Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 352 of 438
Found at i:109871997 original size:18 final size:19
Alignment explanation
Indices: 109871971--109872041 Score: 65
Period size: 18 Copynumber: 3.8 Consensus size: 19
109871961 TACTGTTGCT
* *
109871971 GTAAACAGTACAGTA-ACA
1 GTAATCAGTGCAGTATACA
*
109871989 GTAATCAGTGCAGTATGCA
1 GTAATCAGTGCAGTATACA
**
109872008 -TAATCAGTGCAGTACGCA
1 GTAATCAGTGCAGTATACA
* *
109872026 GTACTTAGTGCAGTAT
1 GTAATCAGTGCAGTAT
109872042 GCAGGTCCTA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 30 0.68
19 14 0.32
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (19 bp):
GTAATCAGTGCAGTATACA
Found at i:109872037 original size:19 final size:19
Alignment explanation
Indices: 109871987--109872045 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
109871977 AGTACAGTAA
109871987 CAGTAATCAGTGCAGTATG
1 CAGTAATCAGTGCAGTATG
*
109872006 CA-TAATCAGTGCAGTACG
1 CAGTAATCAGTGCAGTATG
* *
109872024 CAGTACTTAGTGCAGTATG
1 CAGTAATCAGTGCAGTATG
109872043 CAG
1 CAG
109872046 GTCCTACCCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 17 0.49
19 18 0.51
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (19 bp):
CAGTAATCAGTGCAGTATG
Found at i:109872517 original size:81 final size:81
Alignment explanation
Indices: 109872379--109872551 Score: 258
Period size: 81 Copynumber: 2.1 Consensus size: 81
109872369 GGGCATATCG
* * *
109872379 GTCATCTTACCATATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCATTTTACC
1 GTCATTTTACCATATAAGGGCAAAACAGTCATTTTACCTCAAAAGCGCAAAACAGTCATTTTACC
**
109872444 TCATAAGGGAAAAACA
66 TCATAAGCAAAAAACA
*
109872460 GTCATTTTACC-TCATAAGGGCAAAACAGTCATTTTACCTCAAAAGCGCAAAATAGTCATTTTAC
1 GTCATTTTACCAT-ATAAGGGCAAAACAGTCATTTTACCTCAAAAGCGCAAAACAGTCATTTTAC
*
109872524 CTCATAAGCAAAAAATA
65 CTCATAAGCAAAAAACA
*
109872541 GTTATTTTACC
1 GTCATTTTACC
109872552 GATTAGGGTT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.28
Consensus pattern (81 bp):
GTCATTTTACCATATAAGGGCAAAACAGTCATTTTACCTCAAAAGCGCAAAACAGTCATTTTACC
TCATAAGCAAAAAACA
Found at i:109872551 original size:27 final size:27
Alignment explanation
Indices: 109872379--109872531 Score: 245
Period size: 27 Copynumber: 5.7 Consensus size: 27
109872369 GGGCATATCG
*
109872379 GTCATCTTACCAT-ATAAGGGCAAAACA
1 GTCATTTTACC-TCATAAGGGCAAAACA
109872406 GTCATTTTACCTCATAAGGGCAAAACA
1 GTCATTTTACCTCATAAGGGCAAAACA
*
109872433 GTCATTTTACCTCATAAGGGAAAAACA
1 GTCATTTTACCTCATAAGGGCAAAACA
109872460 GTCATTTTACCTCATAAGGGCAAAACA
1 GTCATTTTACCTCATAAGGGCAAAACA
* * *
109872487 GTCATTTTACCTCAAAAGCGCAAAATA
1 GTCATTTTACCTCATAAGGGCAAAACA
109872514 GTCATTTTACCTCATAAG
1 GTCATTTTACCTCATAAG
109872532 CAAAAAATAG
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
26 1 0.01
27 117 0.99
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (27 bp):
GTCATTTTACCTCATAAGGGCAAAACA
Found at i:109872692 original size:18 final size:17
Alignment explanation
Indices: 109872666--109872699 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
109872656 CATAATGCGG
109872666 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
109872684 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
109872700 AAGCCCAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:109876860 original size:26 final size:26
Alignment explanation
Indices: 109876831--109876912 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
109876821 TGATAAAAAT
*
109876831 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109876857 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109876883 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109876909 TGAT
1 TGAT
109876913 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:109878549 original size:27 final size:28
Alignment explanation
Indices: 109878509--109878637 Score: 144
Period size: 27 Copynumber: 4.8 Consensus size: 28
109878499 AGGAAGCGTC
*
109878509 CTGGTGGCTATGCCACAAT-TATCTGAT
1 CTGGTGGCTCTGCCACAATATATCTGAT
109878536 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAATATATCTGAT
* *
109878562 CCTGGTGGCTATGCCAAAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACAATATATCTGAT
* *
109878590 TTGGTGGCTCTGCCAC-ATATAT-TTATT
1 CTGGTGGCTCTGCCACAATATATCTGA-T
*
109878617 CTGGTAGCTCTGCCACAATAT
1 CTGGTGGCTCTGCCACAATAT
109878638 TTGTATCTGA
Statistics
Matches: 86, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
26 7 0.08
27 72 0.84
28 7 0.08
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATATATCTGAT
Found at i:109878588 original size:54 final size:54
Alignment explanation
Indices: 109878506--109878611 Score: 194
Period size: 54 Copynumber: 2.0 Consensus size: 54
109878496 TGGAGGAAGC
*
109878506 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
109878560 GTCCTGGTGGCTATGCCAAAATTATCTGATTTGGTGGCTCTGCCACATATAT
1 GTCCTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATAT
109878612 TTATTCTGGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:109878621 original size:54 final size:54
Alignment explanation
Indices: 109878507--109878631 Score: 187
Period size: 54 Copynumber: 2.3 Consensus size: 54
109878497 GGAGGAAGCG
* *
109878507 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
* *
109878561 TCCTGGTGGCTATGCCAAAATTATCTGATTTGGTGGCTCTGCCACATATATTTA
1 TCCTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
* * *
109878615 TTCTGGTAGCTCTGCCA
1 TCCTGGTGGCTATGCCA
109878632 CAATATTTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:109880186 original size:24 final size:24
Alignment explanation
Indices: 109880154--109880224 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
109880144 CTGTCAGGAG
109880154 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
109880178 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
109880202 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
109880225 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:109880236 original size:48 final size:48
Alignment explanation
Indices: 109880154--109880247 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
109880144 CTGTCAGGAG
** * *
109880154 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
109880202 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
109880248 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:109881744 original size:27 final size:26
Alignment explanation
Indices: 109881643--109881754 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
109881633 AGGAAGCGTC
* * *
109881643 CTGGTGGCTATGCCACAATTGTCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
109881670 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
109881697 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
109881725 CTGGTGACTCTGTCACATTACCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
109881751 CTGG
1 CTGG
109881755 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.14, C:0.25, G:0.24, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:109881750 original size:54 final size:54
Alignment explanation
Indices: 109881643--109881754 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
109881633 AGGAAGCGTC
* * **
109881643 CTGGTGGCTATGCCACAATTGTCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATACCTGTT
* * *
109881697 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TACCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATACCTGTT
109881751 CTGG
1 CTGG
109881755 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.14, C:0.25, G:0.24, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATACCTGTT
Found at i:109888694 original size:24 final size:24
Alignment explanation
Indices: 109888664--109888954 Score: 510
Period size: 24 Copynumber: 12.1 Consensus size: 24
109888654 GAATGTGACT
* *
109888664 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
109888688 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109888712 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109888736 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109888760 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109888784 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109888808 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109888832 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109888856 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109888880 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109888904 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109888928 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109888952 ATA
1 ATA
109888955 TGGTCTTTGC
Statistics
Matches: 259, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 259 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:109896754 original size:24 final size:24
Alignment explanation
Indices: 109896724--109897014 Score: 510
Period size: 24 Copynumber: 12.1 Consensus size: 24
109896714 GAATGTGACT
* *
109896724 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
109896748 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109896772 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109896796 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109896820 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109896844 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109896868 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109896892 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109896916 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109896940 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
109896964 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109896988 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
109897012 ATA
1 ATA
109897015 TGGTCTTTGC
Statistics
Matches: 259, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 259 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:109899361 original size:24 final size:24
Alignment explanation
Indices: 109899329--109899399 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
109899319 CTGTCAGGAG
*
109899329 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAA
109899353 AGGATTTAGGAGTTGATAAGGGAA
1 AGGATTTAGGAGTTGATAAGGGAA
**
109899377 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
109899400 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.01, G:0.38, T:0.24
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAA
Found at i:109899411 original size:48 final size:48
Alignment explanation
Indices: 109899329--109899422 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
109899319 CTGTCAGGAG
** * *
109899329 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAA
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAA
109899377 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
109899423 AACAGGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.36, C:0.04, G:0.37, T:0.22
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAA
Found at i:109900855 original size:27 final size:27
Alignment explanation
Indices: 109900815--109900926 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
109900805 AGGAAGCGTC
*
109900815 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
