Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 355 of 438
Found at i:110737443 original size:25 final size:24
Alignment explanation
Indices: 110737405--110737453 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
110737395 GTGGTGGATT
110737405 TTTATTTTATTTAATATTAATATA
1 TTTATTTTATTTAATATTAATATA
110737429 TTTATATTTATTTAATATTAATATA
1 TTTAT-TTTATTTAATATTAATATA
110737454 AAATGTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTATTTTATTTAATATTAATATA
Found at i:110740300 original size:20 final size:21
Alignment explanation
Indices: 110740253--110740300 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
110740243 CAACATAAAA
*
110740253 TTTAAATTTATTATTATATTT
1 TTTAAATATATTATTATATTT
*
110740274 TTAAAATAT-TTA-TATATTT
1 TTTAAATATATTATTATATTT
110740293 CTTTAAAT
1 -TTTAAAT
110740301 TTTTTAGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 7 0.30
20 9 0.39
21 7 0.30
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTAAATATATTATTATATTT
Found at i:110745111 original size:18 final size:19
Alignment explanation
Indices: 110745088--110745132 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
110745078 CTTTCTTTCT
110745088 TTTGCATT-CATT-CATGCA
1 TTTGCATTGCATTGCAT-CA
*
110745106 TTTGCATTGTATTGCATCA
1 TTTGCATTGCATTGCATCA
110745125 TTTGCATT
1 TTTGCATT
110745133 AGATTTTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 8 0.33
19 13 0.54
20 3 0.12
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:110748425 original size:27 final size:27
Alignment explanation
Indices: 110748365--110748441 Score: 111
Period size: 26 Copynumber: 2.8 Consensus size: 27
110748355 TTGAGACCTT
110748365 AAAAAAATTAAAAAAAAAAGAATCAATC
1 AAAAAAATT-AAAAAAAAAGAATCAATC
110748393 -AAAAAATTAAAAAAAAAGAATCAATC
1 AAAAAAATTAAAAAAAAAGAATCAATC
*
110748419 AAAAAAATCGAAAAAAGAAAGAA
1 AAAAAAAT-TAAAAAA-AAAGAA
110748442 AAATGAGAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
26 18 0.40
27 15 0.33
28 6 0.13
29 6 0.13
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.12
Consensus pattern (27 bp):
AAAAAAATTAAAAAAAAAGAATCAATC
Found at i:110749869 original size:44 final size:45
Alignment explanation
Indices: 110749815--110749939 Score: 164
Period size: 45 Copynumber: 2.8 Consensus size: 45
110749805 GATTGAATAC
*
110749815 CTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TAG-TAAGT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCTAA-T
* * *
110749859 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCTAAT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCTAAT
* * *
110749904 CTTATTTACCTGAAGATGCAGTGGAACAGATTGAAG
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
110749940 CTATAAATAA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 32 0.46
45 34 0.49
46 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (45 bp):
CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCTAAT
Found at i:110749925 original size:45 final size:44
Alignment explanation
Indices: 110749815--110750254 Score: 194
Period size: 44 Copynumber: 9.5 Consensus size: 44
110749805 GATTGAATAC
*
110749815 CTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTAGTAAGT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAGTAAGT
* * *
110749859 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCTAA-T
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAG-TAAGT
* * * *
110749904 CTTATTTACCTGAAGATGCAGTGGAACAGATTGAAGCTA-TAAAT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAGTAAGT
* * * * * **
110749948 AAATAGATATTATCTCTCTGAAGTTGCAGTAGAGTAGA-T-CA-TAGCAAAC
1 --CT---TATT-TC-C-CTGAAGTTGCAGTGGAGCAGATTGAAGTAGTAAGT
* * * *
110749997 CTTATCTCCCTGAAGTTGCAGTGAAGCAGTTGCAGTGAAGCAGGTTGAAGT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCA---G-ATTGAAGTA-G-T-AAGT
* * * * * * *
110750048 AGCAAGTCTTATCCCTCTGACGTTGCAGTGGAGTAGACTGAAG-ATTGAAGAC
1 --C--TTATT-TCCC--TGAAGTTGCAGTGGAGCAGATTGAAGTAGT-AAG-T
* * *
110750100 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAATTAGTAAGT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAGTAAGT
* * * * *
110750144 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAATTA-TGAGT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGTAGTAAGT
* * * *
110750188 CTTATCTCCCTGAAGTTGTAGTGGAGCAAACTGAAGATAGTGAA-T
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAGT-AAGT
* *
110750233 CTTATCTCTCTGAAGTTGCAGT
1 CTTATTTCCCTGAAGTTGCAGT
110750255 AAAAGAGATC
Statistics
Matches: 301, Mismatches: 60, Indels: 69
0.70 0.14 0.16
Matches are distributed among these distances:
41 16 0.05
42 1 0.00
43 7 0.02
44 103 0.34
45 88 0.29
46 8 0.03
47 6 0.02
48 5 0.02
49 8 0.03
50 3 0.01
51 9 0.03
52 17 0.06
53 2 0.01
54 6 0.02
55 3 0.01
56 4 0.01
58 15 0.05
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (44 bp):
CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAGTAAGT
Found at i:110750029 original size:14 final size:14
Alignment explanation
Indices: 110750010--110750039 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
110750000 ATCTCCCTGA
110750010 AGTTGCAGTGAAGC
1 AGTTGCAGTGAAGC
110750024 AGTTGCAGTGAAGC
1 AGTTGCAGTGAAGC
110750038 AG
1 AG
110750040 GTTGAAGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.37, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTGAAGC
Found at i:110750090 original size:44 final size:43
Alignment explanation
Indices: 110750024--110750254 Score: 216
Period size: 44 Copynumber: 5.2 Consensus size: 43
110750014 GCAGTGAAGC
* **
110750024 AGTTGCAGTGAAGCAGGTTGAAGTAGCAAGTCTTATC-CCTCTGA
1 AGTTGCAGTGGAGCAGACTGAAGTAG-AAGTCTTATCTCC-CTGA
* * * *
110750068 CGTTGCAGTGGAGTAGACTGAAGATTGAAGACCTTATCTCCCTGA
1 AGTTGCAGTGGAGCAGACTGAAG-TAGAAG-TCTTATCTCCCTGA
** *
110750113 AGTTGCAGTGGAGCAGGTTGAATTAGTAAGTCTTATCTCCCTGA
1 AGTTGCAGTGGAGCAGACTGAAGTAG-AAGTCTTATCTCCCTGA
* *
110750157 AGTTGCAGTGGAGTAGACTGAAATTATG-AGTCTTATCTCCCTGA
1 AGTTGCAGTGGAGCAGACTG-AAGTA-GAAGTCTTATCTCCCTGA
* * *
110750201 AGTTGTAGTGGAGCAAACTGAAGATAGTGAA-TCTTATCTCTCTGA
1 AGTTGCAGTGGAGCAGACTGAAG-TA--GAAGTCTTATCTCCCTGA
110750246 AGTTGCAGT
1 AGTTGCAGT
110750255 AAAAGAGATC
Statistics
Matches: 155, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
43 2 0.01
44 88 0.57
45 61 0.39
46 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
AGTTGCAGTGGAGCAGACTGAAGTAGAAGTCTTATCTCCCTGA
Found at i:110750175 original size:89 final size:88
Alignment explanation
Indices: 110750024--110750254 Score: 288
Period size: 89 Copynumber: 2.6 Consensus size: 88
110750014 GCAGTGAAGC
* * * *
110750024 AGTTGCAGTGAAGCAGGTTGAAGTAGCAAGTCTTATC-CCTCTGACGTTGCAGTGGAGTAGACTG
1 AGTTGCAGTGGAGCAGGTTGAAATAGTAAGTCTTATCTCC-CTGAAGTTGCAGTGGAGTAGACTG
110750088 AAGATTGAAGA-CCTTATCTCCCTGA
65 AA-ATT-AAGAGCCTTATCTCCCTGA
*
110750113 AGTTGCAGTGGAGCAGGTTGAATTAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGA
1 AGTTGCAGTGGAGCAGGTTGAAATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGA
* *
110750178 AATTATGAGTCTTATCTCCCTGA
66 AATTAAGAGCCTTATCTCCCTGA
* *** *
110750201 AGTTGTAGTGGAGCAAACTGAAGATAGTGAA-TCTTATCTCTCTGAAGTTGCAGT
1 AGTTGCAGTGGAGCAGGTTGAA-ATAGT-AAGTCTTATCTCCCTGAAGTTGCAGT
110750255 AAAAGAGATC
Statistics
Matches: 126, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
87 3 0.02
88 34 0.27
89 85 0.67
90 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (88 bp):
AGTTGCAGTGGAGCAGGTTGAAATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGA
AATTAAGAGCCTTATCTCCCTGA
Found at i:110750466 original size:44 final size:43
Alignment explanation
Indices: 110750324--110750476 Score: 157
Period size: 44 Copynumber: 3.5 Consensus size: 43
110750314 TACCATGGTG
*
110750324 AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCCAC
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCTAC
* * * * *
110750367 AAACCTTATCCCCCTGAAGTTGTAGTGGGGTA-AGTTCAAGTTAC
1 -AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGA-TTAAAGCTAC
* * *
110750411 AAGTCTAATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAG-TAGC
1 AA-TCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCTA-C
*
110750455 AGATCTTATCTCCTTGAAGTTG
1 A-ATCTTATCTCCCTGAAGTTG
110750477 CAATGAAGCA
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
43 5 0.06
44 83 0.92
45 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCTAC
Found at i:110752050 original size:22 final size:23
Alignment explanation
Indices: 110752024--110752082 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
110752014 ACTTGCATTT
110752024 GTATATTTTTTTAT-TTTTCTTA
1 GTATATTTTTTTATGTTTTCTTA
* *
110752046 TTATATTTTTTTATGTTTTTTTA
1 GTATATTTTTTTATGTTTTCTTA
* *
110752069 GTATGTTGTTTTAT
1 GTATATTTTTTTAT
110752083 ACATTATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 13 0.42
23 18 0.58
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (23 bp):
GTATATTTTTTTATGTTTTCTTA
Found at i:110754038 original size:13 final size:13
Alignment explanation
Indices: 110754021--110754055 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
110754011 CAAGACACAC
110754021 ACCCGTGTGTCCT
1 ACCCGTGTGTCCT
*
110754034 GCCCGTGTGTCCT
1 ACCCGTGTGTCCT
110754047 ACCCGTGTG
1 ACCCGTGTG
110754056 CTAATTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.37, G:0.29, T:0.29
Consensus pattern (13 bp):
ACCCGTGTGTCCT
Found at i:110763403 original size:23 final size:23
Alignment explanation
Indices: 110763364--110763407 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
110763354 GGAGTATGTG
*
110763364 GAGAATTCTACTGCCAATGGTTA
1 GAGAATTCTACTACCAATGGTTA
110763387 GAGAATTCTA-TCACCAATGGT
1 GAGAATTCTACT-ACCAATGGT
110763408 GGCAGGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (23 bp):
GAGAATTCTACTACCAATGGTTA
