Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 365 of 438
Found at i:113927780 original size:11 final size:12
Alignment explanation
Indices: 113927597--113927847 Score: 95
Period size: 12 Copynumber: 21.2 Consensus size: 12
113927587 TAATTGATTG
*
113927597 TTATTATTATTA
1 TTATTATTACTA
*
113927609 TTATT-TCTATTA
1 TTATTAT-TACTA
* *
113927621 TTATTATTCCTCT
1 TTATTATTACT-A
*
113927634 TTATTATTATTA
1 TTATTATTACTA
*
113927646 TCTATTATCGA-TA
1 T-TATTAT-TACTA
*
113927659 TTATTATTATTA
1 TTATTATTACTA
113927671 TTACTGTTATTACTA
1 TTA---TTATTACTA
113927686 TT-TT-TT--TA
1 TTATTATTACTA
* *
113927694 TTTTTATTGCTA
1 TTATTATTACTA
* *
113927706 TTAATATTAGTA
1 TTATTATTACTA
113927718 TTATTA-T-C-A
1 TTATTATTACTA
*
113927727 TT-TTATTTC-A
1 TTATTATTACTA
*
113927737 TTATCATTA-TCA
1 TTATTATTACT-A
*
113927749 TTTTTA-TA--A
1 TTATTATTACTA
113927758 TTATTATTACTA
1 TTATTATTACTA
113927770 TTATT-TTACTA
1 TTATTATTACTA
113927781 TTATTATTTAACATA
1 TTATTA-TT-AC-TA
* *
113927796 CTATTATTACCA
1 TTATTATTACTA
* *
113927808 TT-TTGTTATTA
1 TTATTATTACTA
*
113927819 TTATTACTACTA
1 TTATTATTACTA
113927831 TTGTATTATTACTA
1 -T-TATTATTACTA
113927845 TTA
1 TTA
113927848 GTATATTTTC
Statistics
Matches: 181, Mismatches: 30, Indels: 56
0.68 0.11 0.21
Matches are distributed among these distances:
8 7 0.04
9 12 0.07
10 10 0.06
11 30 0.17
12 65 0.36
13 25 0.14
14 15 0.08
15 17 0.09
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:113927787 original size:14 final size:15
Alignment explanation
Indices: 113927765--113927803 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
113927755 TAATTATTAT
*
113927765 TACTATTATTTTAC-
1 TACTATTATTTAACA
*
113927779 TATTATTATTTAACA
1 TACTATTATTTAACA
113927794 TACTATTATT
1 TACTATTATT
113927804 ACCATTTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (15 bp):
TACTATTATTTAACA
Found at i:113927804 original size:3 final size:3
Alignment explanation
Indices: 113927597--113927788 Score: 119
Period size: 3 Copynumber: 64.7 Consensus size: 3
113927587 TAATTGATTG
*
113927597 TTA TTA TTA TTA TTA TT- TCTA TTA TTA TTA TTCC TCT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT-A T-TA TTA TTA TTA
* * * *
113927643 TTA TCTA TTA TCGA -TA TTA TTA TTA TTA TTA CTG TTA TTA CTA TT-
1 TTA T-TA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
113927688 TTT TTA TTT TTA TTG CTA TTA ATA TTA GTA TTA TTA TCA TT- TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
113927734 TCA TTA TCA TTA TCA TTT TTA TAA TTA TTA TTA CTA TTA TT- TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
113927781 TTA TTA TT
1 TTA TTA TT
113927789 TAACATACTA
Statistics
Matches: 141, Mismatches: 36, Indels: 24
0.70 0.18 0.12
Matches are distributed among these distances:
2 10 0.07
3 124 0.88
4 6 0.04
5 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:113927837 original size:14 final size:15
Alignment explanation
Indices: 113927814--113927851 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
113927804 ACCATTTTGT
*
113927814 TATTATTATTACTAC
1 TATTAGTATTACTAC
*
113927829 TATT-GTATTATTAC
1 TATTAGTATTACTAC
113927843 TATTAGTAT
1 TATTAGTAT
113927852 ATTTTCATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (15 bp):
TATTAGTATTACTAC
Found at i:113928049 original size:3 final size:3
Alignment explanation
Indices: 113928043--113928067 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
113928033 ATTATTATTA
113928043 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
113928068 CATATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:113930653 original size:19 final size:20
Alignment explanation
Indices: 113930612--113930660 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
113930602 GCCTCTTTTT
**
113930612 GCATT-CATTTCATTCATTT
1 GCATTACATTTCATTCATAG
113930631 GCATTACATTTCA-TCATAG
1 GCATTACATTTCATTCATAG
*
113930650 GCATTAAATTT
1 GCATTACATTT
113930661 TACGAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (20 bp):
GCATTACATTTCATTCATAG
Found at i:113938980 original size:45 final size:44
Alignment explanation
Indices: 113938850--113939867 Score: 378
Period size: 41 Copynumber: 22.9 Consensus size: 44
113938840 GCTATAAATC
* * *
113938850 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * * ** *
113938893 CACTAGTCTTATCTCCCTGAAGTTGTAGTAGAGTAGACTGAAGAT
1 -ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* *
113938938 AGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATGAAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG-A---A-G-AT
* ** * * **
113938989 AAATAGATCTTATCTATCTGAAGCTGCA---G--CAGAGTAGATCAT
1 ACA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAACAGA-TTGAAGAT
* * * * *
113939031 AGCGAA-CTTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTT
1 A-CAAATC-TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * *
113939076 A-AAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * *
113939119 AGCTAATATTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAGCTAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT
* * * * *
113939166 AAATCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGA-TCAA-A-
1 --A-CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * *
113939212 ACAAACCTTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * * *
113939256 A-AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* *
113939299 AGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT
* * ****
113939346 AAATCACAGATCTTATCTCTCTGAAGTTGCAATACTGCAGATT-AA-A-
1 --A-CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* ** * ** *
113939392 ACAGATCTTATCTATCTGAAGTTGCAATGGAGTAGA-TCAA-A-
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * * * *
113939433 ACAAACCTTATCTCACTAAAGTTGCAGTGGAGCAGACTAAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * **
113939477 AGCGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAGCTAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT
* ****
113939524 AAATCACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATT-AA-A-
1 --A-CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * ****
113939570 ACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATT-AA-A-
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * ** *
113939611 ACAGATCTTATCTCTCTGAAGTTGCAATGGAGTAGA-TCAA-A-
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * * *
113939652 ACAAACCTTATCTCACTAAAGTTGCAGT-GAAGCAGACTAAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTGAAGAT
* * * *
113939696 AGCGAATCTTATTTTCCTGAAGTTGTAGTGGAACAGATTGAAGCTAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT
* *
113939743 AAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGG-GCAGATT-AA-A-
1 --A-CA-A-ATCTTATCTCCCTGAAGTTGCAGT-GGAACAGATTGAAGAT
* ** * * ** *
113939789 ACAGATCTTATCTCTTTGAAGTTGTAGTAGAGTAGA-TCAA-A-
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
* * * *
113939830 ACAAACCTTATCTCACTAAAGTTGCAGTGGAGCAGATT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT
113939868 AAAGCAACAA
Statistics
Matches: 740, Mismatches: 168, Indels: 134
0.71 0.16 0.13
Matches are distributed among these distances:
40 7 0.01
41 254 0.34
42 15 0.02
43 77 0.10
44 44 0.06
45 161 0.22
46 7 0.01
47 17 0.02
48 2 0.00
49 10 0.01
50 15 0.02
51 112 0.15
52 19 0.03
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT
Found at i:113939087 original size:43 final size:43
Alignment explanation
Indices: 113939039--113939341 Score: 191
Period size: 43 Copynumber: 6.8 Consensus size: 43
113939029 ATAGCGAACT
* *
113939039 TTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTAAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTAAAGTC
** * * *
113939082 TTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCTAA-TA
1 TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTA---AAGTC
* * *
113939127 TTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAGCTATAAATCACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAG-T-T--A--A-AG-TC
* * * * * * *** *
113939178 TTATCTCTCTGAAGTTACAGTAGAGCA-GATCAAAACAAA-CC
1 TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTAAAGTC
*
113939219 TTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTTAAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTAAAGTC
* * ** * *
113939262 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAGCGAA-TC
1 TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTA---AAGTC
* *
113939307 TTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAG
113939342 CTATAAATCA
Statistics
Matches: 196, Mismatches: 49, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
41 23 0.12
42 7 0.04
43 65 0.33
44 1 0.01
45 64 0.33
46 5 0.03
47 1 0.01
48 1 0.01
49 2 0.01
50 3 0.02
51 24 0.12
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTAAAGTC
Found at i:113939160 original size:88 final size:88
Alignment explanation
Indices: 113939039--113939519 Score: 379
Period size: 88 Copynumber: 5.4 Consensus size: 88
113939029 ATAGCGAACT
* * *
113939039 TTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTG
* * *
113939104 GAACAGACTAAAGATAGCTAATA
66 GAGCAGACTAAAGATAGCAAATC
* * *
113939127 TTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-T-T--A--A-AG-TCTTATCTCCCTGAAG
* * * *
113939192 TTACAGTAGAGCAGA-TCAA-A-A-CAAACC
58 TTGCAGTGGAGCAGACTAAAGATAGCAAATC
* * *
113939219 TTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTTAAAGTCTTATCTCCCTAAAGTTGCAGTG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTG
*
113939284 GAGCAGACTAAAGATAGCGAATC
66 GAGCAGACTAAAGATAGCAAATC
* *
113939307 TTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-T-T--A--A-AG-TCTTATCTCCCTGAAG
* *** * *
113939372 TTGCAATACTGCAGA-TTAA-A-A-CAGATC
58 TTGCAGTGGAGCAGACTAAAGATAGCAAATC
** * ** * *** * * *
113939399 TTATCTATCTGAAGTTGCAATGGAGTAGA-TCAAAACAAA-CCTTATCTCACTAAAGTTGCAGTG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTG
*
113939462 GAGCAGACTAAAGATAGCGAATC
66 GAGCAGACTAAAGATAGCAAATC
* **
113939485 TTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG
113939520 CTATAAATCA
Statistics
Matches: 305, Mismatches: 63, Indels: 51