109900842 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
109900869 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
109900897 CTGGTGACTCTGTCAC-ATTTTCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
109900923 CTGG
1 CTGG
109900927 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:109900919 original size:54 final size:54
Alignment explanation
Indices: 109900815--109900926 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
109900805 AGGAAGCGTC
*
109900815 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTT
* * *
109900869 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATTTCTGTT
109900923 CTGG
1 CTGG
109900927 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTT
Found at i:109905957 original size:22 final size:24
Alignment explanation
Indices: 109905932--109905984 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
109905922 TACAAATTGA
109905932 TAAA-AAT-TGATAATGGGTTAGG
1 TAAATAATCTGATAATGGGTTAGG
*
109905954 TAAATATTCCATGATAATGGGTTAGG
1 TAAATAAT-C-TGATAATGGGTTAGG
109905980 TAAAT
1 TAAAT
109905985 GTTCCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 4 0.15
23 2 0.08
26 20 0.77
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.34
Consensus pattern (24 bp):
TAAATAATCTGATAATGGGTTAGG
Found at i:109905968 original size:26 final size:26
Alignment explanation
Indices: 109905939--109905994 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
109905929 TGATAAAAAT
109905939 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
109905965 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
109905991 TGAT
1 TGAT
109905995 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:109907590 original size:41 final size:41
Alignment explanation
Indices: 109907526--109907868 Score: 474
Period size: 41 Copynumber: 8.3 Consensus size: 41
109907516 ACATAAAATT
* *
109907526 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TTTAATACACCGGCACAAAGCC
* * * * *
109907567 TACTAGGCAATAAGCCTGATATAATACACTGAGATATAAAGCC
1 TGCTAGGCAATAAGCCTGATTTAATACACCG-G-CACAAAGCC
*
109907610 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
* * *
109907651 TACTAGGCAATAAACCTGATTTAATACACCGACACAAAGCC
1 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
* * *
109907692 TGCTAGGTAATAAGCCTAATTTAATACACCGGTACAAAGCC
1 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
* *
109907733 TGCTAGGCAATAAGCCTGATTTAAAACACCGGAACAAAGCC
1 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
*
109907774 TTCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
*
109907815 TGCTAGGCAATAAGCCTGATTTAAAACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
109907856 TGCTAGGCAATAA
1 TGCTAGGCAATAA
109907869 AGCCCAAATA
Statistics
Matches: 270, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
41 230 0.85
42 5 0.02
43 35 0.13
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
Found at i:109914464 original size:41 final size:41
Alignment explanation
Indices: 109914407--109914748 Score: 510
Period size: 41 Copynumber: 8.3 Consensus size: 41
109914397 ACATAAAATT
* *
109914407 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCATAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
109914448 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
109914491 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
109914532 TGCTAGGCAA-AAGCATGATTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * * * *
109914572 TACTAGGTAATAAGCCTGATTTAAAACACTGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
109914613 TGCTAGGCAATAAGCCTGATTTAAAACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
109914654 TACTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
109914695 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
109914736 TGCTAGGCAATAA
1 TGCTAGGCAATAA
109914749 AGCCCGAATA
Statistics
Matches: 280, Mismatches: 16, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
40 36 0.13
41 201 0.72
42 3 0.01
43 40 0.14
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:109916074 original size:26 final size:26
Alignment explanation
Indices: 109916045--109916122 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
109916035 TGTTACATGT
109916045 TTATTTAGCAGGCTTTGAGCTGGTGA
1 TTATTTAGCAGGCTTTGAGCTGGTGA
* *
109916071 TTATTTAGCAGGCTTTGAGTTGGTGT
1 TTATTTAGCAGGCTTTGAGCTGGTGA
109916097 TTATTTAGCAGGCTTTGAGCTGGTGA
1 TTATTTAGCAGGCTTTGAGCTGGTGA
109916123 ATATATAGGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.18, C:0.10, G:0.31, T:0.41
Consensus pattern (26 bp):
TTATTTAGCAGGCTTTGAGCTGGTGA
Found at i:109917845 original size:80 final size:80
Alignment explanation
Indices: 109917761--109917909 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
109917751 TATGGTAACC
* * * *
109917761 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
109917825 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
109917841 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
109917906 CCGG
66 CCGG
109917910 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:109917851 original size:40 final size:38
Alignment explanation
Indices: 109917802--109917909 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
109917792 ATCACGATTT
*
109917802 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
109917842 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
109917882 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
109917910 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:109925962 original size:80 final size:80
Alignment explanation
Indices: 109925878--109926026 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
109925868 TATGGTAACC
* * * *
109925878 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
109925942 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
109925958 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
109926023 CCGG
66 CCGG
109926027 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:109925968 original size:40 final size:38
Alignment explanation
Indices: 109925919--109926026 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
109925909 ATCACGATTT
*
109925919 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
109925959 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
109925999 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
109926027 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:109931926 original size:40 final size:40
Alignment explanation
Indices: 109931881--109932047 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
109931871 CGGAATATAA
109931881 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
109931921 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
109931961 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
109932001 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
109932040 CCGGATAT
1 CCGGATAT
109932048 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:109932031 original size:80 final size:79
Alignment explanation
Indices: 109931897--109932047 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
109931887 ATAATCACGT
*
109931897 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
109931962 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
109931977 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
109932040 CCGGATAT
64 CCGGATAT
109932048 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:109939160 original size:27 final size:27
Alignment explanation
Indices: 109939122--109939176 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
109939112 AGCAAGGAGA
109939122 TAGTACACTTTAGGCACTCATCGGGTG
1 TAGTACACTTTAGGCACTCATCGGGTG
109939149 TAGTACACTTTAGGCACTCATCGGGTG
1 TAGTACACTTTAGGCACTCATCGGGTG
109939176 T
1 T
109939177 GCAAGATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (27 bp):
TAGTACACTTTAGGCACTCATCGGGTG
Found at i:109943443 original size:39 final size:39
Alignment explanation
Indices: 109943329--109943591 Score: 325
Period size: 39 Copynumber: 6.6 Consensus size: 39
109943319 GCTACTCGTT
* *
109943329 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* * *
109943369 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
109943409 CCAATGCCTTCAGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
109943448 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
**
109943487 CAAATGCCTTCGGGCTTAGCCCAAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * *
109943526 CAAATGCCTTCGGATCTTAGTCCGG-ATATAGTCACTTTGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
109943567 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
109943592 CATCATTCGA
Statistics
Matches: 197, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 112 0.57
40 75 0.38
41 10 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:109946117 original size:41 final size:41
Alignment explanation
Indices: 109946072--109946189 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
109946062 TGAAAGATAA
109946072 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
109946113 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
109946143 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
109946184 ATGTAG
1 ATGTAG
109946190 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:109946128 original size:71 final size:71
Alignment explanation
Indices: 109946040--109946203 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
109946030 GAGATGTATC
109946040 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
109946105 AGGACA
66 AGGACA
109946111 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
109946176 AGGACA
66 AGGACA
109946182 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
109946204 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:109953006 original size:80 final size:80
Alignment explanation
Indices: 109952830--109953050 Score: 342
Period size: 80 Copynumber: 2.8 Consensus size: 80
109952820 TATTCGGATG
* *
109952830 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
109952893 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
*
109952909 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
109952974 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
109952989 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
109953051 TACTTGGTTT
Statistics
Matches: 133, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
79 66 0.50
80 67 0.50
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:109953031 original size:40 final size:40
Alignment explanation
Indices: 109952830--109953017 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
109952820 TATTCGGATG
* *
109952830 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
109952870 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
109952909 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
109952949 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
109952989 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
109953018 AGCAAGTAGC
Statistics
Matches: 139, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 35 0.25
40 104 0.75