Found at i:110764774 original size:25 final size:26
Alignment explanation
Indices: 110764723--110764774 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
110764713 AGTACATGTA
*
110764723 AATTTTGTTATTATATAAATAAATAT
1 AATTTTATTATTATATAAATAAATAT
*
110764749 AATTTTATTTTTATAT-AATAAATAT
1 AATTTTATTATTATATAAATAAATAT
110764774 A
1 A
110764775 TAAATTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
AATTTTATTATTATATAAATAAATAT
Found at i:110767180 original size:20 final size:21
Alignment explanation
Indices: 110767147--110767185 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
110767137 TTTAATTTCA
*
110767147 AAAAATTGAGTAATTAAATTG
1 AAAAATTGAATAATTAAATTG
110767168 AAAAATT-AATAATTAAAT
1 AAAAATTGAATAATTAAAT
110767186 ATCTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AAAAATTGAATAATTAAATTG
Found at i:110768345 original size:46 final size:46
Alignment explanation
Indices: 110768234--110768704 Score: 519
Period size: 46 Copynumber: 10.0 Consensus size: 46
110768224 TTATCTTTGA
* * * * * **
110768234 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
**
110768281 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *** **
110768327 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
**
110768373 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTTTTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
**
110768420 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
*** **
110768466 CACGCTGCCATGTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGT
1 CA---TG---T-TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
*
110768519 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
110768565 CAGGCTGCCATGGTATCTTTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTA----TCTTTCAACCATGGTCTTACACATTTCATGT
* * * *
110768615 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
*
110768661 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
110768705 ATCAAAGAGC
Statistics
Matches: 374, Mismatches: 38, Indels: 25
0.86 0.09 0.06
Matches are distributed among these distances:
46 208 0.56
47 75 0.20
49 2 0.01
50 48 0.13
52 1 0.00
53 40 0.11
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
Found at i:110768495 original size:192 final size:188
Alignment explanation
Indices: 110768239--110768704 Score: 523
Period size: 192 Copynumber: 2.5 Consensus size: 188
110768229 TTTGACATGA
* * * * ** *
110768239 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTT--T-TTTGTCATGTTGCCATGGTATCTTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCATG-TGCCATGGTATCTTT
***
110768301 CAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTAT
65 CAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACAT
* * * * ** * * *
110768366 TTCCCGTCATGTTGCCATGGTA-TCTTTCAACCATGGTCTTACACATTTTTTTGTCATGT
130 TTCACATCAGGCTGCCATGGTATTCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** *
110768425 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGTGCCATGGTATC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-G--G-CATGTGCCATGGTATC
* ** * *
110768490 TTTCAACCATGGTCTTATTTATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
62 TTTCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTACA
*
110768555 CATTTCATATCAGGCTGCCATGGTATCTTTCTTTCAACCATGGTCTTACACATTTCATATCAGGC
127 CATTTCACATCAGGCTGCCATGGTA---TTCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
110768620 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTTATCAGG--T-TGCCATGGTATCTTTC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCATGTGCCATGGTATCTTTC
**
110768682 AACCATGGTCTTACACATTTCAT
66 AACCATGGTCTTATTCATTTCAT
110768705 ATCAAAGAGC
Statistics
Matches: 235, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
186 32 0.14
188 35 0.15
189 2 0.01
190 1 0.00
192 90 0.38
193 4 0.02
194 1 0.00
195 47 0.20
196 23 0.10
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (188 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCATGTGCCATGGTATCTTTC
AACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATT
TCACATCAGGCTGCCATGGTATTCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:110768578 original size:30 final size:30
Alignment explanation
Indices: 110768542--110768628 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 30
110768532 TATCTTTCAA
110768542 CCATGGTCTTACACATTTCATATCAGGCTG
1 CCATGGTCTTACACATTTCATATCAGGCTG
* * *
110768572 CCATGG---TA-TC-TTTC-TTTCA----A
1 CCATGGTCTTACACATTTCATATCAGGCTG
110768592 CCATGGTCTTACACATTTCATATCAGGCTG
1 CCATGGTCTTACACATTTCATATCAGGCTG
110768622 CCATGGT
1 CCATGGT
110768629 ATCTTTCAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 20
0.61 0.09 0.30
Matches are distributed among these distances:
20 6 0.15
23 2 0.05
24 5 0.12
25 8 0.20
26 5 0.12
27 2 0.05
30 13 0.32
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (30 bp):
CCATGGTCTTACACATTTCATATCAGGCTG
Found at i:110768648 original size:96 final size:92
Alignment explanation
Indices: 110768478--110768704 Score: 328
Period size: 96 Copynumber: 2.4 Consensus size: 92
110768468 CGCTGCCATG
*** ** *
110768478 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCATGCTGCCATGGTATCTTTCAAC
110768543 CATGGTCTTACACATTTCATATCAGGC
66 CATGGTCTTACACATTTCATATCAGGC
* *
110768570 TGCCATGGTATCTTTCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTT
1 TGCCATGGTA----TCTTTCAACCATGGTCTTACACATTTCATGTCATGCTGCCATGGTATCTTT
* *
110768635 CAACCATGGTCTTACACATTTCTTATCAGGT
62 CAACCATGGTCTTACACATTTCATATCAGGC
110768666 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
110768705 ATCAAAGAGC
Statistics
Matches: 121, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
92 39 0.32
96 82 0.68
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCATGCTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGGC
Found at i:110770871 original size:14 final size:15
Alignment explanation
Indices: 110770847--110770880 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
110770837 CTTTTATACT
110770847 AAATAATTAATAATA
1 AAATAATTAATAATA
110770862 AAATAA-TAATAATA
1 AAATAATTAATAATA
110770876 AAATA
1 AAATA
110770881 TCTCATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATAATTAATAATA
Found at i:110772168 original size:34 final size:34
Alignment explanation
Indices: 110772130--110772197 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
110772120 TAATTAGTGT
110772130 TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
1 TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
*
110772164 TTGATTTAAACAAATAAACAGAGTTTAACTAAAA
1 TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
110772198 GATTATTTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.53, C:0.09, G:0.10, T:0.28
Consensus pattern (34 bp):
TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
Found at i:110772190 original size:19 final size:19
Alignment explanation
Indices: 110772137--110772191 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 19
110772127 TGTTTGATTG
110772137 AAACAAATAAACAGAGTTT
1 AAACAAATAAACAGAGTTT
* **
110772156 -AAC-TA-AAATTGA-TTT
1 AAACAAATAAACAGAGTTT
110772171 AAACAAATAAACAGAGTTT
1 AAACAAATAAACAGAGTTT
110772190 AA
1 AA
110772192 CTAAAAGATT
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
15 3 0.12
16 8 0.31
17 2 0.08
18 8 0.31
19 5 0.19
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.25
Consensus pattern (19 bp):
AAACAAATAAACAGAGTTT
Found at i:110773483 original size:42 final size:42
Alignment explanation
Indices: 110773436--110773521 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
110773426 CAGAAATTTA
*
110773436 GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGCAAATAAG
1 GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGAAAATAAG
* *
110773478 GTCGCATAAGGAGTTTTTAACCTTTTCCACAAGGAAAATGAG
1 GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGAAAATAAG
110773520 GT
1 GT
110773522 TTTCTCCATC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (42 bp):
GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGAAAATAAG
Found at i:110776295 original size:36 final size:36
Alignment explanation
Indices: 110776248--110776320 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
110776238 TATATATATA
110776248 TATATATATATTAACTACAAGTTTGTTTTTAAAATC
1 TATATATATATTAACTACAAGTTTGTTTTTAAAATC
110776284 TATATATATATTAACTACAAGTTTGTTTTTAAAATC
1 TATATATATATTAACTACAAGTTTGTTTTTAAAATC
110776320 T
1 T
110776321 CCGATCTAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.48
Consensus pattern (36 bp):
TATATATATATTAACTACAAGTTTGTTTTTAAAATC
Found at i:110776403 original size:41 final size:41
Alignment explanation
Indices: 110776358--110776439 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
110776348 TAAGAAGCTG
110776358 AAAGATCTCTTGCAGATTAGCTTTGAATACTTTTATTCTTT
1 AAAGATCTCTTGCAGATTAGCTTTGAATACTTTTATTCTTT
110776399 AAAGATCTCTTGCAGATTAGCTTTGAATACTTTTATTCTTT
1 AAAGATCTCTTGCAGATTAGCTTTGAATACTTTTATTCTTT
110776440 CTTTAATTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (41 bp):
AAAGATCTCTTGCAGATTAGCTTTGAATACTTTTATTCTTT
Found at i:110779981 original size:57 final size:57
Alignment explanation
Indices: 110779893--110780000 Score: 171
Period size: 57 Copynumber: 1.9 Consensus size: 57
110779883 TTGTTCCAAC
* * * *
110779893 GAACATTATTATCTCTTGCTATCTCATGGACAGTTTGAGTTAATGTTAAAAGCTGAG
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
*
110779950 GAACATGACTATCTCTTGCTATTTCATGGACAATTTGAATTAATGTTAAAA
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAA
110780001 TAGTGTATGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (57 bp):
GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
