Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 353 of 438
Found at i:110044263 original size:27 final size:26
Alignment explanation
Indices: 110044233--110044291 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
110044223 CTACAGGGGT
**
110044233 ATTTTTGTAATTTTGTAAACCAAGGGC
1 ATTTTTGTAATTTTACAAACC-AGGGC
* *
110044260 ATTTTGGTAATTTTACAAACCAGGGT
1 ATTTTTGTAATTTTACAAACCAGGGC
110044286 ATTTTT
1 ATTTTT
110044292 AATTGATCGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (26 bp):
ATTTTTGTAATTTTACAAACCAGGGC
Found at i:110044343 original size:27 final size:26
Alignment explanation
Indices: 110044313--110044465 Score: 107
Period size: 27 Copynumber: 5.8 Consensus size: 26
110044303 GGTATTTTAA
*
110044313 TAATTTTGCAAACTGAGGGTATTTCGG
1 TAATTTTACAAACTGAGGGTATTT-GG
*
110044340 TAATTTTACAAA-TCGAGGATATTTGGG
1 TAATTTTACAAACT-GAGGGTATTT-GG
* *
110044367 TAATTTTATAAACCG-GGGTACTTTGG
1 TAATTTTACAAACTGAGGGTA-TTTGG
* *
110044393 TAATTTTAC-AACTGGGGGTATTTCAG
1 TAATTTTACAAACTGAGGGTATTT-GG
* * * **
110044419 TAATTTCATAATC-GAGGGTAAAATGG
1 TAATTTTACAAACTGAGGGT-ATTTGG
**
110044445 TAATTTTGTAAACTGAGGGTA
1 TAATTTTACAAACTGAGGGTA
110044466 AAATGTAATT
Statistics
Matches: 99, Mismatches: 19, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
25 7 0.07
26 45 0.45
27 47 0.47
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.37
Consensus pattern (26 bp):
TAATTTTACAAACTGAGGGTATTTGG
Found at i:110044363 original size:54 final size:53
Alignment explanation
Indices: 110044297--110044403 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
110044287 TTTTTAATTG
* * * *
110044297 ATCGAGGGTATTTTAATAATTTTGCAAACTGAGGGTA-TTTCGGTAATTTTACAA
1 ATCGAGGATATTTGAATAATTTTACAAACCG-GGGTACTTT-GGTAATTTTACAA
** *
110044351 ATCGAGGATATTTGGGTAATTTTATAAACCGGGGTACTTTGGTAATTTTACAA
1 ATCGAGGATATTTGAATAATTTTACAAACCGGGGTACTTTGGTAATTTTACAA
110044404 CTGGGGGTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 18 0.40
54 27 0.60
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (53 bp):
ATCGAGGATATTTGAATAATTTTACAAACCGGGGTACTTTGGTAATTTTACAA
Found at i:110044437 original size:26 final size:25
Alignment explanation
Indices: 110044327--110044438 Score: 68
Period size: 26 Copynumber: 4.3 Consensus size: 25
110044317 TTTGCAAACT
110044327 GAGGGTATTTCGGTAATTTTACAAATC
1 GAGGGTATTTCGGTAA-TTT-CAAATC
* * * *
110044354 GAGGATATTTGGGTAATTTTATAAACC
1 GAGGGTATTTCGGTAA-TTT-CAAATC
*
110044381 G-GGGTACTTT-GGTAATTTTACAA-C
1 GAGGGTA-TTTCGGTAATTTCA-AATC
* *
110044405 TGGGGGTATTTCAGTAATTTCATAATC
1 -GAGGGTATTTCGGTAATTTCA-AATC
110044432 GAGGGTA
1 GAGGGTA
110044439 AAATGGTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
24 3 0.04
25 9 0.13
26 30 0.43
27 28 0.40
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.37
Consensus pattern (25 bp):
GAGGGTATTTCGGTAATTTCAAATC
Found at i:110044438 original size:52 final size:54
Alignment explanation
Indices: 110044322--110044438 Score: 125
Period size: 52 Copynumber: 2.2 Consensus size: 54
110044312 ATAATTTTGC
* ** *
110044322 AAACTGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTAT
1 AAACCGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTCAGTAATTTCAT
* * *
110044376 AAACCG-GGGTACTTT-GGTAATTTTACAACT-GGGGGTATTTCAGTAATTTCAT
1 AAACCGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTCAGTAATTTCAT
*
110044428 -AATCGAGGGTA
1 AAACCGAGGGTA
110044439 AAATGGTAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
51 4 0.08
52 22 0.42
53 19 0.36
54 8 0.15
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.36
Consensus pattern (54 bp):
AAACCGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTCAGTAATTTCAT
Found at i:110044466 original size:27 final size:27
Alignment explanation
Indices: 110044428--110044598 Score: 222
Period size: 27 Copynumber: 6.4 Consensus size: 27
110044418 GTAATTTCAT
110044428 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
110044455 AA-CTGAGGGTAAAAT-GTAA-TTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
*** *
110044480 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
110044507 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
110044534 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
110044561 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
110044588 AATCGAGGGTA
1 AATCGAGGGTA
110044599 CTTTGGTAAT
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
25 18 0.14
26 9 0.07
27 99 0.79
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:110044555 original size:54 final size:54
Alignment explanation
Indices: 110044428--110044598 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 54
110044418 GTAATTTCAT
*
110044428 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAAT-GTAATT-TGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
*** *
110044480 AATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* *
110044534 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
110044588 AATCGAGGGTA
1 AATCGAGGGTA
110044599 CTTTGGTAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
52 36 0.34
53 7 0.07
54 62 0.59
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:110044606 original size:27 final size:27
Alignment explanation
Indices: 110044418--110044622 Score: 211
Period size: 27 Copynumber: 7.7 Consensus size: 27
110044408 GGGTATTTCA
*
110044418 GTAATTTCAT-AATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
110044444 GTAATTTTGTAAA-CTGAGGGTAAAAT-
1 GTAATTTTATAAATC-GAGGGTAAAATG
* **
110044470 GTAA-TTTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
110044496 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
110044523 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
110044550 GTAATTTTGTAAATCGAGGGTGAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* ***
110044577 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
110044604 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATCGAGG
110044623 ACATTTTAGT
Statistics
Matches: 151, Mismatches: 23, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
25 18 0.12
26 17 0.11
27 116 0.77
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:110044609 original size:81 final size:79
Alignment explanation
Indices: 110044428--110044598 Score: 254
Period size: 81 Copynumber: 2.1 Consensus size: 79
110044418 GTAATTTCAT
* *
110044428 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGTAATTTGTAAATCGAGGGTAAA
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGTAATTTGTAAATCGAGGGTAAA
*
110044493 ACAATAATTCTGTA
66 ACAATAATTCTATA
110044507 AATCGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAACT-GAGGGTAAAAT-GTAA-TTTGTAAATCGAGGGT
* **
110044571 GAAACGGTAATTCTATA
63 AAAACAATAATTCTATA
110044588 AATCGAGGGTA
1 AATCGAGGGTA
110044599 CTTTGGTAAT
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 38 0.46
80 4 0.05
81 40 0.48
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (79 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGTAATTTGTAAATCGAGGGTAAA
ACAATAATTCTATA
Found at i:110046617 original size:30 final size:30
Alignment explanation
Indices: 110046581--110046727 Score: 158
Period size: 30 Copynumber: 4.9 Consensus size: 30
110046571 AAGAAACATT
* *
110046581 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
110046611 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
110046641 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
110046671 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
110046702 ATCAGTAA-CA-GAATCAGAATCAGAAT
1 ATCAG-AATTAGGAA-CAGAATCAGAAT
110046728 TACGTGACAG
Statistics
Matches: 102, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.02
30 71 0.70
31 27 0.26
32 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:110046695 original size:25 final size:24
Alignment explanation
Indices: 110046602--110046752 Score: 122
Period size: 24 Copynumber: 5.7 Consensus size: 24
110046592 AACCAAAATG
* *
110046602 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
*
110046626 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAG-----A-ATTAGTGAC
110046656 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATC--A----GAATTA-GTGAC
* *
110046687 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
110046711 AGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATTA-GTGAC
*
110046736 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
110046753 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 7, Indels: 27
0.76 0.05 0.19
Matches are distributed among these distances:
24 36 0.34
25 25 0.24
29 2 0.02
30 24 0.23
31 17 0.16
32 1 0.01
36 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTGAC
Found at i:110046745 original size:6 final size:6
Alignment explanation
Indices: 110046602--110046727 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
110046592 AACCAAAATG
*
110046602 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
110046650 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
110046699 AGAATC AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAAT
110046728 TACGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:110046926 original size:27 final size:26
Alignment explanation
Indices: 110046884--110046985 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
110046874 GCTCAGTTAT
* *
110046884 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
110046911 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
110046937 CAAATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
110046965 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
110046986 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.09
27 53 0.80
28 7 0.11
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:110047171 original size:22 final size:22
Alignment explanation
Indices: 110047143--110047207 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
110047133 GCAAATACGT
*
110047143 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
110047165 TTGGCACAGAGCCATATAT-AGG
1 TTGGCACAAAGCCATA-ATCAGG
* *
110047187 TTGACACAAAGCCATGATCAG
1 TTGGCACAAAGCCATAATCAG
110047208 AAGGTTTAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:110047689 original size:27 final size:27
Alignment explanation
Indices: 110047632--110048190 Score: 682
Period size: 27 Copynumber: 21.3 Consensus size: 27
110047622 AAGGCAAAAT
* * *
110047632 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
110047658 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
110047685 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110047712 AGTAATTCTACCCTATA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110047738 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110047765 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110047792 GATAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110047818 GATAATTCTACCCTACA-GGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110047844 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110047871 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
110047898 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110047925 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110047952 GATAATTCTACCCTACA--GG-A----
1 GGTAATTCTACCCTACAGGGGTATTTC
110047972 -GTAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
110047997 GATAATTTTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110048024 GATAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110048050 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110048077 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
