC
* * * ** * * *
108084451 CACTGCAACTTTAGGGAGACAAGATTTACAATCTTCGATCTGCTCCACTGCAACTTTAGAGAAAC
1 CACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
* *
108084516 AAGATCTAAAATCTTTAGCCTACTCCACTACAATTTTAGGGAGATAGGATGGTGGCTTAAATCTG
66 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTG
108084581 ATT
131 ATT
* * * * *
108084584 CATTGCAACTTCAGGAAAACAAGATTTGCCGTTTTCGATCTGTTCTACTGCAACTTCAGGGAGAC
1 CACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
* *
108084649 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTG
66 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTG
*
108084714 CTT
131 ATT
*
108084717 CACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
1 CACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
108084782 AAGATCT
66 AAGATCT
108084789 GTAGAATCAG
Statistics
Matches: 181, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 181 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (133 bp):
CACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTG
ATT
Found at i:108084767 original size:45 final size:44
Alignment explanation
Indices: 108084265--108084787 Score: 175
Period size: 45 Copynumber: 11.8 Consensus size: 44
108084255 GGTGGCTTAA
* * * *
108084265 ATCTGCTTCACTGCAACTTCAGAAAGACAAGATTCGCTGTCTTTG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TCGCAGTCTTCG
* * * *
108084310 ATCTGCTCTACTGCAACTTCAAGG-AGACAAGATCTACAATCTT-T
1 ATCTGCTCCACTGCAACTTC-AGGAAGACAAGATC-GCAGTCTTCG
* * * * * * **
108084354 AGCCTGCTCCGCTACAACTTTA-G-AGACATAGGATGGCGGT-TTAA
1 A-TCTGCTCCACTGCAACTTCAGGAAGACA-A-GATCGCAGTCTTCG
* * * * **
108084398 ATCTGCTTCACTACAACTTCAGGAAGGCAAGATTCACCCTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TCGCAGTCTTCG
* * * ** *
108084443 ATCTACTCCACTGCAACTTTAGGGAGACAAGATTTACAATCTTCG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TCGCAGTCTTCG
* ** * *
108084488 ATCTGCTCCACTGCAACTTTAGAGAA-ACAAGATCTAAAATCTT-T
1 ATCTGCTCCACTGCAACTTCAG-GAAGACAAGATC-GCAGTCTTCG
* * * * * * * * ** * **
108084532 AGCCTACTCCACTACAATTTTAGGGAGATAGGAT-GGTGGCTTAA
1 A-TCTGCTCCACTGCAACTTCAGGAAGACAAGATCGCAGTCTTCG
* * * * * * *
108084576 ATCTGATTCATTGCAACTTCAGGAAAACAAGATTTGCCGTTTTCG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TCGCAGTCTTCG
* * * * *
108084621 ATCTGTTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTTC-
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATC-GCAGTCTTCG
* * * * * * * ** * **
108084665 AGCCTACTCCACTACAACTTTAGGGAGATAGGAT-GGTGGCTTAA
1 A-TCTGCTCCACTGCAACTTCAGGAAGACAAGATCGCAGTCTTCG
* * *
108084709 ATTTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TCGCAGTCTTCG
*
108084754 ATCTGCTCCACTGCAACTTCAGGGAGACAAGATC
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATC
108084788 TGTAGAATCA
Statistics
Matches: 341, Mismatches: 115, Indels: 45
0.68 0.23 0.09
Matches are distributed among these distances:
43 73 0.21
44 25 0.07
45 239 0.70
46 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGAAGACAAGATCGCAGTCTTCG
Found at i:108091942 original size:85 final size:84
Alignment explanation
Indices: 108091825--108091994 Score: 250
Period size: 85 Copynumber: 2.0 Consensus size: 84
108091815 TCAGCACCTT
* * *
108091825 TAAGAAGATAAGGTTGGTGGGTTAAATATGCTCCATTGCTGATACATGGAGATAAGATTCACCAT
1 TAAGAAGATAAGGTTAGTGGCTAAAATATGCTCCATTGCTGATACATGGAGATAAGATTCACCAT
*
108091890 CTTCAATCTGCTCAACAAC
66 CCTCAATCTGCTCAACAAC
* * *
108091909 TAAGAGAGATAAGGTTAGTGGCTAAAATCTGCTCCATTGCTGATATATGGAGATAAGATTCGCCA
1 TAAGA-AGATAAGGTTAGTGGCTAAAATATGCTCCATTGCTGATACATGGAGATAAGATTCACCA
* *
108091974 TCCTCGATCTGCTCCACAAC
65 TCCTCAATCTGCTCAACAAC
108091994 T
1 T
108091995 GCTTAGGGAG
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
84 5 0.07
85 71 0.93
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (84 bp):
TAAGAAGATAAGGTTAGTGGCTAAAATATGCTCCATTGCTGATACATGGAGATAAGATTCACCAT
CCTCAATCTGCTCAACAAC
Found at i:108092097 original size:43 final size:43
Alignment explanation
Indices: 108092014--108092273 Score: 144
Period size: 43 Copynumber: 6.0 Consensus size: 43
108092004 GATAAGATTT
* *
108092014 TCAATCTTCAGTCTGCT-TCCTTGCTACCTCAG-GAAAATAAGAC
1 TCAATCTTCAATCTGCTCT-CTTGCTACCTCAGAG-AGATAAGAC
* *
108092057 TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGC
1 TCAATCTTCAATCTGCTCTCTTGCTACCTCAGAGAGATAAGAC
* ** * * *
108092100 T-TATGGCTAAAATCTGCTC-CAT--TACCGATACATAGAGATAAGAT
1 TCAAT--CTTCAATCTGCTCTCTTGCTACC--T-CAGAGAGATAAGAC
* * * *** * *
108092144 TCACCATCTTCGATCTGC-CCCGTT-ATTGTTTAGGGAGATAAGATC
1 TCA--ATCTTCAATCTGCTCTC-TTGCTACCTCAGAGAGATAAGA-C
108092189 TTCAATCTTCAATCTGCT-TCCTTGCTACCTCAG-GAAGATAAGAC
1 -TCAATCTTCAATCTGCTCT-CTTGCTACCTCAGAG-AGATAAGAC
* *
108092233 TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAAATAAG
1 TCAATCTTCAATCTGCTCTCTTGCTACCTCAGAGAGATAAG
108092274 GCTAGTGGCT
Statistics
Matches: 163, Mismatches: 33, Indels: 42
0.68 0.14 0.18
Matches are distributed among these distances:
41 4 0.02
42 2 0.01
43 74 0.45
44 53 0.33
45 23 0.14
46 4 0.02
47 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (43 bp):
TCAATCTTCAATCTGCTCTCTTGCTACCTCAGAGAGATAAGAC
Found at i:108092117 original size:176 final size:177
Alignment explanation
Indices: 108091911--108092450 Score: 727
Period size: 176 Copynumber: 3.1 Consensus size: 177
108091901 TCAACAACTA
* * *
108091911 AGAGAGATAAGG-TTAGTGGCTAAAATCTGCTCCATTGCTGATATATGGAGATAAGATTCGCCAT
1 AGAGAGATAAGGCTTAGTGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCAT
* * * *
108091975 CCTCGATCTGCTCCACAACTGCTTAGGGAGATAAGATTTTCAATCTTCAGTCTGCTTCCTTGCTA
66 CTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATTTTCAATCTTCAATCTGCTTCCTTGCTA
108092040 CCTCAGGAAAATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTC
131 CCTCAGGAAAATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTC
* *
108092087 AGAGAGATAAGGCTTA-TGGCTAAAATCTGCTCCATTACCGATACATAGAGATAAGATTCACCAT
1 AGAGAGATAAGGCTTAGTGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCAT
* * * * *
108092151 CTTCGATCTGCCCCGTTATTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTA
66 CTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATTTTCAATCTTCAATCTGCTTCCTTGCTA
*
108092216 CCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTC
131 CCTCAGGAAAATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTC
* *
108092263 AGAGAAATAAGGC-TAGTGGCTAAAATCTACTCCATTACCGATACATGGAGATAAGATTCGCCAT
1 AGAGAGATAAGGCTTAGTGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCAT
* ** * *
108092327 CTTCGATCTGCTCCGCTACTTCTTAGGGAGATAAGATTCGCCATCTTCGATCTGC-TCC--GCTA
66 CTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATTTTCAATCTTCAATCTGCTTCCTTGCTA
* * * **
108092389 CTTCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCT-TCCTTGCTACCTC
131 C--CTCAGGAAAATAAGA-C-TCAATCTTCAACCTGCTCT-CTTGCTACCTC
108092440 AG-GAAGATAAG
1 AGAG-AGATAAG
108092451 ACTACAATTG
Statistics
Matches: 322, Mismatches: 34, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
173 5 0.02
175 18 0.06
176 262 0.81
177 37 0.11
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (177 bp):
AGAGAGATAAGGCTTAGTGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCAT
CTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATTTTCAATCTTCAATCTGCTTCCTTGCTA
CCTCAGGAAAATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTC
Found at i:108092359 original size:44 final size:44
Alignment explanation
Indices: 108092309--108092407 Score: 198