Found at i:110780742 original size:22 final size:20
Alignment explanation
Indices: 110780699--110780757 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
110780689 TCAAAGAGAG
*
110780699 AAAAATAAGTTTTTAATCTTTT
1 AAAAATAA-TTTTT-ATATTTT
*
110780721 AAAGATTATATTTTTATATTTT
1 AAA-AATA-ATTTTTATATTTT
110780743 AAAAATAATTTTTAT
1 AAAAATAATTTTTAT
110780758 TATAATTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 8 0.25
21 3 0.09
22 12 0.38
23 8 0.25
24 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
AAAAATAATTTTTATATTTT
Found at i:110781620 original size:13 final size:14
Alignment explanation
Indices: 110781601--110781677 Score: 55
Period size: 14 Copynumber: 5.1 Consensus size: 14
110781591 TACAATATTC
110781601 ATATATTTTAATTTT
1 ATAT-TTTTAATTTT
*
110781616 ATATTTTTAATTTCG
1 ATATTTTTAATTT-T
* *
110781631 AGAATTTTTAAATTT
1 A-TATTTTTAATTTT
110781646 ATATATTTTAAGTTTTT
1 ATAT-TTTTAA--TTTT
* *
110781663 ATAATTTTATTTTT
1 ATATTTTTAATTTT
110781677 A
1 A
110781678 GATAATTGTT
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
14 16 0.33
15 12 0.24
16 15 0.31
17 6 0.12
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (14 bp):
ATATTTTTAATTTT
Found at i:110783827 original size:49 final size:49
Alignment explanation
Indices: 110783758--110783959 Score: 368
Period size: 49 Copynumber: 4.1 Consensus size: 49
110783748 GTACATAATA
110783758 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
110783807 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
110783856 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
110783905 ATATATGTGATAAGGCCTACTGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
110783954 ATATAT
1 ATATAT
110783960 ATATGTGGTA
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 148 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:110784085 original size:37 final size:36
Alignment explanation
Indices: 110784030--110784116 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
110784020 AACTTAGAAA
110784030 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
110784068 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
110784105 TATGTCCGGGTA
1 TATGTCCGGGTA
110784117 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:110787285 original size:71 final size:71
Alignment explanation
Indices: 110787199--110787362 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
110787189 CGATTTGTCT
110787199 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
110787264 CTTTCA
66 CTTTCA
110787270 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
110787335 CTTTCA
66 CTTTCA
110787341 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
110787363 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:110787400 original size:71 final size:70
Alignment explanation
Indices: 110787199--110787396 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
110787189 CGATTTGTCT
* * * *
110787199 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
110787264 CTTTCA
65 CTTTCA
* * * *
110787270 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
110787335 CTTTCA
65 CTTTCA
* *
110787341 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
110787397 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:110799124 original size:71 final size:71
Alignment explanation
Indices: 110799038--110799201 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
110799028 CGATTTGTCT
110799038 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
110799103 CTTTCA
66 CTTTCA
110799109 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
110799174 CTTTCA
66 CTTTCA
110799180 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
110799202 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:110799239 original size:71 final size:70
Alignment explanation
Indices: 110799038--110799235 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
110799028 CGATTTGTCT
* * * *
110799038 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
110799103 CTTTCA
65 CTTTCA
* * * *
110799109 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
110799174 CTTTCA
65 CTTTCA
* *
110799180 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
110799236 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:110806691 original size:71 final size:71
Alignment explanation
Indices: 110806605--110806768 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
110806595 CGATTTGTCT
110806605 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
110806670 CTTTCA
66 CTTTCA
110806676 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
110806741 CTTTCA
66 CTTTCA
110806747 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
110806769 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:110806806 original size:71 final size:70
Alignment explanation
Indices: 110806605--110806802 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
110806595 CGATTTGTCT
* * * *
110806605 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
110806670 CTTTCA
65 CTTTCA
* * * *
110806676 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
110806741 CTTTCA
65 CTTTCA
* *
110806747 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
110806803 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:110808178 original size:40 final size:40
Alignment explanation
Indices: 110808123--110808274 Score: 250
Period size: 40 Copynumber: 3.8 Consensus size: 40
110808113 GAGAATTGAG
*
110808123 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
110808163 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
110808203 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
110808243 AGCGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
110808275 ATCATGCTGG
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:110809116 original size:40 final size:40
Alignment explanation
Indices: 110809019--110809198 Score: 150
Period size: 40 Copynumber: 4.5 Consensus size: 40
110809009 TTGAATGGTG
* *
110809019 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTA-AGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG--AGAGTTACTAAA
* *
110809060 TCCGGG-TCAACTCCCGAAGGCATTTGTGAGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGAGAGTTACTAAA
* * * * *
110809100 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAA
* * * * * *
110809140 TCCGGGCTAATTCTCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTA-AA
* *
110809181 -CCGGTCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
110809199 ACAATCGAGC
Statistics
Matches: 112, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
39 1 0.01
40 84 0.75
41 27 0.24
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAA
Found at i:110809183 original size:80 final size:80
Alignment explanation
Indices: 110809020--110809238 Score: 185
Period size: 80 Copynumber: 2.7 Consensus size: 80
110809010 TGAATGGTGT
* * * * *
110809020 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
110809085 GTGAGAGTTACCAAAA
65 GTGAGAATCACCAAAA
* * * *
110809101 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCTCGAAGGCAATT
1 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* * *
110809165 GTGCGAATCACTATAA
65 GTGAGAATCACCAAAA
* * * * * * *
110809181 CC-GGTCTATGTCCCGAAGACAATCGAGCGAGTCG-CTATATCC-GGTTAAATCCCGAAGG
1 CCGGGT-TAAGTCCCGAAGGCATTCGTGCGAGT-GACTAAATCCGGGTCAACTCCCGAAGG
110809239 TACGTGATTC
Statistics
Matches: 110, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
79 16 0.15
80 69 0.63
81 25 0.23
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGAGAATCACCAAAA
Found at i:110811471 original size:49 final size:49
Alignment explanation
Indices: 110811402--110811652 Score: 466
Period size: 49 Copynumber: 5.1 Consensus size: 49
110811392 GTACATAATA
*
110811402 ATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
110811451 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
110811500 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
110811549 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
110811598 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
110811647 ATATAT
1 ATATAT
110811653 ATATATGTGG
Statistics
Matches: 197, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 197 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:110811780 original size:37 final size:37
Alignment explanation
Indices: 110811739--110811811 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
110811729 TTCCGGGTGA
110811739 GACCCGATGACTACGTGTGGAGATTATGTCCAGGTAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCAGGTAC
*
110811776 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 GACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
110811812 AGACTTCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCAGGTAC
Found at i:110818808 original size:14 final size:14
Alignment explanation
Indices: 110818789--110818817 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
110818779 GAAAAATAGG
110818789 AAGCTGACGTGGAT
1 AAGCTGACGTGGAT
110818803 AAGCTGACGTGGAT
1 AAGCTGACGTGGAT
110818817 A
1 A
110818818 CTTTTTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (14 bp):
AAGCTGACGTGGAT
Found at i:110820566 original size:2 final size:2
Alignment explanation
Indices: 110820559--110820585 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
110820549 TATAGGTTTG
110820559 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
110820586 AAAAGAGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:110821470 original size:69 final size:69
Alignment explanation
Indices: 110821359--110821496 Score: 206
Period size: 69 Copynumber: 2.0 Consensus size: 69
110821349 CTTCCCATTG
* *
