Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 358 of 438
Found at i:111874158 original size:9 final size:9
Alignment explanation
Indices: 111874126--111874202 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
111874116 TTTGATAAAC
111874126 ATGATATGT
1 ATGATATGT
* *
111874135 ATGGTATGCAC
1 ATGATATG--T
111874146 ATGATATGT
1 ATGATATGT
*
111874155 ATGATATGCAC
1 ATGATATG--T
*
111874166 ATGACATGT
1 ATGATATGT
*
111874175 ATGATATGCAC
1 ATGATATG--T
111874186 ATGATATGT
1 ATGATATGT
111874195 ATGATATG
1 ATGATATG
111874203 CACACGAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:111874214 original size:20 final size:20
Alignment explanation
Indices: 111874124--111874206 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
111874114 ATTTTGATAA
*
111874124 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
111874144 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
111874164 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
111874184 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
111874204 ACA
1 ACA
111874207 CGAGATGTTC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:111874334 original size:48 final size:48
Alignment explanation
Indices: 111874261--111874378 Score: 161
Period size: 48 Copynumber: 2.5 Consensus size: 48
111874251 AGGAAGTGCA
111874261 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATGAT
* *
111874309 AAAGGGCTTATGCCCCAGTTGTTAAAAGGGCTTTGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATGAT
*
111874356 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
111874379 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
47 9 0.14
48 45 0.71
49 9 0.14
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (48 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATGAT
Found at i:111874358 original size:23 final size:24
Alignment explanation
Indices: 111874260--111874378 Score: 163
Period size: 23 Copynumber: 5.0 Consensus size: 24
111874250 GAGGAAGTGC
111874260 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
111874284 -AAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
*
111874307 ATAAAGGGCTTATGCCCCAGTTGTT
1 A-AAAGGGCTTATGCCCCAGTTATT
111874332 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
111874355 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
111874379 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 40 0.47
24 15 0.18
25 30 0.35
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:111874603 original size:31 final size:31
Alignment explanation
Indices: 111874568--111874648 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 31
111874558 CGTTTACAGT
111874568 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
111874599 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
111874630 AAAGGGCTAT-GGCCCAGTA
1 AAA-GGCT-TCGGCCCAGTA
111874649 CATGTTGAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
31 32 0.71
32 12 0.27
33 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:111881919 original size:25 final size:25
Alignment explanation
Indices: 111881890--111881937 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
111881880 TTATAATATG
* * *
111881890 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
111881915 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
111881938 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:111882008 original size:9 final size:9
Alignment explanation
Indices: 111881976--111882052 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
111881966 TTTGATAAAC
111881976 ATGATATGT
1 ATGATATGT
* *
111881985 ATGGTATGCAC
1 ATGATATG--T
111881996 ATGATATGT
1 ATGATATGT
111882005 ATGATATGCAT
1 ATGATATG--T
*
111882016 ATGACATGT
1 ATGATATGT
*
111882025 ATGATATGCAC
1 ATGATATG--T
111882036 ATGATATGT
1 ATGATATGT
111882045 ATGATATG
1 ATGATATG
111882053 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (9 bp):
ATGATATGT
Found at i:111882027 original size:15 final size:16
Alignment explanation
Indices: 111882005--111882047 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
111881995 CATGATATGT
111882005 ATGATATGCATATG-AC
1 ATGATATG-ATATGCAC
111882021 ATG-TATGATATGCAC
1 ATGATATGATATGCAC
111882036 ATGATATG-TATG
1 ATGATATGATATG
111882048 ATATGCACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.20
15 13 0.52
16 7 0.28
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGATATGATATGCAC
Found at i:111882064 original size:20 final size:20
Alignment explanation
Indices: 111881974--111882056 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 20
111881964 ATTTTGATAA
*
111881974 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
111881994 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
111882014 ATATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
111882034 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
111882054 ACA
1 ACA
111882057 CGAGATGTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:111882184 original size:48 final size:48
Alignment explanation
Indices: 111882111--111882203 Score: 161
Period size: 48 Copynumber: 1.9 Consensus size: 48
111882101 AGGAAGTGCA
111882111 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATGAT
*
111882159 AAAGGGCTTATGCCCCAGTTGTTAAAAGGGCTTTGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTAT
111882204 TAAAAGAGGC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
48 34 0.79
49 9 0.21
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (48 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATGAT
Found at i:111882208 original size:23 final size:24
Alignment explanation
Indices: 111882110--111882214 Score: 160
Period size: 23 Copynumber: 4.4 Consensus size: 24
111882100 GAGGAAGTGC
111882110 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
111882134 -AAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
*
111882157 ATAAAGGGCTTATGCCCCAGTTGTT
1 A-AAAGGGCTTATGCCCCAGTTATT
111882182 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
111882205 AAAAGAGGCT
1 AAAAG-GGCT
111882215 AGGCCTCTAG
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
23 39 0.53
24 13 0.18
25 22 0.30
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:111882458 original size:31 final size:32
Alignment explanation
Indices: 111882423--111882490 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 32
111882413 CATTTACAGT
111882423 AAAGGCTTCGGCCCAATAATATGAAATATGA-
1 AAAGGCTTCGGCCCAATAATATGAAATATGAG
* **
111882454 AAAGGCTTCGGCCCAGTGTTATGAAATATGAG
1 AAAGGCTTCGGCCCAATAATATGAAATATGAG
111882486 AAAGG
1 AAAGG
111882491 GCTATGGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGAG
Found at i:111884475 original size:41 final size:41
Alignment explanation
Indices: 111884418--111884558 Score: 264
Period size: 41 Copynumber: 3.4 Consensus size: 41
111884408 TGTGGATACC
*
111884418 TGACATCTTGTGTGAGCAGCACTGTGTAGCTACGTCCTAAT
1 TGACAGCTTGTGTGAGCAGCACTGTGTAGCTACGTCCTAAT
*
111884459 TGACAGCTTGTGTGAGCAGCACTGTGTAGCTACGTTCTAAT
1 TGACAGCTTGTGTGAGCAGCACTGTGTAGCTACGTCCTAAT
111884500 TGACAGCTTGTGTGAGCAGCACTGTGTAGCTACGTCCTAAT
1 TGACAGCTTGTGTGAGCAGCACTGTGTAGCTACGTCCTAAT
111884541 TGACAGCTTGTGTGAGCA
1 TGACAGCTTGTGTGAGCA
111884559 AGCTCGTGAA
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 97 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGCAGCACTGTGTAGCTACGTCCTAAT
Found at i:111886495 original size:18 final size:18
Alignment explanation
Indices: 111886472--111886507 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
111886462 ATAAATATCC
111886472 TTATTTAATATGTACGAA
1 TTATTTAATATGTACGAA
111886490 TTATTTAATATGTACGAA
1 TTATTTAATATGTACGAA
111886508 CTCAGTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (18 bp):
TTATTTAATATGTACGAA
Found at i:111889378 original size:38 final size:38
Alignment explanation
Indices: 111889330--111889642 Score: 457
Period size: 38 Copynumber: 8.3 Consensus size: 38
111889320 GGCTCAAAGG
* * * *
111889330 CCCGAATATAATACCAGCACTAGGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
111889368 CCCGGATATAATACCAACACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
111889406 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*** * *
111889444 CTTAGATATAATACCAACACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
111889482 CCCGGATATAATACCAACACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
111889520 CCCGGACATATTACCAGCACGAAGCCTG-GGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
111889557 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
111889595 CCCGGATATAATACCAGCACAAAGCCTACGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
111889633 CCCGGATATA
1 CCCGGATATA
111889643 CATCAAATAT
Statistics
Matches: 248, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
37 35 0.14
38 213 0.86
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:111892733 original size:27 final size:27
Alignment explanation
Indices: 111892703--111892883 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
111892693 ACCCAAATAT
* * *
111892703 CCTCAATTTATAAAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
111892730 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
111892757 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* * * *
111892784 CGTTGATTTATAAAATTATCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
*
111892811 CCTCGATTTACAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
111892838 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
111892865 CCTCGATTTACAAAATTAC
1 CCTCGATTTATAGAATTAC
111892884 TAAAATACCC
Statistics
Matches: 137, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCATTTTAC
Found at i:111892793 original size:81 final size:81
Alignment explanation
Indices: 111892703--111892883 Score: 299
Period size: 81 Copynumber: 2.2 Consensus size: 81
111892693 ACCCAAATAT
* * *
111892703 CCTCAATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
1 CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAT
111892768 AGAATTACCATTTTAC
66 AGAATTACCATTTTAC
* * *
111892784 CGTTGATTTATAAAATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAT
1 CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAT
111892849 AGAATTACCATTTTAC
66 AGAATTACCATTTTAC
*
111892865 CCTCGATTTACAAAATTAC
1 CCTCGATTTATAAAATTAC
111892884 TAAAATACCC
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
CCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAT
AGAATTACCATTTTAC
Found at i:111892892 original size:27 final size:27
Alignment explanation
Indices: 111892659--111893027 Score: 226
Period size: 27 Copynumber: 13.7 Consensus size: 27
111892649 CCCCCAGTTG
* *
111892659 TAAAATTACCAAAGTACCC-CTGGTTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
* * * *
111892686 TAAAACTACCCAAATATCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
****
111892713 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ****
111892740 CAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *** * *
111892767 TAGAATTACCATTTTACCGTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ***
111892794 TAAAATTATCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ***
111892821 CAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ***
111892848 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
111892875 CAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
111892902 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
111892928 GTAAAATTACCAAAATACCC-CTGGTTTG
1 -TAAAATTACCAAAATACCCTC-GATTTA
* * *
111892956 TAAAATTACTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
111892983 TAAAATTACCAAAATACCCTTGATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
*
111893010 TAAAA-TACCGAAATACCC
1 TAAAATTACCAAAATACCC
111893028 CTGTAGGGTA
Statistics
Matches: 289, Mismatches: 48, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
26 15 0.05
27 272 0.94
28 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:111892893 original size:81 final size:81
Alignment explanation
Indices: 111892727--111892912 Score: 266
Period size: 81 Copynumber: 2.3 Consensus size: 81
111892717 ATTACCGTTT
* * *
111892727 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCGTTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
* ***
111892792 TATAAAATTATCATTT
66 TACAAAATTATCAAAA
111892808 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
111892873 TACAAAATTA-CTAAAA
66 TACAAAATTATC-AAAA
* * *
111892889 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCA
111892913 AAATACCCTC
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 1 0.01
81 93 0.99
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TACAAAATTATCAAAA
Found at i:111892920 original size:81 final size:81
Alignment explanation
Indices: 111892754--111893008 Score: 255
Period size: 81 Copynumber: 3.1 Consensus size: 81
111892744 ATTACCGTTT
* * *** * *
111892754 TACCCTCGATTTATAGAATTACCATTTTACCGTTGATTTATAAAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACT-AAAATACCCTTGGT
* ***
111892818 TTACAGAATTACCATTT
65 TTACAAAATTACCAAAA
*
111892835 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTT
111892900 TACAAAATTACCAAAA
66 TACAAAATTACCAAAA
* * *** * * *
111892916 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTACTAAAATACCCCTGG
1 TACCCTCGATTTA-TAGAATTACCATTTTACCCTC-GATTTATAAAATTACTAAAATACCCTTGG
**
111892979 TTTGTAAAATTACCAAAA
64 TTTACAAAATTACCAAAA
*
111892997 TACCCTTGATTT
1 TACCCTCGATTT
111893009 GTAAAATACC
Statistics
Matches: 145, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.02
81 140 0.97
82 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTT
TACAAAATTACCAAAA
Found at i:111893013 original size:81 final size:80
Alignment explanation
Indices: 111892876--111893056 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 80
111892866 CTCGATTTAC
*
111892876 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAA-TACCAA
**
111892941 AATACCCCTGGT-TTGT
65 AATACCCCT-GTAGGGT
** * ** *
111892957 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATACCGAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATACCAAA
111893022 ATACCCCTGTAGGGT
66 ATACCCCTGTAGGGT
* *
111893037 AGAATTACTGAAATACCCCT
1 AAAATTACTAAAATACCCCT
111893057 ATAGGGTAGA
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 2 0.02
80 34 0.39
81 52 0.59
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATACCAAA
ATACCCCTGTAGGGT
Found at i:111893261 original size:27 final size:27
Alignment explanation
Indices: 111893015--111893261 Score: 341
Period size: 27 Copynumber: 9.1 Consensus size: 27
111893005 ATTTGTAAAA
111893015 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
111893042 TACTGAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
111893069 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** *
111893096 TATTGAAATAACCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
111893123 TATCGAAATACTCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
111893150 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
111893177 TATCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
111893204 TATCGAAATACCCGTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * * *
111893231 TACCGATATACCCTTGTGGGGTAAAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
111893258 TACC
1 TACC
111893262 ATTTTGCCCT
Statistics
Matches: 196, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 196 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAT
Found at i:111893784 original size:31 final size:30
Alignment explanation
Indices: 111893729--111893811 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
111893719 CGCTTACAGT
*
111893729 AAAGGCTTCGGCC-AGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGT-ATATGATTTATAA
111893759 AAAGGCTTCGGCCTAGTCATATGATTTATAA
1 AAAGGCTTCGGCCTAGT-ATATGATTTATAA
111893790 AAAGGCTTCGGCCTAGTATATG
1 AAAGGCTTCGGCCTAGTATATG
111893812 TCGAGATTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 18 0.36
31 32 0.64
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCTAGTATATGATTTATAA
Found at i:111910986 original size:97 final size:97
Alignment explanation
Indices: 111910870--111911504 Score: 1123
Period size: 97 Copynumber: 6.5 Consensus size: 97
111910860 GTACATAATT
*
111910870 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATAT-TGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
111910934 AATGGCCGACGTGATGAATGTGAAACTGTATAC
66 AATGGCCGACGTGATGAATGTGAAA-TGTATAC
* *
111910967 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
111911032 AATGGCCGACGTGATGAATGTGAAATGTATAC
66 AATGGCCGACGTGATGAATGTGAAATGTATAC
*
111911064 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
111911129 AATGGCCGACGTGATGAATGTGAAATGTATTAC
66 AATGGCCGACGTGATGAATGTGAAATGTA-TAC
* *
111911162 ATATGTGATAA-GCCTAATGGCCGACGTGATGACTGTGAAACTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
111911226 AATGGCCGACGTGATGAATGTGAAATGTATAC
66 AATGGCCGACGTGATGAATGTGAAATGTATAC
111911258 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
111911323 AATGGCCGACGTGATGAATGTGAAAAT-TATAC
66 AATGGCCGACGTGATGAATGTG-AAATGTATAC
111911355 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
* * *
111911420 AATGGCCGATGTGATGAATGTGAACTGTATAT
66 AATGGCCGACGTGATGAATGTGAAATGTATAC
* *
111911452 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATAT
111911505 ATGTGGTAAA
Statistics
Matches: 519, Mismatches: 14, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
96 17 0.03
97 448 0.86
98 54 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (97 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
AATGGCCGACGTGATGAATGTGAAATGTATAC
Found at i:111911628 original size:37 final size:36
Alignment explanation
Indices: 111911573--111911659 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
111911563 AACTTAGAAA
111911573 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
111911611 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
111911648 TATGTCCGGGTA
1 TATGTCCGGGTA
111911660 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:111913561 original size:26 final size:26
Alignment explanation
Indices: 111913531--111913584 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
111913521 CAACCATTAA
111913531 TAGCCAACACTTTTGGCCAAATCAAT
1 TAGCCAACACTTTTGGCCAAATCAAT
*
111913557 TAGCCAATACTTTTGGCCAAATCAAT
1 TAGCCAACACTTTTGGCCAAATCAAT
111913583 TA
1 TA
111913585 TGACATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (26 bp):
TAGCCAACACTTTTGGCCAAATCAAT
Found at i:111921112 original size:30 final size:31
Alignment explanation
Indices: 111921056--111921118 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
111921046 CCTTTTCATG
111921056 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
111921087 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
111921117 TT
1 TT
111921119 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:111921361 original size:24 final size:24
Alignment explanation
Indices: 111921310--111921452 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
111921300 GCTTTATCAT
*
111921310 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
111921335 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
111921359 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
111921382 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
111921406 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
111921430 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
111921453 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:111921389 original size:47 final size:48
Alignment explanation
Indices: 111921310--111921451 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
111921300 GCTTTATCAT
* *
111921310 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
111921359 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
111921406 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
111921452 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:111921410 original size:71 final size:72
Alignment explanation
Indices: 111921309--111921452 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
111921299 TGCTTTATCA