110048104 GGTTATTCTACCCTACA-GGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
110048130 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110048157 GGTAATTCTACGCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
110048184 TGTAATT
1 GGTAATT
110048191 TTGTAAACCA
Statistics
Matches: 475, Mismatches: 44, Indels: 27
0.87 0.08 0.05
Matches are distributed among these distances:
19 15 0.03
20 2 0.00
21 1 0.00
24 1 0.00
25 2 0.00
26 150 0.32
27 304 0.64
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:110047743 original size:53 final size:53
Alignment explanation
Indices: 110047632--110048190 Score: 620
Period size: 53 Copynumber: 10.6 Consensus size: 53
110047622 AAGGCAAAAT
* * * * * *
110047632 GGTAATTTTACCCCACA-AGGTATCTTGGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACA-GGGTATTTC
* * * * *
110047685 AGTAATTCTACCTTATAGGGGTATTTTAGTAATTCTACCCTATAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTC
* ** *
110047738 GGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACA-GGGTATTTC
* * * *
110047792 GATAATTCTACCCTACA-GGGTATTTCGATAATTCTACCCTACAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTC
* *
110047844 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTAC-AGGGTATTTC
* *
110047898 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACA-GGGTATTTC
*
110047952 GATAATTCTACCCTACA--GG-A-----GTAATTCTACCCTACAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTC
* * * ** *
110047997 GATAATTTTACCCTACAAGGGTATTACGATAATTCTACCCTACAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTC
* *
110048050 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTAC-AGGGTATTTC
* * * * * *
110048104 GGTTATTCTACCCTACA-GGGTAATTCGATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACA-GGGTATTTC
*
110048157 GGTAATTCTACGCTACAGGGGTATTTCT-GTAATT
1 GGTAATTCTACCCTACAGGGGTATTT-TGGTAATT
110048191 TTGTAAACCA
Statistics
Matches: 442, Mismatches: 47, Indels: 33
0.85 0.09 0.06
Matches are distributed among these distances:
45 24 0.05
46 16 0.04
47 2 0.00
48 1 0.00
51 1 0.00
52 28 0.06
53 213 0.48
54 157 0.36
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (53 bp):
GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTC
Found at i:110047771 original size:80 final size:80
Alignment explanation
Indices: 110047633--110048190 Score: 644
Period size: 80 Copynumber: 7.1 Consensus size: 80
110047623 AGGCAAAATG
* * * * *
110047633 GTAATTTTACCCCACAAGGTATCTT-GGTAATTCCACCCTACAGGGGTATTT-TAGTAATTCTAC
1 GTAATTCTACCCTACAGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTAC
* *
110047696 CTTATAGGGGTATTTTA
64 CCTACAGGGGTATTTTA
* * *
110047713 GTAATTCTACCCTATAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACCC
1 GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
*
110047778 TACAGGGGTA-TTTC
66 TACAGGGGTATTTTA
* *
110047792 GATAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACA-GGGTATTGCGATAATTCTACC
1 G-TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
**
110047856 CTACAGGGGTATTTCG
65 CTACAGGGGTATTTTA
*
110047872 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
**
110047937 CTACAGGGGTA-TTGC
65 CTACAGGGGTATTTTA
*
110047952 GATAATTCTACCCTACA-GG-A-----GTAATTCTACCCTACA-GGGTATTTCGATAATTTTACC
1 G-TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
*
110048009 CTACAAGGGTA--TTA
65 CTACAGGGGTATTTTA
* *
110048023 CGATAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 -G-TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
* **
110048088 CCTACAAGGGTATTTCG
64 CCTACAGGGGTATTTTA
* * * * * * *
110048105 GTTATTCTACCCTACAGGGTAATTCGATAATTCTAACCTACAGGGGTATTCCGGTAATTCTACGC
1 GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
110048170 TACAGGGGTATTTCT-
66 TACAGGGGTATTT-TA
110048185 GTAATT
1 GTAATT
110048191 TTGTAAACCA
Statistics
Matches: 419, Mismatches: 40, Indels: 38
0.84 0.08 0.08
Matches are distributed among these distances:
71 1 0.00
72 46 0.11
73 18 0.04
74 1 0.00
78 1 0.00
79 70 0.17
80 235 0.56
81 46 0.11
82 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
TACAGGGGTATTTTA
Found at i:110048237 original size:26 final size:27
Alignment explanation
Indices: 110048175--110048246 Score: 94
Period size: 26 Copynumber: 2.7 Consensus size: 27
110048165 TACGCTACAG
**
110048175 GGGTATTTCT-GTAATTTTGTAAACCAA
1 GGGTATTT-TGGTAATTTTACAAACCAA
*
110048202 GGGCATTTTGGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
110048228 GGGTATTTTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
110048247 TTGATCGAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 20 0.50
27 20 0.50
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:110048557 original size:27 final size:27
Alignment explanation
Indices: 110048374--110048546 Score: 240
Period size: 27 Copynumber: 6.4 Consensus size: 27
110048364 GTAATTTCAT
*
110048374 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
110048401 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
***
110048428 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
110048455 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
110048482 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
110048509 AATCGAGGATGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
110048536 AATCGAGGGTA
1 AATCGAGGGTA
110048547 CTTTGGTAAT
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:110048557 original size:81 final size:81
Alignment explanation
Indices: 110048374--110048546 Score: 276
Period size: 81 Copynumber: 2.1 Consensus size: 81
110048364 GTAATTTCAT
* * *
110048374 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGATA
110048439 AAACAATAATTCTGTA
66 AAACAATAATTCTGTA
110048455 AATCGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAATGGTAATTTTGTAAATCGAGGAT
1 AATCGAGGGTAAAATGGTAATTCTATAAACT-GAGGGTAAAATGGTAATTTTGTAAATCGAGGAT
* **
110048519 GAAACGGTAATTCTGTA
65 AAAACAATAATTCTGTA
110048536 AATCGAGGGTA
1 AATCGAGGGTA
110048547 CTTTGGTAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
80 1 0.01
81 84 0.99
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGATA
AAACAATAATTCTGTA
Found at i:110048565 original size:27 final size:27
Alignment explanation
Indices: 110048185--110048570 Score: 140
Period size: 27 Copynumber: 14.7 Consensus size: 27
110048175 GGGTATTTCT
* * * * *
110048185 GTAATTTTGTAAACCAAGGGCATTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * *
110048212 GTAATTTTACAAA-CCAGGGTATTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
** *
110048238 GTAATTTTATTGATCGAGGGT-ATTTCA
1 GTAATTTTATAAATCGAGGGTAATTT-G
** * *
110048265 GTAA-TTTGCAAA-CTGAGGGT-CTTTCT
1 GTAATTTTATAAATC-GAGGGTAATTT-G
* *
110048291 GTAATTTTACAAATCGAGGAT-A-TT-
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
110048315 -TAATTTTATAAA-C--CGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * * *
110048338 GTAATTTTACAACT-GGGGGT-ATTTCA
1 GTAATTTTATAAATCGAGGGTAATTT-G
* **
110048364 GTAATTTCAT-AATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAATTTG
* **
110048390 GTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAATTTTATAAATC-GAGGGTAATTTG
* ****
110048417 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAATTTG
* * * **
110048444 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAATTTG
* **
110048471 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * **
110048498 GTAATTTTGTAAATCGAGGATGAA-ACG
1 GTAATTTTATAAATCGAGGGT-AATTTG
* * *
110048525 GTAATTCTGTAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
110048552 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATCGAGG
110048571 ACATTTTAGT
Statistics
Matches: 281, Mismatches: 58, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
20 2 0.01
22 3 0.01
23 11 0.04
24 10 0.04
25 6 0.02
26 70 0.25
27 175 0.62
28 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.35
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAATTTG
Found at i:110048583 original size:81 final size:81
Alignment explanation
Indices: 110048374--110048591 Score: 213
Period size: 81 Copynumber: 2.7 Consensus size: 81
110048364 GTAATTTCAT
* ** ** * *
110048374 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTACAAATC-GAGGACAAAATAGTAATTTTGTAAATCGAGGAT
110048438 AAAACAATAATTCTGTA
65 AAAACAATAATTCTGTA
* ** * *
110048455 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGATG
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAATCGAGGATA
**
110048520 AAACGGTAATTCTGTA
66 AAACAATAATTCTGTA
*** * * *** *
110048536 AATCGAGGGTACTTTGGTAATTTTACAAATTGAGGACATTTTAGTAATTTGGTAAA
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAA
110048592 CTAAAGTATT
Statistics
Matches: 117, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 116 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAATCGAGGATA
AAACAATAATTCTGTA
Found at i:110050573 original size:30 final size:30
Alignment explanation
Indices: 110050537--110050683 Score: 158
Period size: 30 Copynumber: 4.9 Consensus size: 30
110050527 AAGAAACATT
* *
110050537 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
110050567 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
110050597 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
110050627 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
110050658 ATCAGTAA-CA-GAATCAGAATCAGAAT
1 ATCAG-AATTAGGAA-CAGAATCAGAAT
110050684 TACGTGACAG
Statistics
Matches: 102, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.02
30 71 0.70
31 27 0.26
32 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:110050651 original size:25 final size:24
Alignment explanation
Indices: 110050558--110050708 Score: 122
Period size: 24 Copynumber: 5.7 Consensus size: 24
110050548 AACCAAAATG
* *
110050558 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
*
110050582 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAG-----A-ATTAGTGAC
110050612 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATC--A----GAATTA-GTGAC
* *
110050643 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
110050667 AGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATTA-GTGAC
*
110050692 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
110050709 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 7, Indels: 27
0.76 0.05 0.19
Matches are distributed among these distances:
24 36 0.34
25 25 0.24
29 2 0.02
30 24 0.23
31 17 0.16
32 1 0.01
36 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTGAC
Found at i:110050701 original size:6 final size:6
Alignment explanation
Indices: 110050558--110050683 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
110050548 AACCAAAATG
*
110050558 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
110050606 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
110050655 AGAATC AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAAT
110050684 TACGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:110050882 original size:27 final size:26
Alignment explanation
Indices: 110050840--110050941 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
110050830 GCTCAGTTAT
* *
110050840 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
110050867 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
110050893 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
110050921 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
110050942 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:110051127 original size:22 final size:21