Period size: 44 Copynumber: 2.2 Consensus size: 44
108092299 ACCGATACAT
108092309 GGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTTCTTAG
1 GGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTTCTTAG
108092353 GGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTTCTTAG
1 GGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTTCTTAG
108092397 GGAGATAAGAT
1 GGAGATAAGAT
108092408 CTTCAATCTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (44 bp):
GGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTTCTTAG
Found at i:108092537 original size:176 final size:177
Alignment explanation
Indices: 108092353--108092717 Score: 554
Period size: 176 Copynumber: 2.1 Consensus size: 177
108092343 TACTTCTTAG
* *
108092353 GGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTTCTTAGGGAGATAAGATCTTCAATCTT
1 GGAGATAAGATTCACCATCTTCGATCTGCCCCGCTACTTCTTAGGGAGATAAGATCTTCAATCTT
*
108092418 CAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT-TGCCAACCTGCTCTCTTGCTACC
66 CAGTCTGCTTCCTTGCTACCCCAGGAAGATAAGACTACAATCT-CCAACCTGCTCTCTTGCTACC
* *
108092482 TCAGAGAGATAAGGCCAGTGG-TAAAATCTGCTCCATTGTCGACACAT
130 TCAGAGAGATAAGGCCAGTGGTTAAAATCTACTCCATTGCCGACACAT
108092529 GGAGATAAGATTCACCATCTTCGATCTGCCCCGCTACTTCTTAGGGAGATAAGATCTTCAATCTT
1 GGAGATAAGATTCACCATCTTCGATCTGCCCCGCTACTTCTTAGGGAGATAAGATCTTCAATCTT
** * * * * *
108092594 TGGTCTGCTTCCTTTCTACCCCAGGAAGATAAGACTGCCATCTTCAACCTGTTCTCTTGCTACCT
66 CAGTCTGCTTCCTTGCTACCCCAGGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACCT
* ** * *
108092659 CAGATAGATAAGGCTGGTGGTTTAAATCTACTCCATTGCCGATACAT
131 CAGAGAGATAAGGCCAGTGGTTAAAATCTACTCCATTGCCGACACAT
108092706 GGAGATAAGATT
1 GGAGATAAGATT
108092718 TGCTATTTTT
Statistics
Matches: 170, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
176 135 0.79
177 35 0.21
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (177 bp):
GGAGATAAGATTCACCATCTTCGATCTGCCCCGCTACTTCTTAGGGAGATAAGATCTTCAATCTT
CAGTCTGCTTCCTTGCTACCCCAGGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACCT
CAGAGAGATAAGGCCAGTGGTTAAAATCTACTCCATTGCCGACACAT
Found at i:108092538 original size:220 final size:220
Alignment explanation
Indices: 108092134--108092583 Score: 726
Period size: 220 Copynumber: 2.0 Consensus size: 220
108092124 CCGATACATA
* *
108092134 GAGATAAGATTCACCATCTTCGATCTGCCCCGTTATTGTTTAGGGAGATAAGATCTTCAATCTTC
1 GAGATAAGATTCACCATCTTCGATCTGCCCCGCTATTGCTTAGGGAGATAAGATCTTCAATCTTC
*
108092199 AATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCA
66 AATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTCCAACCTGCTCTCTTGCTACCTCA
* * *
108092264 GAGAAATAAGGCTAGTGGCTAAAATCTACTCCATTACCGATACATGGAGATAAGATTCGCCATCT
131 GAGAAATAAGGCCAGTGGCTAAAATCTACTCCATTACCGACACATGGAGATAAGATTCACCATCT
*
108092329 TCGATCTGCTCCGCTACTTCTTAGG
196 TCGATCTGCCCCGCTACTTCTTAGG
* *
108092354 GAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTT-CTTAGGGAGATAAGATCTTCAATCTT
1 GAGATAAGATTCACCATCTTCGATCTGCCCCGCTA-TTGCTTAGGGAGATAAGATCTTCAATCTT
*
108092418 CAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT-TGCCAACCTGCTCTCTTGCTACC
65 CAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CAATCT-CCAACCTGCTCTCTTGCTACC
* * **
108092482 TCAGAGAGATAAGGCCAGTGG-TAAAATCTGCTCCATTGTCGACACATGGAGATAAGATTCACCA
128 TCAGAGAAATAAGGCCAGTGGCTAAAATCTACTCCATTACCGACACATGGAGATAAGATTCACCA
108092546 TCTTCGATCTGCCCCGCTACTTCTTAGG
193 TCTTCGATCTGCCCCGCTACTTCTTAGG
108092574 GAGATAAGAT
1 GAGATAAGAT
108092584 CTTCAATCTT
Statistics
Matches: 213, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
220 168 0.79
221 45 0.21
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (220 bp):
GAGATAAGATTCACCATCTTCGATCTGCCCCGCTATTGCTTAGGGAGATAAGATCTTCAATCTTC
AATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTCCAACCTGCTCTCTTGCTACCTCA
GAGAAATAAGGCCAGTGGCTAAAATCTACTCCATTACCGACACATGGAGATAAGATTCACCATCT
TCGATCTGCCCCGCTACTTCTTAGG
Found at i:108092639 original size:220 final size:219
Alignment explanation
Indices: 108092134--108092670 Score: 665
Period size: 220 Copynumber: 2.4 Consensus size: 219
108092124 CCGATACATA
* * * * * *** *
108092134 GAGATAAGATTCACCATCTTCGATCTGCCCCGTTATTGTTTAGGGAGATAAGATCTTCAATCTTC
1 GAGATAAGATTCGCAATCTTCGATCTGCTCCGCTACT-CCCAGGAAGATAAGATCTTCAATCTTC
*
108092199 AATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCA
65 AATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTCCAACCTGCTCTCTTGCTACCTCA
* * *
108092264 GAGAAATAAGGCTAGTGGCTAAAATCTACTCCATTACCGATACATGGAGATAAGATTCGCCATCT
130 GAGAAATAAGGCCAGTGGCTAAAATCTACTCCATTACCGACACATGGAGATAAGATTCACCATCT
*
108092329 TCGATCTGCTCCGCTACTTCTTAGG
195 TCGATCTGCCCCGCTACTTCTTAGG
* ** *
108092354 GAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTTCTTAGGGAGATAAGATCTTCAATCTTC
1 GAGATAAGATTCGCAATCTTCGATCTGCTCCGCTAC-TCCCAGGAAGATAAGATCTTCAATCTTC
*
108092419 AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT-TGCCAACCTGCTCTCTTGCTACCT
65 AATCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CAATCT-CCAACCTGCTCTCTTGCTACCT
* * **
108092483 CAGAGAGATAAGGCCAGTGG-TAAAATCTGCTCCATTGTCGACACATGGAGATAAGATTCACCAT
128 CAGAGAAATAAGGCCAGTGGCTAAAATCTACTCCATTACCGACACATGGAGATAAGATTCACCAT
108092547 CTTCGATCTGCCCCGCTACTTCTTAGG
193 CTTCGATCTGCCCCGCTACTTCTTAGG
* * * * * *
108092574 GAGATAAGA-TCTTCAATCTTTGGTCTGCTTCCTTTCTAC-CCCAGGAAGATAAGA-CTGCCATC
1 GAGATAAGATTC-GCAATCTTCGATCTGC-TCC--GCTACTCCCAGGAAGATAAGATCTTCAATC
*
108092636 TTCAACCTG-TTCTCTTGCTACCTCA-GATAGATAAG
62 TTCAATCTGCTTC-CTTGCTACCTCAGGA-AGATAAG
108092671 GCTGGTGGTT
Statistics
Matches: 281, Mismatches: 27, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
219 7 0.02
220 211 0.75
221 59 0.21
223 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (219 bp):
GAGATAAGATTCGCAATCTTCGATCTGCTCCGCTACTCCCAGGAAGATAAGATCTTCAATCTTCA
ATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTCCAACCTGCTCTCTTGCTACCTCAG
AGAAATAAGGCCAGTGGCTAAAATCTACTCCATTACCGACACATGGAGATAAGATTCACCATCTT
CGATCTGCCCCGCTACTTCTTAGG
Found at i:108093071 original size:64 final size:64
Alignment explanation
Indices: 108092967--108093222 Score: 377
Period size: 64 Copynumber: 4.0 Consensus size: 64
108092957 TTTATATATC
* * * *
108092967 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAATTGGATGTG
1 ATGCTTATGTCAAATAATTAGGATACTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
108093031 ATACTTATGTCAAATAATTAAGATACTATGATCAAAATGAATCAAATGCTCCTAACTAGATATG
1 ATGCTTATGTCAAATAATTAGGATACTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * ** *
108093095 GTGCTGATGTCAAATAATCAGGACGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATACTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
108093159 ACGCTTTTGTCAAATAATTAGGATACTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATACTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
108093223 TTATGAATGA
Statistics
Matches: 168, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 168 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATACTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:108093284 original size:14 final size:13
Alignment explanation
Indices: 108093254--108093278 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108093244 AAAAAATAAG
108093254 AATGATCTTTTTA
1 AATGATCTTTTTA
108093267 AATGATCTTTTT
1 AATGATCTTTTT
108093279 TTAATGCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (13 bp):
AATGATCTTTTTA
Found at i:108094343 original size:7 final size:7