*
111921309 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
111921374 GCCCTTT
66 GCCCTTT
* * **
111921381 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
111921444 AGCCCTTT
65 AGCCCTTT
111921452 T
1 T
111921453 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:111921527 original size:20 final size:20
Alignment explanation
Indices: 111921502--111921562 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
111921492 TTATGATTAC
111921502 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
111921522 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
111921542 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
111921562 A
1 A
111921563 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:111921636 original size:25 final size:25
Alignment explanation
Indices: 111921604--111921651 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
111921594 CATACTAAAC
* * *
111921604 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
111921629 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
111921652 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:111925164 original size:21 final size:19
Alignment explanation
Indices: 111925115--111925165 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
111925105 TTCATTAAAG
*
111925115 TTTTTTTATAAAATTAAAA
1 TTTTTTTATAAAATGAAAA
111925134 TTATTATTTATAAAAATGACAAA
1 TT-TT-TTTAT-AAAATGA-AAA
111925157 TTTTTTTAT
1 TTTTTTTAT
111925166 CAATTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 2 0.07
20 2 0.07
21 10 0.37
22 8 0.30
23 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTTTTTATAAAATGAAAA
Found at i:111928623 original size:40 final size:40
Alignment explanation
Indices: 111928564--111928705 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
111928554 AAATTGAATG
* * *
111928564 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
111928604 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
111928644 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
111928684 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
111928706 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:111928729 original size:40 final size:39
Alignment explanation
Indices: 111928602--111928731 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
111928592 ATGCTGGAAA
* * *
111928602 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
111928643 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
111928681 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
111928722 TTATATCCGG
1 TTATATCCGG
111928732 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:111931485 original size:30 final size:28
Alignment explanation
Indices: 111931451--111931515 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
111931441 ATACTTATAC
*
111931451 TAGTCCACATATTTCATT-TATTTTACATTT
1 TAGTCCACA-ATTT-ATTAT-TTTTACAATT
*
111931481 TAGTCCCTCAATTTATTATTTTTACAATT
1 TAGT-CCACAATTTATTATTTTTACAATT
111931510 TAGTCC
1 TAGTCC
111931516 TAATTACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 2 0.06
29 16 0.52
30 9 0.29
31 4 0.13
ACGTcount: A:0.26, C:0.18, G:0.05, T:0.51
Consensus pattern (28 bp):
TAGTCCACAATTTATTATTTTTACAATT
Found at i:111932370 original size:11 final size:10
Alignment explanation
Indices: 111932354--111932412 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
111932344 TTATTTTAAA
111932354 ATTTAAATATT
1 ATTT-AATATT
111932365 ATTTAATATT
1 ATTTAATATT
* *
111932375 TTTTCAT-TT
1 ATTTAATATT
111932384 ATTTTAA-ATT
1 A-TTTAATATT
*
111932394 -TTGAATATT
1 ATTTAATATT
111932403 ATTTAATATT
1 ATTTAATATT
111932413 TTTCATTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
8 4 0.11
9 5 0.13
10 25 0.66
11 4 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
ATTTAATATT
Found at i:111932385 original size:19 final size:18
Alignment explanation
Indices: 111932363--111932427 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
111932353 AATTTAAATA
111932363 TTATTTAATATTTTTTCAT
1 TTATTTAATA-TTTTTCAT
**
111932382 TTATTTTAA-ATTTTGAAT
1 TTA-TTTAATATTTTTCAT
111932400 ATTATTTAATATTTTTCAT
1 -TTATTTAATATTTTTCAT
*
111932419 TTATGTAAT
1 TTATTTAAT
111932428 TTTAATTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 19 0.50
19 14 0.37
20 5 0.13
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
TTATTTAATATTTTTCAT
Found at i:111932401 original size:38 final size:37
Alignment explanation
Indices: 111932343--111932422 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 37
111932333 ATGGTAACGG
111932343 TTTATTTTAAAATTTAAATATTATTTAATATTTTTTCA
1 TTTATTTTAAAATTTAAATATTATTTAATA-TTTTTCA
* *
111932381 TTTATTTTAAATTTTGAATATTATTTAATATTTTTCA
1 TTTATTTTAAAATTTAAATATTATTTAATATTTTTCA
111932418 TTTAT
1 TTTAT
111932423 GTAATTTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 12 0.30
38 28 0.70
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (37 bp):
TTTATTTTAAAATTTAAATATTATTTAATATTTTTCA
Found at i:111933496 original size:30 final size:30
Alignment explanation
Indices: 111933433--111933497 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
111933423 TACGGCACAA
* ** **
111933433 GCCCATCAATAGTGCCCACACAATCAATGG
1 GCCCATCAACAGCCCCCACACAATCAACAG
*
111933463 GCCCATCAACAGCCCCCACACAATCACCAG
1 GCCCATCAACAGCCCCCACACAATCAACAG
111933493 GCCCA
1 GCCCA
111933498 ATGCCTCAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.43, G:0.14, T:0.11
Consensus pattern (30 bp):
GCCCATCAACAGCCCCCACACAATCAACAG
Found at i:111937030 original size:125 final size:126
Alignment explanation
Indices: 111936807--111937058 Score: 362
Period size: 125 Copynumber: 2.0 Consensus size: 126
111936797 GGTCAATCAT
* * *
111936807 GAACTATTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAAAAATTTTGCTAACATTACATC
1 GAACTACTGTAGAAAAAGAGCGTCCACATGAGAGCTTTTTTCAAAAATTTTGCTAACAGTACATC
*
111936872 CTGCTTGAAGCATTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAACATTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* *** * * * *
111936933 GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGC-TTTTTCTGTATTTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACATGAGAGCTTTTTTCAAAAATTTTGCTAACAGTACATC
* * *
111936997 CTGCTTGAAACGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAACATTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
111937058 G
1 G
111937059 GTACAAATAG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
125 79 0.71
126 32 0.29
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACATGAGAGCTTTTTTCAAAAATTTTGCTAACAGTACATC
CTGCTTGAAACATTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
Found at i:111937172 original size:35 final size:32
Alignment explanation
Indices: 111937113--111937236 Score: 105
Period size: 30 Copynumber: 3.8 Consensus size: 32
111937103 TTAAAAAAAA
* *
111937113 TAAACCCTAATTTAATTAAATTAAACTTTAAACC
1 TAAACCCTAATTTAATTTATTTAAAC--TAAACC
*
111937147 TTAAACCCTAATTTAATTTATTT-AA--AACCC
1 -TAAACCCTAATTTAATTTATTTAAACTAAACC
*
111937177 TAAAACCCTAATCTACTTAATTTATTTAAA--AGACC
1 T-AAACCCTAA--T--TTAATTTATTTAAACTAAACC
111937212 TAAACCCTAATTTAATTTATTTAAA
1 TAAACCCTAATTTAATTTATTTAAA
111937237 ACCCTAAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
29 1 0.01
30 27 0.35
32 2 0.03
34 22 0.28
35 26 0.33
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.38
Consensus pattern (32 bp):
TAAACCCTAATTTAATTTATTTAAACTAAACC
Found at i:111937202 original size:34 final size:33
Alignment explanation
Indices: 111937159--111937288 Score: 162
Period size: 34 Copynumber: 3.9 Consensus size: 33
111937149 AAACCCTAAT
111937159 TTAATTTATTTAAAACCCTAAAACCCTAATCTAC
1 TTAATTTATTTAAAACCCTAAAACCCTAAT-TAC
*
111937193 TTAATTTATTTAAAAGACCT-AAACCCTAA-T--
1 TTAATTTATTTAAAA-CCCTAAAACCCTAATTAC
111937223 TTAATTTATTTAAAACCCTAAAAACCCTAATTTAC
1 TTAATTTATTTAAAACCCT-AAAACCCTAA-TTAC
*
111937258 TTAATTTATTTAAAAACCCT-AAACTCTAATT
1 TTAATTTATTT-AAAACCCTAAAACCCTAATT
111937289 TGAATAATAT
Statistics
Matches: 85, Mismatches: 3, Indels: 17
0.81 0.03 0.16
Matches are distributed among these distances:
29 3 0.04
30 15 0.18
31 9 0.11
32 1 0.01
33 3 0.04
34 32 0.38
35 14 0.16
36 8 0.09
ACGTcount: A:0.42, C:0.19, G:0.01, T:0.38
Consensus pattern (33 bp):
TTAATTTATTTAAAACCCTAAAACCCTAATTAC
Found at i:111937228 original size:64 final size:65
Alignment explanation
Indices: 111937142--111937289 Score: 246
Period size: 65 Copynumber: 2.3 Consensus size: 65
111937132 ATTAAACTTT
*
111937142 AAACCTTAAACCCTAATTTAATTTATTTAAAACCCT-AAAACCCTAATCTACTTAATTTATTTAA
1 AAACCCTAAACCCTAATTTAATTTATTTAAAACCCTAAAAACCCTAATCTACTTAATTTATTTAA
*
111937206 AAGA-CCTAAACCCTAATTTAATTTATTTAAAACCCTAAAAACCCTAATTTACTTAATTTATTTA
1 AA-ACCCTAAACCCTAATTTAATTTATTTAAAACCCTAAAAACCCTAATCTACTTAATTTATTTA
111937270 A
65 A
*
111937271 AAACCCTAAACTCTAATTT
1 AAACCCTAAACCCTAATTT
111937290 GAATAATATT
Statistics
Matches: 78, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
64 34 0.44
65 44 0.56
ACGTcount: A:0.43, C:0.20, G:0.01, T:0.36
Consensus pattern (65 bp):
AAACCCTAAACCCTAATTTAATTTATTTAAAACCCTAAAAACCCTAATCTACTTAATTTATTTAA
Found at i:111937301 original size:36 final size:34
Alignment explanation
Indices: 111937114--111937302 Score: 141
Period size: 34 Copynumber: 5.7 Consensus size: 34
111937104 TAAAAAAAAT
* *
111937114 AAACCCTAATTTAATTAAATTAAACTTT-AAA-CCTT
1 AAACCCTAATTTAA-TAAATT-TA-TTTAAAACCCTA
111937149 AAACCCTAA-TT--T-AATTTATTTAAAACCCTA
1 AAACCCTAATTTAATAAATTTATTTAAAACCCTA
* * * *
111937179 AAACCCTAATCTACTTAATTTATTTAAAAGACCT-
1 AAACCCTAATTTAATAAATTTATTTAAAA-CCCTA
111937213 AAACCCTAA-TT--T-AATTTATTTAAAACCCTAA
1 AAACCCTAATTTAATAAATTTATTTAAAACCCT-A
* *
111937244 AAACCCTAATTTACTTAATTTATTTAAAAACCCT-
1 AAACCCTAATTTAATAAATTTATTT-AAAACCCTA
*
111937278 AAACTCTAATTTGAATAATATTTAT
1 AAACCCTAATTT-AATAA-ATTTAT
111937303 AAAATAACAC
Statistics
Matches: 129, Mismatches: 9, Indels: 31
0.76 0.05 0.18
Matches are distributed among these distances:
28 3 0.02
29 7 0.05
30 29 0.22
31 12 0.09
32 2 0.02
33 2 0.02
34 36 0.28
35 24 0.19
36 14 0.11
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.38