110821359 GATGTCTATTAGTACATAATGTGCCTCATTAAAACCTTATTAGGAAAAACCCTGT-AGGATAAAA
1 GATGTCCATTAGTACATAATGTGCCTCATTAAAACCTTATTAGGAAAAACCCTATGA-GATAAAA
110821423 ACCTA
65 ACCTA
* * * *
110821428 GATGTCCATTGGTAGATAATGTGCCTCGTTAAAACCTTATTAGGAAAAGCCCTATGAGATAAAAA
1 GATGTCCATTAGTACATAATGTGCCTCATTAAAACCTTATTAGGAAAAACCCTATGAGATAAAAA
110821493 CCTA
66 CCTA
110821497 ATGAATGAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
69 61 0.98
70 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (69 bp):
GATGTCCATTAGTACATAATGTGCCTCATTAAAACCTTATTAGGAAAAACCCTATGAGATAAAAA
CCTA
Found at i:110825916 original size:18 final size:20
Alignment explanation
Indices: 110825893--110825931 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
110825883 ATGATAACGT
110825893 ATAATGA-AATAAGA-ATGA
1 ATAATGATAATAAGATATGA
110825911 ATAATGATAATAAGATATGA
1 ATAATGATAATAAGATATGA
110825931 A
1 A
110825932 ACATTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (20 bp):
ATAATGATAATAAGATATGA
Found at i:110826427 original size:21 final size:20
Alignment explanation
Indices: 110826403--110826449 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
110826393 TATAGGTATT
110826403 AATTTATTAATTATAAA-TAAA
1 AATTTATTAA--ATAAATTAAA
*
110826424 AATTAATTAAATAAATTAAA
1 AATTTATTAAATAAATTAAA
*
110826444 CATTTA
1 AATTTA
110826450 ATGTATCTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 5 0.23
20 8 0.36
21 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AATTTATTAAATAAATTAAA
Found at i:110836970 original size:19 final size:19
Alignment explanation
Indices: 110836946--110837021 Score: 98
Period size: 19 Copynumber: 3.8 Consensus size: 19
110836936 AATCTTTAAG
110836946 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
110836965 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
110836984 GAAATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
110837005 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
110837022 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
19 31 0.62
20 3 0.06
21 8 0.16
22 8 0.16
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:110840371 original size:44 final size:44
Alignment explanation
Indices: 110840319--110840496 Score: 146
Period size: 44 Copynumber: 4.0 Consensus size: 44
110840309 CAAGATTTGG
*
110840319 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
1 CATCCCTGTGTTTACAGGGAACAGATCGAAGATAGCAGATCTGA
* * ** * *** *
110840363 CATTCCTGTGCTTACAGCAAAACAGATCAAAGATTTTA-A-CATGG
1 CATCCCTGTGTTTACAG-GGAACAGATCGAAGATAGCAGATC-TGA
* * * * *
110840407 TATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTACAGGGAACAGA-TCGAAGATAGCAGATCTGA
*
110840451 CATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATCTGA
1 CATCCCTGTGTTTACAGGGAACAGATCGAAG--ATAGCAGATCTGA
110840497 TTTTCGGATG
Statistics
Matches: 99, Mismatches: 27, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
42 1 0.01
43 12 0.12
44 60 0.61
45 15 0.15
46 11 0.11
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (44 bp):
CATCCCTGTGTTTACAGGGAACAGATCGAAGATAGCAGATCTGA
Found at i:110840735 original size:175 final size:175
Alignment explanation
Indices: 110840444--110841025 Score: 859
Period size: 175 Copynumber: 3.3 Consensus size: 175
110840434 GAAGATAGCA
* * * *
110840444 GATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATCTGA-TTTTCGGATGT
1 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTT-GGATGT
*
110840508 TCTCACACCAAAGCAA-ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTAC
65 TTTCACACCAAAG-AAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTAC
*
110840572 ATAGTAGGTCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGAT
129 ATAGTAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
* * *
110840619 GATTTGGCATTATTGTGTTTATAAGGAACAAATCGAAAACATAGCAGATTTGACTTTTGGATGTT
1 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
* *
110840684 TTCACACCAAAGAAGATCTAAGATAACAGATATGGCATCTCCATTTCGACGGAGAGCAGGTACAT
66 TTCACACCAAAGAAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
* *
110840749 AGCAGGTCTAACCTTCAGAGGTTTATACTGAAGCAGATCCAAGAT
131 AGTAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
* *
110840794 GATTTGGAATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
1 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
* * *
110840859 CTT-ACACCAAAGCAGATCCAAGATAACTA-ATCTGGCATCTCCATTTTGATGGAGAGCAGGTAC
66 -TTCACACCAAAGAAGATCCAAGATAAC-AGATCTGGCATCTCCATTTCGACGGAGAGCAGGTAC
*
110840922 ATAATAGGTCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGAT
129 ATAGTAGGTCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGAT
* * * * * *
110840969 GGTTTGGCATGCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATTTGGCTTT
1 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTT
110841026 CACGTGTTTA
Statistics
Matches: 369, Mismatches: 33, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
174 2 0.01
175 357 0.97
176 10 0.03
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (175 bp):
GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
TTCACACCAAAGAAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
AGTAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
Found at i:110841510 original size:19 final size:19
Alignment explanation
Indices: 110841486--110841583 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
110841476 AATCTTTAAG
110841486 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
110841505 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
110841524 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
110841541 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
110841560 AATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
110841581 GAT
1 GAT
110841584 CTTATAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.66
21 8 0.11
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:110841516 original size:36 final size:35
Alignment explanation
Indices: 110841476--110841559 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 35
110841466 ATGGAAATAT
110841476 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC
110841512 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC
110841548 AATC-TTAGATAT
1 AATCTTTAGATAT
110841560 AATATGCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 36 0.80
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATGATATGC
Found at i:110844706 original size:41 final size:40
Alignment explanation
Indices: 110844597--110844738 Score: 180
Period size: 40 Copynumber: 3.5 Consensus size: 40
110844587 ACCCAAGTTT
* * * *
110844597 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * * *
110844636 CTTCGGGTCTTAACCCGGACATAGCAACTCTCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
110844676 CTTCGGGTCTTAGCCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAG-CCCGGATATAACAACTCGCACAAATGC
110844717 CTTCGGGTCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
110844739 CATTCAAATG
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 40 0.45
41 37 0.42
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:110846982 original size:19 final size:19
Alignment explanation
Indices: 110846940--110846984 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
110846930 ATTAGTCTCC
*
110846940 AAATATAATAAACATGATA
1 AAATATAATAAACATAATA
*
110846959 TAATA-AATAAATCATAATA
1 AAATATAATAAA-CATAATA
110846978 AAATATA
1 AAATATA
110846985 TCTAAGATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 6 0.29
19 14 0.67
20 1 0.05
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATATAATAAACATAATA
Found at i:110849685 original size:49 final size:49
Alignment explanation
Indices: 110849630--110849746 Score: 146
Period size: 49 Copynumber: 2.4 Consensus size: 49
110849620 ATGTCGTGTT
* * * *
110849630 CCAGATAGGTCTTATACTGACTTTCATATATTGA-GACCGATGCCATGTC
1 CCAGATAGGTCTTACACTGACTCTCATATATCGATG-CCAATGCCATGTC
* * *
110849679 CCAGATAGGTCTTACACTGGCTCTCATCTATCGATGTCAATGCCATGTC
1 CCAGATAGGTCTTACACTGACTCTCATATATCGATGCCAATGCCATGTC
*
110849728 CCAGACAGGTCTTACACTG
1 CCAGATAGGTCTTACACTG
110849747 TCACATAACA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
49 58 0.98
50 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (49 bp):
CCAGATAGGTCTTACACTGACTCTCATATATCGATGCCAATGCCATGTC
Found at i:110849872 original size:46 final size:46
Alignment explanation
Indices: 110849667--110849888 Score: 155
Period size: 46 Copynumber: 4.7 Consensus size: 46
110849657 ATATTGAGAC
* * * *
110849667 CGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGATGT
1 CGATG-CATGTCCCAGACAGGTCTTACACTAGCTCTCATC--TCAATGA
* * **
110849716 CAATGCCATGTCCCAGACAGGTCTTACACT-G-TCACATAACAA-G-
1 CGATG-CATGTCCCAGACAGGTCTTACACTAGCTCTCATCTCAATGA
* * * * * * * * *
110849759 CTAAATCCATGTCCGAGACAGGTCTTACACTAGGTTGTATATCCCGAGGA
1 C--GATGCATGTCCCAGACAGGTCTTACACTA-GCTCT-CATCTCAATGA
* *
110849809 CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATCTCAATGA
1 CGATGCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTCAATGA
* *
110849855 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
1 CGATGCATGTCCCAGACAGGTCTTACACTAGCTC
110849889 ACATACCACC
Statistics
Matches: 139, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 24 0.17
45 5 0.04
46 40 0.29
47 9 0.06
48 30 0.22
49 29 0.21
50 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTCAATGA
Found at i:110852658 original size:23 final size:23
Alignment explanation
Indices: 110852631--110852679 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
110852621 TGTTCTCTTT
110852631 ATTAAAAAATAAATATATTAATC
1 ATTAAAAAATAAATATATTAATC
110852654 ATTAAAAAATAAATATATTAATC
1 ATTAAAAAATAAATATATTAATC
110852677 ATT
1 ATT