Alignment explanation
Indices: 108094327--108094393 Score: 55
Period size: 7 Copynumber: 9.0 Consensus size: 7
108094317 TGGTCTCTCG
108094327 TTTA-TT
1 TTTATTT
108094333 TTTATTT
1 TTTATTT
108094340 TTTATTAT
1 TTTATT-T
108094348 TTTATTATT
1 TTTA-T-TT
*
108094357 TTCTCTTT
1 TT-TATTT
108094365 TTTAATTT
1 TTT-ATTT
*
108094373 TTTAATT
1 TTTATTT
*
108094380 TTTAATT
1 TTTATTT
108094387 TTTATTT
1 TTTATTT
108094394 CGATCTTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
6 4 0.08
7 25 0.49
8 15 0.29
9 5 0.10
10 2 0.04
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTATTT
Found at i:108094352 original size:15 final size:14
Alignment explanation
Indices: 108094327--108094393 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 14
108094317 TGGTCTCTCG
108094327 TTTA-TTTTTATTT
1 TTTATTTTTTATTT
108094340 TTTATTATTTTATTATT
1 TTTATT-TTTTA-T-TT
*
108094357 TTCTCTTTTTTAATTT
1 TT-TATTTTTT-ATTT
* *
108094373 TTTAATTTTTAATT
1 TTTATTTTTTATTT
108094387 TTTATTT
1 TTTATTT
108094394 CGATCTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
13 4 0.09
14 10 0.23
15 11 0.26
16 5 0.12
17 9 0.21
18 4 0.09
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTATTTTTTATTT
Found at i:108100532 original size:49 final size:49
Alignment explanation
Indices: 108100311--108100901 Score: 1004
Period size: 49 Copynumber: 12.3 Consensus size: 49
108100301 CCCTTCGGGA
* * * * *
108100311 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
108100358 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCTATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100405 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100452 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108100499 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100548 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100597 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108100644 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100693 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100742 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108100791 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100840 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108100889 CTTATCACATATA
1 CTTATCACATATA
108100902 CTATCATGTA
Statistics
Matches: 523, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 184 0.35
49 338 0.65
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:108104153 original size:18 final size:18
Alignment explanation
Indices: 108104130--108104164 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108104120 GTACCTGCTC
108104130 AACTCTAGCAACAGGCTT
1 AACTCTAGCAACAGGCTT
* *
108104148 AACTCTGGCAACTGGCT
1 AACTCTAGCAACAGGCT
108104165 CTGCCTCATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (18 bp):
AACTCTAGCAACAGGCTT
Found at i:108109811 original size:17 final size:18
Alignment explanation
Indices: 108109789--108109835 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
108109779 TAAAATTGTA
108109789 ATATTATATAATTTAT-C
1 ATATTATATAATTTATAC
*
108109806 ATATTAT-TAA-ATATAC
1 ATATTATATAATTTATAC
108109822 ATATTTATATAATT
1 ATA-TTATATAATT
108109836 ATTTATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
15 3 0.12
16 7 0.29
17 11 0.46
18 3 0.12
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATTATATAATTTATAC
Found at i:108110271 original size:37 final size:37
Alignment explanation
Indices: 108110220--108110294 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
108110210 TTTGTTCTTG
* * *
108110220 ACAGGGAATAACTCCTATTCATTTTTGTTTTTGCTCT
1 ACAGAGAATAACTCCTATTCATTTCTGTCTTTGCTCT
* *
108110257 ACAGAGAATCACTCCTGTTCATTTCTGTCTTTGCTCT
1 ACAGAGAATAACTCCTATTCATTTCTGTCTTTGCTCT
108110294 A
1 A
108110295 TAGGAAATCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (37 bp):
ACAGAGAATAACTCCTATTCATTTCTGTCTTTGCTCT
Found at i:108113789 original size:17 final size:18
Alignment explanation
Indices: 108113767--108113801 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
108113757 AATAGAAATG
108113767 AAATTGG-AAAATTAATT
1 AAATTGGCAAAATTAATT
108113784 AAATTGGCTAAAATTAAT
1 AAATTGGC-AAAATTAAT
108113802 GAAAAGTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.34
Consensus pattern (18 bp):
AAATTGGCAAAATTAATT
Found at i:108114015 original size:10 final size:9
Alignment explanation
Indices: 108113967--108114027 Score: 50
Period size: 10 Copynumber: 6.1 Consensus size: 9
108113957 AGGAGAATCT
*
108113967 ATAAAAAAA
1 ATAAATAAA
*
108113976 ATATATATAA
1 ATAAATA-AA
108113986 ATAGACATGAAA
1 ATA-A-AT-AAA
108113998 ATAAATAAA
1 ATAAATAAA
108114007 ATGAAATAAGA
1 AT-AAATAA-A
108114018 ATAAATAAA
1 ATAAATAAA
108114027 A
1 A
108114028 ATTATACAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
9 12 0.28
10 19 0.44
11 4 0.09
12 7 0.16
13 1 0.02
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (9 bp):
ATAAATAAA
Found at i:108115014 original size:155 final size:152
Alignment explanation
Indices: 108114595--108115022 Score: 619
Period size: 156 Copynumber: 2.8 Consensus size: 152
108114585 ACTCTATTTC
* * *
108114595 GAAATAGTT-AAAAAAAATAAAAAATTTGTTTTAAAATTTTAAACTTTTCTTTAAAATGACTTAA
1 GAAATAGTTAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTACTTTAAAATGAC-TAA
* * *
108114659 AAAACAT-ATTTTTATTTTTCAAAATCTAAACTTTCTCTCTCTCTTTTAAAAAAAAACACTATTT
65 AAAAAATAATTTTTATTTTTAAAAATCTAAACTTTCTCT-T-T-TTTAAAAAAAAAACACTATTT
*
108114723 TTCTTAAAGATTAAAGCTTTTATTTT
127 TTCTTAAAGATTAAAGCTTTTACTTT
*
108114749 GAAGTAGTTGAAAAAAAAATCAAAACTTTGTTTTTAAAATTTTAAACTTTACTTTAAAATGACTA
1 GAAATAGTT-AAAAAAAAATCAAAACTTTG-TTTTAAAATTTTAAACTTTACTTTAAAATGACTA
*
108114814 AAAAAAATAGATTTTTATTTTTAAAAATCTAAACTTTCTCCTTTTTAAAAATAAAAACACTATTT
64 AAAAAAATA-ATTTTTATTTTTAAAAATCTAAACTTTCTCTTTTTTAAAAA-AAAAACACTATTT
108114879 TTCTTAAAGATTAAAGCTTTTACTTT
127 TTCTTAAAGATTAAAGCTTTTACTTT
* * *
108114905 GAAATAGTTAAAAAAAAATCAAAACTTTGTTTTAAAATTTTGAACTTTCCTTTAAAATAACTAAA
1 GAAATAGTTAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTACTTTAAAATGACTAAA
*
108114970 AATAAATAAATTTTTATTTGTT-AAAATCTAAAATTTCTCTTTTTTAAAAAAAA
66 AA-AAAT-AATTTTTATTT-TTAAAAATCTAAACTTTCTCTTTTTTAAAAAAAA
108115023 TAAAAAATTC
Statistics
Matches: 250, Mismatches: 15, Indels: 18
0.88 0.05 0.06
Matches are distributed among these distances:
154 46 0.18
155 67 0.27
156 76 0.30
157 32 0.13
158 29 0.12
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (152 bp):
GAAATAGTTAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTACTTTAAAATGACTAAA
AAAAATAATTTTTATTTTTAAAAATCTAAACTTTCTCTTTTTTAAAAAAAAAACACTATTTTTCT
TAAAGATTAAAGCTTTTACTTT
Found at i:108117875 original size:43 final size:43
Alignment explanation
Indices: 108117813--108118024 Score: 193
Period size: 43 Copynumber: 5.0 Consensus size: 43
108117803 ATGTGACATT
* * *
108117813 GATATGTGATTACGAGTAAGACCACGTTTGGGACGTTGGCGTC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
108117856 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* * * * *
108117899 GATATGT-AGTTACGTGTAAGACCATGTCTGGGACATCGGTATT
1 GATATGTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* * **
108117942 G-TATTTGATT-CATGTAAGACC-CTGTCTGGGACAG-CAGCATC
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC
** * * *
108117983 GATATAAGA-TAGCATGTAAGACCACGTCTAGGACATTGGCAT
1 GATATGTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
108118025 TGTACGATAT
Statistics