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:109955625 original size:11 final size:11
Alignment explanation
Indices: 109955609--109955638 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
109955599 TAACATTAAG
109955609 AATATATATAT
1 AATATATATAT
*
109955620 AATATAAATAT
1 AATATATATAT
109955631 AATATATA
1 AATATATA
109955639 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:109956483 original size:15 final size:16
Alignment explanation
Indices: 109956450--109956485 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
109956440 TTTCTTCTTT
*
109956450 TTTTTTTGGGGTTAGG
1 TTTTTTTGGGGTTAAG
109956466 TTTTTTTGGGG-TAAG
1 TTTTTTTGGGGTTAAG
109956481 TTTTT
1 TTTTT
109956486 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.61
Consensus pattern (16 bp):
TTTTTTTGGGGTTAAG
Found at i:109956501 original size:11 final size:11
Alignment explanation
Indices: 109956481--109956514 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
109956471 TTGGGGTAAG
109956481 TTTTTCTTTTTC
1 TTTTT-TTTTTC
109956493 TTTTTTTTTTC
1 TTTTTTTTTTC
109956504 TTTGTTTTTTT
1 TTT-TTTTTTT
109956515 TTTGGGTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:109956503 original size:17 final size:17
Alignment explanation
Indices: 109956481--109956517 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
109956471 TTGGGGTAAG
109956481 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
109956498 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
109956515 TTT
1 TTT
109956518 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:109957269 original size:88 final size:83
Alignment explanation
Indices: 109957162--109957735 Score: 286
Period size: 79 Copynumber: 7.0 Consensus size: 83
109957152 AACAGACATT
** * *
109957162 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
109957227 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
109957250 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
109957314 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
109957333 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
109957394 ATGAGTTGAATTTTTTG--AAA---
60 ATGAGTTG-ATTTTTTGAAAAACTG
** * * *
109957414 AAAAACAGAAATTGAAAATAGCTCACACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGT
1 AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
*
109957479 TGA-TTTTTGAAAACAGAATTTG
66 TGATTTTTTG--AA-A-AA-CTG
* * * * * * *
109957501 AAAAATAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
109957566 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** *
109957584 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGAGCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
109957644 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
109957661 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
109957722 TTGA-TTTTTGAAAA
65 TTGATTTTTTGAAAA
109957736 CAGAAATTGA
Statistics
Matches: 379, Mismatches: 71, Indels: 83
0.71 0.13 0.16
Matches are distributed among these distances:
75 6 0.02
76 2 0.01
77 56 0.15
78 1 0.00
79 98 0.26
80 6 0.02
81 6 0.02
82 7 0.02
83 9 0.02
84 39 0.10
85 9 0.02
86 8 0.02
87 32 0.08
88 94 0.25
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:109957366 original size:30 final size:30
Alignment explanation
Indices: 109957330--109957391 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
109957320 TTTTGAAAAA
109957330 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
109957360 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
109957390 CA
1 CA
109957392 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:109957796 original size:72 final size:71
Alignment explanation
Indices: 109957535--109957874 Score: 365
Period size: 72 Copynumber: 4.6 Consensus size: 71
109957525 GACATGTAAC
* * * *
109957535 CCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAACAGAAATTG--AAAATA
*
109957600 CCTCAGTGTGT
61 CCTCAGCGTGT
* * *
109957611 GAGCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAT
1 ---CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAAAT
* *
109957676 AGCTCAGCGCATGAG
60 ACCTCAGCG--TG-T
* * *
109957691 CCAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCA
*
109957756 ACGTGT
66 GCGTGT
* ** * *
109957762 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
1 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTC
109957827 AGCGTGT
65 AGCGTGT
109957834 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 -CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
109957875 TTTTTGAAAG
Statistics
Matches: 225, Mismatches: 30, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
71 1 0.00
72 98 0.44
73 1 0.00
74 21 0.09
75 9 0.04
77 42 0.19
78 3 0.01
79 50 0.22
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (71 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGT
Found at i:109958023 original size:73 final size:74
Alignment explanation
Indices: 109957902--109958356 Score: 251
Period size: 73 Copynumber: 5.9 Consensus size: 74
109957892 TTGAAAAATG
*
109957902 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
109957967 TTTTACAACA
65 TTTTACAACA
* * *
109957977 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--C
109958040 TTTTTTGA-AAGGCA
63 TTTTTT-ACAA--CA
* ** * * * * * **
109958054 GAAATTGAAAA-A-C-GGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCAC-CTCT
1 GAAATTGAAAATACCTCG-ACGTG----TACCT----GAG-G--CTCA-ACTCACCTCTCGCAAT
* * *
109958115 -CGCAATACGAGTTGATTTTTTTACAACA
53 ACG-AGT-TGACTT--TTTT---ACAACA
* **
109958143 GAAATTAAAAATACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
109958205 TTTTGAAACATACGA
65 TTTT---ACA-AC-A
* * *
109958220 AAAATTGACAATACCTC-AGCGTGT-CCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
109958282 TTTTGACAACA
65 TTTT-ACAACA
*
109958293 GAAATTGAAAATACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
109958355 TT
65 TT
109958357 GAAAAAGTAG
Statistics
Matches: 295, Mismatches: 49, Indels: 74
0.71 0.12 0.18
Matches are distributed among these distances:
73 95 0.32
74 3 0.01
75 42 0.14
76 5 0.02
77 75 0.25
78 10 0.03
79 8 0.03
80 3 0.01
81 1 0.00
82 2 0.01
84 2 0.01
85 1 0.00
86 6 0.02
87 8 0.03
88 14 0.05
89 12 0.04
90 3 0.01
91 5 0.02
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (74 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTACAACA
Found at i:109958043 original size:166 final size:163
Alignment explanation
Indices: 109957729--109958356 Score: 876
Period size: 166 Copynumber: 3.9 Consensus size: 163
109957719 AAGTTGATTT
* * ** *
109957729 TTGAAAACA-GAAATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTGAAAA-AGGAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACG
* * * * *
109957792 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
65 AGTTGATTTTTTACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
109957857 CAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAA
130 CAATATGAGTTGA-TTTTTTTTTGAAAGGCAGAAA
*
109957892 TTGAAAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAC
1 TTGAAAAA-GGAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATAC
*
109957957 GAGTTGACTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GAGTTGA-TTTTTTACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
109958022 CGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
128 CGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
*
109958058 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
1 TTGAAAAA-GGAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATAC
*
109958123 GAGTTGATTTTTTTACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GAGTTGA-TTTTTTACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
109958188 CGCAATATAAGTTGA---TTTTTTGAAA--C----A
128 CGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
** * *
109958215 -T-ACGAA--AAATTGACAATACCTC-AGCGTGT-CCCGAGGCTCAACTCACCTCTCGCAATACG
1 TTGAAAAAGGAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACG
109958274 AGTTGATTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
65 AGTTGATTTTTT-ACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
109958339 GCAATATGAGTTGATTTT
129 GCAATATGAGTTGATTTT
109958357 GAAAAAGTAG
Statistics
Matches: 431, Mismatches: 24, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
149 6 0.01
150 99 0.23
152 20 0.05
153 1 0.00
155 3 0.01
156 1 0.00
157 1 0.00
161 1 0.00
162 1 0.00
163 17 0.04
164 23 0.05
166 190 0.44
167 68 0.16
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (163 bp):
TTGAAAAAGGAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGA
GTTGATTTTTTACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
Found at i:109958058 original size:316 final size:307
Alignment explanation
Indices: 109957163--109958356 Score: 877
Period size: 316 Copynumber: 3.7 Consensus size: 307
109957153 ACAGACATTA
* * ** * *
109957163 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTAAAAATACCTCA--GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGT
* ** ** *
109957228 TGATTTTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAATACCTC-GATATGTGA-CTGGAGGT
64 TGATTTTTTGAAAC---A-TTGAAAA--ATAAATTGAAAATACCTCAG-CGTGTGACCT-GAGGC
* * * * *
109957291 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGACTCAACTCAAC
121 TCAACTCACCTCTCGCAATACGAGTTGATTTTTTG-ACAACAGAAATTGAAA-A-T-ACCTCAGC
* * * * *
109957355 -TCTCGCAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTTTGAAAAAA
182 GTGTC-C------T--GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTG-AAAAC
* * * *
109957417 AACAGAAATTGAAAATAGCTCACACGTG-AGCC-AAGGCTCAACTCACTTCTCGCAATATGAGTT
237 AAC-GAAATTGAAAATACCTCA-ACGTGTA-CCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
109957480 GAT-TTTTG
299 GATATTTTG
* * *
109957488 AAAACAGAATTTGAAAAATAGATTTTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACA
1 AAAAC---A---G----A-A-A--TTAAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACC
* * * *
109957552 TCTCGCAATGTGAGTTGATTTTTTTG--A-A---AAATATAAATTGAAAAAATACCTCAGTGTGT
49 TCTCGCAATATAAGTTGA-TTTTTTGAAACATTGAAAAATAAATTG--AAAATACCTCAGCGTGT
* * * * *
109957611 GAGCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAT
111 GACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTTTTGACA-ACAGAAATTGAAAAT
* * * * *
109957676 AGCTCAGCGCATGAGCC-AAGGGTCAACTCACCTCTCGCAATATAAGTTGA----TTTTTGAAAA
174 ACCTCAGCG--TG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAA
* ** *
109957736 C-A-GAAATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
236 CAACGAAATTGAAAATACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA
109957798 -ATTTTG
301 TATTTTG
* * *
109957804 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTG
*
109957869 ATTTTTTTTTTGAAAGGCAGAAATTGAAAAATGGAAATTGAAAATACCTC-GACGTGTGATCTGA
66 A----TTTTTTGAAA--C----ATTGAAAAAT--AAATTGAAAATACCTCAG-CGTGTGACCTGA
*
109957933 GGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTT-ACAACAGAAATTGAAATTACCTCAGC
118 GGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTTTTGACAACAGAAATTGAAAATACCTCAGC
109957997 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGA
182 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT--------G-AA---A
* **