110852680 TTACATTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (23 bp):
ATTAAAAAATAAATATATTAATC
Found at i:110853040 original size:3 final size:3
Alignment explanation
Indices: 110853032--110853058 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
110853022 CAAGTTTTTC
110853032 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
110853059 TGCTTTAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:110858420 original size:45 final size:44
Alignment explanation
Indices: 110858357--110858443 Score: 156
Period size: 45 Copynumber: 2.0 Consensus size: 44
110858347 CTATGCGATC
110858357 TGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
1 TGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
*
110858401 TGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGACA
1 TGAACTCA-TGAGTTGTGGTCTGAGTTCATGATATATGTGACA
110858444 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 8 0.20
45 33 0.80
ACGTcount: A:0.26, C:0.10, G:0.25, T:0.38
Consensus pattern (44 bp):
TGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
Found at i:110870985 original size:45 final size:44
Alignment explanation
Indices: 110870922--110871008 Score: 156
Period size: 45 Copynumber: 2.0 Consensus size: 44
110870912 CTATGCGATC
110870922 TGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
1 TGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
*
110870966 TGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGACA
1 TGAACTCA-TGAGTTGTGGTCTGAGTTCATGATATATGTGACA
110871009 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 8 0.20
45 33 0.80
ACGTcount: A:0.26, C:0.10, G:0.25, T:0.38
Consensus pattern (44 bp):
TGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
Found at i:110876665 original size:27 final size:26
Alignment explanation
Indices: 110876617--110876676 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
110876607 GCGAGGCTGC
*
110876617 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
110876644 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
110876670 CAGATAT
1 CAGATAT
110876677 ATATGTATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:110876765 original size:27 final size:26
Alignment explanation
Indices: 110876717--110876768 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
110876707 GCGAGGCTGC
*
110876717 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
110876743 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
110876769 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:110877446 original size:27 final size:27
Alignment explanation
Indices: 110877416--110877534 Score: 114
Period size: 27 Copynumber: 4.4 Consensus size: 27
110877406 GGAGCAAAAT
* *
110877416 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCCACAAGGGTATTTC
* * * *
110877443 GGTAATTCTACTCGATAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTC
* **
110877470 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTC
**
110877497 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCCACAAGG-GTATTTC
*
110877524 AGTAATTCTAC
1 GGTAATTCTAC
110877535 AACTTATCCA
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.04
27 74 0.96
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCCACAAGGGTATTTC
Found at i:110877521 original size:54 final size:54
Alignment explanation
Indices: 110877430--110877534 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
110877420 ATTTTACCCC
* * * *
110877430 ACAAGGGTATCTCGGTAATTCTACTCGATAGGGGTATTTCGGTATTTCTACCTT
1 ACAAGGGTATCTCGGTAATTCTACTCGACAGGAGTATTTCAGTAATTCTACCTT
* *
110877484 ACAAGGGTATTTCGGTAATTCTAC-CTTACAGGAGTATTTCAGTAATTCTAC
1 ACAAGGGTATCTCGGTAATTCTACTC-GACAGGAGTATTTCAGTAATTCTAC
110877535 AACTTATCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
53 1 0.02
54 43 0.98
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (54 bp):
ACAAGGGTATCTCGGTAATTCTACTCGACAGGAGTATTTCAGTAATTCTACCTT
Found at i:110884196 original size:2 final size:2
Alignment explanation
Indices: 110884189--110884220 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
110884179 CTCCAGAAAG
110884189 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
110884221 GTGGCGAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:110884566 original size:8 final size:8
Alignment explanation
Indices: 110884553--110884583 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
110884543 TTTTTACCAG
110884553 TTGGCCCA
1 TTGGCCCA
110884561 TTGGCCCA
1 TTGGCCCA
*
110884569 TTGGCCCG
1 TTGGCCCA
110884577 TTGGCCC
1 TTGGCCC
110884584 GTTTTCGGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.06, C:0.39, G:0.29, T:0.26
Consensus pattern (8 bp):
TTGGCCCA
Found at i:110884584 original size:8 final size:8
Alignment explanation
Indices: 110884552--110884586 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
110884542 CTTTTTACCA
110884552 GTTGGCCC
1 GTTGGCCC
*
110884560 ATTGGCCC
1 GTTGGCCC
*
110884568 ATTGGCCC
1 GTTGGCCC
110884576 GTTGGCCC
1 GTTGGCCC
110884584 GTT
1 GTT
110884587 TTCGGCCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.06, C:0.34, G:0.31, T:0.29
Consensus pattern (8 bp):
GTTGGCCC
Found at i:110884980 original size:27 final size:27
Alignment explanation
Indices: 110884950--110885068 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
110884940 GACGCAAAAT
* *
110884950 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
110884977 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
110885004 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
110885031 GGCAATTCTACCTTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
110885058 AGTAATTCTAC
1 GGTAATTCTAC
110885069 AACTTATCCA
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.03
27 75 0.97
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:110886889 original size:93 final size:93
Alignment explanation
Indices: 110886760--110886931 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
110886750 CGCCCATAAG
* * *
110886760 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
110886825 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
110886853 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
110886918 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
110886932 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:110886928 original size:46 final size:46
Alignment explanation
Indices: 110886753--110886928 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
110886743 TGTAACCCGC
* * * *
110886753 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
110886799 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
110886849 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
110886892 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
110886929 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:110886947 original size:46 final size:46
Alignment explanation
Indices: 110886802--110886940 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
110886792 TTCGCATCCA
110886802 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
110886850 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
110886895 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
110886941 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:110895738 original size:21 final size:21
Alignment explanation
Indices: 110895712--110895768 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
110895702 GCTCCAACAG
*
110895712 AGTTGAAAGAGTTGAAAGCTC
1 AGTTGAAAGAGTTAAAAGCTC
110895733 AGTTGAAAGAGTTAAAAGCTC
1 AGTTGAAAGAGTTAAAAGCTC
*
110895754 AGTTGCAAGAGTTAA
1 AGTTGAAAGAGTTAA
110895769 CAGATAGGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.25
Consensus pattern (21 bp):
AGTTGAAAGAGTTAAAAGCTC
Found at i:110932021 original size:13 final size:13
Alignment explanation
Indices: 110932003--110932028 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
110931993 ATATTATAAT
110932003 TATTTTATGTTAA
1 TATTTTATGTTAA
110932016 TATTTTATGTTAA
1 TATTTTATGTTAA
110932029 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:110934009 original size:28 final size:27
Alignment explanation
Indices: 110933946--110934015 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
110933936 ATAGTGAGTC
110933946 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
110933973 CACACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
110934001 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
110934016 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:110936668 original size:40 final size:40
Alignment explanation
Indices: 110936620--110936825 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
110936610 GGACTAAGAT
* *
110936620 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTA
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
110936660 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
110936700 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
110936740 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
110936780 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
110936819 CCGAAGG
1 CCGAAGG
110936826 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 15 0.09
40 144 0.91
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:110944456 original size:33 final size:33
Alignment explanation
Indices: 110944414--110944482 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
110944404 AATGAAATGA
110944414 GATAAAAGATTATATCGTAATAAGCTCATCTAT
1 GATAAAAGATTATATCGTAATAAGCTCATCTAT
*
110944447 GATAAAAGATTATATCGTAATGAGCTCATCTAT
1 GATAAAAGATTATATCGTAATAAGCTCATCTAT
110944480 GAT
1 GAT
110944483 TGATTTATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (33 bp):
GATAAAAGATTATATCGTAATAAGCTCATCTAT