Matches: 139, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
41 25 0.18
42 12 0.09
43 101 0.73
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:108130401 original size:13 final size:13
Alignment explanation
Indices: 108130383--108130434 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 13
108130373 GATTCTGATG
108130383 TTTTGTTATAATA
1 TTTTGTTATAATA
*
108130396 TTTTGTTAGAATTA
1 TTTTGTTATAA-TA
108130410 TCCGTTTTGTTATAATA
1 ----TTTTGTTATAATA
108130427 TTTTGTTA
1 TTTTGTTA
108130435 GAATTATCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
13 18 0.56
14 2 0.06
17 2 0.06
18 10 0.31
ACGTcount: A:0.25, C:0.04, G:0.12, T:0.60
Consensus pattern (13 bp):
TTTTGTTATAATA
Found at i:108130420 original size:31 final size:31
Alignment explanation
Indices: 108130382--108130443 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
108130372 AGATTCTGAT
108130382 GTTTTGTTATAATATTTTGTTAGAATTATCC
1 GTTTTGTTATAATATTTTGTTAGAATTATCC
108130413 GTTTTGTTATAATATTTTGTTAGAATTATCC
1 GTTTTGTTATAATATTTTGTTAGAATTATCC
108130444 TTTCTCTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (31 bp):
GTTTTGTTATAATATTTTGTTAGAATTATCC
Found at i:108130462 original size:31 final size:31
Alignment explanation
Indices: 108130390--108130454 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
108130380 ATGTTTTGTT
* *
108130390 ATAATATTTTGTTAGAATTATCCGTTTTGTT
1 ATAATATTTTGTTAGAATTATCCGTTTTCTA
108130421 ATAATATTTTGTTAGAATTATCC-TTTCTCTA
1 ATAATATTTTGTTAGAATTATCCGTTT-TCTA
108130452 ATA
1 ATA
108130455 CAGTTTTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 3 0.10
31 28 0.90
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.52
Consensus pattern (31 bp):
ATAATATTTTGTTAGAATTATCCGTTTTCTA
Found at i:108130543 original size:19 final size:19
Alignment explanation
Indices: 108130504--108130545 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
108130494 TCTAATTGAA
*
108130504 ATTTATTATTTATTATAAT
1 ATTTATTATTTATTAAAAT
108130523 ATTTATT-TTTATTAAATAT
1 ATTTATTATTTATTAAA-AT
108130542 ATTT
1 ATTT
108130546 GGATAGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTATTATTTATTAAAAT
Found at i:108131314 original size:54 final size:55
Alignment explanation
Indices: 108131211--108131316 Score: 178
Period size: 54 Copynumber: 1.9 Consensus size: 55
108131201 TTTTGTCTTT
* * *
108131211 TTTTCTATATTTTCTATACTTGAGCTTTTTATAATATTTTGAAATATTCTTTTTC
1 TTTTCTATATTCTCTATACTTGAGCATTTTATAATATTCTGAAATATTCTTTTTC
108131266 TTTTCTATATTCTCTATACTTGAG-ATTTTATAATATTCTGAAATATTCTTT
1 TTTTCTATATTCTCTATACTTGAGCATTTTATAATATTCTGAAATATTCTTT
108131317 CTCCTATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
54 25 0.52
55 23 0.48
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (55 bp):
TTTTCTATATTCTCTATACTTGAGCATTTTATAATATTCTGAAATATTCTTTTTC
Found at i:108138939 original size:48 final size:48
Alignment explanation
Indices: 108138879--108139107 Score: 289
Period size: 48 Copynumber: 4.8 Consensus size: 48
108138869 GATATGGCAT
* * *
108138879 TGTGATCCCATGTAAGATCATGTCTGGGACATGGCATTGGCATTGATA
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
108138927 TGTGATCACATGTAAGACCATGTTTGGGACATGGCATTAGCATCAATA
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
108138975 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGAATCTATA
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
108139023 TGTGAT-ACCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
1 TGTGATCA-CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
**** * *
108139071 TGTGATTTTGTTTAAGACTATGTCTGGGACATGGCAT
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCAT
108139108 CGATATGAGA
Statistics
Matches: 156, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
48 156 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (48 bp):
TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:108139147 original size:42 final size:42
Alignment explanation
Indices: 108139060--108139150 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
108139050 GATATGGCAT
* * * *
108139060 TGGCATCGATATGTGATTTTGTTTAAGACTATGTCTGGGACA
1 TGGCATCGATATGAGACTTTGTTTAAAACCATGTCTGGGACA
108139102 TGGCATCGATATGAGACTTTGTTTAAAACCATAGT-T-GGACTA
1 TGGCATCGATATGAGACTTTGTTTAAAACCAT-GTCTGGGAC-A
108139144 TGGCATC
1 TGGCATC
108139151 AAGTAAACGA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 4 0.09
42 37 0.86
43 2 0.05
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (42 bp):
TGGCATCGATATGAGACTTTGTTTAAAACCATGTCTGGGACA
Found at i:108140752 original size:40 final size:40
Alignment explanation
Indices: 108140682--108140775 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
108140672 CCAACTCCGT
* * *
108140682 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAATATGGGAATAAAATCGACCCAC
* * *
108140720 CCATCCCTACACACCAAATATGGGAATAAAATCGACCTAT
1 CCAACCCTACACACCAAATATGGGAATAAAATCGACCCAC
*
108140760 CCAACCTTACACACCA
1 CCAACCCTACACACCA
108140776 TAAAGTACCG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 13 0.28
40 33 0.72
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.15
Consensus pattern (40 bp):
CCAACCCTACACACCAAATATGGGAATAAAATCGACCCAC
Found at i:108160671 original size:40 final size:41
Alignment explanation
Indices: 108160616--108160783 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 41
108160606 TGAATGATAC
* *
108160616 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATTATAT
* * *
108160656 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATTATAT
* ** *
108160696 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATTATAT
* * * * *
108160736 CCGGGTTAAGACCCGAAGACAATTGTGCTTG-TGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATTATAT
108160776 CC-GGCTAA
1 CCGGGCTAA
108160784 ATTTCGAAGA
Statistics
Matches: 105, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATTATAT
Found at i:108160749 original size:80 final size:80
Alignment explanation
Indices: 108160616--108160783 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
108160606 TGAATGATAC
* * ** * *
108160616 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGACAATT-
*
108160680 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* *
108160696 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAATCCGGGTTAAGACCCGAAGACAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGACCAAATCCGGGCTAAGACCCGAAGACAATT
**
108160760 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
108160776 CC-GGCTAA
1 CCGGGCTAA
108160784 ATTTCGAAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
79 6 0.08
80 65 0.87
81 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGACAATTG
TGCGAGTGGTTATAT
Found at i:108167408 original size:40 final size:40
Alignment explanation
Indices: 108167342--108167508 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
108167332 AAATTGAATG
* * *
108167342 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
108167381 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
108167421 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
108167461 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
108167501 ATATCCGG
1 ATATCCGG
108167509 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:108175460 original size:40 final size:40
Alignment explanation
Indices: 108175338--108175464 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 40
108175328 AAATTGAATG
* * * * **
108175338 ATATCCGGGCTAAG-CCCGAAGACCATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* **