109958062 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
235 ACAAC-GAAATTGAAAATACCTCAACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* *
109958127 TGATTTTTTT
298 TGATATTTTG
* *
109958137 ACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTG
** * *
109958202 ATTTTTTGAAACA-T-ACGAA-AAATTGACAATACCTCAGCGTGT--CCCGAGGCTCAACTCACC
66 ATTTTTTGAAACATTGAAAAATAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACC
109958262 TCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
131 TCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
109958327 AACTCACCTCTCGCAATATGAGTTGATTTT
196 AACTCACCTCTCGCAATATGAGTTGATTTT
109958357 GAAAAAGTAG
Statistics
Matches: 727, Mismatches: 66, Indels: 161
0.76 0.07 0.17
Matches are distributed among these distances:
300 34 0.05
302 16 0.02
303 9 0.01
304 1 0.00
305 2 0.00
306 1 0.00
310 3 0.00
311 32 0.04
312 1 0.00
313 22 0.03
314 3 0.00
315 72 0.10
316 149 0.20
317 23 0.03
318 20 0.03
319 2 0.00
320 4 0.01
321 9 0.01
322 1 0.00
323 32 0.04
324 2 0.00
325 5 0.01
327 3 0.00
328 7 0.01
329 16 0.02
330 73 0.10
331 8 0.01
332 51 0.07
333 66 0.09
334 1 0.00
335 1 0.00
336 2 0.00
337 4 0.01
338 1 0.00
339 44 0.06
340 7 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (307 bp):
AAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTG
ATTTTTTGAAACATTGAAAAATAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACC
TCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAACGAAATTGAAAATACCTCAACG
TGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATATTTTG
Found at i:109958264 original size:77 final size:73
Alignment explanation
Indices: 109958068--109958356 Score: 443
Period size: 73 Copynumber: 3.9 Consensus size: 73
109958058 TTGAAAAACG
*
109958068 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
*
109958133 TTTTACAACA
64 TTTGACAACA
* **
109958143 GAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
109958208 TGAAACATACGA
66 TG--ACA-AC-A
* * *
109958220 AAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
109958285 TGACAACA
66 TGACAACA
*
109958293 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
109958357 GAAAAAGTAG
Statistics
Matches: 195, Mismatches: 15, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
73 101 0.52
74 2 0.01
75 28 0.14
76 2 0.01
77 62 0.32
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (73 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TGACAACA
Found at i:109958425 original size:54 final size:54
Alignment explanation
Indices: 109958325--109958430 Score: 153
Period size: 54 Copynumber: 1.9 Consensus size: 54
109958315 GTCCTGAGGC
*
109958325 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTA-AAATTGAAAAGGT
*
109958379 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGAA-AAAGTAAAATTGAAAA
109958431 CAGAAATTGA
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
54 34 0.72
55 9 0.19
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:109958541 original size:140 final size:131
Alignment explanation
Indices: 109958284--109958749 Score: 557
Period size: 140 Copynumber: 3.6 Consensus size: 131
109958274 AGTTGATTTT
* *
109958284 TTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
109958349 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG-TG----TTG-
109958414 ACAACGTAAA
125 A-AA--TAAA
109958424 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
109958489 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA--GTTGAAATTA
66 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTGTTGAAATAA
109958552 A
131 A
* * * * *
109958553 ---AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
109958615 TTGATTTTGAAAAA-CAAAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGA--G-T-CAAT-
66 TTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTGTTGAAATA
109958673 --
130 AA
* * * * * * *
109958673 TT-AAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGTAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
109958737 TTGATTTTGAAAA
66 TTGATTTTGAAAA
109958750 CAAAAATTAA
Statistics
Matches: 302, Mismatches: 21, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
122 68 0.23
123 3 0.01
124 1 0.00
125 33 0.11
126 72 0.24
129 3 0.01
131 2 0.01
132 1 0.00
133 3 0.01
137 1 0.00
140 115 0.38
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.25
Consensus pattern (131 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTGTTGAAATAA
A
Found at i:109958733 original size:122 final size:124
Alignment explanation
Indices: 109958421--109958761 Score: 483
Period size: 126 Copynumber: 2.8 Consensus size: 124
109958411 TGAACAACGT
* * * *
109958421 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
109958486 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTG
66 GAGTTGATTTTGAAAAA-CAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTG
*
109958546 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
*
109958611 TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAG-T-
65 TGAGTTGATTTTGAAAAACAAAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTG
* * * * * * *
109958669 CAATTTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGTAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
109958734 GAGTTGATTTTG-AAAACAAAAATTAAAA
66 GAGTTGATTTTGAAAAACAAAAATTAAAA
109958762 ATACCTCAAC
Statistics
Matches: 197, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
121 16 0.08
122 62 0.31
123 7 0.04
124 1 0.01
125 41 0.21
126 70 0.36
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (124 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGAAAAACAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTG
Found at i:109958783 original size:71 final size:70
Alignment explanation
Indices: 109958640--109958814 Score: 219
Period size: 71 Copynumber: 2.5 Consensus size: 70
109958630 AAAAATTAAA
* * * * * *
109958640 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
109958704 CCCCG
66 CCCCG
* *
109958709 AGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
109958774 GTCTTG
65 GCCCCG
109958780 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
109958815 CCCTTGAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 25 0.27
70 6 0.07
71 60 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:109968613 original size:17 final size:17
Alignment explanation
Indices: 109968575--109968618 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
109968565 TTTTTTCTTC
*
109968575 TTTTTTTTTGGGGTTAG
1 TTTTTTTTTGGGGTAAG
*
109968592 GTTTTTTTTGGGGTAAG
1 TTTTTTTTTGGGGTAAG
109968609 TTTTTCTTTT
1 TTTTT-TTTT
109968619 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.07, C:0.02, G:0.25, T:0.66
Consensus pattern (17 bp):
TTTTTTTTTGGGGTAAG
Found at i:109968628 original size:16 final size:16
Alignment explanation
Indices: 109968609--109968643 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
109968599 TTGGGGTAAG
109968609 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
109968625 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
109968641 TTT
1 TTT
109968644 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:109973159 original size:41 final size:41
Alignment explanation
Indices: 109973094--109973229 Score: 184
Period size: 41 Copynumber: 3.3 Consensus size: 41
109973084 TTCTATAAAC
109973094 TACACATATGTG-CCCTATTTGTACTTCAGTACCCCTGAAT
1 TACACATATGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
* * * *
109973134 TGCACATTTGTGCCCCTATATGTACTTCAGTACCCCTAAAT
1 TACACATATGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
** **
109973175 TACACATACATGCCCCTATTTGTACTTTGGTACCCCTGAAT
1 TACACATATGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
*
109973216 TACACATACGTGCC
1 TACACATATGTGCC
109973230 ACTGTTTACA
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 10 0.12
41 72 0.88
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (41 bp):
TACACATATGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
Found at i:109973171 original size:20 final size:20
Alignment explanation
Indices: 109973106--109973171 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
109973096 CACATATGTG
*
109973106 CCCTATTTGTACTTCAGTAC
1 CCCTATATGTACTTCAGTAC
* * *
109973126 CCCTGA-ATTGCACATT-TGTGC
1 CCCT-ATA-TGTAC-TTCAGTAC
109973147 CCCTATATGTACTTCAGTAC
1 CCCTATATGTACTTCAGTAC
109973167 CCCTA
1 CCCTA
109973172 AATTACACAT
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
19 2 0.06
20 17 0.50
21 13 0.38
22 2 0.06
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (20 bp):
CCCTATATGTACTTCAGTAC
Found at i:109978690 original size:34 final size:34
Alignment explanation
Indices: 109978647--109978714 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
109978637 AGACTCGGTT
109978647 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
1 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
109978681 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
1 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
109978715 AATATGTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (34 bp):
TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
Found at i:109981312 original size:10 final size:10
Alignment explanation
Indices: 109981284--109981316 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
109981274 AATTGGGAAC
109981284 ATTTA-AAAA
1 ATTTAGAAAA
109981293 ATTTAGGAAAA
1 ATTTA-GAAAA
109981304 ATTTAGAAAA
1 ATTTAGAAAA
109981314 ATT
1 ATT
109981317 CAACTGCAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.23
10 8 0.36
11 9 0.41
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (10 bp):
ATTTAGAAAA
Found at i:109983475 original size:27 final size:26
Alignment explanation
Indices: 109983440--109983578 Score: 161
Period size: 27 Copynumber: 5.2 Consensus size: 26
109983430 AGCATAGCTG
** *
109983440 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
109983466 CCAGATACAGATAACTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
* *
109983494 CCAGAATAGATATATGCGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
109983521 CCAGAACAGATATATATGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
109983548 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
109983575 CCAG
1 CCAG
109983579 GATGCTTCCT
Statistics
Matches: 98, Mismatches: 11, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
26 6 0.06
27 76 0.78
28 16 0.16
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:109985739 original size:40 final size:39
Alignment explanation
Indices: 109985574--109985757 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
109985564 AAATTGAATG
* * *
109985574 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
109985614 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
109985654 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
109985694 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
109985733 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
109985758 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:109985782 original size:80 final size:81
Alignment explanation
Indices: 109985614--109985802 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
109985604 GCTGGAAATT