Consensus pattern (34 bp):
AAACCCTAATTTAATAAATTTATTTAAAACCCTA
Found at i:111937832 original size:8 final size:8
Alignment explanation
Indices: 111937819--111937844 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
111937809 CACCATATCA
111937819 TAATAAAT
1 TAATAAAT
111937827 TAATAAAT
1 TAATAAAT
111937835 TAATAAAT
1 TAATAAAT
111937843 TA
1 TA
111937845 CCATTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATAAAT
Found at i:111938083 original size:22 final size:22
Alignment explanation
Indices: 111938056--111938102 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
111938046 TCTTTTTATA
111938056 TTTTAAAAAGTTATTTATAATT
1 TTTTAAAAAGTTATTTATAATT
** * *
111938078 TTTTAACTATTTTTTTATAATT
1 TTTTAAAAAGTTATTTATAATT
111938100 TTT
1 TTT
111938103 AAATTATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTAAAAAGTTATTTATAATT
Found at i:111938110 original size:22 final size:22
Alignment explanation
Indices: 111938069--111938111 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
111938059 TAAAAAGTTA
*
111938069 TTTATAATTTTTTAACTATTTT
1 TTTATAATTTTTAAACTATTTT
*
111938091 TTTATAATTTTTAAATTATTT
1 TTTATAATTTTTAAACTATTT
111938112 ATTGATATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATAATTTTTAAACTATTTT
Found at i:111939617 original size:10 final size:10
Alignment explanation
Indices: 111939602--111939631 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
111939592 CTAACTACCC
111939602 AAAAATTGAA
1 AAAAATTGAA
*
111939612 AAAAATAGAA
1 AAAAATTGAA
111939622 AAAAATTGAA
1 AAAAATTGAA
111939632 TGCAAAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (10 bp):
AAAAATTGAA
Found at i:111950153 original size:23 final size:23
Alignment explanation
Indices: 111950082--111950153 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 23
111950072 AAAAACTATA
*
111950082 AAAAATATTTAAAAACCCTAAACCCT
1 AAAAATA-TTAAAAA-CCTTAA-CCT
*
111950108 AATAATATT-AAAACCTTAGACCT
1 AAAAATATTAAAAACCTTA-ACCT
*
111950131 AAAAATATTAAAAATCTTAACCT
1 AAAAATATTAAAAACCTTAACCT
111950154 TAGGAGAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 19 0.47
24 13 0.32
25 2 0.05
26 6 0.15
ACGTcount: A:0.53, C:0.18, G:0.01, T:0.28
Consensus pattern (23 bp):
AAAAATATTAAAAACCTTAACCT
Found at i:111951813 original size:14 final size:14
Alignment explanation
Indices: 111951796--111951822 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
111951786 AATAATTCTT
111951796 AAATAAATTTTAAA
1 AAATAAATTTTAAA
111951810 AAATAAATTTTAA
1 AAATAAATTTTAA
111951823 CATGATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATAAATTTTAAA
Found at i:111954593 original size:16 final size:16
Alignment explanation
Indices: 111954574--111954604 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
111954564 CTTCTTCACT
111954574 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
111954590 TACTTACTTACTTAA
1 TACTCACTTACTTAA
111954605 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:111954610 original size:20 final size:20
Alignment explanation
Indices: 111954571--111954610 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
111954561 AAACTTCTTC
* *
111954571 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
111954591 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
111954611 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:111954925 original size:53 final size:54
Alignment explanation
Indices: 111954796--111955050 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
111954786 ACACGGGTAC
* * * * *
111954796 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
111954845 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
111954898 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
111954953 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
111955006 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGTTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
111955051 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 37 0.21
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:111954995 original size:108 final size:110
Alignment explanation
Indices: 111954843--111955042 Score: 325
Period size: 108 Copynumber: 1.8 Consensus size: 110
111954833 ATCCTTTTGA
* *
111954843 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
111954906 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
111954951 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
111955016 TGCCATGCCTTGGCATGGTCTTACATG
66 TGCCATGCCTTGGCATGGTCTTACATG
111955043 TTATCCTTAA
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:111961395 original size:9 final size:9
Alignment explanation
Indices: 111961381--111961422 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
111961371 ATTCAATACT
111961381 TTAATTTGG
1 TTAATTTGG
111961390 TTAATTTGG
1 TTAATTTGG
*
111961399 TTAATTAGG
1 TTAATTTGG
*
111961408 TTAATTTAG
1 TTAATTTGG
111961417 TTAATT
1 TTAATT
111961423 CAGTTAGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.55
Consensus pattern (9 bp):
TTAATTTGG
Found at i:111962459 original size:32 final size:32
Alignment explanation
Indices: 111962423--111962519 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
111962413 TGTATGCATT
111962423 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
111962455 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
111962487 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
111962519 T
1 T
111962520 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:111965995 original size:21 final size:21
Alignment explanation
Indices: 111965951--111965995 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
111965941 AGAAGTCCGG
* *
111965951 GTTGTATCGGTAGAACCCAGA
1 GTTGTATCAGTAGAACCCACA
111965972 GTTGTATCAGTAGAACTCC-CA
1 GTTGTATCAGTAGAAC-CCACA
111965993 GTT
1 GTT
111965996 CTACTAGTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (21 bp):
GTTGTATCAGTAGAACCCACA
Found at i:111971722 original size:50 final size:50
Alignment explanation
Indices: 111971647--111972085 Score: 520
Period size: 50 Copynumber: 8.9 Consensus size: 50
111971637 TGATGCTAGG
* *
111971647 GAGATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
111971697 GAGATACGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATC-GCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
111971746 GAGATACGAGAGCTAGTGTAAGACCATGTCTGGTACATGGCATCGGTCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
111971796 GAGATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
111971846 GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
111971894 -TGATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGTAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CCTC
* * * *
111971941 GATAGATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * * *
111971991 GATAGATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATC-GACT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
** * * *
111972039 TTGATGTGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
111972086 ACCTTACCCT
Statistics
Matches: 340, Mismatches: 39, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
45 31 0.09
46 1 0.00
47 8 0.02
48 40 0.12
49 52 0.15
50 208 0.61
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:111972000 original size:145 final size:147
Alignment explanation
Indices: 111971655--111972084 Score: 571
Period size: 145 Copynumber: 2.9 Consensus size: 147
111971645 GGGAGATATA
* * *
111971655 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAGATACGAGAGCTAATGTAAGA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGA
* * * * * *
111971720 CCATGTCTGGGACATGGCATCGCCTCGAGATACGAGAGCTAGTGTAAGACCATGTCTGGTACATG
66 CCATGTCTAGGACATGGCATCGACT--TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATG
*
111971785 GCATCGGTCTCGAGATACG
129 GCATCGGTCTCGAGAGACG
* *
111971804 AGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCGAGATATGAGAGCTAGTGTAAGA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGA
* *
111971869 CCATGTCTAGGACATGGCATCGGCTTGATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGC
66 CCATGTCTAGGACATGGCATCGACTTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGC
* *
111971932 ATCGGTAC-CGATAGATG
131 ATCGGT-CTCGAGAGACG
* * * * * *
111971949 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CGATAGATGAGAGCCAGTGTAAA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATATGAGAGCTAGTGTAAG
* *
111972013 ACCATGTCTAGGACATGGCATCGACTTTGATGTGTGAGCTAGTGTAAGACCATGTTTGGGACATG
65 ACCATGTCTAGGACATGGCATCGAC-TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATG
111972078 GCATCGG
129 GCATCGG
111972085 CACCTTACCC
Statistics
Matches: 249, Mismatches: 27, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
145 116 0.47
146 12 0.05
147 7 0.03
148 31 0.12
149 83 0.33
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (147 bp):
AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGA
CCATGTCTAGGACATGGCATCGACTTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGC
ATCGGTCTCGAGAGACG
Found at i:111977918 original size:90 final size:91
Alignment explanation
Indices: 111977799--111978010 Score: 218
Period size: 90 Copynumber: 2.4 Consensus size: 91
111977789 TGATACGCGA
* * * * *
111977799 TCCCGTGTAAGACCATATC-AGGGATATGGCTTCGACATCGATAAGTGA-TTTCGTATAAGACCA
1 TCCCGTGTAAGACCATGTCTAGGGACATGGCTTCAACACCGATAAGAGACTTT-GTATAAGACCA
* *
111977862 -AGTCTGGGACATGGTATTGATATGAGG
65 TA-TCTGGGACATGGCATCGATATGAGG
* * **
111977889 TCCCGTATAAGACCATGTCTAGGG-CATGGCATCAACACCGATTTGAGACTTTGTATAAGACCAT
1 TCCCGTGTAAGACCATGTCTAGGGACATGGCTTCAACACCGATAAGAGACTTTGTATAAGACCAT
* * * *
111977953 ATCTGGGATATTGCATCGATGTGTGG
66 ATCTGGGACATGGCATCGATATGAGG
* *
111977979 TCTCATGTAAGACCATGTCT-GGGACATGGCTT
1 TCCCGTGTAAGACCATGTCTAGGGACATGGCTT
111978011 TGGCACCCTA
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
89 3 0.03
90 88 0.89
91 8 0.08
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (91 bp):
TCCCGTGTAAGACCATGTCTAGGGACATGGCTTCAACACCGATAAGAGACTTTGTATAAGACCAT
ATCTGGGACATGGCATCGATATGAGG