Found at i:110944892 original size:21 final size:21
Alignment explanation
Indices: 110944863--110944906 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
110944853 TTGTGAAAAT
110944863 GTTACTATGATGATGACATA-GC
1 GTTACTATGAT-ATG-CATATGC
110944885 GTTA-TATGATATGCATATGC
1 GTTACTATGATATGCATATGC
110944905 GT
1 GT
110944907 ATGAGAGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.19
20 7 0.33
21 6 0.29
22 4 0.19
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (21 bp):
GTTACTATGATATGCATATGC
Found at i:110946462 original size:50 final size:49
Alignment explanation
Indices: 110946363--110946533 Score: 167
Period size: 50 Copynumber: 3.5 Consensus size: 49
110946353 GTGTGCTAGC
* * *
110946363 GTAAGA-CATGTCTGGGATAT-GCATCAGCCAC-ATTATG-AGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCAG-CACGAATATGCAGAGGTAGT
*
110946409 GTAAGACCATGTCTTGGACATGGCATCAGCACGAATATGCAAGAGGTAGT
1 GTAAGACCATGTCTGGGACATGGCATCAGCACGAATATGC-AGAGGTAGT
* * * * *
110946459 GTAAGACCATGTCTGGGACATGGCGTCAACCTCG-AT-TTC-GATAGTCAGT
1 GTAAGACCATGTCTGGGACATGGCATC-AGCACGAATATGCAGA-GGT-AGT
110946508 GTAAGACCATGTCTGGGACATGGCAT
1 GTAAGACCATGTCTGGGACATGGCAT
110946534 TGACTTGATG
Statistics
Matches: 106, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
46 6 0.06
47 17 0.16
48 14 0.13
49 30 0.28
50 35 0.33
51 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATCAGCACGAATATGCAGAGGTAGT
Found at i:110946522 original size:49 final size:47
Alignment explanation
Indices: 110946401--110946580 Score: 164
Period size: 50 Copynumber: 3.7 Consensus size: 47
110946391 CACATTATGA
* * * * * *
110946401 GAGCTAGTGTAAGACCATGTCTTGGACATGGCATCAGCACGAATATGCAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCG-AT-CG-AT
** *
110946451 GAGGTAGTGTAAGACCATGTCTGGGACATGGCGTCAACCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAA-CTCGA--TCGAT
* ** * *
110946501 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATCGAT
*
110946547 GAGCCAGTGTAAGACCATGGCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
110946581 GGGCATTCTA
Statistics
Matches: 110, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
46 4 0.04
47 31 0.28
48 4 0.04
49 31 0.28
50 35 0.32
51 4 0.04
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATCGAT
Found at i:110951905 original size:14 final size:14
Alignment explanation
Indices: 110951886--110951915 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
110951876 ATCTAGCTTG
110951886 GACGGGTGGTTTTT
1 GACGGGTGGTTTTT
110951900 GACGGGTGGTTTTT
1 GACGGGTGGTTTTT
110951914 GA
1 GA
110951916 GTGATCGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.07, G:0.43, T:0.40
Consensus pattern (14 bp):
GACGGGTGGTTTTT
Found at i:110956816 original size:17 final size:17
Alignment explanation
Indices: 110956794--110956827 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
110956784 AATCTTTGAG
110956794 AATTGCCACAACATTTT
1 AATTGCCACAACATTTT
**
110956811 AATTGCCTTAACATTTT
1 AATTGCCACAACATTTT
110956828 TCATTCATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (17 bp):
AATTGCCACAACATTTT
Found at i:110960101 original size:24 final size:24
Alignment explanation
Indices: 110960069--110960179 Score: 143
Period size: 24 Copynumber: 4.6 Consensus size: 24
110960059 AATCTCAAAT
*
110960069 GCACTATGTGTGCAATTTACTATG
1 GCACTATGTGTGCAATTTACTATA
*
110960093 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCAATTTACTATA
* *
110960117 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCAATTTACTATA
** *
110960141 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGC-AATTTACTATA
110960165 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
110960180 CGTTTGGTTG
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
23 2 0.03
24 71 0.91
25 5 0.06
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCAATTTACTATA
Found at i:110960121 original size:48 final size:48
Alignment explanation
Indices: 110960069--110960179 Score: 170
Period size: 48 Copynumber: 2.3 Consensus size: 48
110960059 AATCTCAAAT
** *
110960069 GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCGAACATAATA-A
*
110960117 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCGAACATAATAA
110960165 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
110960180 CGTTTGGTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:110962143 original size:24 final size:24
Alignment explanation
Indices: 110962108--110962158 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
110962098 AAGTCTGTTA
**
110962108 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
*
110962132 GGATAGGTTTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
110962156 GGA
1 GGA
110962159 GGAAATCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.39, T:0.25
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:110963617 original size:27 final size:26
Alignment explanation
Indices: 110963577--110963688 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
110963567 AGGAAGCGTC
*
110963577 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
110963604 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * *
110963631 CTAGTGGTTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCA-CATTATCTG-AT
* * * *
110963659 CTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
110963685 CTGG
1 CTGG
110963689 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.70
28 14 0.20
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:110966043 original size:28 final size:28
Alignment explanation
Indices: 110965981--110966211 Score: 213
Period size: 28 Copynumber: 8.3 Consensus size: 28
110965971 AGGCCATTAC
* *
110965981 AAAGCCTTTGTGGCAAACCTCT---ATG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
*
110966006 AAAGCCTTTATGGCGAACCTCTGAAAGG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
* * * *
110966034 AAAGCCTTTATGGAGAACCTTTGAAAAG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
* *
110966062 AAAGCCTTTATGTCGAACCTCTGAAAGG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
* *
110966090 AAAGCCTTTGTGGCAAACCTCCGTAAAGG
1 AAAGCCTTTGTGGCGAACCTCTG-AAAGG
* * * *
110966119 AAAGCTTTTGCGGCAAACCTCTACAAAGG
1 AAAGCCTTTGTGGCGAACCTCT-GAAAGG
* *
110966148 AAAGCCTTTGTGGTGAACCTTTGTAAA-G
1 AAAGCCTTTGTGGCGAACCTCTG-AAAGG
*
110966176 AAAGCCTTTGTGAC-AACCTCTGATAAAGG
1 AAAGCCTTTGTGGCGAACCTCTG--AAAGG
110966205 AAA-CCTT
1 AAAGCCTT
110966212 GTGAGAATCT
Statistics
Matches: 171, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
25 20 0.12
27 7 0.04
28 91 0.53
29 53 0.31
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (28 bp):
AAAGCCTTTGTGGCGAACCTCTGAAAGG
Found at i:110967833 original size:45 final size:46
Alignment explanation
Indices: 110967781--110967867 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 46
110967771 TTTTTTTGAG
* *
110967781 AAAACCACATTCATTTCTAAATG-ATTCCATTTCTCCATTTCAAAA
1 AAAACCACAATCATTTCTAAATGTATTCCATTTATCCATTTCAAAA
* * *
110967826 AAAACCACAATCATTTCTGAATGTATTCTATTTATCTATTTC
1 AAAACCACAATCATTTCTAAATGTATTCCATTTATCCATTTC
110967868 TATTTATTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 21 0.58
46 15 0.42
ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39
Consensus pattern (46 bp):
AAAACCACAATCATTTCTAAATGTATTCCATTTATCCATTTCAAAA
Found at i:110972949 original size:29 final size:29
Alignment explanation
Indices: 110972848--110972949 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 29
110972838 TTTATTAGGC
* * *
110972848 ACTATGTGCCAGTGATTATAGTTATCATGT
1 ACTATGTACCAGTG-TTATAATTATCAAGT
* ** * *
110972878 ACTTTGTACTGGTGTTACAATTATCAAGC
1 ACTATGTACCAGTGTTATAATTATCAAGT
*
110972907 ACT-T-TACGCTAGTGTTATATTTATCAAGT
1 ACTATGTAC-C-AGTGTTATAATTATCAAGT
110972936 ACTATGTACCAGTG
1 ACTATGTACCAGTG
110972950 GTGGGTACCA
Statistics
Matches: 55, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
27 3 0.05
28 1 0.02
29 36 0.65
30 12 0.22
31 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (29 bp):
ACTATGTACCAGTGTTATAATTATCAAGT
Found at i:110982666 original size:29 final size:29
Alignment explanation
Indices: 110982632--110982821 Score: 89
Period size: 29 Copynumber: 6.6 Consensus size: 29
110982622 TACTCGATTT
* * *
110982632 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
110982661 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
110982690 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
110982719 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
110982748 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
110982777 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
110982806 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
110982822 ATCTCGTCAC
Statistics
Matches: 139, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
28 1 0.01
29 137 0.99
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:110982724 original size:58 final size:58
Alignment explanation
Indices: 110982691--110982821 Score: 244
Period size: 58 Copynumber: 2.3 Consensus size: 58
110982681 CTTCGAGCTC
*
110982691 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
*
110982749 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
110982807 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
110982822 ATCTCGTCAC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.30
Consensus pattern (58 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
Found at i:110982753 original size:87 final size:87
Alignment explanation
Indices: 110982662--110982821 Score: 241
Period size: 87 Copynumber: 1.8 Consensus size: 87
110982652 ATTTAAGCCC
* *
110982662 GCACACACAGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACACAGTGCCATACACTTCCAGCAT-GCACACTTAGTGCCATATATTTCCAGCATGCACAC