* * * *
109985614 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
109985679 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
109985695 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
109985758 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
109985774 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
109985803 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:109987861 original size:25 final size:24
Alignment explanation
Indices: 109987832--109987882 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 24
109987822 GCCCTCCCGA
109987832 ATCAGCTCCTAAAACTTCTCCCCTT
1 ATCAGCTCCTAAAACTTCT-CCCTT
*
109987857 ATCAGCTCCTAAATCTTCTCCCTT
1 ATCAGCTCCTAAAACTTCTCCCTT
109987881 AT
1 AT
109987883 ACCCTCCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.24, C:0.37, G:0.04, T:0.35
Consensus pattern (24 bp):
ATCAGCTCCTAAAACTTCTCCCTT
Found at i:109987889 original size:24 final size:25
Alignment explanation
Indices: 109987832--109987890 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
109987822 GCCCTCCCGA
*
109987832 ATCAGCTCCTAAAACTTCTCCCCTT
1 ATCACCTCCTAAAACTTCTCCCCTT
* *
109987857 ATCAGCTCCTAAATCTTCT-CCCTT
1 ATCACCTCCTAAAACTTCTCCCCTT
109987881 AT-ACCCTCCT
1 ATCA-CCTCCT
109987891 TACTCAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 1 0.03
24 12 0.39
25 18 0.58
ACGTcount: A:0.22, C:0.41, G:0.03, T:0.34
Consensus pattern (25 bp):
ATCACCTCCTAAAACTTCTCCCCTT
Found at i:109994182 original size:27 final size:26
Alignment explanation
Indices: 109994145--109994256 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
109994135 AGCATAGCTG
*
109994145 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
109994171 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
109994199 CCAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
** * *
109994226 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
109994253 CCAG
1 CCAG
109994257 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:109994237 original size:54 final size:54
Alignment explanation
Indices: 109994145--109994256 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
109994135 AGCATAGCTG
*
109994145 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
109994199 CCAGAACAGATATATGTGACAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
109994253 CCAG
1 CCAG
109994257 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 34 0.64
55 19 0.36
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:109995604 original size:25 final size:24
Alignment explanation
Indices: 109995566--109995624 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
109995556 CAACACTACC
* *
109995566 CTCCCTAATTAGCTCCTAAAACTT
1 CTCCCTTATCAGCTCCTAAAACTT
* * *
109995590 TTCCCCTTATCAGCTCTTAAATCTT
1 CT-CCCTTATCAGCTCCTAAAACTT
109995615 CTCCCTTATC
1 CTCCCTTATC
109995625 CCCTCCTTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.22, C:0.36, G:0.03, T:0.39
Consensus pattern (24 bp):
CTCCCTTATCAGCTCCTAAAACTT
Found at i:109998651 original size:42 final size:42
Alignment explanation
Indices: 109998543--109998709 Score: 138
Period size: 43 Copynumber: 3.9 Consensus size: 42
109998533 TTGTACAATG
* ** * * * *
109998543 CCAACGTCCCAGACGTGGTCTTACATGTAATCAATTATCGATG
1 CCAATGTCCCAGATATGGTCTTACACGAAATCAAATAT-GATA
* * *
109998586 CCACTATCCCAGATAAGGTCTTACACGAAATCAAATATGATA
1 CCAATGTCCCAGATATGGTCTTACACGAAATCAAATATGATA
*** * * *
109998628 TTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATG
1 CCAATGTCCCAGATATGGTCTTACACG-AAA--TCAAATATGATA
*
109998672 CCAATGTCCCAGATGTGGTCTTACACGAAATCAAATAT
1 CCAATGTCCCAGATATGGTCTTACACGAAATCAAATAT
109998710 CGAAAATCCT
Statistics
Matches: 95, Mismatches: 25, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
41 6 0.06
42 23 0.24
43 35 0.37
44 25 0.26
45 6 0.06
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
CCAATGTCCCAGATATGGTCTTACACGAAATCAAATATGATA
Found at i:109998692 original size:86 final size:84
Alignment explanation
Indices: 109998548--109998709 Score: 227
Period size: 86 Copynumber: 1.9 Consensus size: 84
109998538 CAATGCCAAC
* * *
109998548 GTCCCAGACGTGGTCTTACATGTAATCAATTATCGATGCCACTATCCCAGATAAGGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTAATCAA-TATCGATGCCAATATCCCAGATAAGGTCTTACACG
109998613 AAATCAAATATGATATTGAT
65 AAATCAAATATGATATTGAT
* **
109998633 GTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATGTCCCAGATGTGGTCTTACA
1 GTCCCAGACATGGTCTTACACGT-AA--TCAATATCGATGCCAATATCCCAGATAAGGTCTTACA
109998697 CGAAATCAAATAT
63 CGAAATCAAATAT
109998710 CGAAAATCCT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 21 0.31
86 43 0.63
88 4 0.06
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (84 bp):
GTCCCAGACATGGTCTTACACGTAATCAATATCGATGCCAATATCCCAGATAAGGTCTTACACGA
AATCAAATATGATATTGAT
Found at i:110001532 original size:25 final size:25
Alignment explanation
Indices: 110001503--110001550 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
110001493 TTATACCATG
* * *
110001503 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
110001528 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
110001551 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:110001623 original size:20 final size:20
Alignment explanation
Indices: 110001594--110001651 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
110001584 TAAATATGGT
110001594 ATGT-TGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
110001613 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
110001633 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
110001652 GGTAATCATA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
19 4 0.11
20 33 0.89
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:110001633 original size:11 final size:11
Alignment explanation
Indices: 110001598--110001651 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
110001588 TATGGTATGT
110001598 TGATATGCACA
1 TGATATGCACA
* *
110001609 TGAAATG--TA
1 TGATATGCACA
110001618 TGATATGCACA
1 TGATATGCACA
*
110001629 TGATATG--TA
1 TGATATGCACA
110001638 TGATATGCACA
1 TGATATGCACA
110001649 TGA
1 TGA
110001652 GGTAATCATA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
TGATATGCACA
Found at i:110001746 original size:23 final size:24
Alignment explanation
Indices: 110001702--110001843 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
110001692 GAGGAAGTGA
*
110001702 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
110001726 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
110001749 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
110001772 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
110001796 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
110001820 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
110001844 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
23 45 0.42
24 52 0.48
25 11 0.10
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:110001771 original size:47 final size:47
Alignment explanation
Indices: 110001702--110001843 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
110001692 GAGGAAGTGA
110001702 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
110001749 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
* * *
110001796 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
110001844 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
46 13 0.15
47 53 0.60
48 11 0.12
49 11 0.12
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:110002068 original size:31 final size:31
Alignment explanation
Indices: 110002033--110002096 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
110002023 CGTTTACAGT
110002033 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
110002064 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
110002095 AA
1 AA
110002097 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:110009621 original size:25 final size:25
Alignment explanation
Indices: 110009593--110009640 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
110009583 CCTTATAATG
* * *
110009593 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
110009618 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
110009641 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:110009709 original size:20 final size:20
Alignment explanation
Indices: 110009684--110009742 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
110009674 TAAATATGGT
110009684 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
110009704 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
110009724 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
110009743 GTAATCATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:110009724 original size:11 final size:11
Alignment explanation
Indices: 110009688--110009742 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
110009678 TATGGTATGT
110009688 ATGATATGCAC
1 ATGATATGCAC
* *
110009699 ATGAAATG--T
1 ATGATATGCAC
110009708 ATGATATGCAC
1 ATGATATGCAC
*
110009719 ATGATATG--T
1 ATGATATGCAC
110009728 ATGATATGCAC
1 ATGATATGCAC
110009739 ATGA
1 ATGA
110009743 GTAATCATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:110009819 original size:24 final size:24
Alignment explanation
Indices: 110009792--110009932 Score: 200
Period size: 23 Copynumber: 6.0 Consensus size: 24
110009782 GAGGAAGTGA
*
110009792 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
110009816 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
110009839 AAAAGGGCTTATGCCCCAGTT-TT
1 AAAAGGGCTTATGCCCCAGTTATT
110009862 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
110009885 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
110009909 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
110009933 ATGATAAAGC
Statistics
Matches: 106, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
22 7 0.07
23 48 0.45
24 40 0.38
25 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:110010158 original size:31 final size:31
Alignment explanation
Indices: 110010123--110010186 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
110010113 CGTTTACAGT
110010123 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
110010154 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
110010185 AA
1 AA
110010187 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:110014178 original size:26 final size:26
Alignment explanation
Indices: 110014149--110014202 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
110014139 CATCACAATT
110014149 CTTATCAAAATTTTAATACGACCTTA
1 CTTATCAAAATTTTAATACGACCTTA
110014175 CTTATCAAAATTTTAATACGACCTTA
1 CTTATCAAAATTTTAATACGACCTTA
110014201 CT
1 CT
110014203 AACATCCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.39
Consensus pattern (26 bp):
CTTATCAAAATTTTAATACGACCTTA
Found at i:110016218 original size:40 final size:39
Alignment explanation
Indices: 110016053--110016236 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
110016043 AAATTGATTG
* * *
110016053 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
110016093 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