Alignment explanation
Indices: 110051099--110051163 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
110051089 GCAAATACGT
*
110051099 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
*
110051121 TTGGCACAGAA-CCATATGTAGG
1 TTGGCACA-AAGCCATAT-CAGG
*
110051143 TTGACACAAAGCCATGATCAG
1 TTGGCACAAAGCCAT-ATCAG
110051164 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 4 0.11
22 28 0.80
23 3 0.09
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:110051651 original size:21 final size:22
Alignment explanation
Indices: 110051627--110051703 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 22
110051617 TAATTCCACC
110051627 CTAC-AGGGTATTTTAGTAATT
1 CTACTAGGGTATTTTAGTAATT
110051648 CTACCTTATAGGGTATTTTAGTAATT
1 CTA-C---TAGGGTATTTTAGTAATT
*
110051674 CTACCCTATAGGGTATTTTGGTAATT
1 CTA--C--TAGGGTATTTTAGTAATT
110051700 CTAC
1 CTAC
110051704 CCTACAAGGG
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
21 3 0.06
22 1 0.02
24 1 0.02
26 42 0.86
27 2 0.04
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (22 bp):
CTACTAGGGTATTTTAGTAATT
Found at i:110051725 original size:27 final size:27
Alignment explanation
Indices: 110051589--110052175 Score: 666
Period size: 27 Copynumber: 22.3 Consensus size: 27
110051579 AAGGCAAAAT
* *
110051589 GGTAATTTTACCCCACAA-GGTATCTT-
1 GGTAATTCTACCCTACAAGGGTAT-TTC
* *
110051615 GGTAATTCCACCCTAC-AGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
110051641 AGTAATTCTACCTTA-TAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
110051667 AGTAATTCTACCCTA-TAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110051693 GGTAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110051720 GATAATTCTACCCTAC-AGGGCTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
110051747 GGTAATTCTTCCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
110051773 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
110051800 GATAATTCTACCCTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
110051827 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110051854 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110051881 GGTAATTCTACCCTAC-AGGGTATTGC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
110051907 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110051934 GATAATTCTACCCTAC-A-GG------
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110051953 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
110051980 GATAATTTTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
110052007 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
110052034 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
110052061 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
110052088 GGTTATTCTACCCTACAGGGGTAATTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
110052115 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
110052142 GGTAATTCTACGCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110052169 TGTAATT
1 GGTAATT
110052176 TTGTAAACCA
Statistics
Matches: 490, Mismatches: 56, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
19 15 0.03
21 2 0.00
25 5 0.01
26 127 0.26
27 341 0.70
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:110051960 original size:19 final size:19
Alignment explanation
Indices: 110051936--110051975 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
110051926 GGTATTGCGA
110051936 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
110051955 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
110051974 TA
1 TA
110051976 TTTCGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (19 bp):
TAATTCTACCCTACAGGGG
Found at i:110052194 original size:27 final size:27
Alignment explanation
Indices: 110052170--110052340 Score: 101
Period size: 27 Copynumber: 6.4 Consensus size: 27
110052160 GGGTATTTCT
**
110052170 GTAATTTTGTAAACCAAGGGCATTTTG
1 GTAATTTTACAAACCAAGGGCATTTTG
* *
110052197 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGCATTTTG
*** * * * **
110052224 GTAATTTTATTGATCGAGGGTATTTCA
1 GTAATTTTACAAACCAAGGGCATTTTG
* * ** * *
110052251 ATAATTTTGCAAACTGAGGGTATTTCG
1 GTAATTTTACAAACCAAGGGCATTTTG
* * ** *
110052278 GTAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTACAAACCAAGGGCATTTTG
* * *
110052305 GTAATTTTATAAACC-AGGGTACTTTG
1 GTAATTTTACAAACCAAGGGCATTTTG
110052331 GTAATTTTAC
1 GTAATTTTAC
110052341 TACTGGGGTA
Statistics
Matches: 112, Mismatches: 32, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
26 17 0.15
27 95 0.85
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACCAAGGGCATTTTG
Found at i:110052215 original size:81 final size:81
Alignment explanation
Indices: 110052130--110052290 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 81
110052120 TTCTAACCTA
* ** *
110052130 CAGGGGTATTCCGGTAATTCTA-CGCTAC-AGGGGTATTTCTGTAATTTTGTAAACCAAGGGCAT
1 CAGGGGTATTCCGGTAATTCTATCGAT-CGA-GGGTATTTCAATAATTTTGCAAACCAAGGGCAT
*
110052193 TTTGGTAATTTTACAAAC
64 TTCGGTAATTTTACAAAC
** * * ** *
110052211 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTCAATAATTTTGCAAACTGAGGGTATTT
1 CAGGGGTATTCCGGTAATTCTATCGATCGAGGGTATTTCAATAATTTTGCAAACCAAGGGCATTT
110052276 CGGTAATTTTACAAA
66 CGGTAATTTTACAAA
110052291 TCGAGGATAT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
81 63 0.95
82 3 0.05
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.37
Consensus pattern (81 bp):
CAGGGGTATTCCGGTAATTCTATCGATCGAGGGTATTTCAATAATTTTGCAAACCAAGGGCATTT
CGGTAATTTTACAAAC
Found at i:110052256 original size:54 final size:54
Alignment explanation
Indices: 110052198--110052340 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 54
110052188 GGCATTTTGG
*** *
110052198 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTCAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCGAGGATATTTCAA
* * * ***
110052252 TAATTTTGCAAA-CTGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAATCGAGGATATTTCAA
* *
110052306 TAATTTTATAAACCA-GGGTACTTTGGTAATTTTAC
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
110052341 TACTGGGGTA
Statistics
Matches: 72, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
53 20 0.28
54 51 0.71
55 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCGAGGATATTTCAA
Found at i:110052302 original size:81 final size:81
Alignment explanation
Indices: 110052160--110052314 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 81
110052150 TACGCTACAG
** * * * *
110052160 GGGTATTTCTGTAATTTTGTAAACCAAGGGCATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTCAATAATTTTGCAAACCAAGGGCATTTCGGTAATTTTACAAACCAGGGATATTTGGG
110052225 TAATTTTATTGATCGA
66 TAATTTTATTGATCGA
** * *
110052241 GGGTATTTCAATAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAATC-GAGGATATTTGG
1 GGGTATTTCAATAATTTTGCAAACCAAGGGCATTTCGGTAATTTTACAAACCAG-GGATATTTGG
110052305 GTAATTTTAT
65 GTAATTTTAT
110052315 AAACCAGGGT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 62 0.98
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAATAATTTTGCAAACCAAGGGCATTTCGGTAATTTTACAAACCAGGGATATTTGGG
TAATTTTATTGATCGA
Found at i:110052549 original size:27 final size:27
Alignment explanation
Indices: 110052370--110052538 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
110052360 TTTCATAATT
*
110052370 GAGGGTAAAATGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
110052396 TGAAGGTAAAATGGTAATTTTTTAAATC
1 -GAGGGTAAAATGGTAATTCTGTAAATC
***
110052424 GAGGGTAAAACAATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
110052451 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
110052478 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
110052505 GAGGGTGAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
110052532 GAGGGTA
1 GAGGGTA
110052539 CTTTGGTAAT
Statistics
Matches: 122, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
27 121 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:110052549 original size:81 final size:81
Alignment explanation
Indices: 110052370--110052538 Score: 268
Period size: 81 Copynumber: 2.1 Consensus size: 81
110052360 TTTCATAATT
* * * *
110052370 GAGGGTAAAATGGTAATTTTGTAAA-CTGAAGGTAAAATGGTAATTTTTTAAATCGAGGGTAAAA
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAA
110052434 CAATAATTCTGTAAATC
65 CAATAATTCTGTAAATC
*
110052451 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAC
*
110052516 GATAATTCTGTAAATC
66 AATAATTCTGTAAATC
110052532 GAGGGTA
1 GAGGGTA
110052539 CTTTGGTAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
81 80 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAC
AATAATTCTGTAAATC
Found at i:110052576 original size:81 final size:81
Alignment explanation
Indices: 110052410--110052583 Score: 195
Period size: 81 Copynumber: 2.1 Consensus size: 81
110052400 GGTAAAATGG
* *
110052410 TAATTTTTTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAA
** **
110052475 ATCGAGGGTAAAATGG
66 ATCGAGGACAAAATAA
* * *** *
110052491 TAATTTTGTAAATCGAGGGTGAAACGATAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAA
1 TAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAA
* ***
110052556 ATTGAGGACATTTTAA
66 ATCGAGGACAAAATAA
*
110052572 TAATTTGGTAAA
1 TAATTTTGTAAA
110052584 CTAAAGTATT
Statistics
Matches: 76, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (81 bp):
TAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAA
ATCGAGGACAAAATAA
Found at i:110054871 original size:31 final size:31
Alignment explanation
Indices: 110054836--110054897 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
110054826 TTACGGTTCG
110054836 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
1 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
110054867 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
1 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
110054898 CATCAATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.52
Consensus pattern (31 bp):
ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
Found at i:110066566 original size:27 final size:27
Alignment explanation
Indices: 110066536--110066594 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
110066526 TCTAATACTA
* *
110066536 ATTCT-ATACTGGGCTTAGGCCCACCTG
1 ATTCTGATAATGGGC-TAGGCCCAACTG
* *
110066563 ATTCTGTTAATGGGCTAGGCCCAATTG
1 ATTCTGATAATGGGCTAGGCCCAACTG
110066590 ATTCT
1 ATTCT
110066595 TATGGAGGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
ATTCTGATAATGGGCTAGGCCCAACTG
Found at i:110074378 original size:40 final size:40
Alignment explanation
Indices: 110074333--110074496 Score: 233
Period size: 40 Copynumber: 4.1 Consensus size: 40
110074323 CGGAATATAA
* * *
110074333 CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGC
*
110074373 CCGGATATAACAACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGC
*
110074413 CCGGATATAACAACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGC
* *
110074453 CCGGATATAATC-ACTAGCATAATTGCCTTCGGG-ACTTAGC
1 CCGGATATAA-CAACTAGCACAAATGCCTTCGGGTA-TTAGC
110074493 CCGG
1 CCGG
110074497 GTACCATTCA
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 113 0.98
41 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGC
Found at i:110074651 original size:64 final size:64
Alignment explanation
Indices: 110074457--110074652 Score: 140
Period size: 64 Copynumber: 3.1 Consensus size: 64
110074447 ATTAGCCCGG
110074457 ATATAATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACAC
1 ATAT-ATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACAC
* * * *** * *** * * **
110074522 ATATATCAATA--ATCA-TGACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACA
1 ATATATCACTAGCATAATTG-C-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATGCTCATGCA
*
110074578 CAA
62 CAC
*
110074581 ACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACAC
1 ATATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACAC
110074645 ATATATCA
1 ATATATCA
110074653 ATAATCATGA
Statistics
Matches: 86, Mismatches: 32, Indels: 27
0.59 0.22 0.19
Matches are distributed among these distances:
58 1 0.01
59 24 0.28
60 7 0.08
61 7 0.08
62 7 0.08
63 7 0.08
64 28 0.33
65 5 0.06
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (64 bp):
ATATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACAC
Found at i:110074681 original size:123 final size:123
Alignment explanation
Indices: 110074462--110074707 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
110074452 CCCGGATATA
110074462 ATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACACATATA
1 ATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACACATATA
*
110074527 TCAATAATCATGACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACAT
66 TCAATAATCATGACACATCCATATTTCATTTTCATTACTAAGGCTCAAACACAAACAT
110074585 ATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACACATATA
1 ATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACACATATA
110074650 TCAATAATCATGACACATCCATATTTCATTTTCATTACTAAGGCTCAAACACAAACAT
66 TCAATAATCATGACACATCCATATTTCATTTTCATTACTAAGGCTCAAACACAAACAT
110074708 TTATCAAGCT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (123 bp):
ATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGCACACATATA
TCAATAATCATGACACATCCATATTTCATTTTCATTACTAAGGCTCAAACACAAACAT
Found at i:110082439 original size:40 final size:40
Alignment explanation
Indices: 110082395--110082537 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
110082385 CACAAGGACG
*
110082395 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
1 AATGCCTTCGGGTATTAGCCCGGATATAACAACTCGCACA
*
110082435 AATGCCTTCGGGTATTAGCCCGGATATAACAACTCGGACA
1 AATGCCTTCGGGTATTAGCCCGGATATAACAACTCGCACA
* * *
110082475 AATGCCTTCGGGTATTAGCCCGGATACAATC-ACTAGCATA
1 AATGCCTTCGGGTATTAGCCCGGATATAA-CAACTCGCACA
*
110082515 ATTGCCTTCGGG-ACTTAGCCCGG
1 AATGCCTTCGGGTA-TTAGCCCGG
110082538 GTACCATTCA
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 92 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGTATTAGCCCGGATATAACAACTCGCACA
Found at i:110082521 original size:80 final size:80
Alignment explanation
Indices: 110082374--110082537 Score: 215
Period size: 80 Copynumber: 2.0 Consensus size: 80
110082364 CGAAATATAA
* * * * *
110082374 CCGGATATAACCACAAGGACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATG
1 CCGGATATAACAACAAGGACAAATGCCTTCGGGTATTAGCCCGGATACAACAACTAGCACAAATG
110082439 CCTTCGGGTA-TTAGC
66 CCTTCGGG-ACTTAGC
** * *
110082454 CCGGATATAACAACTCGGACAAATGCCTTCGGGTATTAGCCCGGATACAATC-ACTAGCATAATT
1 CCGGATATAACAACAAGGACAAATGCCTTCGGGTATTAGCCCGGATACAA-CAACTAGCACAAAT
110082518 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
110082534 CCGG
1 CCGG
110082538 GTACCATTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 71 0.97
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (80 bp):
CCGGATATAACAACAAGGACAAATGCCTTCGGGTATTAGCCCGGATACAACAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:110085130 original size:37 final size:37
Alignment explanation
Indices: 110085080--110085213 Score: 180
Period size: 37 Copynumber: 3.6 Consensus size: 37
110085070 TTATTACAAA
110085080 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
110085117 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
* * * * **
110085154 GTCTTACCTGGACATAATCTCCGCACCTAGTCGCCGG
1 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
* *
110085191 GTCTCACCC-GAAATATATTTCCA
1 GTCTTACCCGGACATA-ATTTCCA
110085214 AGTTTCATGT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
36 5 0.06
37 80 0.94
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
Found at i:110085318 original size:48 final size:48
Alignment explanation
Indices: 110085247--110086107 Score: 1364
Period size: 48 Copynumber: 17.8 Consensus size: 48
110085237 TGTTACAACA
* * * *
110085247 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * *
110085295 TTCACATTCGGCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
110085343 TTCACATTAGCCATTCGACTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
110085391 CTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
110085439 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
110085487 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
110085535 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
110085583 TTCCCATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
110085631 TTCCCATTAGCCATTCGACTTTACCACTTCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
110085679 TTCACATTAGCCATTCTGCTTTACCACTTCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
110085727 TTCACATTAGCCATTCGGCTTTACCACGTATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
110085775 TTCACATTAGCCATTCAGCTTTACGACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
110085823 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
110085871 TTC-CATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
110085918 TTCACATTAGCCATTCGGCTTTACCACCTTTACCACATATACATATCACACAGATAT
1 TTCACATTAGCCATTCGG---------CTTTACCACATATACATATCACACATATAT
*
110085975 TTCCCATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
110086023 TTCACATTAGCCATTCGGCTTTACCACTTCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
110086071 TTCACATTAGCCATTCGGCTTTACCACATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
110086108 TTATCTTGTA
Statistics
Matches: 759, Mismatches: 44, Indels: 20
0.92 0.05 0.02
Matches are distributed among these distances:
47 47 0.06
48 666 0.88
57 46 0.06
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:110089758 original size:40 final size:40
Alignment explanation
Indices: 110089709--110089980 Score: 463
Period size: 40 Copynumber: 6.8 Consensus size: 40
110089699 CCAGCATGAT
* * * *
110089709 TGCTCTTCGGGACCTAGCCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
110089749 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
110089789 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
110089829 TGCTCTTTGGGACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
110089869 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
110089909 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
110089949 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
110089981 CTCAATTCTT
Statistics
Matches: 221, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:110091209 original size:37 final size:37
Alignment explanation
Indices: 110091159--110091292 Score: 225
Period size: 37 Copynumber: 3.6 Consensus size: 37
110091149 TTATTACAAA
110091159 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
110091196 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
* *
110091233 GTTTTACCCGGACATAATTTCCGCACGTAGTCATCGG
1 GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
*
110091270 GTCTCACCCGGA-ATATATTTCCA
1 GTCTTACCCGGACATA-ATTTCCA
110091293 AGTTTCATGT
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 3 0.03
37 88 0.97
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGACATAATTTCCACACGTAGTCATCGG
Found at i:110091403 original size:48 final size:48
Alignment explanation
Indices: 110091328--110091698 Score: 598
Period size: 48 Copynumber: 7.7 Consensus size: 48
110091318 TTACAACATC
* * * *
110091328 CACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
* * * *
110091376 CACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
* *
110091424 CACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATATCT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
* *
110091472 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
110091520 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
110091568 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
* * *
110091616 CCCATTAGCCATTCGGCTTTACCACTTCTACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
*
110091664 CACATTAGCCATTCGGCTTTACCACATATATATAT
1 CACATTAGCCATTCGGCTTTACCACATATACATAT
110091699 TTATCTTGTA
Statistics
Matches: 300, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 300 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
Found at i:110098465 original size:39 final size:39
Alignment explanation
Indices: 110098381--110098533 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
110098371 TATGGTAACC
** * *
110098381 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
110098421 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
110098460 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
110098499 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
110098534 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:110098506 original size:78 final size:79
Alignment explanation
Indices: 110098350--110098532 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
110098340 TCGTTCAAAC
* * **
110098350 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
110098415 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
110098430 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
110098494 CAATTTGCACAATT
66 CAATTTGCACAATT
110098508 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
110098533 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:110110308 original size:37 final size:37
Alignment explanation
Indices: 110110248--110110379 Score: 212
Period size: 37 Copynumber: 3.6 Consensus size: 37
110110238 TTATTACGAA
* *
110110248 GTCTTACCCAGACATA-ATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGA-ATATATTTCCACACGTAGTCATCGG
*
110110285 GTCTTACCCGGAATATATTTCCACACGTAGCCATCGG
1 GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
110110322 GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
*
110110359 GTCTCACCCGGAATATATTTC
1 GTCTTACCCGGAATATATTTC
110110380 TAAGTTTCAT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 3 0.03
37 86 0.97
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
Found at i:110110489 original size:48 final size:48
Alignment explanation
Indices: 110110414--110111031 Score: 1060
Period size: 48 Copynumber: 12.9 Consensus size: 48
110110404 ATGTTACAAC
* * * *
110110414 ATTT-ACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
* *
110110461 ATTTCACATTCGCCATTCGGCTTTACCACCTATACATATCACACATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
110110509 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
* *
110110557 ATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATGT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
* *
110110605 ATTTCACATTAGCCATTCGGGCTTTACCACATATACATATCACTCATGT
1 ATTTCACATTAGCCATTC-GGCTTTACCACATATACATATCACACATAT
110110654 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
*
110110702 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
* *
110110750 ATTTCACATTAGCCATTCGGGTTTTACCACATATACATATCACACATGT
1 ATTTCACATTAGCCATTC-GGCTTTACCACATATACATATCACACATAT
110110799 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
* *
110110847 ATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCACACATGT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
*
110110895 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