108175377 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
108175417 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATT
108175457 ATATCCGG
1 ATATCCGG
108175465 TTATATGCCG
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 14 0.19
40 59 0.81
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:108189058 original size:39 final size:39
Alignment explanation
Indices: 108189015--108189093 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
108189005 GATTTCGTAA
108189015 GTGGTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGT
1 GTGGTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGT
**
108189054 GTGGTTTACCTCTAAGTCTTTTTAGGAAGGATTCAGCGT
1 GTGGTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGT
108189093 G
1 G
108189094 GGTGATTGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (39 bp):
GTGGTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGT
Found at i:108192012 original size:48 final size:48
Alignment explanation
Indices: 108191957--108192156 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
108191947 TGTTACAACA
*
108191957 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
108192005 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
108192053 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
108192101 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
108192149 TTCACATT
1 TTCACATT
108192157 CATCACATCG
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:108192202 original size:49 final size:49
Alignment explanation
Indices: 108192148--108192383 Score: 408
Period size: 47 Copynumber: 4.9 Consensus size: 49
108192138 CACACATATG
*
108192148 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTC
* *
108192197 CTTCACATTCATCACATCGGCCATTAGACCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTC
108192244 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTC
108192293 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTC
*
108192340 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
108192384 CATCTCCTAC
Statistics
Matches: 177, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
47 90 0.51
49 87 0.49
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTC
Found at i:108192261 original size:96 final size:96
Alignment explanation
Indices: 108192148--108192383 Score: 436
Period size: 96 Copynumber: 2.5 Consensus size: 96
108192138 CACACATATG
108192148 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
108192213 TCGGCCATTAGACCTTATCACATATATACTC
66 TCGGCCATTAGACCTTATCACATATATACTC
* *
108192244 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
108192309 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGACCTTATCACATATATACTC
*
108192340 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
108192384 CATCTCCTAC
Statistics
Matches: 136, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 136 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGACCTTATCACATATATACTC
Found at i:108197267 original size:22 final size:21
Alignment explanation
Indices: 108197237--108197283 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
108197227 TACAAATTAA
108197237 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
108197259 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
108197280 ATCT
1 ATCT
108197284 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:108197277 original size:16 final size:16
Alignment explanation
Indices: 108197256--108197306 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
108197246 ATTACAAGAT
108197256 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
108197272 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
108197291 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
108197307 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:108197289 original size:19 final size:21
Alignment explanation
Indices: 108197254--108197296 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
108197244 AGATTACAAG
108197254 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
108197275 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
108197294 ATC
1 ATC
108197297 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:108197732 original size:40 final size:40
Alignment explanation
Indices: 108197704--108197783 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
108197694 AACTGAATTT
108197704 AACCAGAATGATAATTTAAAAAGCCATCAAAATCAAGTTA
1 AACCAGAATGATAATTTAAAAAGCCATCAAAATCAAGTTA
108197744 AACCAGAATGATAATTTAAAAAGCCATCAAAATCAAGTTA
1 AACCAGAATGATAATTTAAAAAGCCATCAAAATCAAGTTA
108197784 CCGGGATGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.53, C:0.15, G:0.10, T:0.23
Consensus pattern (40 bp):
AACCAGAATGATAATTTAAAAAGCCATCAAAATCAAGTTA
Found at i:108199811 original size:16 final size:17
Alignment explanation
Indices: 108199770--108199811 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
108199760 ATATTGAATA
108199770 TTTTTAT-ATTATTTAT
1 TTTTTATAATTATTTAT
108199786 TTTTAATATAATTA-TTAT
1 TTTT--TATAATTATTTAT
108199804 TTTTTATA
1 TTTTTATA
108199812 CTTTTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 8 0.35
18 11 0.48
19 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTATAATTATTTAT
Found at i:108200372 original size:17 final size:17
Alignment explanation
Indices: 108200342--108200375 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
108200332 AATAATAATG
108200342 CTAATAAATTTAAAAAA
1 CTAATAAATTTAAAAAA
108200359 CTAA-AAATTATAAAAAA
1 CTAATAAATT-TAAAAAA
108200376 ATCTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
CTAATAAATTTAAAAAA
Found at i:108201020 original size:2 final size:2
Alignment explanation
Indices: 108200960--108201000 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
108200950 ATTTTGTTTA
108200960 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
108201001 AACTTAAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:108202261 original size:20 final size:20
Alignment explanation
Indices: 108202236--108202302 Score: 116
Period size: 20 Copynumber: 3.2 Consensus size: 20
108202226 GGCCAACCCA
108202236 TGTGGACTCAAACATGGACG
1 TGTGGACTCAAACATGGACG
108202256 TGTGGACTCAAACATGGACG
1 TGTGGACTCAAACATGGACG
108202276 TGTGGGGACTCAAACATGGACG
1 TGT--GGACTCAAACATGGACG
108202298 TGTGG
1 TGTGG
108202303 CTACCCCACA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
20 25 0.56
22 20 0.44
ACGTcount: A:0.27, C:0.18, G:0.34, T:0.21
Consensus pattern (20 bp):
TGTGGACTCAAACATGGACG
Found at i:108202287 original size:22 final size:22
Alignment explanation
Indices: 108202239--108202302 Score: 114
Period size: 22 Copynumber: 3.0 Consensus size: 22
108202229 CAACCCATGT
108202239 GGACTCAAACATGGACGTGT--
1 GGACTCAAACATGGACGTGTGG
108202259 GGACTCAAACATGGACGTGTGG
1 GGACTCAAACATGGACGTGTGG
108202281 GGACTCAAACATGGACGTGTGG
1 GGACTCAAACATGGACGTGTGG
108202303 CTACCCCACA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 20 0.48
22 22 0.52
ACGTcount: A:0.28, C:0.19, G:0.34, T:0.19
Consensus pattern (22 bp):
GGACTCAAACATGGACGTGTGG
Found at i:108202322 original size:21 final size:21
Alignment explanation
Indices: 108202296--108202364 Score: 111
Period size: 21 Copynumber: 3.3 Consensus size: 21
108202286 CAAACATGGA
108202296 CGTGTGGCTACCCCACACGCC
1 CGTGTGGCTACCCCACACGCC
108202317 CGTGTGGCTACCCCACACGCC
1 CGTGTGGCTACCCCACACGCC
* * *
108202338 CGTGTGGCTACTCTACACGTC