110016133 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
110016173 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
110016212 GATATCCGGGTTAAGTCCCGCAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
110016237 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:110016261 original size:80 final size:81
Alignment explanation
Indices: 110016093--110016281 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
110016083 GCTGGAAATT
* * * *
110016093 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
110016158 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
110016174 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGCAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
110016237 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
110016253 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
110016282 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:110016821 original size:40 final size:40
Alignment explanation
Indices: 110016755--110016921 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
110016745 AAATTGAATG
* * *
110016755 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
110016794 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
110016834 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
110016874 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
110016914 ATATCCGG
1 ATATCCGG
110016922 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:110024827 original size:40 final size:40
Alignment explanation
Indices: 110024761--110024927 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
110024751 AAATTGAATG
* * *
110024761 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
110024800 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
110024840 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
110024880 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
110024920 ATATCCGG
1 ATATCCGG
110024928 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:110027050 original size:40 final size:40
Alignment explanation
Indices: 110026784--110027043 Score: 345
Period size: 39 Copynumber: 6.6 Consensus size: 40
110026774 AATGATGTCT
* *
110026784 GGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
*
110026824 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
110026864 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
110026903 GGGCTATGT-CCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
110026942 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
110026981 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
110027021 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
110027044 AACGAGTAGC
Statistics
Matches: 196, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
39 108 0.55
40 78 0.40
41 10 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:110029931 original size:40 final size:40
Alignment explanation
Indices: 110029887--110030074 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
110029877 GCTACTTGCT
110029887 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
110029927 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
110029967 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
110030007 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
110030046 CAAATGCCTTCGGGACTTTGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
110030075 CATCCGAATA
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 99 0.74
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:110029986 original size:80 final size:79
Alignment explanation
Indices: 110029854--110030074 Score: 313
Period size: 80 Copynumber: 2.8 Consensus size: 79
110029844 AAACCAAGTA
* * * *
110029854 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
110029918 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
110029933 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
110029998 TAACTCGTACAAATG
65 TAACTCGCACAAATG
* *
110030013 CCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCACAAATGCCTTCGGGACTTTGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
110030075 CATCCGAATA
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 3 0.02
79 59 0.45
80 68 0.52
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:110034628 original size:30 final size:30
Alignment explanation
Indices: 110034592--110034738 Score: 158
Period size: 30 Copynumber: 4.9 Consensus size: 30
110034582 AAGAAACATT
* *
110034592 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
110034622 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
110034652 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
110034682 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
110034713 ATCAGTAA-CA-GAATCAGAATCAGAAT
1 ATCAG-AATTAGGAA-CAGAATCAGAAT
110034739 TACGTGACAG
Statistics
Matches: 102, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.02
30 71 0.70
31 27 0.26
32 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:110034706 original size:25 final size:24
Alignment explanation
Indices: 110034613--110034763 Score: 122
Period size: 24 Copynumber: 5.7 Consensus size: 24
110034603 AACCAAAATG
* *
110034613 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
*
110034637 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAG-----A-ATTAGTGAC
110034667 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATC--A----GAATTA-GTGAC
* *
110034698 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
110034722 AGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATTA-GTGAC
*
110034747 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
110034764 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 7, Indels: 27
0.76 0.05 0.19
Matches are distributed among these distances:
24 36 0.34
25 25 0.24
29 2 0.02
30 24 0.23
31 17 0.16
32 1 0.01
36 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTGAC
Found at i:110034756 original size:6 final size:6
Alignment explanation
Indices: 110034613--110034738 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
110034603 AACCAAAATG
*
110034613 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
110034661 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
110034710 AGAATC AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAAT
110034739 TACGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:110034937 original size:27 final size:26
Alignment explanation
Indices: 110034895--110034996 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
110034885 GCTCAGTTAT
* *
110034895 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
110034922 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
110034948 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
110034976 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
110034997 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:110035701 original size:27 final size:27
Alignment explanation
Indices: 110035643--110036195 Score: 587
Period size: 27 Copynumber: 21.0 Consensus size: 27
110035633 AAAGGCAAAA
* * * *
110035643 TGGTAATTTTACCCCACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
110035669 TGGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
110035696 TAGTAATTCTACCTTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110035723 TAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110035750 CGGTAATTCTACCCTACAGGGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110035777 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
110035804 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
110035831 CGATAATTCTACCCTACAGGGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
110035858 CGATAATTCTACCCGACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110035885 CGGTAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
110035912 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110035939 CGGTAATTCTACCCTACA--GGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110035964 CGATAATTCTACCCTACA---G-----
1 TGGTAATTCTACCCTACAGGGGTATTT
110035983 -GGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * * *
110036009 CGATAATTTTACCCTACAAGGGTATTA
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110036036 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
**
110036063 CAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
110036090 CGGTAATTCTACCCTACA-GGGTA-TT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
110036115 TCGTTATTCTACCCTACAGGGGTAATT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
110036142 CGATAATTCTAACCTACAGGGGTA-TT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
110036168 CGGTAATTCTACGCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
110036195 T
1 T
110036196 TGTTTTGTAA
Statistics
Matches: 464, Mismatches: 50, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
18 16 0.03
21 1 0.00
24 1 0.00
25 40 0.09
26 48 0.10
27 358 0.77
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:110035990 original size:18 final size:18
Alignment explanation
Indices: 110035967--110036002 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
110035957 GGTATTGCGA
110035967 TAATTCTACCCTACAGGG
1 TAATTCTACCCTACAGGG
110035985 TAATTCTACCCTACAGGG
1 TAATTCTACCCTACAGGG
110036003 GTATTTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
TAATTCTACCCTACAGGG
Found at i:110036001 original size:43 final size:45
Alignment explanation
Indices: 110035940--110036032 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
110035930 GGGGTATTTC
110035940 GGTAATTCTACCCTACA-GGTATTGCGATAATTCTACCCTAC-AG
1 GGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTACAAG
* *
110035983 GGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTACAAG
1 GGTAATTCTACCCTACA-GGGTATTGCGATAATTCTACCCTACAAG
110036029 GGTA
1 GGTA
110036033 TTACGATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 17 0.38
45 22 0.49
46 6 0.13
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
GGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTACAAG
Found at i:110036108 original size:151 final size:152
Alignment explanation
Indices: 110035670--110036142 Score: 578
Period size: 151 Copynumber: 3.1 Consensus size: 152
110035660 AAGGTATCTT
* ** ** * *
110035670 GGTAATTCCACCCTACAGGGGTATT-TTAGTAATTCTACCTTATAGGGGTATTTTA-G-TAATTC
1 GGTAATTCTACCCTACAGGGGTATTGCGA-TAATTCTACCCGACAAGGGTA--TTACGATAATTC
* * * * *
110035732 TACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGG
63 TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-G
*
110035797 GGTATTTCGGTAATTCTACCCTACAGGG
127 GGTATTGC-GTAATTCTACCCTACA-GG
* * *
110035825 GTATTTCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCGACAGGGGTATTTCGGTA
1 G------G-TAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCGACAAGGGTATTACGATA
*
110035890 ATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTA
59 ATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTA
110035955 CA-GGTATTGCGATAATTCTACCCTACA-G
124 CAGGGTATTGCG-TAATTCTACCCTACAGG
* * *
110035983 GGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTACAAGGGTATTACGATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCGACAAGGGTATTACGATAATTCTAC