110110943 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
110110991 ATTTCACATTAGCCATTCGGCTTTACCACATATAC-TATCAC
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCAC
110111032 GTACAGACTT
Statistics
Matches: 546, Mismatches: 22, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 10 0.02
48 442 0.81
49 94 0.17
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
Found at i:110110682 original size:145 final size:144
Alignment explanation
Indices: 110110414--110111031 Score: 1096
Period size: 145 Copynumber: 4.3 Consensus size: 144
110110404 ATGTTACAAC
* * * ** *
110110414 ATTT-ACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTTCACATTCGCCATT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
* *
110110478 CGGCTTTACCACCTATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATA
66 CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATA
110110543 CATATCACACATAT
131 CATATCACACATAT
*
110110557 ATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
*
110110622 CGGGCTTTACCACATATACATATCACTCATGTATTTCACATTAGCCATTCGGCTTTACCACATAT
66 C-GGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATAT
110110687 ACATATCACACATAT
130 ACATATCACACATAT
110110702 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
*
110110767 CGGGTTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATAT
66 C-GGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATAT
110110832 ACATATCACACATAT
130 ACATATCACACATAT
*
110110847 ATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCACACATGTATTTCACATTAGCCATT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
110110912 CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATA
66 CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATA
110110977 CATATCACACATAT
131 CATATCACACATAT
110110991 ATTTCACATTAGCCATTCGGCTTTACCACATATAC-TATCAC
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCAC
110111032 GTACAGACTT
Statistics
Matches: 458, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
143 10 0.02
144 166 0.36
145 282 0.62
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (144 bp):
ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATA
CATATCACACATAT
Found at i:110114224 original size:25 final size:25
Alignment explanation
Indices: 110114187--110114238 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
110114177 AAAGGATTTA
110114187 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
110114212 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
110114237 CA
1 CA
110114239 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:110114476 original size:40 final size:40
Alignment explanation
Indices: 110114432--110114525 Score: 179
Period size: 40 Copynumber: 2.4 Consensus size: 40
110114422 GGGGCCTAGC
110114432 CCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAGT
*
110114472 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAGT
110114512 CCGGATACATCACT
1 CCGGATACATCACT
110114526 CTCAATTCTC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (40 bp):
CCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAGT
Found at i:110116463 original size:37 final size:37
Alignment explanation
Indices: 110116403--110116571 Score: 259
Period size: 37 Copynumber: 4.6 Consensus size: 37
110116393 TTATTACAAA
*
110116403 GTCTTACCCGGACATA-ATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGA-ATATATTTCCACACGTAGTCATCGG
* *
110116440 GTTTTACCTGGAATATATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
* *
110116477 GTCTTACCCGGAATATATTTCCACATGTAGCCATCGG
1 GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
110116514 GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
* *
110116551 GTCTCACCTGGAATATATTTC
1 GTCTTACCCGGAATATATTTC
110116572 TAAGTTTCAT
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
36 3 0.03
37 117 0.98
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (37 bp):
GTCTTACCCGGAATATATTTCCACACGTAGTCATCGG
Found at i:110116678 original size:48 final size:48
Alignment explanation
Indices: 110116607--110116933 Score: 548
Period size: 48 Copynumber: 6.8 Consensus size: 48
110116597 CGTTACAACA
* * * **
110116607 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
110116655 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
* *
110116703 TTCACATTGGCCATTCGCCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
110116751 TTCACATTAACCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
110116799 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
110116847 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
110116895 TTCACATTAGCCATTCGGCTTTACCACATACAC-TATCAC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCAC
110116934 GTACAGACTT
Statistics
Matches: 265, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
47 6 0.02
48 259 0.98
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:110121879 original size:60 final size:60
Alignment explanation
Indices: 110121808--110121933 Score: 225
Period size: 60 Copynumber: 2.1 Consensus size: 60
110121798 GTTCCTTTAG
110121808 TAAAAGTGTTATGGCTAAAACACGGGATGAAAGAAGCTACTTCGGAACCCGAGAACTCTA
1 TAAAAGTGTTATGGCTAAAACACGGGATGAAAGAAGCTACTTCGGAACCCGAGAACTCTA
* *
110121868 TAAAAGTGTTATGGCTGAAACACGGGATGGAAGAAGCTACTTCGGAACCCGAGAACTCTA
1 TAAAAGTGTTATGGCTAAAACACGGGATGAAAGAAGCTACTTCGGAACCCGAGAACTCTA
*
110121928 TGAAAG
1 TAAAAG
110121934 AACGATACCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (60 bp):
TAAAAGTGTTATGGCTAAAACACGGGATGAAAGAAGCTACTTCGGAACCCGAGAACTCTA
Found at i:110123740 original size:40 final size:40
Alignment explanation
Indices: 110123684--110123901 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
110123674 CAGATGATAA
* *
110123684 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
110123724 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
110123764 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
110123804 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
110123844 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
110123884 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
110123902 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.09
40 146 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:110126171 original size:32 final size:32
Alignment explanation
Indices: 110126130--110126194 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
110126120 CTTGTGTGAG
110126130 ATTCATGAACTCACGCCTACGAGCATCCACAT
1 ATTCATGAACTCACGCCTACGAGCATCCACAT
*
110126162 ATTCATGAACTCACGCCTACGAGCATCTACAT
1 ATTCATGAACTCACGCCTACGAGCATCCACAT
110126194 A
1 A
110126195 ACTAACTTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.23
Consensus pattern (32 bp):
ATTCATGAACTCACGCCTACGAGCATCCACAT
Found at i:110126675 original size:15 final size:15
Alignment explanation
Indices: 110126655--110126696 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
110126645 CTATGGACTC
110126655 TACCACGGCCACGAG
1 TACCACGGCCACGAG
110126670 TACCACGGCCACGAG
1 TACCACGGCCACGAG
*
110126685 TACCACGTCCAC
1 TACCACGGCCAC
110126697 ATGTTCCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.26, C:0.43, G:0.21, T:0.10
Consensus pattern (15 bp):
TACCACGGCCACGAG
Found at i:110131363 original size:48 final size:48
Alignment explanation
Indices: 110131125--110131357 Score: 304
Period size: 48 Copynumber: 4.9 Consensus size: 48
110131115 ATGACATTAG
*
110131125 GAGTTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGAGTGC
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGAGTGC
** * *
110131173 GAGTTACATTGATTTGGCTTTAGGCCATGATATTAGCACTTCGAGTGT
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGAGTGC
** *
110131221 GAGTTATTTTGATTTGGCTTCGGGCCATGATGTTGGCACTTCGAGTGC
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGAGTGC
* * * * * *
110131269 GAGTTATATTAATTTGGCTTCGGGCCGTGATTTTGGTACTTCGGGTGC
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGAGTGC
** * *
110131317 GAAATACATTGAGTTGGCTTCGGGCCATGATATTGGAACTT
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTGGCACTT
110131358 AGGGTGAAAG
Statistics
Matches: 161, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 161 1.00
ACGTcount: A:0.20, C:0.16, G:0.28, T:0.36
Consensus pattern (48 bp):
GAGTTACATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGAGTGC
Found at i:110136637 original size:40 final size:40
Alignment explanation
Indices: 110136588--110136737 Score: 180
Period size: 39 Copynumber: 3.8 Consensus size: 40
110136578 GCTACTCGTT
* * * * *
110136588 CAAACGCCTTCGGGACATAGCCCGGTTAT-AGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCA-CAACTCGCA
*
110136628 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCGCA
*
110136668 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCGCA
* * *
110136707 CAATTGCCTTCAGG-CTTAGCCTGGATATCAC
1 CAAATGCCTTCGGGACTTAGCCCGGATATCAC
110136738 CCGAACATTC
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 53 0.54
40 45 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCGCA
Found at i:110136702 original size:39 final size:39
Alignment explanation
Indices: 110136622--110136737 Score: 187
Period size: 39 Copynumber: 2.9 Consensus size: 39
110136612 GTTATAGTAG
* *
110136622 CTCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
110136662 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
* *
110136701 CTCGCACAATTGCCTTCAGGCTTAGCCTGGATATCAC
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
110136738 CCGAACATTC
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 53 0.74
40 19 0.26
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:110144286 original size:40 final size:40
Alignment explanation
Indices: 110144212--110144357 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
110144202 CCGCACCAAG
* * * * * *
110144212 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
110144252 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
110144292 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
110144332 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
110144358 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:110144372 original size:40 final size:40
Alignment explanation
Indices: 110144244--110144395 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
110144234 ATCACGATTT
* * * **
110144244 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
110144284 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
110144324 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
110144364 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
110144396 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:110153366 original size:40 final size:40
Alignment explanation
Indices: 110153292--110153437 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
110153282 CCGCACCAAG
* * * * * *
110153292 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
110153332 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
110153372 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
110153412 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
110153438 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:110153452 original size:40 final size:40
Alignment explanation
Indices: 110153324--110153475 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
110153314 ATCACGATTT
* * * * *
110153324 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
110153364 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
110153404 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