0.73 0.15 0.12
Matches are distributed among these distances:
82 24 0.08
83 3 0.01
84 29 0.10
85 7 0.02
86 30 0.10
87 5 0.02
88 67 0.22
89 2 0.01
90 3 0.01
91 4 0.01
92 63 0.21
93 2 0.01
94 4 0.01
95 10 0.03
96 52 0.17
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (88 bp):
TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTG
GAGCAGACTAAAGATAGCAAATC
Found at i:113939279 original size:180 final size:180
Alignment explanation
Indices: 113938850--113939595 Score: 974
Period size: 180 Copynumber: 4.1 Consensus size: 180
113938840 GCTATAAATC
* * *
113938850 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTGAAG
1 ACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCA-AAGTCTTATCTCCCTAAAG
* * * * * *
113938915 TTGTAGTAGAGTAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAA
65 TTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAA
* * * * * * * * *
113938980 GCTATGAATAAATAGATCTTATCTATCTGAAGCTGCAGCAGAGTAGATCATA
130 GCTATAAAT-CACAGATCTTATCTCTCTGAAGTTGCAGTACAGCAGATCAAA
* * * * * * *
113939032 GCGAACTTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGT
1 ACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCAAAGTCTTATCTCCCTAAAGT
* * * *
113939097 TGCAGTGGAACAGACTAAAGATAGCTAATATTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAG
66 TGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
* *
113939162 CTATAAATCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCAAA
131 CTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTACAGCAGATCAAA
* *
113939212 ACAAACCTTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTTAAAGTCTTATCTCCCTAAAGT
1 ACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCAAAGTCTTATCTCCCTAAAGT
113939277 TGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
66 TGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
* * *
113939342 CTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATACTGCAGATTAAA
131 CTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTACAGCAGATCAAA
* * ** * * * ** * *
113939392 ACAGATCTTATCTATCTGAAGTTGCAATGGAGTA-GATCAAAACAAA-CCTTATCTCACTAAAGT
1 ACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCAAAGTCTTATCTCCCTAAAGT
**
113939455 TGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAG
66 TGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
* *
113939520 CTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATTAAA
131 CTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTACAGCAGATCAAA
* * *
113939570 ACAGATCTTATCTCTCTGAAGTTGCA
1 ACAAACCTTATCTCCCTGAAGTTGCA
113939596 GTACTGCAGA
Statistics
Matches: 507, Mismatches: 57, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
178 152 0.30
179 7 0.01
180 226 0.45
181 82 0.16
182 40 0.08
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (180 bp):
ACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCAAAGTCTTATCTCCCTAAAGT
TGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
CTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTACAGCAGATCAAA
Found at i:113939521 original size:358 final size:362
Alignment explanation
Indices: 113938850--113939595 Score: 989
Period size: 358 Copynumber: 2.1 Consensus size: 362
113938840 GCTATAAATC
* * * *
113938850 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTGAAG
1 ACAAACCTTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTCACAAGTCTTATCTCCCTAAAG
* * *
113938915 TTGTAGTAGAGTAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAA
66 TTGCAGTAGAGCAGACTAAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAA
* * * * * * *
113938980 GCTATGAATAAATAGATCTTATCTATCTGAAGCTGCAGCAGAGTAGATCATAGCGAACTTTATCT
131 GCTATAAATAAACAGATCTTATCTATCTGAAGCTGCAACACAGCAGATCAAAACGAACTTTATCT
* * * * * *** * * *
113939045 CCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAG
196 ACCTGAAGTTGCAATGGAGCAGGATCAAAACAAAGCCTTATCTCACTAAAGTTGCAGTGGAACAG
*
113939110 ACTAAAGATAGCTAATATTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAGCTATAAATCACAG
261 ACTAAAGATAGCGAATATTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAGCTATAAATCACAG
*
113939175 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCAAA
326 ATCTTATCTCTCTGAAGTTACAGTACAGCAGATCAAA
*
113939212 ACAAACCTTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTTA-AAGTCTTATCTCCCTAAAG
1 ACAAACCTTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTCACAAGTCTTATCTCCCTAAAG
* * *
113939276 TTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAA
66 TTGCAGTAGAGCAGACTAAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAA
* * * * * * *
113939341 GCTATAAAT-CACAGATCTTATCTCTCTGAAGTTGCAATACTGCAGATTAAAACAGATC-TTATC
131 GCTATAAATAAACAGATCTTATCTATCTGAAGCTGCAACACAGCAGATCAAAAC-GAACTTTATC
* * *
113939404 TATCTGAAGTTGCAATGGAGTA-GATCAAAACAAA-CCTTATCTCACTAAAGTTGCAGTGGAGCA
195 TACCTGAAGTTGCAATGGAGCAGGATCAAAACAAAGCCTTATCTCACTAAAGTTGCAGTGGAACA
* ** *
113939467 GACTAAAGATAGCGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACA
260 GACTAAAGATAGCGAATATTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAGCTATAAATCACA
* * *
113939532 GATCTTATCTCTCTGAAGTTGCAGTACTGCAGATTAAA
325 GATCTTATCTCTCTGAAGTTACAGTACAGCAGATCAAA
* * *
113939570 ACAGATCTTATCTCTCTGAAGTTGCA
1 ACAAACCTTATCTCCCTGAAGTTGCA
113939596 GTACTGCAGA
Statistics
Matches: 332, Mismatches: 51, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
358 142 0.43
359 7 0.02
360 54 0.16
361 87 0.26
362 42 0.13
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (362 bp):
ACAAACCTTATCTCCCTGAAGTTGCAATGGAACAGGTTGAAGTCACAAGTCTTATCTCCCTAAAG
TTGCAGTAGAGCAGACTAAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAA
GCTATAAATAAACAGATCTTATCTATCTGAAGCTGCAACACAGCAGATCAAAACGAACTTTATCT
ACCTGAAGTTGCAATGGAGCAGGATCAAAACAAAGCCTTATCTCACTAAAGTTGCAGTGGAACAG
ACTAAAGATAGCGAATATTATTTCCCTGAAGTTGCAGTAGAACAGATTGAAGCTATAAATCACAG
ATCTTATCTCTCTGAAGTTACAGTACAGCAGATCAAA
Found at i:113939622 original size:219 final size:219
Alignment explanation
Indices: 113939351--113939866 Score: 854
Period size: 219 Copynumber: 2.4 Consensus size: 219
113939341 GCTATAAATC
*
113939351 ACAGATCTTATCTCTCTGAAGTTGCAATACTGCAGATTAAAACAGATCTTATCTATCTGAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATTAAAACAGATCTTATCTATCTGAAGTTG
*
113939416 CAATGGAGTAGATCAAAACAAACCTTATCTCACTAAAGTTGCAGTGGAGCAGACTAAAGATAGCG
66 CAATGGAGTAGATCAAAACAAACCTTATCTCACTAAAGTTGCAGTGAAGCAGACTAAAGATAGCG
*
113939481 AATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCT
131 AATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCT
*
113939546 GAAGTTGCAGTACTGCAGATTAAA
196 GAAGTTGCAGTACGGCAGATTAAA
*
113939570 ACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATTAAAACAGATCTTATCTCTCTGAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATTAAAACAGATCTTATCTATCTGAAGTTG
113939635 CAATGGAGTAGATCAAAACAAACCTTATCTCACTAAAGTTGCAGTGAAGCAGACTAAAGATAGCG
66 CAATGGAGTAGATCAAAACAAACCTTATCTCACTAAAGTTGCAGTGAAGCAGACTAAAGATAGCG
*
113939700 AATCTTATTTTCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCT
131 AATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCT
*
113939765 GAAGTTGCAGTAGGGCAGATTAAA
196 GAAGTTGCAGTACGGCAGATTAAA
* * ** * * * * *
113939789 ACAGATCTTATCTCTTTGAAGTTGTAGTAGAGTAGATCAAAACAAACCTTATCTCA-CTAAAGTT
1 ACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATTAAAACAGATCTTATCT-ATCTGAAGTT
* *
113939853 GCAGTGGAGCAGAT
65 GCAATGGAGTAGAT
113939867 TAAAGCAACA
Statistics
Matches: 277, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
219 277 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (219 bp):
ACAGATCTTATCTCTCTGAAGTTGCAGTACTGCAGATTAAAACAGATCTTATCTATCTGAAGTTG
CAATGGAGTAGATCAAAACAAACCTTATCTCACTAAAGTTGCAGTGAAGCAGACTAAAGATAGCG
AATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCT
GAAGTTGCAGTACGGCAGATTAAA
Found at i:113941406 original size:11 final size:12
Alignment explanation
Indices: 113941223--113941473 Score: 95
Period size: 12 Copynumber: 21.3 Consensus size: 12
113941213 AAATTAATTG
*
113941223 ATTATTATTATT
1 ATTATTATTACT
* *
113941235 TTTATTACTACT
1 ATTATTATTACT
*
113941247 ATTATTATTCCT
1 ATTATTATTACT
* *
113941259 CTTTATTATTATT
1 -ATTATTATTACT
*
113941272 ATCTATTATCGATATT
1 AT-TATTAT---TACT
*
113941288 ATTATTATTATT
1 ATTATTATTACT
*
113941300 ACTATTATTACT
1 ATTATTATTACT
*
113941312 GTT-TT-TTA-T
1 ATTATTATTACT
*
113941321 -TT-TTATTGCT
1 ATTATTATTACT
* *
113941331 ATTAATATTAGT
1 ATTATTATTACT
113941343 ATTATTA-T-C-
1 ATTATTATTACT
*
113941352 ATT-TTATTTC-
1 ATTATTATTACT
*
113941362 ATTATCATTA-T
1 ATTATTATTACT
113941373 CATT-TT-TGTA--
1 -ATTATTAT-TACT
113941383 ATTATTATTACT
1 ATTATTATTACT
113941395 ATTATT-TTACT
1 ATTATTATTACT
113941406 ATTATTATTTAACAT
1 ATTATTA-TT-AC-T
* *
113941421 ACTATTATTACC
1 ATTATTATTACT
* *
113941433 ATT-TTGTTATT
1 ATTATTATTACT
*
113941444 ATTATTACTACT
1 ATTATTATTACT
113941456 ATTGTATTATTACT
1 A-T-TATTATTACT
113941470 ATTA
1 ATTA
113941474 ATATATTTTC
Statistics
Matches: 180, Mismatches: 33, Indels: 52
0.68 0.12 0.20
Matches are distributed among these distances:
8 7 0.04
9 10 0.06
10 13 0.07
11 32 0.18
12 64 0.36
13 21 0.12
14 14 0.08
15 13 0.07
16 6 0.03
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.59
Consensus pattern (12 bp):
ATTATTATTACT
Found at i:113941413 original size:14 final size:15
Alignment explanation
Indices: 113941391--113941429 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
113941381 TAATTATTAT
*
113941391 TACTATTATTTTAC-
1 TACTATTATTTAACA
*
113941405 TATTATTATTTAACA
1 TACTATTATTTAACA
113941420 TACTATTATT
1 TACTATTATT
113941430 ACCATTTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (15 bp):
TACTATTATTTAACA
Found at i:113941430 original size:3 final size:3
Alignment explanation
Indices: 113941223--113941414 Score: 101
Period size: 3 Copynumber: 65.0 Consensus size: 3
113941213 AAATTAATTG
* * * *
113941223 ATT ATT ATT ATT TTT ATT ACT ACT ATT ATT ATT CCTCT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -AT-T ATT ATT ATT
* * * *
113941269 ATT ATCT ATT ATCG A-T ATT ATT ATT ATT ATT ACT ATT ATT ACT GTT
1 ATT AT-T ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * *
113941315 -TT -TT ATT TTT ATT GCT ATT AAT ATT AGT ATT ATT ATC ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
113941360 -TC ATT ATC ATT ATC ATT TTT GTA ATT ATT ATT ACT ATT ATT -TT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
113941406 ATT ATT ATT
1 ATT ATT ATT
113941415 TAACATACTA
Statistics
Matches: 140, Mismatches: 39, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
2 11 0.08
3 123 0.88
4 5 0.04
5 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:113943777 original size:123 final size:122
Alignment explanation
Indices: 113943650--113944921 Score: 951
Period size: 123 Copynumber: 10.4 Consensus size: 122
113943640 GTTTGTAGGA
* * * *
113943650 AGCTTTACTTCGTTTTGCTCAGTTTCCGCTATTGATACGCGGCCATT-AGTGACCTCATTATAAG
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGA-TGACTTCATTATAAG
* * * * *
113943714 CTGTGTCATTGACAAGCTTTTCATTGTCATCATGCCCAATATTAAAGAATTCTACGGGG
65 CTGTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTCT-CGGGG
* * ** * * * * * * *
113943773 AGCTTTACTTCGTTATGCTCAGTTTCAACTATTAATATGTCGCCATTGATGACCTCATTGTAAGG
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAGC
* * * * * * * *
113943838 TGTGTAAACGACAAGC-TTTCTGTTACCATCATGCTCAATATTAAAGGATTCTGTGGGG
66 TGTGTCAATGACAAACTTTTC-ATTATCATCATGCCCAACATTAAAGGATTCT-CGGGG
** * * ** *
113943896 AGCTTCACTTTGTTTTGCTCAGTTTCCGCTACTGATATGCCATCATTGATGACTTCATTACAAG-
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAGC
* * * ** * * *
113943960 TCGTATCAATGACGAAGTTCCCCTTATCATCATACCCAACATT-AAGAGATT-TACTGGCG
66 T-GTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAG-GATTCT-C-GGGG
* * * * * * * * *
113944019 AGCTTTGCTTCTTTTTTCTCAATTTCCGCTACTGATAGGCTGCCATTGGTGACATCATTGTAAGT
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAGC
* ** * * * *
113944084 TGTGTCAAAGACAAGTTTTTGATTATCATCATGCCGAACATTAAGGGATTCTGTGGGG
66 TGTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTCT-CGGGG
* * * * * * * *
113944142 AGCTTTACTTCATTATGCTCAGCTTCAGCTACTAATACGTCGCCATTGATGA-TCTCATTGTAAG
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACT-TCATTATAAG
* ** * *
113944206 -TCGTGTCAGTGACAAACTTTTTGTTATCGTCATGCCCAACATTAAGGGATTCTCTGGGG
65 CT-GTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTCTC-GGGG
* * * * * *
113944265 AGCTTCGCTACGTTTTGCTCCA-TTTCCACTATTGATACGCCGTCATTCATGACTTCATTATAAG
1 AGCTTTGCTTCGTTTTGCT-CAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAG
* * * * * * * *
113944329 CTGCGTTAATGTCAAACTTTCCATCATCATCCTGCCCAACATTGAAGGATTCTCTGGG
65 CTGTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTCTCGGGG
* * * * * *
113944387 AGCTTCGCTACGTTTTGCTCCA-TTTCCACTATTGATACGCCGTCATTCATGACTTCATTATAAG
1 AGCTTTGCTTCGTTTTGCT-CAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAG
* * * * * * *
113944451 CTGCGTTAATGTCAAACTTTCCATCATCATCCTGCCCAACATTGAAGGATTCTCTGGGG
65 CTGTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTCTC-GGGG
* * *
113944510 AGCTTTGCTTCATTTTGCTCAGTTTCCGCTACTGATATGCAGCCATTGATGACTTCATTATAAGC
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAGC
* * * * * *
113944575 TATGTCAATGTCAAACTTTCCATCATCATCATGCCCAACATTAAAGTATTCTCTGGAG
66 TGTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTCTC-GGGG
* * * * *
113944633 AGCTTTGCTTCGTTTTGCTTAGTTTCCACTACTGATACACCGTCATTAATGACTTCATTATAAG-
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAGC
* * *
113944697 TCGAGTAAATGACAAAC-TTTC-----CATCATGCCCAACATTAAAGGATTCTTTGGGG
66 T-GTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTC-TCGGGG
* * * * * * * * * * *
113944750 AGCTTTGCTTCGATATCCTCAGGTTCAGCTACTAATACGTCGCCATTGATGACCTCATTGTATGT
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAGC
* * * * * * * * * *
113944815 TGTGTCAACGACAAGCTTATT-TTTATCGTAATGTCCAACATCAAGGGATTTTATGGAGG
66 TGTGTCAATGACAAACTT-TTCATTATCATCATGCCCAACATTAAAGGATTCT-CGG-GG
* ** * *
113944874 -GCTTTACTTCGTTCGGCTTAGTTTCCGCTATTGATACGCCGCCATTGA
1 AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGA
113944922 CCTTGTTATA
Statistics
Matches: 925, Mismatches: 195, Indels: 58
0.79 0.17 0.05
Matches are distributed among these distances:
117 87 0.09
118 3 0.00
119 2 0.00
122 138 0.15
123 682 0.74
124 13 0.01
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (122 bp):
AGCTTTGCTTCGTTTTGCTCAGTTTCCGCTACTGATACGCCGCCATTGATGACTTCATTATAAGC
TGTGTCAATGACAAACTTTTCATTATCATCATGCCCAACATTAAAGGATTCTCGGGG
Found at i:113944203 original size:369 final size:364
Alignment explanation
Indices: 113943650--113944883 Score: 1157
Period size: 369 Copynumber: 3.4 Consensus size: 364
113943640 GTTTGTAGGA
* * * *
113943650 AGCTTTACTTCGTTTTGCTCAGTTTCCGCTATTGATACGCGGCCATTAGTGACCTCATTATAAGC
1 AGCTTTGCTTCGTTTTGCTCAATTTCCGCTATTGATACGCCGCCATTAGTGACATCATTATAAGC
* * * * *
113943715 TGTGTCATTGACAAGCTTTTCATTGTCATCATGCCCAATATTAAAGAATTCTACGGGGAGCTTTA
66 TGTGTCAATGACAAGCTTTTCATTATCATCATGCCCAACATT-AAGGATTCTATGGGGAGCTTTA
* * * *
113943780 CTTCGTTATGCTCAGTTTCAACTATTAATATGTCGCCATTGATGACCTCATTGTAAGGTGTGTAA