Found at i:111979998 original size:11 final size:11
Alignment explanation
Indices: 111979984--111980010 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
111979974 AATATTAAAA
111979984 ATATATAGAAC
1 ATATATAGAAC
111979995 ATATATAGAAC
1 ATATATAGAAC
111980006 ATATA
1 ATATA
111980011 CAATACATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (11 bp):
ATATATAGAAC
Found at i:111980141 original size:39 final size:37
Alignment explanation
Indices: 111980084--111980182 Score: 101
Period size: 39 Copynumber: 2.6 Consensus size: 37
111980074 TACTTATACA
* * *
111980084 CATATATATATATATATATAAATAATAGTATTAGAAAT
1 CATATATATAAAGATATATAAATAATAATATTA-AAAT
*
111980122 CATATAGTATAAAGATATATAACTAATAATATTAAAAT
1 CATATA-TATAAAGATATATAAATAATAATATTAAAAT
* *
111980160 -ATATACATGATAATATATATAAA
1 CATATATAT-A-AAGATATATAAA
111980183 AGATATATGT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
36 2 0.04
37 6 0.12
38 20 0.39
39 23 0.45
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (37 bp):
CATATATATAAAGATATATAAATAATAATATTAAAAT
Found at i:111980187 original size:16 final size:16
Alignment explanation
Indices: 111980158--111980228 Score: 52
Period size: 19 Copynumber: 4.1 Consensus size: 16
111980148 TAATATTAAA
* *
111980158 ATATATACATGATAAT
1 ATATATAAAAGATAAT
111980174 ATATATAAAAGATATATGT
1 ATATATAAAAGATA-A--T
*
111980193 ATATATAAATATATAAT
1 ATATATAAA-AGATAAT
*
111980210 ATAATATTAAAATATAAT
1 AT-ATA-TAAAAGATAAT
111980228 A
1 A
111980229 ATACAACATA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
16 12 0.26
17 4 0.09
18 11 0.24
19 15 0.33
20 4 0.09
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.38
Consensus pattern (16 bp):
ATATATAAAAGATAAT
Found at i:111980216 original size:18 final size:17
Alignment explanation
Indices: 111980169--111980228 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 17
111980159 TATATACATG
*
111980169 ATAATAT-ATATAAAAG
1 ATAATATAATATAAAAT
*
111980185 ATATATGTATATATAAATAT
1 ATA-ATATA-ATATAAA-AT
111980205 ATAATATAATATTAAAAT
1 ATAATATAATA-TAAAAT
111980223 ATAATA
1 ATAATA
111980229 ATACAACATA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 3 0.08
17 3 0.08
18 11 0.31
19 15 0.42
20 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
ATAATATAATATAAAAT
Found at i:111980242 original size:21 final size:20
Alignment explanation
Indices: 111980199--111980242 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
111980189 ATGTATATAT
* * *
111980199 AAATATATAATATAATATTA
1 AAATATATAATACAACATAA
111980219 AAATATAATAATACAACATAA
1 AAATAT-ATAATACAACATAA
111980240 AAA
1 AAA
111980243 ACATGATAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
AAATATATAATACAACATAA
Found at i:111980437 original size:3 final size:3
Alignment explanation
Indices: 111980429--111980467 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
111980419 AATCATAAAC
*
111980429 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
111980468 CATTGGAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:111980590 original size:23 final size:22
Alignment explanation
Indices: 111980564--111980617 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
111980554 TGTATACACG
111980564 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
111980587 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
111980609 TAC-TAATAA
1 TACATAATAA
111980618 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:111980598 original size:3 final size:3
Alignment explanation
Indices: 111980567--111980637 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
111980557 ATACACGTAC
* * * *
111980567 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
111980614 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
111980638 CAAGGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:111982323 original size:87 final size:87
Alignment explanation
Indices: 111982114--111982783 Score: 457
Period size: 89 Copynumber: 7.7 Consensus size: 87
111982104 TTACTCGGTG
** * * * * *
111982114 TGTGATCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGAGTTTT-AAAAACTAGACATTAAA
1 TGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAC-AGAAATTGAA
* *
111982177 AATAGAAATTGAAAAATAGCTCAGCA
64 AA-ACAAATTG-AAAATACCTCAGCA
* * ** * * * * **
111982203 CGTGAGCAAAGGCTTAAGTCACTTCTCGCAATATGAGTTGATTTTTGA-AAACAGAATTTGCCAA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAA
*
111982267 ACAAATTTGAAAATACCTCGGCA
66 ACAAA-TTGAAAATACCTCAGCA
* * * * *
111982290 TGTGACCTGAGGTTCAACTCACCTCTCGTAATATGAGTTGATTCTTGA-AAATTATAAATTGAAA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-CAGAAATTG-AA
111982354 AAACATTAATTGAAAATACCTCAGC-
64 AAACA--AATTGAAAATACCTCAGCA
**
111982379 -GTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGATGAACAGAAATTGAAA
1 TGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
*
111982441 AACAAAAATTGAAAAGACCTCAGCA
65 AAC--AAATTGAAAATACCTCAGCA
*
111982466 TGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTG---
1 TGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
*
111982527 ---AAA-T-----TACCTCAGCG
65 AACAAATTGAAAATACCTCAGCA
* * * * * * * * *
111982541 TGTCCTGAGGCTCA-ACTCACCTCTCACAATAT-G-AGT-T-AATT--TTTTTGA-AGAGCAGAA
1 TG---TGA-CCTGAGGCTCA--ACTCAC-CTCTCGCAATATGAGTTGATTTTTGACA-AACAGAA
* *
111982598 ATTGGAAAACAGAAATCGAAAATACCTCAG--
58 ATT-GAAAA-ACAAATTGAAAATACCTCAGCA
* *
111982628 TGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGACAAACAGAAATTGA
*
111982693 AAAACAGAAATTGAAAAGACCTCAGCA
63 AAAAC--AAATTGAAAATACCTCAGCA
* *
111982720 TGTGAGCTGAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTGAAA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
111982784 TTACCTTAGC
Statistics
Matches: 454, Mismatches: 74, Indels: 106
0.72 0.12 0.17
Matches are distributed among these distances:
74 1 0.00
75 26 0.06
76 1 0.00
77 3 0.01
78 10 0.02
79 2 0.00
80 7 0.02
81 7 0.02
82 6 0.01
83 8 0.02
84 7 0.02
85 3 0.01
86 23 0.05
87 74 0.16
88 91 0.20
89 95 0.21
90 50 0.11
91 2 0.00
92 38 0.08
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (87 bp):
TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAA
ACAAATTGAAAATACCTCAGCA
Found at i:111982412 original size:88 final size:86
Alignment explanation
Indices: 111982125--111982783 Score: 407
Period size: 88 Copynumber: 7.6 Consensus size: 86
111982115 GTGATCCTGA
** * * * * * *
111982125 GCTCAACTCATTTCTCGCAATATGAATTGAGTTTTAAAAACTAGACATTAAAAATAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC-AGAAATTGAAAA-ACAAATTG-A
* * **
111982190 AAATAGCTCAGCACGTGAGC-AAAG
63 AAATACCTCAGCA-GTGACCTCGAG
* * * * **
111982214 GCTTAAGTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCCAAACAAATTTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAAA-TTGAAA
*
111982279 ATACCTCGGCATGTGACCT-GAG
65 ATACCTCAGCA-GTGACCTCGAG
* * * * *
111982301 GTTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAATTATAAATTGAAAAAACATTAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CAGAAATTG-AAAAACA--AATTG
111982366 AAAATACCTCAGC-GTG-CCTCGAG
62 AAAATACCTCAGCAGTGACCTCGAG
*
111982389 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGATGAACAGAAATTGAAAAACAAAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAAAAC--AAATTGA
* *
111982453 AAAGACCTCAGCATGTGAGC-CGAG
63 AAATACCTCAGCA-GTGACCTCGAG
* * * * *
111982477 GCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTGAAATTAC---CTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAA-AACAAATTGAA
** *
111982539 CGTGTCCT--G-AG-G--CTC-A-
64 AAT-ACCTCAGCAGTGACCTCGAG
* * * * * * * *
111982555 ACTCACCTCTCACAATAT-G-AGT-T-AATT--TTTTTGAAGAGCAGAAATTGGAAAACAGAAAT
1 GCTCA--ACTCAC-CTCTCGCAATATGAGTTGATTTTTGAA-AACAGAAATT-GAAAA-ACAAAT
* * *
111982614 CGAAAATACCTCAG-TGTGCCCT-GAG
60 TGAAAATACCTCAGCAGTGACCTCGAG
*
111982639 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGAAAAACAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGA-AAACAGAAATTGAAAAAC--AAAT
* *
111982704 TGAAAAGACCTCAGCATGTGAGCT-GAG
60 TGAAAATACCTCAGCA-GTGACCTCGAG
*
111982731 GCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAA
111982784 TTACCTTAGC
Statistics
Matches: 441, Mismatches: 82, Indels: 94
0.71 0.13 0.15
Matches are distributed among these distances:
74 1 0.00
75 16 0.04
76 5 0.01
77 3 0.01
78 8 0.02
79 5 0.01
80 9 0.02
81 6 0.01
82 7 0.02
83 6 0.01
84 6 0.01
85 5 0.01
86 26 0.06
87 72 0.16
88 90 0.20
89 88 0.20
90 49 0.11
91 2 0.00
92 37 0.08
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (86 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAAATTGAAAA
TACCTCAGCAGTGACCTCGAG
Found at i:111982698 original size:14 final size:14
Alignment explanation
Indices: 111982681--111982709 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
111982671 TTTTTTGACG
111982681 AACAGAAATTGAAA
1 AACAGAAATTGAAA
111982695 AACAGAAATTGAAA
1 AACAGAAATTGAAA
111982709 A
1 A
111982710 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:111982734 original size:254 final size:254
Alignment explanation
Indices: 111982259--111983074 Score: 1006
Period size: 254 Copynumber: 3.3 Consensus size: 254
111982249 GAAAACAGAA
* * * * * * *
111982259 TTTGCCAAACA-AATTTGAAAATACCTCGGCATGTGACCTGAGGTTCAACTCACCTCTCGTAATA
1 TTTGACAAACAGAAATTGAAATTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATA
* * ** * * ** *
111982323 TGAGTTGA--TTCTTGAAAATTATAAATTGAAAAAACATTAATTGAAAATACCTCAGCGTG-CCT
64 TGAGTTGATTTTTTTGAAGAGCAGAAATTG-GAAAACAGAAATCGAAAATACCTCAGCGTGCCCT
*
111982385 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTGATGAACAGAAATTGAAAAACAA
128 -GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGAAAAACAA
111982446 AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGATT
192 AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGATT
*
111982509 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATG
1 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
111982574 AGTTAATTTTTTTGAAGAGCAGAAATTGGAAAACAGAAATCGAAAATACCTCAGTGTGCCCTGAG
66 AGTTGATTTTTTTGAAGAGCAGAAATTGGAAAACAGAAATCGAAAATACCTCAGCGTGCCCTGAG
*