110153444 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
110153476 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:110161455 original size:39 final size:39
Alignment explanation
Indices: 110161366--110161513 Score: 146
Period size: 39 Copynumber: 3.8 Consensus size: 39
110161356 GAATCGATTT
* * *
110161366 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACT-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-TATGCCTA
110161405 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA-GCCCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATATG-CCTA
* *
110161444 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAATTTCC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-A-TGCCTA
* *
110161483 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
110161514 CATTCAATTT
Statistics
Matches: 94, Mismatches: 7, Indels: 16
0.80 0.06 0.14
Matches are distributed among these distances:
37 1 0.01
38 17 0.18
39 72 0.77
40 4 0.04
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATGCCTA
Found at i:110171054 original size:40 final size:40
Alignment explanation
Indices: 110170999--110171248 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
110170989 AACATTGGAA
110170999 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110171039 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110171079 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110171119 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
110171159 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
110171198 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
110171239 CTATATCCGG
1 ATATATCCGG
110171249 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:110175337 original size:28 final size:28
Alignment explanation
Indices: 110175272--110175343 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
110175262 ATAGTGAATC
* *
110175272 CGCACACTTAGTGCTATATGTATTCAACT
1 CGCACACTTAGTGCTACA-GTAATCAACT
110175301 CGCACACTTAGTGCTACA-TAATCAAACT
1 CGCACACTTAGTGCTACAGTAATC-AACT
110175329 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
110175344 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.10
28 19 0.47
29 17 0.43
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTACAGTAATCAACT
Found at i:110179319 original size:39 final size:39
Alignment explanation
Indices: 110179239--110179432 Score: 334
Period size: 39 Copynumber: 4.9 Consensus size: 39
110179229 GTTATAGTAG
* *
110179239 CTCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
110179279 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
*
110179318 CTCACACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
*
110179357 CTCGGACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
*
110179396 CTCGCACAATTGTCTTCGGGCTTAGCCCGGATATCAC
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
110179433 CCGAACATTC
Statistics
Matches: 147, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 128 0.87
40 19 0.13
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:110184702 original size:33 final size:34
Alignment explanation
Indices: 110184665--110184748 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
110184655 CCCATTTCAG
*
110184665 TTACAAT-CCAGTATCAGTGTGGG-TCTCAGCCCA
1 TTACAATAACAGTATCAGTGTGGGCT-TCAGCCCA
* *
110184698 TTACAATAATAGTATCAGTGTGGGCTTTAGCCCA
1 TTACAATAACAGTATCAGTGTGGGCTTCAGCCCA
*
110184732 TTACAATAATAGTATCA
1 TTACAATAACAGTATCA
110184749 AAAAATGCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.15
34 38 0.83
35 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (34 bp):
TTACAATAACAGTATCAGTGTGGGCTTCAGCCCA
Found at i:110184714 original size:34 final size:34
Alignment explanation
Indices: 110184674--110184748 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
110184664 GTTACAATCC
110184674 AGTATCAGTGTGGG-TCTCAGCCCATTACAATAAT
1 AGTATCAGTGTGGGCT-TCAGCCCATTACAATAAT
*
110184708 AGTATCAGTGTGGGCTTTAGCCCATTACAATAAT
1 AGTATCAGTGTGGGCTTCAGCCCATTACAATAAT
110184742 AGTATCA
1 AGTATCA
110184749 AAAAATGCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 38 0.97
35 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (34 bp):
AGTATCAGTGTGGGCTTCAGCCCATTACAATAAT
Found at i:110193870 original size:68 final size:70
Alignment explanation
Indices: 110193798--110193995 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
110193788 ACACCCTGTA
* * * *
110193798 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
110193860 ATAAAT
65 ATAAAT
*
110193866 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
110193931 ATAAAT
65 ATAAAT
* *
110193937 GTAGCTAGGTTGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
110193996 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:110193921 original size:71 final size:71
Alignment explanation
Indices: 110193832--110193995 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
110193822 GAGATGTATC
110193832 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
110193897 AGGACA
66 AGGACA
*
110193903 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTTGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
110193968 AGGACA
66 AGGACA
110193974 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
110193996 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:110198051 original size:23 final size:23
Alignment explanation
Indices: 110198025--110198072 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
110198015 AGATGAGAAT
110198025 GTGTATGAGATTAGTACGAGATG
1 GTGTATGAGATTAGTACGAGATG
110198048 GTGTATGAGATTAGTACGAGATG
1 GTGTATGAGATTAGTACGAGATG
110198071 GT
1 GT
110198073 ATAGTAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.35, T:0.31
Consensus pattern (23 bp):
GTGTATGAGATTAGTACGAGATG
Found at i:110200405 original size:27 final size:27
Alignment explanation
Indices: 110200367--110200423 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
110200357 TTTTCACATC
110200367 CATACAAACCACCCCAAATTGACTAAT
1 CATACAAACCACCCCAAATTGACTAAT
110200394 CATACAAACCACCCCAAATTGACTAAT
1 CATACAAACCACCCCAAATTGACTAAT
110200421 CAT
1 CAT
110200424 TCATTTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.33, G:0.04, T:0.19
Consensus pattern (27 bp):
CATACAAACCACCCCAAATTGACTAAT
Found at i:110203303 original size:43 final size:42
Alignment explanation
Indices: 110203179--110203329 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 42
110203169 ATATGTGTTA
* *
110203179 TCGTGTAAGACCATGTCTGGGACT-TTGGCGTCG-ACTTATGATT
1 TCGTGTAAGACCATGTCTGGGA-TACTGGCATCGTA-TT-TGATT
* * *
110203222 TACGTGTAAGACTATGTCTGGGACACTGGCATCATATTTGATT
1 T-CGTGTAAGACCATGTCTGGGATACTGGCATCGTATTTGATT
* *
110203265 TCGTGTAAGACCCTGTCTGGGATAGTGGCATCGGTATTTGATT
1 TCGTGTAAGACCATGTCTGGGATACTGGCATC-GTATTTGATT
* *
110203308 ACATGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
110203330 CATTTGCATT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
42 27 0.30
43 35 0.38
44 28 0.31
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGATACTGGCATCGTATTTGATT
Found at i:110209333 original size:40 final size:40
Alignment explanation
Indices: 110209041--110209326 Score: 466
Period size: 40 Copynumber: 7.2 Consensus size: 40
110209031 AACCCAAGTA
* ** *
110209041 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
110209080 CCTTCGGGACTTAGCCCGGATACAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
110209120 CCTTCGGGACTTAGCTCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
110209160 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
110209200 CATTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
110209240 CCTTCGGGACTTAGGCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
110209280 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
110209320 CCTTCGG
1 CCTTCGG
110209327 ATCTTAGTCC
Statistics
Matches: 229, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 13 0.06
40 216 0.94
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:110210723 original size:13 final size:13
Alignment explanation
Indices: 110210705--110210730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
110210695 ATTTTTATTT
110210705 TTAACATAAAATA
1 TTAACATAAAATA
110210718 TTAACATAAAATA
1 TTAACATAAAATA
110210731 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:110211165 original size:26 final size:27
Alignment explanation
Indices: 110211136--110211259 Score: 103
Period size: 27 Copynumber: 4.6 Consensus size: 27
110211126 TTAGTTTACC
*
110211136 AAATTACTGAAATACCCCCAG-TTGCA
1 AAATTACTCAAATACCCCCAGTTTGCA
* **
110211162 AAA-TAATCAAAGTACCCCCAGTTTATA
1 AAATTACTCAAA-TACCCCCAGTTTGCA
* * * *
110211189 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACTCAAATACCCCCAG-TTTGCA
*
110211216 AAATTAC-CGAAATACCCTCAGTTTGCA
1 AAATTACTC-AAATACCCCCAGTTTGCA
*
110211243 AAATTACTAAAATACCC
1 AAATTACTCAAATACCC
110211260 TCGACATGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
25 6 0.08
26 14 0.18
27 52 0.66
28 7 0.09
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTACTCAAATACCCCCAGTTTGCA
Found at i:110211217 original size:27 final size:27
Alignment explanation
Indices: 110211187--110211290 Score: 102
Period size: 27 Copynumber: 3.9 Consensus size: 27
110211177 CCCCAGTTTA
* *
110211187 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCAAAATACCCTCGATTTG
*
110211214 TAAAATTACCGAAATACCCTC-AGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTG
* * **
110211241 CAAAATTACTAAAATACCCTCGACATG
1 TAAAATTACCAAAATACCCTCGATTTG
* * *
110211268 TAAAATTATCAAAGTACCATCGA
1 TAAAATTACCAAAATACCCTCGA
110211291 ATTACAAAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.02
27 61 0.97
28 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTG
Found at i:110211312 original size:27 final size:27
Alignment explanation
Indices: 110211282--110211692 Score: 545
Period size: 27 Copynumber: 15.2 Consensus size: 27
110211272 ATTATCAAAG
* * * *
110211282 TACCATCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
110211309 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
110211336 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
110211363 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
110211390 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
110211417 TACACTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
110211444 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
110211471 TACACTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
110211498 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
110211525 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
110211552 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
110211579 TACCATCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
110211606 TAACCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
110211633 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
110211660 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
110211687 TACCCT
1 TACCCT
110211693 TAGGGTGTTA
Statistics
Matches: 344, Mismatches: 38, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 342 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:110212240 original size:6 final size:6
Alignment explanation
Indices: 110212203--110212324 Score: 61
Period size: 6 Copynumber: 19.8 Consensus size: 6
110212193 TTGCATTCAC
* * * *
110212203 ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
110212252 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTA ATTATG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