*
110036048 CCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTA
66 CCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTA
* *
110036113 TTTCGTTATTCTACCCTACAGG
131 TTGCGTAATTCTACCCTACAGG
110036135 GGTAATTC
1 GGTAATTC
110036143 GATAATTCTA
Statistics
Matches: 283, Mismatches: 22, Indels: 29
0.85 0.07 0.09
Matches are distributed among these distances:
151 129 0.46
152 18 0.06
155 1 0.00
158 2 0.01
159 1 0.00
160 24 0.08
161 2 0.01
162 105 0.37
163 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (152 bp):
GGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCGACAAGGGTATTACGATAATTCTAC
CCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTA
TTGCGTAATTCTACCCTACAGG
Found at i:110036234 original size:27 final size:27
Alignment explanation
Indices: 110036204--110036256 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
110036194 TTTGTTTTGT
110036204 AAACCAAGGGCATTTTGGTAATTTTAC
1 AAACCAAGGGCATTTTGGTAATTTTAC
* *
110036231 AAACCAGGGGTATTTTGGTAATTTTA
1 AAACCAAGGGCATTTTGGTAATTTTA
110036257 TTGATCGAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (27 bp):
AAACCAAGGGCATTTTGGTAATTTTAC
Found at i:110036268 original size:27 final size:27
Alignment explanation
Indices: 110036210--110036450 Score: 156
Period size: 27 Copynumber: 8.9 Consensus size: 27
110036200 TTGTAAACCA
* *
110036210 AGGGCATTTTGGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAATCG
***
110036236 AGGGGTATTTTGGTAATTTTATTGATCG
1 A-GGGTATTTTGGTAATTTTACAAATCG
** *
110036264 AGGGTATTTTAATAATTTTGCAAA-CTG
1 AGGGTATTTTGGTAATTTTACAAATC-G
*
110036291 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
110036318 AGGATATTTGGGTAATTTGGTA-ATTTATTGATCG
1 AGGGTATTTTGGTAATTT--TACA---A---ATCG
* * *
110036352 AGGGTA-TTT-ATAATTTTGCAACT-G
1 AGGGTATTTTGGTAATTTTACAAATCG
*
110036376 A-GGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
110036402 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*
110036429 -GGGTACTTTGGTAATTTTACAA
1 AGGGTATTTTGGTAATTTTACAA
110036451 CTGGGGTATT
Statistics
Matches: 164, Mismatches: 34, Indels: 34
0.71 0.15 0.15
Matches are distributed among these distances:
23 4 0.02
24 4 0.02
25 12 0.07
26 22 0.13
27 95 0.58
28 5 0.03
29 2 0.01
30 1 0.01
31 2 0.01
32 6 0.04
33 2 0.01
34 9 0.05
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:110036396 original size:84 final size:89
Alignment explanation
Indices: 110036238--110036419 Score: 320
Period size: 84 Copynumber: 2.1 Consensus size: 89
110036228 TACAAACCAG
*
110036238 GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTAATAATTTTGCAAACTGAGGGTATTTCGG
1 GGGTAATTTGGTAATTTTATTGATCGAGGGTATTTTAATAATTTTGCAAACTGAGGGTATTTCGG
110036303 TAATTTTACAAATCGAGGATATTT
66 TAATTTTACAAATCGAGGATATTT
110036327 GGGTAATTTGGTAA-TTTATTGATCGAGGGTA-TTT-ATAATTTTGC-AACTGA-GGTATTTCGG
1 GGGTAATTTGGTAATTTTATTGATCGAGGGTATTTTAATAATTTTGCAAACTGAGGGTATTTCGG
110036387 TAATTTTACAAATCGAGGATATTT
66 TAATTTTACAAATCGAGGATATTT
110036411 GGGTAATTT
1 GGGTAATTT
110036420 TATAAACCGG
Statistics
Matches: 92, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
84 43 0.47
85 6 0.07
86 10 0.11
87 3 0.03
88 17 0.18
89 13 0.14
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (89 bp):
GGGTAATTTGGTAATTTTATTGATCGAGGGTATTTTAATAATTTTGCAAACTGAGGGTATTTCGG
TAATTTTACAAATCGAGGATATTT
Found at i:110036508 original size:27 final size:27
Alignment explanation
Indices: 110036472--110036638 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
110036462 AGTAATTCAT
110036472 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
110036499 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
*** *
110036526 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
110036553 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
110036580 AATCGAGGGTAAAATGGTAA-TTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
110036606 AATCGA-GGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
110036632 AATCGAG
1 AATCGAG
110036639 TACTTTGGTA
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
25 11 0.09
26 21 0.17
27 89 0.73
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:110036535 original size:54 final size:54
Alignment explanation
Indices: 110036463--110036638 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 54
110036453 GGGGTATTCA
110036463 GTAATTC-AT-AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATC-GAGGGTAAAATG
* * *** *
110036515 GTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATG
* *
110036569 GTAATTCTATAAATCGAGGGTAAAATGGTAA-TTTGTAAATCGA-GGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATG
110036621 GTAATTCTATAAATCGAG
1 GTAATTCTATAAATCGAG
110036639 TACTTTGGTA
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
52 31 0.29
53 12 0.11
54 63 0.59
55 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATG
Found at i:110036567 original size:81 final size:79
Alignment explanation
Indices: 110036464--110036638 Score: 248
Period size: 81 Copynumber: 2.2 Consensus size: 79
110036454 GGGTATTCAG
* *
110036464 TAATTC-AT-AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAA-TTTGTA
110036526 AATCGAGGGTAAAACAA
64 AATCGA-GGTAAAACAA
*
110036543 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTGTAAA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTGTAAA
* **
110036608 TCGAGGTGAAACGG
66 TCGAGGTAAAACAA
110036622 TAATTCTATAAATCGAG
1 TAATTCTATAAATCGAG
110036639 TACTTTGGTA
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
79 29 0.34
80 13 0.15
81 43 0.50
82 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (79 bp):
TAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTGTAAA
TCGAGGTAAAACAA
Found at i:110038632 original size:30 final size:30
Alignment explanation
Indices: 110038596--110038720 Score: 130
Period size: 30 Copynumber: 4.2 Consensus size: 30
110038586 AAGAAACATT
*
110038596 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAAAATCAGAATCAGA
* * *
110038626 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
* *
110038656 ATCA-ATATTAGTAAC-AGATCAGAATCAGA
1 ATCAGA-ATTAGGAACAAAATCAGAATCAGA
* *
110038685 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAAAATCAGAATCAGA
110038716 ATCAG
1 ATCAG
110038721 TAACAGAATC
Statistics
Matches: 79, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
29 22 0.28
30 37 0.47
31 20 0.25
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAAAATCAGAATCAGA
Found at i:110038709 original size:25 final size:24
Alignment explanation
Indices: 110038675--110038766 Score: 139
Period size: 25 Copynumber: 3.8 Consensus size: 24
110038665 AGTAACAGAT
110038675 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTA-GTGA
* *
110038700 CAGAATCAGAATCAGAATCAGTAA
1 CAGAATCAGAATCAGAATTAGTGA
110038724 CAGAATCAGAATCAGAATTACGTGA
1 CAGAATCAGAATCAGAATTA-GTGA
*
110038749 CAGAATCAGAACCAGAAT
1 CAGAATCAGAATCAGAAT
110038767 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 22 0.36
25 39 0.64
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (24 bp):
CAGAATCAGAATCAGAATTAGTGA
Found at i:110038759 original size:6 final size:6
Alignment explanation
Indices: 110038617--110038741 Score: 127
Period size: 6 Copynumber: 20.8 Consensus size: 6
110038607 AACCAAAATG
*
110038617 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
110038665 AGTAA-C AG-ATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
110038713 AGAATC AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAAT
110038742 TACGTGACAG
Statistics
Matches: 101, Mismatches: 6, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
4 1 0.01
5 9 0.09
6 82 0.81
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:110038987 original size:27 final size:26
Alignment explanation
Indices: 110038898--110038997 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
110038888 GCTCAGTTAT
* * *
110038898 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCA-AGCCACCAGAAA
110038925 CAGATATTGTGGCAAG-CACCAG-AA
1 CAGATATTGTGGCAAGCCACCAGAAA
110038949 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCA-AGCCACCAGAAA
*
110038977 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGC-AAGCCAC
110038998 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
24 7 0.11
25 14 0.22
26 4 0.06
27 31 0.48
28 9 0.14
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAAGCCACCAGAAA
Found at i:110039695 original size:27 final size:27
Alignment explanation
Indices: 110039638--110039975 Score: 426
Period size: 27 Copynumber: 12.9 Consensus size: 27
110039628 AAGGCAAAAT
* * *
110039638 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
110039664 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
110039691 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110039718 AGTAATTCTA-CCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110039744 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110039771 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
110039798 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110039825 GATAATTCTA-CCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110039851 GATAATTCTACCC-ACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110039876 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
110039903 GGTAATTCTACCCTACA--GGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110039927 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110039954 GATAA-TCTACCCTACAGGGGTA
1 GGTAATTCTACCCTACAGGGGTA
110039976 ATTCTACCCT
Statistics
Matches: 281, Mismatches: 22, Indels: 18
0.88 0.07 0.06
Matches are distributed among these distances:
24 20 0.07
25 24 0.09
26 91 0.32
27 146 0.52
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:110040019 original size:69 final size:70
Alignment explanation
Indices: 110039903--110040114 Score: 234
Period size: 70 Copynumber: 2.9 Consensus size: 70
110039893 AGGGTATTTC
* * *
110039903 GGTAATTCTACCCTACAGGTATTCGGTAATTCTACCCTACAGGGGTATTGCGATAA-TCTACCCT
1 GGTAATTCTACCCTACAGGTATTCGATAATTCTACCCTACAGAGGTATTACGATAATTCTACCCT
110039967 ACAGG
66 ACAGG
*
110039972 GGTAATTCTACCCTACAGGTATTTCGATAATTTTACCCTACA-AGGTATTACGATAATTCTACCC
1 GGTAATTCTACCCTACAGGTA-TTCGATAATTCTACCCTACAGAGGTATTACGATAATTCTACCC
110040036 TACAGG
65 TACAGG
* * *
110040042 GGTATTTCAGTAATTCTACCTACAGGGGTATTTCGGTAATTCTACCCTACAG-GG-ATTTCGATA
1 GGTAATTC--T-A--C--CCTACA--GGTA-TTCGATAATTCTACCCTACAGAGGTATTACGATA
110040105 ATTCTACCCT
56 ATTCTACCCT
110040115 CCAACATCAG
Statistics
Matches: 123, Mismatches: 8, Indels: 15
0.84 0.05 0.10
Matches are distributed among these distances:
69 33 0.27
70 38 0.31
72 1 0.01
73 1 0.01
75 1 0.01
77 6 0.05
78 18 0.15
79 25 0.20
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (70 bp):
GGTAATTCTACCCTACAGGTATTCGATAATTCTACCCTACAGAGGTATTACGATAATTCTACCCT
ACAGG
Found at i:110040025 original size:26 final size:26
Alignment explanation
Indices: 110039974--110040114 Score: 173
Period size: 26 Copynumber: 5.5 Consensus size: 26
110039964 CCTACAGGGG
110039974 TAATTCTACCCTAC-AGGTATTTCGA
1 TAATTCTACCCTACAAGGTATTTCGA
* *
110039999 TAATTTTACCCTACAAGGTATTACGA
1 TAATTCTACCCTACAAGGTATTTCGA
*