1 CGTGTGGCTACCCCACACGCC
108202359 CGTGTG
1 CGTGTG
108202365 CTCAGACCAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.13, C:0.41, G:0.26, T:0.20
Consensus pattern (21 bp):
CGTGTGGCTACCCCACACGCC
Found at i:108210191 original size:28 final size:27
Alignment explanation
Indices: 108210128--108210197 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
108210118 ATAGTGAGTC
108210128 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
108210155 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
108210183 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
108210198 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:108216839 original size:19 final size:18
Alignment explanation
Indices: 108216790--108216841 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
108216780 ACAAAGGTAG
108216790 CATATAATAATT-ATAATT
1 CATATAAT-ATTCATAATT
*
108216808 CATATACTATTCATAATT
1 CATATAATATTCATAATT
*
108216826 CATGTAAATATTCATA
1 CATAT-AATATTCATA
108216842 TATATATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 3 0.10
18 17 0.59
19 9 0.31
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (18 bp):
CATATAATATTCATAATT
Found at i:108218952 original size:2 final size:2
Alignment explanation
Indices: 108218947--108218984 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
108218937 CTCGTCTATT
108218947 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108218985 TCAAAGCTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:108223147 original size:22 final size:24
Alignment explanation
Indices: 108223094--108223149 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
108223084 TCTTCCAAAG
*
108223094 TTTTATTTCACTTTCATTTGTAGT
1 TTTTATTTCACTTTCATTTGTAAT
** *
108223118 TTAGATTTCTC-TT-ATTTGTAAT
1 TTTTATTTCACTTTCATTTGTAAT
108223140 TTTTATTTCA
1 TTTTATTTCA
108223150 GTTTTTATTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
22 15 0.60
23 2 0.08
24 8 0.32
ACGTcount: A:0.20, C:0.11, G:0.07, T:0.62
Consensus pattern (24 bp):
TTTTATTTCACTTTCATTTGTAAT
Found at i:108234409 original size:40 final size:39
Alignment explanation
Indices: 108234352--108234535 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
108234342 ATTAAATGAT
* * *
108234352 ATCC-GGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
108234391 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
108234431 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
108234471 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
108234511 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
108234536 CGTGCATGTG
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 6 0.05
40 117 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:108234489 original size:80 final size:80
Alignment explanation
Indices: 108234351--108234556 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
108234341 AATTAAATGA
* * ** * *
108234351 TATCC-GGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
108234415 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
108234428 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
108234493 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
108234510 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
108234557 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
79 4 0.04
80 101 0.93
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:108234541 original size:40 final size:40
Alignment explanation
Indices: 108234350--108234556 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
108234340 CAATTAAATG
* * ** * *
108234350 ATATCC-GGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * *
108234389 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
108234429 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
108234469 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
108234509 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
108234549 ATATCCGG
1 ATATCCGG
108234557 TTGTATTCCG
Statistics
Matches: 144, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 9 0.06
40 131 0.91
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:108240603 original size:40 final size:40
Alignment explanation
Indices: 108240558--108240687 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
108240548 CGGAATATAA
108240558 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
108240598 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
108240638 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
108240678 CCGGATATAA
1 CCGGATATAA
108240688 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:108245616 original size:40 final size:39
Alignment explanation
Indices: 108245559--108245743 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
108245549 ATTAAATGAT
* * *
108245559 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
108245599 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
108245639 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
108245679 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
108245719 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
108245744 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:108245695 original size:80 final size:80
Alignment explanation
Indices: 108245558--108245764 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
108245548 AATTAAATGA
* * ** * *
108245558 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
108245623 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
108245636 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
108245701 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
108245718 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
108245765 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:108245749 original size:40 final size:39
Alignment explanation
Indices: 108245557--108245764 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
108245547 CAATTAAATG
* * ** *
108245557 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
108245597 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
108245637 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
108245677 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
108245717 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
108245757 ATATCCGG
1 ATATCCGG
108245765 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:108248908 original size:23 final size:22
Alignment explanation
Indices: 108248882--108248927 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
108248872 ACTTTTCCGA
108248882 AGTTTA-ATTTCATTTTCATTTGT
1 AGTTTAGATTTC-TTTT-ATTTGT
*
108248905 AGTTTAGGTTTCTTTTATTTGT
1 AGTTTAGATTTCTTTTATTTGT
108248927 A
1 A
108248928 ATTTTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.61
Consensus pattern (22 bp):
AGTTTAGATTTCTTTTATTTGT
Found at i:108256241 original size:28 final size:28
Alignment explanation
Indices: 108256209--108256264 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
108256199 AATAAAAGTT
108256209 AGCCAAATTCTTCAACAATTCATCTATA
1 AGCCAAATTCTTCAACAATTCATCTATA
108256237 AGCCAAATTCTTCAACAATTCATCTATA
1 AGCCAAATTCTTCAACAATTCATCTATA
108256265 CATCCTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.32
Consensus pattern (28 bp):
AGCCAAATTCTTCAACAATTCATCTATA
Found at i:108259894 original size:41 final size:41
Alignment explanation
Indices: 108259828--108259908 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