110212302 ATTTTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
110212325 AGTTTTGATA
Statistics
Matches: 84, Mismatches: 23, Indels: 18
0.67 0.18 0.14
Matches are distributed among these distances:
5 4 0.05
6 70 0.83
7 7 0.08
8 3 0.04
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:110212250 original size:31 final size:31
Alignment explanation
Indices: 110212215--110212281 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
110212205 TCTAATTTTG
* *
110212215 ATTCTGTTACCTGATACTGATTCTGATTCTA
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
* *
110212246 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
110212277 ATTCT
1 ATTCT
110212282 AATTATGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (31 bp):
ATTCTGTCACCTAATACTGATTCTGATTCTA
Found at i:110212266 original size:37 final size:37
Alignment explanation
Indices: 110212225--110212312 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
110212215 ATTCTGTTAC
* *
110212225 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTATGTCACCTAATT
*
110212262 CTGATTCTGATTCTGATTCTAATTATGTCACCTGATT
1 CTGATTCTGATTCTGATTCTAATTATGTCACCTAATT
*
110212299 CTGATTTTGATTCT
1 CTGATTCTGATTCT
110212313 CATTTTGATT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTATGTCACCTAATT
Found at i:110212311 original size:12 final size:11
Alignment explanation
Indices: 110212294--110212333 Score: 53
Period size: 12 Copynumber: 3.4 Consensus size: 11
110212284 TTATGTCACC
110212294 TGATTCTGATTT
1 TGATTCT-ATTT
110212306 TGATTCTCATTT
1 TGATTCT-ATTT
110212318 TGATTCTAGTTT
1 TGATTCTA-TTT
110212330 TGAT
1 TGAT
110212334 AATGTTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 1 0.04
12 25 0.96
ACGTcount: A:0.17, C:0.10, G:0.15, T:0.57
Consensus pattern (11 bp):
TGATTCTATTT
Found at i:110216814 original size:29 final size:29
Alignment explanation
Indices: 110216772--110216837 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
110216762 AGAAAAATGA
*
110216772 GACATCTGAGAAAGTATCGACAAAGTTCT
1 GACATCCGAGAAAGTATCGACAAAGTTCT
110216801 GACATCCGAGAAAGTATCGACAAAGTTCT
1 GACATCCGAGAAAGTATCGACAAAGTTCT
*
110216830 AACATCCG
1 GACATCCG
110216838 TAAAGCCCCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (29 bp):
GACATCCGAGAAAGTATCGACAAAGTTCT
Found at i:110217065 original size:43 final size:43
Alignment explanation
Indices: 110216931--110217066 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
110216921 ATCTGACACA
* * * *
110216931 TTGGCATCGACT-TATGATTTACATGTAAGACAATGT-TTACGACG
1 TTGGCATCGA-TATTTGA-TTACATGTAAGACCACGTCTT-GGACG
* * * * *
110216975 TTGACATCG-TATTTGATTTCGTGTACGACC-CTGTCTGGGACAG
1 TTGGCATCGATATTTGATTACATGTAAGACCAC-GTCTTGGAC-G
110217018 -TGGCATCGATATTTGATTACATGTAAGACCACGTCTTGGACG
1 TTGGCATCGATATTTGATTACATGTAAGACCACGTCTTGGACG
110217060 TTGGCAT
1 TTGGCAT
110217067 TGTACAAGCT
Statistics
Matches: 71, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
42 24 0.34
43 38 0.54
44 9 0.13
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
TTGGCATCGATATTTGATTACATGTAAGACCACGTCTTGGACG
Found at i:110222595 original size:43 final size:44
Alignment explanation
Indices: 110222407--110222587 Score: 244
Period size: 43 Copynumber: 4.2 Consensus size: 44
110222397 TGATTATGTA
* * *
110222407 TAAGACTATGCCTGGGACATTGGCATC-ATATTGCGATTACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATTGTGATTACATG
*
110222450 TAAGACCATGTCTGGGACATTGGCATCG-TATTGTGATTACGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATATTGTGATTACATG
* * * * *
110222493 TAAGACAATGTCTGGGACATTGGCATCGTTA-TATGATTTCGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATATTGTGATTACATG
*
110222536 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATTGTGATTACATG
110222579 TAAGACCAT
1 TAAGACCAT
110222588 ATTTGGGATA
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 121 0.98
44 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATTGTGATTACATG
Found at i:110231208 original size:15 final size:16
Alignment explanation
Indices: 110231188--110231217 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
110231178 TCAAACCCAA
110231188 ATCATATA-TCATCAT
1 ATCATATATTCATCAT
110231203 ATCATATATTCATCA
1 ATCATATATTCATCA
110231218 ACCTATTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (16 bp):
ATCATATATTCATCAT
Found at i:110233234 original size:39 final size:40
Alignment explanation
Indices: 110233134--110233433 Score: 382
Period size: 39 Copynumber: 7.6 Consensus size: 40
110233124 TCGAATGATG
* *
110233134 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTAACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
110233173 ATCCGGACAAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
110233214 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
110233253 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
110233292 TACGGGCTAAG-CCCGAAGGCATTTTTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
110233331 CCCGGGCTAAG-CCCGATGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
110233370 TCAGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
110233409 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATT
110233434 GGAACGAGTA
Statistics
Matches: 230, Mismatches: 24, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
39 145 0.63
40 75 0.33
41 10 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:110235471 original size:44 final size:43
Alignment explanation
Indices: 110235370--110235487 Score: 114
Period size: 44 Copynumber: 2.7 Consensus size: 43
110235360 AAAGCTCGTA
** * **
110235370 CAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAACATCCCAGACATGGTCTTACACATAATCAAATAT
* *
110235413 TAATGCC-ACTATCCCAGACATGGTCTTACACATAAATCATAA-GT
1 CAATGCCAAC-ATCCCAGACATGGTCTTACACAT-AATCA-AATAT
* *
110235457 CAATGCCAACATCCCATACATGATCTTACAC
1 CAATGCCAACATCCCAGACATGGTCTTACAC
110235488 GAAAACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 1 0.02
43 25 0.41
44 31 0.51
45 4 0.07
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (43 bp):
CAATGCCAACATCCCAGACATGGTCTTACACATAATCAAATAT
Found at i:110244667 original size:40 final size:40
Alignment explanation
Indices: 110244623--110244806 Score: 271
Period size: 40 Copynumber: 4.6 Consensus size: 40
110244613 CACACGCATG
110244623 AAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 AAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
*
110244663 AAATGCCTTCGGGTATTAGCCCGGATATAACAACTCGCAC
1 AAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
* *
110244703 GAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAA
1 AAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
* * * *
110244743 AAATGCCTTCGGGTCCTAGCCCGGATATAATC-GCTAGCAT
1 AAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCAC
* *
110244783 AATTGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGTCTTAGCCCGG
110244807 GTACCATTCA
Statistics
Matches: 131, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 130 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
AAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
Found at i:110244995 original size:123 final size:123
Alignment explanation
Indices: 110244776--110245021 Score: 465
Period size: 123 Copynumber: 2.0 Consensus size: 123
110244766 GATATAATCG
* *
110244776 CTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATGCTCATGTACACATATATCAG
1 CTAGCATAATTGCCTTCAGGACTTAGCCCGGGTACCATTCAAATGCTCATGTACACATATATCAA
110244841 TAATCATGACACATCCATAATTCATTTTCGTTACTAAGGCTCAAACACAAACATATCA
66 TAATCATGACACATCCATAATTCATTTTCGTTACTAAGGCTCAAACACAAACATATCA
110244899 CTAGCATAATTGCCTTCAGGACTTAGCCCGGGTACCATTCAAATGCTCATGTACACATATATCAA
1 CTAGCATAATTGCCTTCAGGACTTAGCCCGGGTACCATTCAAATGCTCATGTACACATATATCAA
*
110244964 TAATCATGACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCA
66 TAATCATGACACATCCATAATTCATTTTCGTTACTAAGGCTCAAACACAAACATATCA
110245022 AACCTTTCCA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (123 bp):
CTAGCATAATTGCCTTCAGGACTTAGCCCGGGTACCATTCAAATGCTCATGTACACATATATCAA
TAATCATGACACATCCATAATTCATTTTCGTTACTAAGGCTCAAACACAAACATATCA
Found at i:110255446 original size:93 final size:93
Alignment explanation
Indices: 110255334--110255504 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
110255324 GCCCATAAGT
* *
110255334 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
110255399 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
110255427 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
110255492 CGAGTTCGGATGC
66 CGAGTTCGGATGC
110255505 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:110255501 original size:46 final size:46
Alignment explanation
Indices: 110255326--110255506 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
110255316 TGTAACCCGC
* * *
110255326 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
110255372 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
110255422 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
110255465 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
110255507 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:110258510 original size:26 final size:27
Alignment explanation
Indices: 110258481--110258531 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
110258471 CTTGACTATG
* *
110258481 AAATAGGTTTTTGAAAA-TTTTTCTCA
1 AAATAGGGTTTTCAAAAGTTTTTCTCA
*
110258507 AAATTGGGTTTTCAAAAGTTTTTCT
1 AAATAGGGTTTTCAAAAGTTTTTCT
110258532 AAACCTTAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (27 bp):
AAATAGGGTTTTCAAAAGTTTTTCTCA
Found at i:110261516 original size:2 final size:2
Alignment explanation
Indices: 110261446--110261499 Score: 54
Period size: 2 Copynumber: 25.5 Consensus size: 2
110261436 AAATCGATTG
* * *
110261446 AT AT AT AT CT AT AT AT AT AT AT TT AT AT CAT AT CCT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT -AT AT -AT AT
110261489 AT AT AT AT AT A
1 AT AT AT AT AT A
110261500 AAGGGTGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
2 38 0.88
3 5 0.12
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:110262801 original size:27 final size:26
Alignment explanation
Indices: 110262745--110262801 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
110262735 CAACCTTAAC
* * *
110262745 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
110262771 CCTAGGGGTAAATCTA-TAAATTTTCCA
1 CCTAGGGGTAAATC-AGT-AATTTTCCA
110262798 CCTA
1 CCTA
110262802 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:110273101 original size:146 final size:147
Alignment explanation
Indices: 110272828--110273160 Score: 514
Period size: 146 Copynumber: 2.3 Consensus size: 147
110272818 ATAATAGGGT
* * *
110272828 TATGTGAGACAGTGTAAGACCATGTTTGGAACATGGCAT-TAGCATTTATATGAGAGCTAGTGTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAGCATTTATATGAGAGCTAGTGTA
110272892 AGACCATGTCTGGGACATGGCATCGACCTCGACATGTGGGCTAGTGTCAAACCATGTTTGGAACA
66 AGACCATGTCTGGGACATGGCATCGACCTCGACATGTGGGCTAGTGTCAAACCATGTTTGGAACA
110272957 TGGCATC-GATACAGATA
131 TGGCATCGGA-ACAGATA
*
110272974 TATGAGAGCCAGTGTAAAACCATGTTTGGAACATGGCATCGA-CATTTATATGAGAGCTAGTGTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAGCATTTATATGAGAGCTAGTGTA
110273038 AGACCATGTCTGGGACATGGCATC-AGCCTCGACATGTGGGCTAGTGT-AAGACCATGTTTGGAA
66 AGACCATGTCTGGGACATGGCATCGA-CCTCGACATGTGGGCTAGTGTCAA-ACCATGTTTGGAA
*
110273101 CATGGCATCGGAACCGATA
129 CATGGCATCGGAACAGATA
* * * * *
110273120 TATGAGAACCGGTATAAGACCATGTCTGGGACATGGCATCG