110040025 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACA-AGGTATTTCGA
* *
110040051 GTAATTCTA-CCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACA-AGGTATTTCGA
*
110040078 TAATTCTACCCTAC-AGGGATTTCGA
1 TAATTCTACCCTACAAGGTATTTCGA
110040103 TAATTCTACCCT
1 TAATTCTACCCT
110040115 CCAACATCAG
Statistics
Matches: 102, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
25 33 0.32
26 49 0.48
27 20 0.20
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
TAATTCTACCCTACAAGGTATTTCGA
Found at i:110040072 original size:53 final size:51
Alignment explanation
Indices: 110039720--110040112 Score: 366
Period size: 51 Copynumber: 7.7 Consensus size: 51
110039710 GGTATTTTAG
* * * *
110039720 TAATTCTA-CCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGA
1 TAATTCTACCCTACA-GGGTATTTCGATAATTCTA-CCTACA-AGGTATTACGA
* * *
110039773 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACA-GGGTATTTCGATAATTCTA-CCTACA-AGGTATTACGA
* * * * *
110039827 TAATTCTA-CCTACAGGGGTATTGCGATAATTCTACCCACAGGGTATTTCGG
1 TAATTCTACCCTACA-GGGTATTTCGATAATTCTACCTACAAGGTATTACGA
* *
110039878 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC-AGGTATT-CGG
1 TAATTCTACCCTAC-AGGGTATTTCGATAATTCTA-CCTACAAGGTATTACGA
* *
110039929 TAATTCTACCCTACAGGGGTATTGCGATAA-TCTACCCTAC-AGG------GG
1 TAATTCTACCCTACA-GGGTATTTCGATAATTCTA-CCTACAAGGTATTACGA
*
110039974 TAATTCTACCCTACA-GGTATTTCGATAATTTTACCCTACAAGGTATTACGA
1 TAATTCTACCCTACAGGGTATTTCGATAATTCTA-CCTACAAGGTATTACGA
* * *
110040025 TAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCTACAGGGGTATTTCGG
1 TAATTCTACCCTACA-GGGTATTTCGA-TAATTCTACCTACA-AGGTATTACGA
110040078 TAATTCTACCCTACAGGG-ATTTCGATAATTCTACC
1 TAATTCTACCCTACAGGGTATTTCGATAATTCTACC
110040113 CTCCAACATC
Statistics
Matches: 303, Mismatches: 19, Indels: 38
0.84 0.05 0.11
Matches are distributed among these distances:
43 12 0.04
44 9 0.03
45 20 0.07
50 14 0.05
51 78 0.26
52 44 0.15
53 75 0.25
54 51 0.17
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (51 bp):
TAATTCTACCCTACAGGGTATTTCGATAATTCTACCTACAAGGTATTACGA
Found at i:110041643 original size:30 final size:30
Alignment explanation
Indices: 110041607--110041753 Score: 158
Period size: 30 Copynumber: 4.9 Consensus size: 30
110041597 AAGAAACATT
* *
110041607 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
110041637 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
110041667 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
110041697 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
110041728 ATCAGTAA-CA-GAATCAGAATCAGAAT
1 ATCAG-AATTAGGAA-CAGAATCAGAAT
110041754 TACGTGACAG
Statistics
Matches: 102, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.02
30 71 0.70
31 27 0.26
32 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:110041721 original size:25 final size:24
Alignment explanation
Indices: 110041628--110041777 Score: 122
Period size: 24 Copynumber: 5.7 Consensus size: 24
110041618 AACCAAAATG
* *
110041628 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
*
110041652 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAG-----A-ATTAGTGAC
110041682 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATC--A----GAATTA-GTGAC
* *
110041713 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
110041737 AGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATTA-GTGAC
110041762 AGAATCAGAA-CAGAAT
1 AGAATCAGAATCAGAAT
110041778 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 6, Indels: 28
0.76 0.04 0.20
Matches are distributed among these distances:
24 42 0.40
25 19 0.18
29 2 0.02
30 24 0.23
31 17 0.16
32 1 0.01
36 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTGAC
Found at i:110041771 original size:6 final size:6
Alignment explanation
Indices: 110041628--110041753 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
110041618 AACCAAAATG
*
110041628 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
110041676 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
110041725 AGAATC AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAAT
110041754 TACGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:110041951 original size:27 final size:26
Alignment explanation
Indices: 110041909--110042010 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
110041899 GCTCAGTTAT
* *
110041909 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
110041936 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
110041962 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
110041990 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
110042011 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:110042194 original size:22 final size:22
Alignment explanation
Indices: 110042166--110042230 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
110042156 GCAAATACGT
*
110042166 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
110042188 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
110042210 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
110042231 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:110042748 original size:25 final size:24
Alignment explanation
Indices: 110042655--110042805 Score: 122
Period size: 24 Copynumber: 5.7 Consensus size: 24
110042645 AGGCAAAATG
* *
110042655 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
*
110042679 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAG-----A-ATTAGTGAC
110042709 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATC--A----GAATTA-GTGAC
* *
110042740 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
110042764 AGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATTA-GTGAC
*
110042789 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
110042806 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 7, Indels: 27
0.76 0.05 0.19
Matches are distributed among these distances:
24 36 0.34
25 25 0.24
29 2 0.02
30 24 0.23
31 17 0.16
32 1 0.01
36 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTGAC
Found at i:110042798 original size:6 final size:6
Alignment explanation
Indices: 110042655--110042780 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
110042645 AGGCAAAATG
*
110042655 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
110042703 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
110042752 AGAATC AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAAT
110042781 TACGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:110042979 original size:27 final size:26
Alignment explanation
Indices: 110042937--110043038 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
110042927 GCTCAGTTAT
* *
110042937 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
110042964 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
110042990 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
110043018 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
110043039 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:110043742 original size:27 final size:27
Alignment explanation
Indices: 110043685--110044236 Score: 702
Period size: 27 Copynumber: 21.0 Consensus size: 27
110043675 AAGGCAAAAT
* * *
110043685 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
110043711 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
110043738 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110043765 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110043792 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110043819 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
110043846 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110043873 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110043900 GATAATTCTACCCGACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110043926 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
110043953 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110043980 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110044007 GATAATTCTACCCTACA---G------
1 GGTAATTCTACCCTACAGGGGTATTTC
110044025 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
110044052 GATAATTTTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110044079 GATAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110044105 AGTAATTCTA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
110044131 GGTAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110044157 GGTTATTCTACCCTACAGGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
110044184 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110044211 GGTAATTCTACGCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
110044237 TTGTAATTTT
Statistics
Matches: 465, Mismatches: 46, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
18 16 0.03
21 1 0.00
24 1 0.00
25 6 0.01
26 98 0.21
27 343 0.74
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:110044032 original size:18 final size:18
Alignment explanation
Indices: 110044009--110044044 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
110043999 GGTATTGCGA
110044009 TAATTCTACCCTACAGGG
1 TAATTCTACCCTACAGGG
110044027 TAATTCTACCCTACAGGG
1 TAATTCTACCCTACAGGG
110044045 GTATTTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
TAATTCTACCCTACAGGG
Found at i:110044044 original size:45 final size:46
Alignment explanation
Indices: 110043980--110044074 Score: 165
Period size: 45 Copynumber: 2.1 Consensus size: 46
110043970 GGGGTATTTC
110043980 GGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTAC-AG
1 GGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAAG
* *
110044025 GGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTACAAG
1 GGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAAG
110044071 GGTA
1 GGTA
110044075 TTACGATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 41 0.87
46 6 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (46 bp):
GGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAAG
Found at i:110044074 original size:72 final size:72
Alignment explanation
Indices: 110043953--110044235 Score: 316
Period size: 72 Copynumber: 3.7 Consensus size: 72
110043943 AGGGTATTTC
* *
110043953 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTACGATAATTCTAC
110044018 CCTACAG
66 CCTACAG
* *
110044025 GGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTACAAGGGTATTACGATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTACGATAATTCTAC
110044090 CCTACAG
66 CCTACAG
* * * *
110044097 GGTATTTCAGTAATTCTACCTACAGGGGTATTTCGGTAATTCTACCCTAC-AGGGTATTTCGGTT
1 GGTAATTC--T-A--C--CCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTACGATA
110044161 ATTCTACCCTACAGG
59 ATTCTACCCTACA-G
* * *
110044176 GGTAATTCGATAATTCTAACCTACAGGGGTATTCCGGTAATTCTACGCTACAGGGGTATT
1 GGTAATTC--T-A--C---CCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATT
110044236 TTTGTAATTT
Statistics
Matches: 184, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
72 75 0.41
74 1 0.01
75 1 0.01
77 1 0.01
78 24 0.13
79 44 0.24
80 31 0.17
81 7 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (72 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTACGATAATTCTAC
CCTACAG
Done.