110982726 TCAGTGCCATATTTTTCCAGCAT
65 TCAGTGCCATATTTTTCCAGCAT
** * *
110982749 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
1 GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
*
110982814 TAGTGCCA
66 CAGTGCCA
110982822 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 64 0.98
88 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (87 bp):
GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
CAGTGCCATATTTTTCCAGCAT
Found at i:110990526 original size:29 final size:29
Alignment explanation
Indices: 110990492--110990652 Score: 83
Period size: 29 Copynumber: 5.6 Consensus size: 29
110990482 TACTCGATTT
* * *
110990492 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
110990521 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
110990550 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
110990579 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
110990608 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
110990637 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
110990653 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 1 0.01
29 108 0.98
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:110990584 original size:58 final size:59
Alignment explanation
Indices: 110990491--110990652 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
110990481 ATACTCGATT
** * ** * *
110990491 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACACAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
***
110990549 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
*
110990608 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCA
110990653 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 86 0.95
59 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
Found at i:110992625 original size:40 final size:40
Alignment explanation
Indices: 110992565--110992748 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
110992555 TATTCGAATG
* *
110992565 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
110992605 ATATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
110992645 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
110992685 ATATCCGGGCCAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
110992725 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
110992749 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:110992705 original size:80 final size:80
Alignment explanation
Indices: 110992565--110992748 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 80
110992555 TATTCGAATG
* * * * *
110992565 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCAGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCAGACCAAGATCCGAAGGCA
* *
110992630 TTTGTGCGAGTTG-CT
66 TTTATGCGAG-TGACC
* * *
110992645 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCCAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCAGACCAAGAT-CCGAAGGC
*
110992709 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
110992725 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
110992749 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 88 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCAGACCAAGATCCGAAGGCA
TTTATGCGAGTGACC
Found at i:110997139 original size:17 final size:19
Alignment explanation
Indices: 110997098--110997139 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
110997088 ATGCAAGAAG
*
110997098 GTCGAGTTGTAGCTTATAG
1 GTCGAGTTGTAGCTTATAC
110997117 GTCGAGTTGTAGC-TAT-C
1 GTCGAGTTGTAGCTTATAC
110997134 GTCGAG
1 GTCGAG
110997140 GCAACTGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 3 0.14
19 13 0.59
ACGTcount: A:0.19, C:0.14, G:0.33, T:0.33
Consensus pattern (19 bp):
GTCGAGTTGTAGCTTATAC
Found at i:110999907 original size:40 final size:40
Alignment explanation
Indices: 110999825--111000043 Score: 218
Period size: 40 Copynumber: 5.5 Consensus size: 40
110999815 TATTCGAATG
* * * *
110999825 ATATCCGGGCTAAG-TCCCGAGGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTGACT
*
110999865 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAG-TGACT
* * *
110999905 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
* * *
110999945 ATATCCGGGCTAAG-TCTCGAAGGCATTTATGCTAGTGACA
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCGAGTGACT
* * **
110999985 ATATCCGGGCT-AGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
111000023 ATATCC-GGCTAA-ATTCCGAAG
1 ATATCCGGGCTAAGA-TCCGAAG
111000044 ATGCTTGGGT
Statistics
Matches: 151, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
37 5 0.03
38 22 0.15
39 11 0.07
40 110 0.73
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
Found at i:110999958 original size:80 final size:80
Alignment explanation
Indices: 110999825--111000007 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
110999815 TATTCGAATG
* * * *
110999825 ATATCCGGGCTAAGTCCCGAGGGCTTTTATGCTAGTGACTATATCCGGACTAAGATC-CGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCTCGAAGGC
* *
110999889 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACA
* *
110999905 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCTCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCTCGAAGGCA
*
110999970 TTTATGCTAGTGACA
66 TTTATGCGAGTGACA
110999985 ATATCCGGGCT-AGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
111000008 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 16 0.17
80 76 0.83
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCTCGAAGGCA
TTTATGCGAGTGACA
Found at i:111000312 original size:22 final size:22
Alignment explanation
Indices: 111000270--111000313 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
111000260 AAAATGTGCA
* *
111000270 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
111000292 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
111000314 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:111011157 original size:39 final size:39
Alignment explanation
Indices: 111011107--111011235 Score: 186
Period size: 39 Copynumber: 3.3 Consensus size: 39
111011097 TATATGAGAT
*
111011107 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
*
111011146 TGGAAAAATATCCGGACATGAGATCCGCAGGCTATATGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
* * * * **
111011185 TAGAAATATATCCAGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
111011224 TGGAAAAATATC
1 TGGAAAAATATC
111011236 TGGGTTAAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (39 bp):
TGGAAAAATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:111011252 original size:78 final size:77
Alignment explanation
Indices: 111011109--111011264 Score: 206
Period size: 78 Copynumber: 2.0 Consensus size: 77
111011099 TATGAGATTG
* * * *
111011109 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
1 GAAATATATCCAGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGC
111011174 AGGCTATATGCTA
66 AGGCT-TATGCTA
* * * **
111011187 GAAATATATCCAGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCTGG-GTTAAAGACCCG
1 GAAATATATCCAGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACCCG
111011251 CAGGCTTATGCTA
65 CAGGCTTATGCTA
111011264 G
1 G
111011265 TAATGTATTC
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
77 9 0.13
78 59 0.87
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (77 bp):
GAAATATATCCAGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGC
AGGCTTATGCTA
Found at i:111016413 original size:24 final size:24
Alignment explanation
Indices: 111016386--111016446 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
111016376 AAGGCTATGC
**
111016386 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACAT
*
111016410 GGCACTATGTGTGCGAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACAT
111016434 GGCACTATGTGTG
1 GGCACTATGTGTG
111016447 TGAATAAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACAT
Found at i:111024251 original size:25 final size:24
Alignment explanation
Indices: 111024164--111024227 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
111024154 AAGGCTATGC
* ** *
111024164 GGCACTATGTGTGCGTGATTACAT
1 GGCACTATGTGTGCGAGAAAACGT
111024188 GGCACTATGTGTGCGAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACGT
*
111024212 GGCACAATGTGTGCGA
1 GGCACTATGTGTGCGA
111024228 ATAAGTAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACGT
Found at i:111029915 original size:36 final size:34
Alignment explanation
Indices: 111029875--111029977 Score: 97
Period size: 34 Copynumber: 3.0 Consensus size: 34
111029865 CCGTTAGTTC
* *
111029875 CAGTTAGGGCCTTAGCCTATTTTTCAGTAACAGTAT
1 CAGTTAGGGCCTGAGCCCA--TTTCAGTAACAGTAT
*
111029911 CAGTTTGGGCCTGAGCCCATTTCAGTAACAG-AGGT
1 CAGTTAGGGCCTGAGCCCATTTCAGTAACAGTA--T
*
111029946 -AGTCT-GGGCCTTAGCCCATTTCAGT-ACAGTAT
1 CAGT-TAGGGCCTGAGCCCATTTCAGTAACAGTAT
111029978 GCAAACAAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
32 1 0.02
33 5 0.08
34 35 0.59
35 2 0.03
36 16 0.27
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (34 bp):
CAGTTAGGGCCTGAGCCCATTTCAGTAACAGTAT
Found at i:111029939 original size:34 final size:33
Alignment explanation
Indices: 111029896--111029977 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 33
111029886 TTAGCCTATT
*
111029896 TTTCAGTAACAGTATCAGTTTGGGCCTGAGCCCA
1 TTTCAGTAACAGTAT-AGTCTGGGCCTGAGCCCA
*
111029930 TTTCAGTAACAG-AGGTAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTA--TAGTCTGGGCCTGAGCCCA
111029964 TTTCAGT-ACAGTAT
1 TTTCAGTAACAGTAT
111029978 GCAAACAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
32 1 0.02
33 5 0.12
34 36 0.84
35 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (33 bp):
TTTCAGTAACAGTATAGTCTGGGCCTGAGCCCA