108259818 AAGCAGTTTA
* * ** *
108259828 GGCCTTAGCCCATTTCAGTTTCAGTATCAGATATGCATTAG
1 GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTAG
108259869 GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTA
1 GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTA
108259909 ATCAGTAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (41 bp):
GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTAG
Found at i:108260487 original size:17 final size:18
Alignment explanation
Indices: 108260455--108260488 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108260445 ATGTGGACTA
108260455 CCCATATGGACCCACACG
1 CCCATATGGACCCACACG
*
108260473 CCCATGTGG-CCCACAC
1 CCCATATGGACCCACAC
108260489 TGGCCAGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.47, G:0.18, T:0.12
Consensus pattern (18 bp):
CCCATATGGACCCACACG
Found at i:108273455 original size:19 final size:20
Alignment explanation
Indices: 108273433--108273476 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
108273423 TCAAAAACTC
* *
108273433 AAAATAATTCTTAAAATT-T
1 AAAATAATTATAAAAATTCT
*
108273452 AAAATATTTATAAAAATTCT
1 AAAATAATTATAAAAATTCT
108273472 AAAAT
1 AAAAT
108273477 TTATATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATAATTATAAAAATTCT
Found at i:108277601 original size:23 final size:22
Alignment explanation
Indices: 108277570--108277722 Score: 155
Period size: 23 Copynumber: 6.7 Consensus size: 22
108277560 TTTTTTACAA
*
108277570 AGAATCTTCACTAGTTATTGTAG
1 AGAATCTTCACT-GTTATTGCAG
*
108277593 GGAATCTTCACTGTTCATTGCAG
1 AGAATCTTCACTGTT-ATTGCAG
* *
108277616 -GAAATCTTCACTACTTATTGCAC
1 AG-AATCTTCACT-GTTATTGCAG
* *
108277639 AGAATCTTTACTGTTTATTGTAG
1 AGAATCTTCACTG-TTATTGCAG
* *
108277662 AGAATCTTTACTGTTTATTGTAG
1 AGAATCTTCACTG-TTATTGCAG
*
108277685 AGAATCTTCACTATTAATTGCAG
1 AGAATCTTCACTGTT-ATTGCAG
108277708 AGAATCTTCACTGTT
1 AGAATCTTCACTGTT
108277723 CGTCTTTGTT
Statistics
Matches: 112, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.05
23 103 0.92
24 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (22 bp):
AGAATCTTCACTGTTATTGCAG
Found at i:108277644 original size:46 final size:46
Alignment explanation
Indices: 108277570--108277719 Score: 176
Period size: 46 Copynumber: 3.3 Consensus size: 46
108277560 TTTTTTACAA
* * *
108277570 AGAATCTTCACTAGTTATTGTAGGGAATCTTCACTGTTCATTGCAG
1 AGAATCTTCACTACTTATTGTAGAGAATCTTCACTGTTAATTGCAG
* * * * *
108277616 -GAAATCTTCACTACTTATTGCACAGAATCTTTACTGTTTATTGTAG
1 AG-AATCTTCACTACTTATTGTAGAGAATCTTCACTGTTAATTGCAG
* ** *
108277662 AGAATCTTTACTGTTTATTGTAGAGAATCTTCACTATTAATTGCAG
1 AGAATCTTCACTACTTATTGTAGAGAATCTTCACTGTTAATTGCAG
108277708 AGAATCTTCACT
1 AGAATCTTCACT
108277720 GTTCGTCTTT
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
45 1 0.01
46 83 0.98
47 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (46 bp):
AGAATCTTCACTACTTATTGTAGAGAATCTTCACTGTTAATTGCAG
Found at i:108277691 original size:69 final size:69
Alignment explanation
Indices: 108277570--108277722 Score: 204
Period size: 69 Copynumber: 2.2 Consensus size: 69
108277560 TTTTTTACAA
*
108277570 AGAATCTTCACTAG-TTATTGTAGGGAATCTTCACTGTTCATTGCAGGAAATCTTCACTACTT-A
1 AGAATCTTCACT-GTTTATTGTAGAGAATCTTCACTGTTCATTGCAGGAAATCTTCACTA-TTAA
108277633 TTGCAC
64 TTGCAC
* * * *
108277639 AGAATCTTTACTGTTTATTGTAGAGAATCTTTACTGTTTATTGTA-GAGAATCTTCACTATTAAT
1 AGAATCTTCACTGTTTATTGTAGAGAATCTTCACTGTTCATTGCAGGA-AATCTTCACTATTAAT
*
108277703 TGCAG
65 TGCAC
108277708 AGAATCTTCACTGTT
1 AGAATCTTCACTGTT
108277723 CGTCTTTGTT
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
68 5 0.07
69 69 0.93
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (69 bp):
AGAATCTTCACTGTTTATTGTAGAGAATCTTCACTGTTCATTGCAGGAAATCTTCACTATTAATT
GCAC
Found at i:108285494 original size:13 final size:13
Alignment explanation
Indices: 108285476--108285506 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
108285466 TGATACACAT
108285476 GGCCTGGCGATAC
1 GGCCTGGCGATAC
108285489 GGCCTGGCGATAC
1 GGCCTGGCGATAC
108285502 GGCCT
1 GGCCT
108285507 AGCACATAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.13, C:0.32, G:0.39, T:0.16
Consensus pattern (13 bp):
GGCCTGGCGATAC
Found at i:108288687 original size:14 final size:13
Alignment explanation
Indices: 108288651--108288688 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
108288641 AAATTTAAAT
108288651 CTAAATAATTATC
1 CTAAATAATTATC
*
108288664 CTTAATAATTATC
1 CTAAATAATTATC
108288677 CTAATATAATTA
1 CTAA-ATAATTA
108288689 AACATTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:108292116 original size:21 final size:21
Alignment explanation
Indices: 108292098--108292139 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
108292088 TAATAAATGC
*
108292098 TTAAGATAAAATTATAAATAA
1 TTAAAATAAAATTATAAATAA
* *
108292119 TTAAAATAAAATAAAAAATAA
1 TTAAAATAAAATTATAAATAA
108292140 AGAGAAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
TTAAAATAAAATTATAAATAA
Found at i:108304869 original size:42 final size:43
Alignment explanation
Indices: 108304795--108304895 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
108304785 TCTCTGACGT
* * *
108304795 GGTCTTACATGTAATTCAATATCGATGCCGATGTCCCAAACAG
1 GGTCTTACACGTAAATCAATATCGATGACGATGTCCCAAACAG
* *
108304838 GGTCTTACACG-AAATCAGATA-CGATGACGATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCGATGACGATGTCCCAAACAG
* *
108304880 GGTCTTATAAGTAAAT
1 GGTCTTACACGTAAAT
108304896 TTCAATCGAG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 32 0.65
43 17 0.35
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGACGATGTCCCAAACAG
Found at i:108308403 original size:14 final size:13
Alignment explanation
Indices: 108308367--108308404 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
108308357 AAATTTAAAT
108308367 CTAAATAATTATC
1 CTAAATAATTATC
*
108308380 CTTAATAATTATC
1 CTAAATAATTATC
108308393 CTAATATAATTA
1 CTAA-ATAATTA
108308405 AACATTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:108309905 original size:36 final size:36
Alignment explanation
Indices: 108309858--108309958 Score: 123
Period size: 36 Copynumber: 2.8 Consensus size: 36
108309848 CCAACCGAAA
***
108309858 CACACCAGATGCTCAAAAGAGCTAATCCATGTGAAG
1 CACACCAGATGCTCAAAAGAGCTAATCCATCCAAAG
*
108309894 CACACCAGATGCTCAAAAGAGTTAATCCATCCAAAG
1 CACACCAGATGCTCAAAAGAGCTAATCCATCCAAAG
** *
108309930 CACACCA-ATGGCTCTGAAGAGCTAGTCCA
1 CACACCAGAT-GCTCAAAAGAGCTAATCCA
108309959 ACCGAAAACA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
35 2 0.04
36 54 0.96
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.17
Consensus pattern (36 bp):
CACACCAGATGCTCAAAAGAGCTAATCCATCCAAAG
Found at i:108316993 original size:27 final size:27
Alignment explanation
Indices: 108316955--108317046 Score: 175
Period size: 27 Copynumber: 3.4 Consensus size: 27
108316945 CCATTACAGA
*
108316955 TTCAGATATAGTTTAGGCTTTAGCCCG
1 TTCAGATATAGTTTAGGCCTTAGCCCG
108316982 TTCAGATATAGTTTAGGCCTTAGCCCG
1 TTCAGATATAGTTTAGGCCTTAGCCCG
108317009 TTCAGATATAGTTTAGGCCTTAGCCCG
1 TTCAGATATAGTTTAGGCCTTAGCCCG
108317036 TTCAGATATAG
1 TTCAGATATAG
108317047 ATTCAGATAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (27 bp):
TTCAGATATAGTTTAGGCCTTAGCCCG
Found at i:108317156 original size:23 final size:23
Alignment explanation
Indices: 108317120--108317163 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
108317110 AATATGCTAC
108317120 CCACCAACCTCTACACACCATCT