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
110273161 GTATCTTACC
Statistics
Matches: 172, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
145 3 0.02
146 166 0.97
147 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (147 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAGCATTTATATGAGAGCTAGTGTA
AGACCATGTCTGGGACATGGCATCGACCTCGACATGTGGGCTAGTGTCAAACCATGTTTGGAACA
TGGCATCGGAACAGATA
Found at i:110273109 original size:48 final size:47
Alignment explanation
Indices: 110272838--110273110 Score: 271
Period size: 48 Copynumber: 5.7 Consensus size: 47
110272828 TATGTGAGAC
* ** * *
110272838 AGTGTAAGACCATGTTTGGAACATGGCATTAGCATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCA-TCGCATCGATATGTGGGCT
* * * *
110272886 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGTGGGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCG-CATCGATATGTGGGCT
* *
110272934 AGTGTCAA-ACCATGTTTGGAACATGGCATCG-ATACAGATATATGAGAGCC
1 AGTGT-AAGACCATGTTTGGAACATGGCATCGCAT-C-GATATGTG-G-GCT
* ** * *
110272984 AGTGTAAAACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCG-CATCGATATGTGGGCT
* * * *
110273032 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGGGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATC-GCATCGATATGTGGGCT
110273080 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTTTGGAACATGGCATCG
110273111 GAACCGATAT
Statistics
Matches: 183, Mismatches: 32, Indels: 21
0.78 0.14 0.09
Matches are distributed among these distances:
46 1 0.01
47 4 0.02
48 135 0.74
49 6 0.03
50 35 0.19
52 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGCATCGATATGTGGGCT
Found at i:110273122 original size:98 final size:97
Alignment explanation
Indices: 110272838--110273159 Score: 305
Period size: 98 Copynumber: 3.3 Consensus size: 97
110272828 TATGTGAGAC
* * ** * * *
110272838 AGTGTAAGACCATGTTTGGAACATGGCATTAGCATTTATATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCAGCATCGATATGTGGGCTAGTGTAAGACCATGTTT
* * * *
110272903 GGGACATGGCATCGACCTCGACATGTG-G-GCT
66 GGAACATGGCATCGAAC-CGATATATGAGAGCT
* * * *
110272934 AGTGTCAA-ACCATGTTTGGAACATGGCATC-G-ATACAGATATATGAGAGCCAGTGTAAAACCA
1 AGTGT-AAGACCATGTCTGGAACATGGCATCAGCAT-C-GATATGTG-G-GCTAGTGTAAGACCA
***
110272996 TGTTTGGAACATGGCATCG-ACATTTATATGAGAGCT
61 TGTTTGGAACATGGCATCGAACCGATATATGAGAGCT
* * *
110273032 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGGGCTAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCAGCATCGATATGTGGGCTAGTGTAAGACCATGTTT
* *
110273097 GGAACATGGCATCGGAACCGATATATGAGAACC
66 GGAACATGGCATC-GAACCGATATATGAGAGCT
* * *
110273130 GGTATAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGAACATGGCATC
110273160 GGTATCTTAC
Statistics
Matches: 184, Mismatches: 30, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
94 2 0.01
95 1 0.01
96 66 0.36
97 8 0.04
98 104 0.57
99 2 0.01
100 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCAGCATCGATATGTGGGCTAGTGTAAGACCATGTTT
GGAACATGGCATCGAACCGATATATGAGAGCT
Found at i:110275411 original size:38 final size:38
Alignment explanation
Indices: 110275360--110275440 Score: 144
Period size: 38 Copynumber: 2.1 Consensus size: 38
110275350 CATATACAGC
*
110275360 CATACTTCAACATCACAATACTAATATACCACCAATCA
1 CATACGTCAACATCACAATACTAATATACCACCAATCA
*
110275398 CATACGTCAACATCACAATACTCATATACCACCAATCA
1 CATACGTCAACATCACAATACTAATATACCACCAATCA
110275436 CATAC
1 CATAC
110275441 TTCATCTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.43, C:0.33, G:0.01, T:0.22
Consensus pattern (38 bp):
CATACGTCAACATCACAATACTAATATACCACCAATCA
Found at i:110276469 original size:18 final size:18
Alignment explanation
Indices: 110276419--110276471 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
110276409 ATGTTACACT
* *
110276419 ATGTTATTATGCGAACCC
1 ATGTTATTATGTGAACCA
*
110276437 ATGTTATTATATGAACCA
1 ATGTTATTATGTGAACCA
*
110276455 ATGTTATTGTGTGAACC
1 ATGTTATTATGTGAACC
110276472 TTAATATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (18 bp):
ATGTTATTATGTGAACCA
Found at i:110283806 original size:16 final size:15
Alignment explanation
Indices: 110283773--110283801 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
110283763 ATTTTCTGTG
110283773 TTTATTGTGTGTGAA
1 TTTATTGTGTGTGAA
110283788 TTTA-TGTGTGTGAA
1 TTTATTGTGTGTGAA
110283802 AATTTCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (15 bp):
TTTATTGTGTGTGAA
Found at i:110284433 original size:13 final size:13
Alignment explanation
Indices: 110284415--110284439 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110284405 GAGTTGGCAT
110284415 TGATATGTGATTC
1 TGATATGTGATTC
110284428 TGATATGTGATT
1 TGATATGTGATT
110284440 ACGTGTAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (13 bp):
TGATATGTGATTC
Found at i:110284490 original size:43 final size:43
Alignment explanation
Indices: 110284429--110284685 Score: 374
Period size: 43 Copynumber: 6.0 Consensus size: 43
110284419 ATGTGATTCT
*
110284429 GATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
*
110284472 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* * *
110284515 GATATGTGATTATGTGTAAGACCATGTCTGGGACGTTGGCATT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* *
110284558 GATATGTGATTACGTGTAAGACCACATCTGGGACATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
*
110284601 GATATGTGATTACGTGTAAGACC-CTGTCTGGGACAG-TGGTATC
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC
* ** *
110284644 GATATGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
110284686 TGTATGATAT
Statistics
Matches: 193, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 192 0.99
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:110308229 original size:15 final size:16
Alignment explanation
Indices: 110308209--110308241 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
110308199 TACTTTATAG
110308209 ATTTTA-ATAATTATT
1 ATTTTACATAATTATT
*
110308224 ATTTTACATATTTATT
1 ATTTTACATAATTATT
110308240 AT
1 AT
110308242 ACATATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTTACATAATTATT
Found at i:110311834 original size:6 final size:6
Alignment explanation
Indices: 110311823--110311864 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
110311813 GAAATTCTCC
110311823 TACCAT TACCAT TACCAT TACCAT TACCAT TACCAT TACCAT
1 TACCAT TACCAT TACCAT TACCAT TACCAT TACCAT TACCAT
110311865 CATTCTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (6 bp):
TACCAT
Found at i:110312733 original size:16 final size:17
Alignment explanation
Indices: 110312698--110312748 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 17
110312688 AAAGGGAAAA
110312698 AAATTATTGCAATTAATT
1 AAATTATT-CAATTAATT
*
110312716 AAATTATT-AATTACTT
1 AAATTATTCAATTAATT
*
110312732 -AATTAATTAAATTAATT
1 AAATT-ATTCAATTAATT
110312749 GCTTGTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 4 0.14
16 10 0.34
17 7 0.24
18 8 0.28
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (17 bp):
AAATTATTCAATTAATT
Found at i:110314756 original size:62 final size:59
Alignment explanation
Indices: 110314650--110314766 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 59
110314640 ATCACTTTAA
* * * * *
110314650 TATTAAATTAGTATAATACTTATAAAGATAAATATTAGATTAAATTTATTATTAAATCT
1 TATTAAATTAGTAGAATACTTATAAAGATAAACATTAAAATAAATTTAATATTAAATCT
*
110314709 TATTAAATTAGTAGAATATTTATCTACAAGATAAACATTAAAATAAATTTAATATTAA
1 TATTAAATTAGTAGAATACTTA--TA-AAGATAAACATTAAAATAAATTTAATATTAA
110314767 GATAATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 20 0.41
61 2 0.04
62 27 0.55
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (59 bp):
TATTAAATTAGTAGAATACTTATAAAGATAAACATTAAAATAAATTTAATATTAAATCT
Found at i:110319213 original size:46 final size:45
Alignment explanation
Indices: 110319024--110319335 Score: 195
Period size: 46 Copynumber: 6.6 Consensus size: 45
110319014 GTGCCAATGC
* *
110319024 CATGTCCCAGACATGGTCTTACACTAGCTATCATCTTCGAGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCT-TCGTC-TCGAGGCCGATG
* * * *
110319072 CCATGTCCCGGACATGGTCTTACACTAGCTCTC-ACATAACCG-TGCAGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TCGTC-T---CGAGGCCGATG
** * * *
110319122 CCATGTTTCAGACATGGTTTTACACT-GAC-ACATCTCGCA-GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTTCGTCTCG-AGGCCGATG
* *
110319168 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGGCCGATG
* *
110319214 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGAGGCCGATG
* * * * * *** *
110319260 CCATGTCCCAGATATGGTCTTA-ACTGGATCTCATATTTTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TCGTCTCGAGGCCGATG
110319307 CATGTCCCAGACATGTCTTACACTAGCTT
1 CATGTCCCAGACATGTCTTACACTAGCTT
110319336 ACACAAGTGA
Statistics
Matches: 210, Mismatches: 37, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
44 10 0.05
45 23 0.11
46 76 0.36
47 28 0.13
48 10 0.05
49 32 0.15
50 29 0.14
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGGCCGATG
Found at i:110319696 original size:30 final size:30
Alignment explanation
Indices: 110319655--110319713 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
110319645 AAATTTACAC
* *
110319655 CTTTGGTAAAATGACCATTTTGTCCCTATA
1 CTTTGGCAAAATGACCATTTTGCCCCTATA
110319685 CTTTGGCAAAATGACCATTTTGCCCCTAT
1 CTTTGGCAAAATGACCATTTTGCCCCTAT
110319714 GCTCGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTGCCCCTATA
Found at i:110321791 original size:31 final size:31
Alignment explanation
Indices: 110321755--110321816 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
110321745 ATTTGAATCA
* *
110321755 AATGCTTACTTTAATTCTTTTTCGGGATTAC
1 AATGCTCACTTTAATTCTTTTACGGGATTAC
110321786 AATGCTCACTTTAATTCTTTTACGGGATTAC
1 AATGCTCACTTTAATTCTTTTACGGGATTAC
110321817 TGACTCGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (31 bp):
AATGCTCACTTTAATTCTTTTACGGGATTAC
Found at i:110322015 original size:22 final size:22
Alignment explanation
Indices: 110321952--110322026 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
110321942 GCTATGCATG
*
110321952 CAAAATATGAAAGACAGAAACA
1 CAAAATATGAAAGACAGAAATA
* * * *
110321974 CAAAAGA-CATA-ACAGTGAAATG
1 CAAAATATGAAAGACA--GAAATA
110321996 CAAAATATGAAAGACAGAAATA
1 CAAAATATGAAAGACAGAAATA
110322018 CAAAATATG
1 CAAAATATG
110322027 TCTTGTTACA
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
20 3 0.08
21 2 0.05
22 30 0.75
23 2 0.05
24 3 0.08
ACGTcount: A:0.60, C:0.12, G:0.15, T:0.13
Consensus pattern (22 bp):
CAAAATATGAAAGACAGAAATA
Found at i:110334630 original size:28 final size:27
Alignment explanation
Indices: 110334567--110334636 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
110334557 ATAGTGAGTC
*
110334567 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
110334594 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
110334622 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
110334637 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:110341025 original size:40 final size:40
Alignment explanation
Indices: 110340970--110341179 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
110340960 AACATTGGAA
110340970 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110341010 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110341050 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
110341090 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
110341129 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
110341170 CTATATCCGG
1 ATATATCCGG
110341180 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Done.