130 CTTCATTATGCTCAGTTTCAGCTACTAATATGTCGCCATTGATGA-CTCATTGTAAGGTGTGTCA
* * * * * * * *
113943845 ACGACAAGCTTTCTGTTACCATCATGCTCAATATTAAAGGATTCTGTGGGGAGCTTCACTTTGTT
194 ATGACAAACTTTCTGTTATCATCATGCCCAACATTAAAGGATTCTCTGGGGAGCTTCGCTTCGTT
* * * * * *
113943910 TTGCTCAGTTTCCGCTACTGATATGCCATCATTGATGACTTCATTACAAGTCGTATCAATGACGA
259 TTGCTCAGTTTCCACTACTGATACGCCGTCATTAATGACTTCATTATAAGTCGT-T-AATGACAA
* * *
113943975 AGTTCCCCTTATCATCATACCCAACATT-AAGAGATT-TACTGGCG
322 ACTTCCCATCATCATCATACCCAACATTGAAG-GATTCT-CTGG-G
* * * * * * * *
113944019 AGCTTTGCTTCTTTTTTCTCAATTTCCGCTACTGATAGGCTGCCATTGGTGACATCATTGTAAGT
1 AGCTTTGCTTCGTTTTGCTCAATTTCCGCTATTGATACGCCGCCATTAGTGACATCATTATAAGC
* * * * *
113944084 TGTGTCAAAGACAAGTTTTTGATTATCATCATGCCGAACATTAAGGGATTCTGTGGGGAGCTTTA
66 TGTGTCAATGACAAGCTTTTCATTATCATCATGCCCAACATTAA-GGATTCTATGGGGAGCTTTA
* *
113944149 CTTCATTATGCTCAGCTTCAGCTACTAATACGTCGCCATTGATGATCTCATTGTAA-GTCGTGTC
130 CTTCATTATGCTCAGTTTCAGCTACTAATATGTCGCCATTGATGA-CTCATTGTAAGGT-GTGTC
* * * * *
113944213 AGTGACAAACTTTTTGTTATCGTCATGCCCAACATTAAGGGATTCTCTGGGGAGCTTCGCTACGT
193 AATGACAAACTTTCTGTTATCATCATGCCCAACATTAAAGGATTCTCTGGGGAGCTTCGCTTCGT
* * *
113944278 TTTGCTCCA-TTTCCACTATTGATACGCCGTCATTCATGACTTCATTATAAGCTGCGTTAATGTC
258 TTTGCT-CAGTTTCCACTACTGATACGCCGTCATTAATGACTTCATTATAAG-T-CGTTAATGAC
* * *
113944342 AAACTTTCCATCATCATCCTGCCCAACATTGAAGGATTCTCTGGG
320 AAACTTCCCATCATCATCATACCCAACATTGAAGGATTCTCTGGG
* * * * * *
113944387 AGCTTCGCTACGTTTTGCTCCATTTCCACTATTGATACGCCGTCATTCA-TGACTTCATTATAAG
1 AGCTTTGCTTCGTTTTGCTCAATTTCCGCTATTGATACGCCGCCATT-AGTGACATCATTATAAG
* * * * * * * *
113944451 CTGCGTTAATGTCAAACTTTCCATCATCATCCTGCCCAACATTGAAGGATTCTCTGGGGAGCTTT
65 CTGTGTCAATGACAAGCTTTTCATTATCATCATGCCCAACATT-AAGGATTCTATGGGGAGCTTT
* * * * * * *
113944516 GCTTCATTTTGCTCAGTTTCCGCTACTGATATG-CAGCCATTGATGACTTCATTATAAGCTATGT
129 ACTTCATTATGCTCAGTTTCAGCTACTAATATGTC-GCCATTGATGAC-TCATTGTAAGGTGTGT
* ** * * * *
113944580 CAATGTCAAACTTTCCATCATCATCATGCCCAACATTAAAGTATTCTCTGGAGAGCTTTGCTTCG
192 CAATGACAAACTTTCTGTTATCATCATGCCCAACATTAAAGGATTCTCTGGGGAGCTTCGCTTCG
* * *
113944645 TTTTGCTTAGTTTCCACTACTGATACACCGTCATTAATGACTTCATTATAAGTCGAGTAAATGAC
257 TTTTGCTCAGTTTCCACTACTGATACGCCGTCATTAATGACTTCATTATAAGTC--GTTAATGAC
* * *
113944710 AAACTT----TC--CATCATGCCCAACATTAAAGGATTCTTTGGGG
320 AAACTTCCCATCATCATCATACCCAACATTGAAGGATTCTCT-GGG
* * * ** * * * * * * *
113944750 AGCTTTGCTTCGATATCCTCAGGTTCAGCTACTAATACGTCGCCATT-GATGACCTCATTGTATG
1 AGCTTTGCTTCGTTTTGCTCAATTTCCGCTATTGATACGCCGCCATTAG-TGACATCATTATAAG
* * * * * * * *
113944814 TTGTGTCAACGACAAGCTTATT-TTTATCGTAATGTCCAACATCAAGGGATTTTATGGAGG-GCT
65 CTGTGTCAATGACAAGCTT-TTCATTATCATCATGCCCAACATTAA-GGATTCTATGG-GGAGCT
113944877 TTACTTC
127 TTACTTC
113944884 GTTCGGCTTA
Statistics
Matches: 699, Mismatches: 145, Indels: 48
0.78 0.16 0.05
Matches are distributed among these distances:
362 27 0.04
363 93 0.13
364 5 0.01
366 1 0.00
367 4 0.01
368 265 0.38
369 293 0.42
370 8 0.01
371 3 0.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.35
Consensus pattern (364 bp):
AGCTTTGCTTCGTTTTGCTCAATTTCCGCTATTGATACGCCGCCATTAGTGACATCATTATAAGC
TGTGTCAATGACAAGCTTTTCATTATCATCATGCCCAACATTAAGGATTCTATGGGGAGCTTTAC
TTCATTATGCTCAGTTTCAGCTACTAATATGTCGCCATTGATGACTCATTGTAAGGTGTGTCAAT
GACAAACTTTCTGTTATCATCATGCCCAACATTAAAGGATTCTCTGGGGAGCTTCGCTTCGTTTT
GCTCAGTTTCCACTACTGATACGCCGTCATTAATGACTTCATTATAAGTCGTTAATGACAAACTT
CCCATCATCATCATACCCAACATTGAAGGATTCTCTGGG
Found at i:113945144 original size:120 final size:120
Alignment explanation
Indices: 113944720--113945146 Score: 330
Period size: 120 Copynumber: 3.5 Consensus size: 120
113944710 AAACTTTCCA
* * * * * * *
113944720 TCATGCCCAACATTAAAGGATTCTTTGG-GGAGCTTTGCTTCGATATCCTCAGGTTCAGCTACTA
1 TCATGCCTAACATTAAGGGATTCTGTGGAGG-GCTTTGCTTCGTTATGCTCAGTTTCAGCTACTG
* * *
113944784 ATACGTCGCCATTGATGACCTCATTGTATGTTGTGTCAACGACAAGCTTATTT-TTATCG
65 ATACGTCGCC---GTTGACCTGATTGTAAGTTGTGTCAACGACAAGCTT-TTTGTTATCG
* * * * * ** * * *
113944843 TAATGTCC-AACATCAAGGGATTTTATGGAGGGCTTTACTTCGTTCGGCTTAGTTTCCGCTATTG
1 TCATG-CCTAACATTAAGGGATTCTGTGGAGGGCTTTGCTTCGTTATGCTCAGTTTCAGCTACTG
* * * * * * *
113944907 ATACGCCGCCATTGACCTTG-TTATAAACTT-T-TCCGATGACAAGCTTTTTGTTATCA
65 ATACGTCGCCGTTGACC-TGATTGT-AAGTTGTGT-CAACGACAAGCTTTTTGTTATCG
* ** * * ** * *
113944963 TCGTGCCTAACATTAATCGATTCTGTGGAGGGTTTTGCTTTGTTCCGGTCAG-TTCGCGCTACTG
1 TCATGCCTAACATTAAGGGATTCTGTGGAGGGCTTTGCTTCGTTATGCTCAGTTTC-AGCTACTG
* *
113945027 ATACATCACCGTTGACCTGATTGTAAGTTGTGTCAACGACAAGCTTTTTGTTATCG
65 ATACGTCGCCGTTGACCTGATTGTAAGTTGTGTCAACGACAAGCTTTTTGTTATCG
** *
113945083 TCATGCCTAATGTTAGGGGATTCTGTGG-GGAGCTTTGCTTCGTTATGCTCAGTTTCAGCTACTG
1 TCATGCCTAACATTAAGGGATTCTGTGGAGG-GCTTTGCTTCGTTATGCTCAGTTTCAGCTACTG
113945147 GCACATTGCC
Statistics
Matches: 231, Mismatches: 60, Indels: 29
0.72 0.19 0.09
Matches are distributed among these distances:
119 17 0.07
120 150 0.65
121 8 0.03
123 52 0.23
124 4 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (120 bp):
TCATGCCTAACATTAAGGGATTCTGTGGAGGGCTTTGCTTCGTTATGCTCAGTTTCAGCTACTGA