111982639 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGAAAAACAGAAAT
131 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGAAAAACAAAAAT
*
111982704 TGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCGATATGAGTTGATT
196 TGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGATT
* *
111982763 TTTGACAAACAGAAATTGAAATTACCTTAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATG
1 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
111982828 AGTTGATTTTTTTGAAGAGCAGAAATT-GAAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGA
66 AGTTGATTTTTTTGAAGAGCAGAAATTGGAAAA-CAGAAATCGAAAATACCTCAGCGTGCCCTGA
* * **
111982892 GGCTCAACTCACCTCTGGCAGTATGAGTTGA---TTTTT---G-AC----------AAACAACGA
130 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGAAAAACAAAAA
* * ** **
111982940 TTGAAAATACCTCA-C-CGTGCCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTT
195 TTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGA--TT
* * * * **
111983000 TTTGA-AAAAAGAATTTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCCCTATG
1 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
111983064 AGTTGATTTTT
66 AGTTGATTTTT
111983075 GGAACAGAAA
Statistics
Matches: 508, Mismatches: 47, Indels: 36
0.86 0.08 0.06
Matches are distributed among these distances:
235 35 0.07
236 63 0.12
237 26 0.05
247 2 0.00
248 1 0.00
249 35 0.07
250 68 0.13
251 39 0.08
253 5 0.01
254 234 0.46
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (254 bp):
TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAGAGCAGAAATTGGAAAACAGAAATCGAAAATACCTCAGCGTGCCCTGAG
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGAAAAACAAAAAT
TGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGATT
Found at i:111982862 original size:14 final size:14
Alignment explanation
Indices: 111982839--111982873 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
111982829 GTTGATTTTT
*
111982839 TTGAAGAGCAGAAA
1 TTGAAAAGCAGAAA
111982853 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
*
111982867 TCGAAAA
1 TTGAAAA
111982874 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.09, G:0.23, T:0.14
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:111982923 original size:89 final size:89
Alignment explanation
Indices: 111982764--111982927 Score: 249
Period size: 89 Copynumber: 1.8 Consensus size: 89
111982754 GAGTTGATTT
* * * *
111982764 TTGACAAACAGAAATTGAAATTACCTTAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGA
111982829 GTTGATTTTTTTGAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
* * *
111982853 TTGA-AAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTGGCAGTATG
1 TTGACAAA-CAGAAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATG
111982917 AGTTGATTTTT
65 AGTTGATTTTT
111982928 GACAAACAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
88 3 0.04
89 64 0.96
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (89 bp):
TTGACAAACAGAAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAGAGCAGAAA
Found at i:111982945 original size:162 final size:163
Alignment explanation
Indices: 111982604--111983020 Score: 563
Period size: 162 Copynumber: 2.6 Consensus size: 163
111982594 AGAAATTGGA
* ** **
111982604 AAACAGAAATCGAAAATACCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCACCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
111982669 TTTTTTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCT
66 -TTTTTTTGAAGAACAGAAATTGAAAAACAGAAATCGAAAAGACCTCAGCA-GTGACCTGAGGCT
111982734 CAACTCACCTCTCGCGATATGAGTTGATTTTTGAC
129 CAACTCACCTCTCGCGATATGAGTTGATTTTTGAC
* * * * *
111982769 AAACAGAAATTGAAATTACCTTAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCACCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
111982834 TTTTTTTGAAGAGCAGAAATTGAAAAGCAGAAATCGAAAATACCTCAGC-GTGCCCTGAGGCTCA
66 TTTTTTTGAAGAACAGAAATTGAAAAACAGAAATCGAAAAGACCTCAGCAGTGACCTGAGGCTCA
*
111982898 ACTCACCTCTGGC-AGTATGAGTTGATTTTTGAC
131 ACTCACCTCTCGCGA-TATGAGTTGATTTTTGAC
* * *
111982931 AAACA-ACGATTGAAAATACCTCACCGTGCCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAACAGA-AATTGAAAATACCTCACCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
111982995 ATTTTTTTGAA-AAAAGAATTTGAAAA
65 ATTTTTTTGAAGAACAGAAATTGAAAA
111983021 TACCTCAGCA
Statistics
Matches: 225, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
161 14 0.06
162 108 0.48
164 44 0.20
165 59 0.26
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.27
Consensus pattern (163 bp):
AAACAGAAATTGAAAATACCTCACCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGAAGAACAGAAATTGAAAAACAGAAATCGAAAAGACCTCAGCAGTGACCTGAGGCTCA
ACTCACCTCTCGCGATATGAGTTGATTTTTGAC
Found at i:111982990 original size:73 final size:72
Alignment explanation
Indices: 111982869--111983075 Score: 274
Period size: 73 Copynumber: 2.8 Consensus size: 72
111982859 AGCAGAAATC
* *
111982869 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTGGCAGTATGAGTTGATTTTTGACAAA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAA
111982934 CAACG-A-TT
65 -AA-GAATTT
* * *
111982942 GAAAATACCTCACCGTGCCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA
111983007 AAAGAATTT
64 AAAGAATTT
* * **
111983016 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCCCTATGAGTTGATTTTTG
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
111983076 GAACAGAAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
72 7 0.06
73 52 0.44
74 52 0.44
75 7 0.06
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (72 bp):
GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
AGAATTT
Found at i:111983044 original size:74 final size:75
Alignment explanation
Indices: 111982869--111983074 Score: 278
Period size: 74 Copynumber: 2.8 Consensus size: 75
111982859 AGCAGAAATC
* *
111982869 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTGGCAGTATGAGTTGA--TTTTTGACA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
111982932 AACAACGATT
66 AACAACGATT
* * *
111982942 GAAAATACCTCACCGTGCCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGA-A
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
111983006 AA-AA-GAATTT
66 AACAACG-A-TT
* * **
111983016 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCCCTATGAGTTGATTTTT
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
111983075 GGAACAGAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
72 1 0.01
73 52 0.44
74 57 0.49
75 7 0.06
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (75 bp):
GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
AACAACGATT
Found at i:111995268 original size:120 final size:120
Alignment explanation
Indices: 111995141--111995388 Score: 478
Period size: 120 Copynumber: 2.1 Consensus size: 120
111995131 TGAACATATA
*
111995141 CAATAATATTAGGAATACTATGGACAAGGAAAATACATTTATACTAATAATAGTAAAAGATGTAT
1 CAATAATATTAGGAATACTATGGACAAAGAAAATACATTTATACTAATAATAGTAAAAGATGTAT
111995206 GTACACCAAATAATAATATAATAAGTAGCAACAGGGAAAATAATAAATACAAAAT
66 GTACACCAAATAATAATATAATAAGTAGCAACAGGGAAAATAATAAATACAAAAT
111995261 CAATAATATTAGGAATACTATGGACAAAGAAAATACATTTATACTAATAATAGTAAAAGATGTAT
1 CAATAATATTAGGAATACTATGGACAAAGAAAATACATTTATACTAATAATAGTAAAAGATGTAT
*
111995326 GTACACCAAATAATAATATAATAAGTAGCAATAGGGAAAATAATAAATACAAAAT
66 GTACACCAAATAATAATATAATAAGTAGCAACAGGGAAAATAATAAATACAAAAT
111995381 CAATAATA
1 CAATAATA
111995389 CGACATACAC
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 126 1.00
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (120 bp):
CAATAATATTAGGAATACTATGGACAAAGAAAATACATTTATACTAATAATAGTAAAAGATGTAT
GTACACCAAATAATAATATAATAAGTAGCAACAGGGAAAATAATAAATACAAAAT
Found at i:111995813 original size:2 final size:2
Alignment explanation
Indices: 111995794--111995858 Score: 57
Period size: 2 Copynumber: 34.0 Consensus size: 2
111995784 TAATATTAAA
* * *
111995794 AT AT AT AC AT GAT A- AT AT AT AT A- AA AG AT AT AT AT AT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
111995835 AT AT AT AA AT AT AT A- AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
111995859 TAAAATATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
1 4 0.08
2 46 0.88
3 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (2 bp):
AT
Found at i:111995821 original size:49 final size:47
Alignment explanation
Indices: 111995759--111995858 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 47
111995749 ATTAAAAATC
111995759 ATATAGTATAAAGATATATA-ACTGATA-ATAT-TAAAATATATACATGATA
1 ATATAGTATAAAGATATATATA-T-ATATATATAT-AAATATATA-AT-ATA
111995808 ATATA-TATAAAAGATATATATATATATATATATAAATATATAATATA
1 ATATAGTAT-AAAGATATATATATATATATATATAAATATATAATATA
111995855 ATAT
1 ATAT
111995859 TAAAATATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
47 7 0.15
48 8 0.17
49 30 0.64
50 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (47 bp):
ATATAGTATAAAGATATATATATATATATATATAAATATATAATATA
Found at i:111995824 original size:25 final size:23
Alignment explanation
Indices: 111995759--111995873 Score: 91
Period size: 22 Copynumber: 4.9 Consensus size: 23
111995749 ATTAAAAATC
111995759 ATATAGTATAAAGATATATAACTGAT-
1 ATATA-TATAAA-ATATATAA-T-ATA
111995785 A-ATAT-TAAAATATATACATGATA
1 ATATATATAAAATATATA-AT-ATA
*
111995808 ATATATATAAAAGATAT-ATATA
1 ATATATATAAAATATATAATATA
111995830 TATATATATATAAATATATAATAT-
1 -ATATATATA-AAATATATAATATA
111995854 A-ATAT-TAAAATATAATAATA
1 ATATATATAAAATAT-ATAATA
111995874 CAACATAAAA
Statistics
Matches: 79, Mismatches: 2, Indels: 21
0.77 0.02 0.21
Matches are distributed among these distances:
20 6 0.08
21 8 0.10
22 18 0.23
23 18 0.23
24 12 0.15
25 16 0.20
26 1 0.01
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (23 bp):
ATATATATAAAATATATAATATA
Found at i:111995884 original size:21 final size:20
Alignment explanation
Indices: 111995841--111995884 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
111995831 ATATATATAT
* * *
111995841 AAATATATAATATAATATTA
1 AAATATATAATACAACATAA
111995861 AAATATAATAATACAACATAA
1 AAATAT-ATAATACAACATAA
111995882 AAA
1 AAA
111995885 AACATGATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