Found at i:111032365 original size:22 final size:21
Alignment explanation
Indices: 111032316--111032367 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
111032306 CGGTCTCTAG
* *
111032316 CACGGGTGTGTCCTAGGATCA
1 CACGGGCGTGTCCTAGGACCA
* *
111032337 CATGGGCGTGTCCTTTGGACCA
1 CACGGGCGTGTCC-TAGGACCA
111032359 CACGGGCGT
1 CACGGGCGT
111032368 ATGAGCCCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.15, C:0.27, G:0.35, T:0.23
Consensus pattern (21 bp):
CACGGGCGTGTCCTAGGACCA
Found at i:111034302 original size:15 final size:15
Alignment explanation
Indices: 111034284--111034315 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
111034274 TCATTGGTTG
111034284 TTGATTATGATTAAT
1 TTGATTATGATTAAT
111034299 TTGATTATGATTAAT
1 TTGATTATGATTAAT
111034314 TT
1 TT
111034316 ATAATTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (15 bp):
TTGATTATGATTAAT
Found at i:111035056 original size:20 final size:20
Alignment explanation
Indices: 111035011--111035058 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
111035001 GCTTGTACAG
*
111035011 GATTGCACTTCGGTGCCTCT
1 GATTGCACTTCAGTGCCTCT
111035031 -ATTTGCACTTCAGTGCCTCT
1 GA-TTGCACTTCAGTGCCTCT
111035051 GATTGCAC
1 GATTGCAC
111035059 AATCGTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (20 bp):
GATTGCACTTCAGTGCCTCT
Found at i:111037924 original size:47 final size:47
Alignment explanation
Indices: 111037853--111038075 Score: 302
Period size: 47 Copynumber: 4.7 Consensus size: 47
111037843 CCCTTCGGGA
* * * * *
111037853 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
111037900 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
111037947 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
**
111037994 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
111038043 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
111038076 GCGTAGAATC
Statistics
Matches: 159, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
47 96 0.60
49 63 0.40
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:111037931 original size:25 final size:25
Alignment explanation
Indices: 111037903--111037981 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
111037893 ACTCGGCCCT
111037903 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** *** *
111037928 ATCACAT-TGGCCA-TTAGGCCTT-
1 ATCACATATATACACTTTCACATTC
*
111037950 ATCACACATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
111037975 ATCACAT
1 ATCACAT
111037982 CGGCCATTAG
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 6 0.17
23 8 0.23
24 8 0.23
25 13 0.37
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:111051628 original size:19 final size:19
Alignment explanation
Indices: 111051594--111051632 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
111051584 GAATTCGTAC
*
111051594 TTTGGCCCATTTTCTCTGTT
1 TTTGGCCCAGTTTCTC-GTT
111051614 TTTGGCCC-GTTTCTCGTT
1 TTTGGCCCAGTTTCTCGTT
111051632 T
1 T
111051633 CTTTCGGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 6 0.33
20 8 0.44
ACGTcount: A:0.03, C:0.26, G:0.18, T:0.54
Consensus pattern (19 bp):
TTTGGCCCAGTTTCTCGTT
Found at i:111054768 original size:40 final size:40
Alignment explanation
Indices: 111054620--111054804 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
111054610 TAGAATGATG
* * *
111054620 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
111054660 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
111054699 TGCCGAGTTATG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
111054739 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
111054780 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
111054805 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 33 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:111054826 original size:79 final size:78
Alignment explanation
Indices: 111054621--111054837 Score: 219
Period size: 79 Copynumber: 2.7 Consensus size: 78
111054611 AGAATGATGT
* * *
111054621 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
111054684 TGTGCGAGTTACTAATG
62 TGTGCGAGTTACTAATA
* * * *
111054701 CCGAGTTATG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTATGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
111054764 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
** *
111054780 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
111054838 TATGTGATTC
Statistics
Matches: 113, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.59
80 43 0.38
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:111055015 original size:24 final size:24
Alignment explanation
Indices: 111054983--111055030 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
111054973 AATGAGCTAC
111054983 CGGCCTTTGGCTAAGTTGATCTTT
1 CGGCCTTTGGCTAAGTTGATCTTT
111055007 CGGCCTTTGGCTAAGTTGATCTTT
1 CGGCCTTTGGCTAAGTTGATCTTT
111055031 GTGTATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.21, G:0.25, T:0.42
Consensus pattern (24 bp):
CGGCCTTTGGCTAAGTTGATCTTT
Found at i:111060096 original size:40 final size:41
Alignment explanation
Indices: 111060052--111060276 Score: 270
Period size: 40 Copynumber: 5.7 Consensus size: 41
111060042 GCTACTCGTT
* * * *
111060052 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
111060092 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
111060132 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
111060172 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
111060212 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
111060253 CAAA-GCCTTC-GGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
111060277 CATCATTCGA
Statistics
Matches: 171, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 13 0.08
40 148 0.87
41 10 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:111068285 original size:40 final size:40
Alignment explanation
Indices: 111068241--111068426 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
111068231 GCTACTTGTT
* * *
111068241 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
111068281 CAAATGCCTTCGGGACTTATCACGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
111068321 AAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
111068361 CAAATGCCTT-TGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
111068402 CAAA-GCCTTCGGAACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
111068427 CATCATTCAA
Statistics
Matches: 125, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 110 0.88
41 12 0.10
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:111076817 original size:29 final size:29
Alignment explanation
Indices: 111076783--111076943 Score: 83
Period size: 29 Copynumber: 5.6 Consensus size: 29
111076773 TACTCGATTT
* * *
111076783 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
111076812 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
111076841 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
111076870 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
111076899 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
111076928 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
111076944 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 1 0.01
29 108 0.98
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:111076875 original size:58 final size:59
Alignment explanation
Indices: 111076782--111076943 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
111076772 ATACTCGATT
** * ** * *
111076782 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACACAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
***
111076840 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
*
111076899 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCA
111076944 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 86 0.95
59 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
Found at i:111078919 original size:40 final size:40
Alignment explanation
Indices: 111078859--111079042 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
111078849 TATTCGAATG
* *
111078859 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
111078899 ATATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
111078939 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
111078979 ATATCCGGGCCAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
111079019 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
111079043 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:111078999 original size:80 final size:80
Alignment explanation
Indices: 111078859--111079042 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 80
111078849 TATTCGAATG
* * * * *
111078859 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCAGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCAGACCAAGATCCGAAGGCA
* *
111078924 TTTGTGCGAGTTG-CT
66 TTTATGCGAG-TGACC
* * *
111078939 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCCAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCAGACCAAGAT-CCGAAGGC
*
111079003 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
111079019 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
111079043 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 88 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCAGACCAAGATCCGAAGGCA
TTTATGCGAGTGACC
Found at i:111083416 original size:19 final size:19
Alignment explanation
Indices: 111083392--111083429 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
111083382 TAATGCAAGA
111083392 AGGTCGAGTTGTAGCTTAT
1 AGGTCGAGTTGTAGCTTAT
111083411 AGGTCGAGTTGTAGCTTAT
1 AGGTCGAGTTGTAGCTTAT
111083430 TCGTCGAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.37
Consensus pattern (19 bp):
AGGTCGAGTTGTAGCTTAT
Done.