1 CCACCAACCTCTACACACCATCT
108317143 CCACCTAACC-CTACACACCAT
1 CCACC-AACCTCTACACACCAT
108317164 GTGGGGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (23 bp):
CCACCAACCTCTACACACCATCT
Found at i:108318725 original size:13 final size:13
Alignment explanation
Indices: 108318707--108318734 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
108318697 CTAAGCCACC
108318707 TCACACGGGCGTG
1 TCACACGGGCGTG
108318720 TCACACGGGCGTG
1 TCACACGGGCGTG
108318733 TC
1 TC
108318735 CCTGTAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:108322437 original size:48 final size:48
Alignment explanation
Indices: 108322366--108322542 Score: 227
Period size: 48 Copynumber: 3.7 Consensus size: 48
108322356 AGTACCAATA
* * *
108322366 CCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACATG-AGCACACATATCATCGACGATG
*
108322414 CCATGTCCCAGACATGGTCTTACATTG-GCACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TGAGCACACATATCATCGACGATG
* * *
108322462 CCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCGACGATA
1 CCATGTCCCAGACATGGTCTTACATGA-GCACACATATCATCGACGATG
108322510 CCATGTCCCAGACATGGTCTTACAT-AGGCACAC
1 CCATGTCCCAGACATGGTCTTACATGA-GCACAC
108322543 GTCTCAAATA
Statistics
Matches: 116, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
47 1 0.01
48 113 0.97
49 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACATGAGCACACATATCATCGACGATG
Found at i:108322530 original size:96 final size:96
Alignment explanation
Indices: 108322366--108322542 Score: 266
Period size: 96 Copynumber: 1.8 Consensus size: 96
108322356 AGTACCAATA
* * * * *
108322366 CCATGTCCCCGACATGGTCTTACATGAATCCACATATCATCGTCGATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACATCAAGCCACATATCATCGACGATACCATGTCCCAGACATGG
*
108322431 TCTTACATTGGCACACATATCATCGCCGATG
66 TCTTACATAGGCACACATATCATCGCCGATG
* *
108322462 CCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCGACGATACCATGTCCCAGACATG
1 CCATGTCCCAGACATGGTCTTACATCAAGC-CACATATCATCGACGATACCATGTCCCAGACATG
108322526 GTCTTACATAGGCACAC
65 GTCTTACATAGGCACAC
108322543 GTCTCAAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 2 0.03
96 70 0.97
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (96 bp):
CCATGTCCCAGACATGGTCTTACATCAAGCCACATATCATCGACGATACCATGTCCCAGACATGG
TCTTACATAGGCACACATATCATCGCCGATG
Found at i:108328563 original size:28 final size:28
Alignment explanation
Indices: 108328498--108328565 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
108328488 CCCCTATTGA
* * *
108328498 AGTCGTAACATTAAGTCTTTATTCTCAT
1 AGTCGTAACATTAAGCCTCTATTCCCAT
* *
108328526 AGTTGCAACATTAAGCCTCTATTCCCAT
1 AGTCGTAACATTAAGCCTCTATTCCCAT
*
108328554 AGTCATAACATT
1 AGTCGTAACATT
108328566 CTCATGTTCA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (28 bp):
AGTCGTAACATTAAGCCTCTATTCCCAT
Found at i:108334139 original size:13 final size:14
Alignment explanation
Indices: 108334123--108334151 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
108334113 TTTTAAATAT
108334123 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
108334136 TTATAATGGTTTAA
1 TTATAATGGTTTAA
108334150 TT
1 TT
108334152 CTTCGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:108337691 original size:16 final size:17
Alignment explanation
Indices: 108337661--108337694 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
108337651 TTTAATCGAA
*
108337661 ATTTTTTTAATATTTTT
1 ATTTTTATAATATTTTT
108337678 ATTTTTATAA-ATTTTT
1 ATTTTTATAATATTTTT
108337694 A
1 A
108337695 AAATTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTTTATAATATTTTT
Found at i:108341307 original size:24 final size:24
Alignment explanation
Indices: 108341276--108341360 Score: 68
Period size: 24 Copynumber: 3.3 Consensus size: 24
108341266 CATTTAAGGG
108341276 TAAATTATTGATCATTTAGTCGTT
1 TAAATTATTGATCATTTAGTCGTT
*
108341300 TAAATTATGTTTTGGTTATCATTTAAG--G-G
1 TAAATTA----TT-G--ATCATTT-AGTCGTT
108341329 TAAATTATTGATCATTTAGTCGTT
1 TAAATTATTGATCATTTAGTCGTT
108341353 TAAATTAT
1 TAAATTAT
108341361 GTTTTGGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 22
0.67 0.03 0.31
Matches are distributed among these distances:
21 2 0.04
22 7 0.15
23 1 0.02
24 16 0.33
25 2 0.04
28 2 0.04
29 8 0.17
30 1 0.02
31 7 0.15
32 2 0.04
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49
Consensus pattern (24 bp):
TAAATTATTGATCATTTAGTCGTT
Found at i:108341327 original size:53 final size:53
Alignment explanation
Indices: 108341264--108341371 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
108341254 ATCATATGTA
108341264 ATCATTTAAGGGTAAATTATTGATCATTTAGTCGTTTAAATTATGTTTTGGTT
1 ATCATTTAAGGGTAAATTATTGATCATTTAGTCGTTTAAATTATGTTTTGGTT
108341317 ATCATTTAAGGGTAAATTATTGATCATTTAGTCGTTTAAATTATGTTTTGGTT
1 ATCATTTAAGGGTAAATTATTGATCATTTAGTCGTTTAAATTATGTTTTGGTT
108341370 AT
1 AT
108341372 TGAAATTTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.49
Consensus pattern (53 bp):
ATCATTTAAGGGTAAATTATTGATCATTTAGTCGTTTAAATTATGTTTTGGTT
Found at i:108342265 original size:2 final size:2
Alignment explanation
Indices: 108342258--108342289 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
108342248 GTCCTTTTTA
*
108342258 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108342290 GAAAAAACAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:108349880 original size:5 final size:5
Alignment explanation
Indices: 108349826--108349876 Score: 75
Period size: 5 Copynumber: 10.0 Consensus size: 5
108349816 TATCAAAAAG
* *
108349826 TTGATA TTGGA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA CTGAA
1 TTGA-A TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA
108349877 CTGATTAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
5 39 0.93
6 3 0.07
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.39
Consensus pattern (5 bp):
TTGAA
Found at i:108351262 original size:24 final size:23
Alignment explanation
Indices: 108351225--108351271 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
108351215 ATTATATTAA
* *
108351225 AATTAAAATTAAAATATAAATAT
1 AATTAAAATGAAAAAATAAATAT
*
108351248 AATTAAAAATGAAAAAATATATAT
1 AATT-AAAATGAAAAAATAAATAT
108351272 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AATTAAAATGAAAAAATAAATAT
Found at i:108354354 original size:40 final size:40
Alignment explanation
Indices: 108354295--108354502 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
108354285 CAATTGAATG
* * * *
108354295 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
108354335 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
108354375 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
108354415 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
108354455 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
108354495 ATATCCGG
1 ATATCCGG
108354503 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:108354433 original size:80 final size:80
Alignment explanation
Indices: 108354297--108354502 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
108354287 ATTGAATGAT
* * ** * * *
108354297 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
108354361 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
108354377 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
108354442 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
108354457 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
108354503 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Done.