AAATATATAATACAACATAA
Found at i:111996082 original size:3 final size:3
Alignment explanation
Indices: 111996074--111996103 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
111996064 AAGCATAAAC
111996074 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
111996104 CATTGGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:111996226 original size:23 final size:22
Alignment explanation
Indices: 111996200--111996253 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
111996190 TGTATACACG
111996200 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
111996223 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
111996245 TAC-TAATAA
1 TACATAATAA
111996254 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:111996234 original size:3 final size:3
Alignment explanation
Indices: 111996203--111996273 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
111996193 ATACACGTAC
* * * *
111996203 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
111996250 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
111996274 CAAGGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:111996774 original size:11 final size:11
Alignment explanation
Indices: 111996742--111996776 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
111996732 AAAAAAAAGA
*
111996742 AGAGAGAAGGA
1 AGAGAGAAGGG
111996753 AGAGAGAAGGG
1 AGAGAGAAGGG
*
111996764 AGAGAGGAGGG
1 AGAGAGAAGGG
111996775 AG
1 AG
111996777 GGGAATCCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (11 bp):
AGAGAGAAGGG
Found at i:111998893 original size:29 final size:29
Alignment explanation
Indices: 111998853--111998955 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
111998843 GTTGAGAGAT
*
111998853 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
111998882 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
111998911 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
111998940 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
111998956 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:112000953 original size:13 final size:13
Alignment explanation
Indices: 112000935--112000962 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
112000925 GACAAAAGGG
112000935 CTTGGAAAATAGC
1 CTTGGAAAATAGC
112000948 CTTGGAAAATAGC
1 CTTGGAAAATAGC
112000961 CT
1 CT
112000963 CAAAGTTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (13 bp):
CTTGGAAAATAGC
Found at i:112003489 original size:37 final size:37
Alignment explanation
Indices: 112003439--112003515 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
112003429 AATAATAAAG
*
112003439 TTAGAGAAATGAGAAACATTCATAAATGAATATGGTT
1 TTAGAGAAATGAGAAACATTCATAAATGAATATGATT
112003476 TTAGAGAAATGAGAAACATTCATAAATGAATATGATT
1 TTAGAGAAATGAGAAACATTCATAAATGAATATGATT
112003513 TTA
1 TTA
112003516 TCACTATGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.31
Consensus pattern (37 bp):
TTAGAGAAATGAGAAACATTCATAAATGAATATGATT
Found at i:112003744 original size:16 final size:17
Alignment explanation
Indices: 112003710--112003744 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
112003700 TAGAATCGGG
*
112003710 TTGAGAAATTTATTTAA
1 TTGAGAAATTTAATTAA
112003727 TTGAGAAA-TTAATTAA
1 TTGAGAAATTTAATTAA
112003743 TT
1 TT
112003745 AATTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (17 bp):
TTGAGAAATTTAATTAA
Found at i:112004780 original size:2 final size:2
Alignment explanation
Indices: 112004773--112004805 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
112004763 GTAATATGAT
112004773 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
112004806 TTACGCATGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112005157 original size:210 final size:210
Alignment explanation
Indices: 112004795--112005174 Score: 699
Period size: 210 Copynumber: 1.8 Consensus size: 210
112004785 TATATATATA
112004795 TATATATATATTTACGCATGCATCACATTACAAAAACAAAATTTTAAATACTTATACCTAATAAA
1 TATATATATATTTACGCATGCATCACATTACAAAAACAAAATTTTAAATACTTATACCTAATAAA
*
112004860 ACATGTATCTCATTACAATAATTGTTATTTTCTAAATAACATATTATTTTATAATTTTATTTCTT
66 ACATGTATCTCATTACAATAATAGTTATTTTCTAAATAACATATTATTTTATAATTTTATTTCTT
112004925 ATTTAATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTACGCATTAGCAGAT
131 ATTTAATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTACGCATTAGCAGAT
112004990 TCACTAATATGATTT
196 TCACTAATATGATTT
*
112005005 TATATATATATTTACGCATGTATCACATTACAAAAACAAAATTTTAAATACTTATACCTAATAAA
1 TATATATATATTTACGCATGCATCACATTACAAAAACAAAATTTTAAATACTTATACCTAATAAA
* * *
112005070 GCATGTATCTCATTATAATAATAGTTATTTT-TCAAATAACATATTGTTTTATAATTTTATTTCT
66 ACATGTATCTCATTACAATAATAGTTATTTTCT-AAATAACATATTATTTTATAATTTTATTTCT
112005134 TATTTAATATTTTAATTTAATTTTAATAATGCATACTTTAT
130 TATTTAATATTTTAATTTAATTTTAATAATGCATACTTTAT
112005175 TTTTTTTAAA
Statistics
Matches: 164, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
209 1 0.01
210 163 0.99
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.44
Consensus pattern (210 bp):
TATATATATATTTACGCATGCATCACATTACAAAAACAAAATTTTAAATACTTATACCTAATAAA
ACATGTATCTCATTACAATAATAGTTATTTTCTAAATAACATATTATTTTATAATTTTATTTCTT
ATTTAATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTACGCATTAGCAGAT
TCACTAATATGATTT
Found at i:112008590 original size:24 final size:24
Alignment explanation
Indices: 112008557--112008612 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
112008547 AACCCTCTAT
*
112008557 TTAAATTTCTACCTATTTTAGCCA
1 TTAAACTTCTACCTATTTTAGCCA
*
112008581 TTAAACTTCTGCCTATTTTAGCCA
1 TTAAACTTCTACCTATTTTAGCCA
112008605 TTAAACTT
1 TTAAACTT
112008613 ACATTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (24 bp):
TTAAACTTCTACCTATTTTAGCCA
Found at i:112008769 original size:19 final size:19
Alignment explanation
Indices: 112008745--112008796 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
112008735 TTTTCTTATG
112008745 TTTTTATATATTTTAATAA
1 TTTTTATATATTTTAATAA
*
112008764 TTTTTA-AT-TTTAAAAATAA
1 TTTTTATATATTT--TAATAA
*
112008783 TTTATATATATTTT
1 TTTTTATATATTTT
112008797 GAATTTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
17 3 0.12
18 2 0.08
19 16 0.62
20 2 0.08
21 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTATATATTTTAATAA
Found at i:112009283 original size:15 final size:14
Alignment explanation
Indices: 112009263--112009295 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
112009253 TATTTTTAAT
112009263 GAAAAAGTAAAAAAA
1 GAAAAAG-AAAAAAA
112009278 GAAAAAGAAAAAAA
1 GAAAAAGAAAAAAA
112009292 -AAAA
1 GAAAA
112009296 GGTCATAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 7 0.39
15 7 0.39
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (14 bp):
GAAAAAGAAAAAAA
Found at i:112011313 original size:23 final size:24
Alignment explanation
Indices: 112011281--112011333 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
112011271 GGCCTTTTTA
* *
112011281 ATTTTGTTAGG-TTTAGGGTTAGG
1 ATTTTGTTAGGATTAAGAGTTAGG
*
112011304 ATTTTTTTAGGAATTAAGAGTTAGG
1 ATTTTGTTAGG-ATTAAGAGTTAGG
112011329 ATTTT
1 ATTTT
112011334 AGGAGTGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 10 0.40
25 15 0.60
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (24 bp):
ATTTTGTTAGGATTAAGAGTTAGG
Found at i:112016111 original size:21 final size:20
Alignment explanation
Indices: 112016083--112016123 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
112016073 GTCAATAACT
112016083 AAAAGTTCAC-ACAAACAGAC
1 AAAAGTTC-CGACAAACAGAC
112016103 AAAATGTTCCGACAAACAGAC
1 AAAA-GTTCCGACAAACAGAC
112016124 GTATATTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.51, C:0.24, G:0.12, T:0.12
Consensus pattern (20 bp):
AAAAGTTCCGACAAACAGAC
Found at i:112016837 original size:21 final size:21
Alignment explanation
Indices: 112016788--112016842 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
112016778 GTGGAGGCCT
*
112016788 ACATGCCTATGTGGAGAAGAC
1 ACATGCCCATGTGGAGAAGAC
* * *
112016809 AAACGCCCATGTGGAGGAGAC
1 ACATGCCCATGTGGAGAAGAC
*
112016830 ACATGCCCGTGTG
1 ACATGCCCATGTG
112016843 ACCAAGTTAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.24, G:0.31, T:0.16
Consensus pattern (21 bp):
ACATGCCCATGTGGAGAAGAC
Found at i:112018070 original size:28 final size:28
Alignment explanation
Indices: 112018029--112018107 Score: 88
Period size: 28 Copynumber: 2.9 Consensus size: 28
112018019 GTATCTAGCT
* * *
112018029 CATTAAGCCCAATCATATTCATATGGCC
1 CATTAGGCCAAATCACATTCATATGGCC
*
112018057 CATTAGGCCAAATCACATTTATATGGCC
1 CATTAGGCCAAATCACATTCATATGGCC
* * *
112018085 CATTAGACC-CAGCACATTCATAT
1 CATTAGGCCAAATCACATTCATAT
112018108 TCATGCTCAC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 11 0.26
28 32 0.74
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (28 bp):
CATTAGGCCAAATCACATTCATATGGCC
Found at i:112019712 original size:15 final size:17
Alignment explanation
Indices: 112019692--112019726 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
112019682 ACACATGGCC
112019692 GTGTGG-AC-TGACCGT
1 GTGTGGCACATGACCGT
112019707 GTGTGGCACATGACCGT
1 GTGTGGCACATGACCGT
112019724 GTG
1 GTG
112019727 GCCATCCGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 2 0.11
17 10 0.56
ACGTcount: A:0.14, C:0.20, G:0.40, T:0.26
Consensus pattern (17 bp):
GTGTGGCACATGACCGT
Found at i:112019727 original size:15 final size:15
Alignment explanation
Indices: 112019683--112019739 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
112019673 TTCCTAATTA
*
112019683 CACATGGCCGTGTGG
1 CACATGACCGTGTGG
112019698 -AC-TGACCGTGTGTGG
1 CACATGACC--GTGTGG
112019713 CACATGACCGTGTGG
1 CACATGACCGTGTGG
112019728 C-CAT--CCGTGTGG
1 CACATGACCGTGTGG
112019740 TCACGAAACC
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
12 8 0.22
13 4 0.11
14 5 0.14
15 13 0.35
16 2 0.05
17 5 0.14
ACGTcount: A:0.14, C:0.26, G:0.37, T:0.23
Consensus pattern (15 bp):
CACATGACCGTGTGG
Found at i:112021987 original size:9 final size:9
Alignment explanation
Indices: 112021975--112022031 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
112021965 AAAAATTGTA
112021975 AGAATTGAG
1 AGAATTGAG
*
112021984 AGAAGTGAG
1 AGAATTGAG
*
112021993 AGAGTTGAG
1 AGAATTGAG
*
112022002 AGAACTGAG
1 AGAATTGAG
*
112022011 AG-TTTAGAG
1 AGAATT-GAG
*
112022020 AGAATAGAG
1 AGAATTGAG
112022029 AGA
1 AGA
112022032 GTTAGATTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
8 1 0.03
9 35 0.95
10 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.37, T:0.18
Consensus pattern (9 bp):
AGAATTGAG
Found at i:112022002 original size:18 final size:17
Alignment explanation
Indices: 112021979--112022034 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 17
112021969 ATTGTAAGAA
112021979 TTGAGAGAAGTGAGAGAG
1 TTGAGAGAA-TGAGAGAG
*
112021997 TTGAGAGAACTGAGAG-T
1 TTGAGAGAA-TGAGAGAG
112022014 TTAGAGAGAATAGAGAGAG
1 TT-GAGAGAAT-GAGAGAG
112022033 TT
1 TT
112022035 AGATTTGAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.09
18 27 0.84
19 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.38, T:0.21
Consensus pattern (17 bp):
TTGAGAGAATGAGAGAG
Found at i:112028294 original size:18 final size:18
Alignment explanation
Indices: 112028271--112028310 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
112028261 CCCCACACTT
112028271 AAGCGATTGATTGTCCTC
1 AAGCGATTGATTGTCCTC
*
112028289 AAGCGATTGCTTGTCCTC
1 AAGCGATTGATTGTCCTC
112028307 AAGC
1 AAGC
112028311 AAAATCCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (18 bp):
AAGCGATTGATTGTCCTC
Found at i:112034062 original size:28 final size:28
Alignment explanation
Indices: 112034030--112034090 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
112034020 GTTGAACTCA
112034030 ATGATTGAAAAAATCGAATGAATATAGC
1 ATGATTGAAAAAATCGAATGAATATAGC
112034058 ATGATTGAAAAAATCGAATGAATATAGC
1 ATGATTGAAAAAATCGAATGAATATAGC
112034086 ATGAT
1 ATGAT
112034091 GTGTTTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26
Consensus pattern (28 bp):
ATGATTGAAAAAATCGAATGAATATAGC
Found at i:112034625 original size:38 final size:38
Alignment explanation
Indices: 112034565--112034642 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
112034555 GGTCATTTGG
*
112034565 TGGAAAATTGAGAGTGAGTGATAGGTTTGAGTTATGTA
1 TGGAAAATTGAGAGTGAATGATAGGTTTGAGTTATGTA
*
112034603 TGGATAATTGAGAGTGAATGATAGGTTTGAGTTATGTA
1 TGGAAAATTGAGAGTGAATGATAGGTTTGAGTTATGTA
112034641 TG
1 TG
112034643 TACTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (38 bp):
TGGAAAATTGAGAGTGAATGATAGGTTTGAGTTATGTA
Found at i:112038308 original size:19 final size:20
Alignment explanation
Indices: 112038279--112038316 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
112038269 CAATGATTCA
*
112038279 ATGGACATGAAACTCTTGAC
1 ATGGACATGAAAATCTTGAC
112038299 ATGG-CATGAAAATCTTGA
1 ATGGACATGAAAATCTTGA
112038317 GATGATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (20 bp):
ATGGACATGAAAATCTTGAC
Found at i:112038326 original size:19 final size:19
Alignment explanation
Indices: 112038282--112038326 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
112038272 TGATTCAATG
*
112038282 GACATGAAACTCTTGACAT
1 GACATGAAAATCTTGACAT
* *
112038301 GGCATGAAAATCTTGAGAT
1 GACATGAAAATCTTGACAT
*
112038320 GATATGA
1 GACATGA
112038327 TAATGACTTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (19 bp):
GACATGAAAATCTTGACAT
Found at i:112043851 original size:18 final size:18
Alignment explanation
Indices: 112043828--112043894 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 18
112043818 CACATTTCAT
112043828 GGCTAAATTACCAGTCCA
1 GGCTAAATTACCAGTCCA
* *
112043846 GGCTAAATTCCCCATATCTC-
1 GGCTAAATT-ACCA-GTC-CA
112043866 GGATCTAAATTACCAGTCCA
1 GG--CTAAATTACCAGTCCA
*
112043886 TGCTAAATT
1 GGCTAAATT
112043895 CAGACCCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
18 16 0.42
19 4 0.11
20 7 0.18
21 4 0.11
22 7 0.18
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.28
Consensus pattern (18 bp):
GGCTAAATTACCAGTCCA
Found at i:112047781 original size:20 final size:20
Alignment explanation
Indices: 112047756--112047800 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
112047746 AGGGACTAAA
*
112047756 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
* *
112047776 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTATAAAATTTG
112047796 ATGAA
1 ATGAA
112047801 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:112050981 original size:20 final size:18
Alignment explanation
Indices: 112050956--112050994 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
112050946 GAAGTTTATA
*
112050956 AAATAAGTTGTAAATGTGTG
1 AAATAA-TTGAAAAT-TGTG
112050976 AAATAATTGAAAATTGTG
1 AAATAATTGAAAATTGTG
112050994 A
1 A
112050995 GGTTCTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.33
Consensus pattern (18 bp):
AAATAATTGAAAATTGTG
Found at i:112051530 original size:48 final size:48
Alignment explanation
Indices: 112051459--112051636 Score: 200
Period size: 48 Copynumber: 3.7 Consensus size: 48
112051449 TATGTGTGCT
* *
112051459 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCC
* * * * * *
112051507 AGTGTAAGATCATG-CTTAGGACATGGCATTGG-CA-TTGATATGTGTGCT
1 AGTGTAAGACCATGTC-TAGGACATGGCATCGGCCACAT--TATGAGAGCC
** *
112051555 AGTGTAAGACCATGTCTAGGACATGTTATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCC
*
112051603 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCC
112051637 CATGTAACTC
Statistics
Matches: 105, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
46 1 0.01
47 2 0.02
48 98 0.93
49 3 0.03
50 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:112051610 original size:96 final size:96
Alignment explanation
Indices: 112051446--112051631 Score: 293
Period size: 96 Copynumber: 1.9 Consensus size: 96
112051436 GACAATTGGG
* *
112051446 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
112051511 TAAGATCATG-CTTAGGACATGGCATTGGCAT
66 TAAGACCATGTC-TAGGACATGGCATTGGCAT
** *
112051542 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGTTATTGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
112051607 TAAGACCATGTCTGGGACATGGCAT
66 TAAGACCATGTCTAGGACATGGCAT
112051632 CGGCCCATGT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 81 0.99
97 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
TAAGACCATGTCTAGGACATGGCATTGGCAT
Found at i:112054410 original size:17 final size:18
Alignment explanation
Indices: 112054377--112054411 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
112054367 TAACTTAGCT
*
112054377 AGAATTTGAATAATAGAA
1 AGAATATGAATAATAGAA
112054395 AGAATATGAA-AATAGAA
1 AGAATATGAATAATAGAA
112054412 TGTTATCGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (18 bp):
AGAATATGAATAATAGAA
Found at i:112057529 original size:40 final size:39
Alignment explanation
Indices: 112057484--112057613 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
112057474 CGGAATACAA
112057484 CCGGATATAACCACGT-GCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCA-GAATGCCTTCGGGTCTTAGC
* * *
112057524 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCA-GAATGCCTTCGGGTCTTAGC
* * * *
112057564 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCAGAA-TGCCTTCGGGTCTTAGC
112057604 CCGGATATAA
1 CCGGATATAA
112057614 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTAGCAGAATGCCTTCGGGTCTTAGC
Found at i:112062899 original size:27 final size:27
Alignment explanation
Indices: 112062836--112062889 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
112062826 TGTCAAGTGA
**
112062836 AATTGAATGGCAAATTATCATTACATG
1 AATTGAATGTTAAATTATCATTACATG
112062863 AATTGAATGTTAAATTA-CTATTACATG
1 AATTGAATGTTAAATTATC-ATTACATG
112062890 GGTTGTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (27 bp):
AATTGAATGTTAAATTATCATTACATG
Found at i:112074625 original size:26 final size:26
Alignment explanation
Indices: 112074596--112074676 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
112074586 GTCATCATGT
112074596 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGCAGGCTACTAC
*
112074622 GTGTATTA--AATGGTG-AGG-T-C-AC
1 GTGTAGTACTAA--GTGCAGGCTACTAC
*
112074644 GTGTGTAGTACTAAGTGCAAGCTACTAC
1 --GTGTAGTACTAAGTGCAGGCTACTAC
112074672 GTGTA
1 GTGTA
112074677 CCAGACTGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 20
0.65 0.05 0.31
Matches are distributed among these distances:
22 2 0.05
23 1 0.02
24 13 0.31
25 5 0.12
26 18 0.43
27 1 0.02
28 2 0.05
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
GTGTAGTACTAAGTGCAGGCTACTAC
Found at i:112074669 original size:50 final size:49
Alignment explanation
Indices: 112074544--112074719 Score: 178
Period size: 50 Copynumber: 3.5 Consensus size: 49
112074534 TGAGGTCGCA
* * * *
112074544 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTCA--TCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AGAA-TGT-AGGTCACG
**
112074595 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTA-AATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAT-GT-AGGTCACG
* * * * *
112074645 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAATGTAGGTCACG
112074694 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
112074720 TGCATACCAG
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 5 0.05
49 31 0.29
50 38 0.36
51 32 0.30
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAATGTAGGTCACG
Found at i:112074728 original size:49 final size:49
Alignment explanation
Indices: 112074537--112074730 Score: 167
Period size: 49 Copynumber: 3.9 Consensus size: 49
112074527 TCTATTGTGA
* * *
112074537 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTG-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CC--AGACTGTT
** ** * ** * *
112074588 CATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTA-AATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACT-GT-T
* * *
112074638 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACTGTT
* * *
112074687 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
112074731 TAGTTTCGGC
Statistics
Matches: 114, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
47 2 0.02
48 2 0.02
49 38 0.33
50 38 0.33
51 34 0.30
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACTGTT
Done.