TACGTCGCCGTTGACCTGATTGTAAGTTGTGTCAACGACAAGCTTTTTGTTATCG
Found at i:113948722 original size:15 final size:15
Alignment explanation
Indices: 113948702--113948730 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
113948692 TGTGTGTGTG
113948702 TATATATATATGTTA
1 TATATATATATGTTA
113948717 TATATATATATGTT
1 TATATATATATGTT
113948731 CATTGCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
TATATATATATGTTA
Found at i:113953517 original size:30 final size:30
Alignment explanation
Indices: 113953482--113953550 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 30
113953472 ATACTTAAAC
*
113953482 TTTGATTTGGTGCAATTATACACATGAAAA
1 TTTGATTTGGTGCAAATATACACATGAAAA
* * * *
113953512 TTTGATTATGGTTCAAATGTATACATGAACA
1 TTTGATT-TGGTGCAAATATACACATGAAAA
*
113953543 TTTAATTT
1 TTTGATTT
113953551 TAATTCAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (30 bp):
TTTGATTTGGTGCAAATATACACATGAAAA
Found at i:113953540 original size:31 final size:31
Alignment explanation
Indices: 113953503--113953568 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
113953493 GCAATTATAC
* **
113953503 ACATGAAAATTTGATTATGGTTCAAATGTAT
1 ACATGAAAATTTAATTATAATTCAAATGTAT
* * *
113953534 ACATGAACATTTAATTTTAATTCAATTGTAT
1 ACATGAAAATTTAATTATAATTCAAATGTAT
113953565 ACAT
1 ACAT
113953569 TTAAATAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (31 bp):
ACATGAAAATTTAATTATAATTCAAATGTAT
Found at i:113957419 original size:12 final size:12
Alignment explanation
Indices: 113957402--113957428 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
113957392 ACAATAATTA
113957402 TTGGGTATTGTT
1 TTGGGTATTGTT
113957414 TTGGGTATTGTT
1 TTGGGTATTGTT
113957426 TTG
1 TTG
113957429 CATAAATCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.33, T:0.59
Consensus pattern (12 bp):
TTGGGTATTGTT
Found at i:113957673 original size:32 final size:32
Alignment explanation
Indices: 113957632--113957696 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
113957622 CAAGATGATG
*
113957632 AGATAGATGTAAAGGCTAAGGGAAAATATAAA
1 AGATAGATGTAAAGGCCAAGGGAAAATATAAA
*
113957664 AGATAGATGTAAAGGCCAAGGGCAAATATAAA
1 AGATAGATGTAAAGGCCAAGGGAAAATATAAA
113957696 A
1 A
113957697 TAAATTGCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.52, C:0.06, G:0.25, T:0.17
Consensus pattern (32 bp):
AGATAGATGTAAAGGCCAAGGGAAAATATAAA
Found at i:113959035 original size:42 final size:42
Alignment explanation
Indices: 113958923--113959044 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
113958913 TACCATACCA
* *
113958923 ATGCCATATCTCAGATATGGTCTTACATG-GGATCTCATATCG
1 ATGCCATATCTCAGATATGGTCTTACACGAAG-TCTCATATCG
* * *
113958965 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCTCAGATATGGTCTTACACGAAGTCTCATATCG
* *
113959008 ATGTCATATCTCAGATATGGTCTTACACGAAATCTCA
1 ATGCCATATCTCAGATATGGTCTTACACGAAGTCTCA
113959045 AATAACCCTA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.49
43 34 0.50
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCTCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:113960999 original size:24 final size:24
Alignment explanation
Indices: 113960971--113961030 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
113960961 TGGAGTTTGT
113960971 AATCAACATTTTATTTTCTAAAAC
1 AATCAACATTTTATTTTCTAAAAC
*
113960995 AATCAACATTTTTTTTTCTAAAAC
1 AATCAACATTTTATTTTCTAAAAC
113961019 AATCAACTATTT
1 AATCAAC-ATTT
113961031 AATTACAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 30 0.88
25 4 0.12
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (24 bp):
AATCAACATTTTATTTTCTAAAAC
Found at i:113962003 original size:6 final size:6
Alignment explanation
Indices: 113961992--113962022 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
113961982 TTAAAAAAAA
113961992 TTAATT TTAATT TTAATT TTAATT TTAATT T
1 TTAATT TTAATT TTAATT TTAATT TTAATT T
113962023 ATTTCCCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTAATT
Found at i:113969093 original size:28 final size:28
Alignment explanation
Indices: 113969056--113969117 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
113969046 GATGATATGC
* *
113969056 ATGTTTATGTATGGATTATGT-TATATTT
1 ATGTTAATGTATGGA-AATGTATATATTT
* *
113969084 ATGTTAATGTTTGGAAATGTATATGTTT
1 ATGTTAATGTATGGAAATGTATATATTT
113969112 ATGTTA
1 ATGTTA
113969118 CGTTTTTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.53
Consensus pattern (28 bp):
ATGTTAATGTATGGAAATGTATATATTT
Found at i:113979678 original size:2 final size:2
Alignment explanation
Indices: 113979671--113979702 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
113979661 CACAACTGAA
113979671 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113979703 CCATCAACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113980856 original size:41 final size:42
Alignment explanation
Indices: 113980749--113980906 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 42
113980739 ATATCATACA
* * ** * * *
113980749 ATGCCAACGTCCCAGACATGGTCTTACATGCTATCACATATCG
1 ATGCCAATGTCCCAAATGTGGTCTTACACG-AATCAAATATCG
* * *
113980792 ATGCCACTATCCCAGATAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAAAT-GTGGTCTTACACGAATCAAATATCG
* * * * *
113980833 ATGCCGATGTCCTAGACT-TGGTCTTACACATAATCACATATCG
1 ATGCCAATGTCCCA-AATGTGGTCTTACAC-GAATCAAATATCG
*
113980876 GTGCCAATGTCCCAAATGTGGTCTTACACGA
1 ATGCCAATGTCCCAAATGTGGTCTTACACGA
113980907 GAACACATAT
Statistics
Matches: 88, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
41 22 0.25
42 19 0.22
43 47 0.53
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAAATGTGGTCTTACACGAATCAAATATCG
Found at i:113980898 original size:43 final size:43
Alignment explanation
Indices: 113980781--113980917 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 43
113980771 CTTACATGCT
* * *
113980781 ATCACATATCGATGCCACTATCCCAGATAG-GGTCTTACAC-GA
1 ATCACATATCGATGCCAATGTCCCAAAT-GTGGTCTTACACAGA
* * * * *
113980823 ATCAAATA-CGATGCCGATGTCCTAGACT-TGGTCTTACACATA
1 ATCACATATCGATGCCAATGTCCCA-AATGTGGTCTTACACAGA
*
113980865 ATCACATATCGGTGCCAATGTCCCAAATGTGGTCTTACACGAGA
1 ATCACATATCGATGCCAATGTCCCAAATGTGGTCTTACAC-AGA
113980909 A-CACATATC
1 ATCACATATC
113980918 AGAAATCTTA
Statistics
Matches: 75, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
41 22 0.29
42 18 0.24
43 32 0.43
44 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
ATCACATATCGATGCCAATGTCCCAAATGTGGTCTTACACAGA
Found at i:113984837 original size:43 final size:43
Alignment explanation
Indices: 113984690--113984846 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
113984680 TGTGTTATCG
* *
113984690 TGTAAGACCACGTCTGAGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * * * * *
113984734 TATAAGACCATGCCTAGGACGTTGGCATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
*
113984776 TGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
113984819 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
113984847 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.30
43 38 0.42
44 26 0.29
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:113985216 original size:2 final size:2
Alignment explanation
Indices: 113985211--113985255 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
113985201 TTTGCATCGT
113985211 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
113985253 TA T
1 TA T
113985256 CGTAGCTATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:113990813 original size:35 final size:35
Alignment explanation
Indices: 113990666--113990820 Score: 170
Period size: 35 Copynumber: 4.4 Consensus size: 35
113990656 CAAAGTATGG
*
113990666 TACCTACATTTCATAGCTCAGTATGGACAATACCA
1 TACCTACATGTCATAGCTCAGTATGGACAATACCA
* * * * * *
113990701 TAACTACGTTTCACAACTCGGTATGGGA-AATACCA
1 TACCTACATGTCATAGCTCAGTAT-GGACAATACCA
* * * *
113990736 TACCTACGTATTATAGCTC-GATATGGATAATACCA
1 TACCTACATGTCATAGCTCAG-TATGGACAATACCA
*
113990771 TACCTACATGTCATAGCTCAGTATAGACAATACCA
1 TACCTACATGTCATAGCTCAGTATGGACAATACCA
113990806 TACCTACATGTCATA
1 TACCTACATGTCATA
113990821 ACTTTGCCAT
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
34 4 0.04
35 93 0.92
36 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (35 bp):
TACCTACATGTCATAGCTCAGTATGGACAATACCA
Found at i:113996038 original size:93 final size:97
Alignment explanation
Indices: 113995847--113996057 Score: 249
Period size: 93 Copynumber: 2.2 Consensus size: 97
113995837 GGTATAAGAT
* * *
113995847 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAGCACAACAAAGTCGATGCCATGTCCCA
113995912 GACAGGGCTTACACTGACTTTCATATATCGAG
66 GACAGGGCTTACACTGACTTTCATATATCGAG
* * *
113995944 GCTGATGCCATGTCCTAGACA-GGTCTTACACTGAC-A-CACAAC-AAG-CTGATGCTATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAGCACAACAAAGTC-GATGCCATGTCCC
* * * *
113996004 AGATAGGTCTTACACT-AGCTTGT-ATATCTTGAG
65 AGACAGGGCTTACACTGA-CTT-TCATATATCGAG
113996037 GCCGATG-CATGTCCCAGACAT
1 GCCGATGCCATGTCCCAGACAT
113996058 TTCCTACACT
Statistics
Matches: 98, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
92 14 0.14
93 46 0.47
94 6 0.06
95 1 0.01
96 13 0.13
97 18 0.18
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAGCACAACAAAGTCGATGCCATGTCCCA
GACAGGGCTTACACTGACTTTCATATATCGAG
Found at i:113998127 original size:13 final size:13
Alignment explanation
Indices: 113998111--113998143 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
113998101 TTTAATTAAA
*
113998111 TTAGTTAATTAGT
1 TTAGATAATTAGT
113998124 TTAGATAATTAGT
1 TTAGATAATTAGT
113998137 TTA-ATAA
1 TTAGATAA
113998144 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:114003523 original size:6 final size:6
Alignment explanation
Indices: 114003512--114003590 Score: 56
Period size: 6 Copynumber: 13.3 Consensus size: 6
114003502 AATCCTCCTA
* * *
114003512 TTTTAT TTTTA- -TTTAT TCTTGT TTTTAT TTTAAT TTATT-T ATTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT -TTTTAT
* * * *
114003559 TCTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
114003591 CAATTTTCTT
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
4 4 0.07
6 47 0.85
7 4 0.07
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:114003560 original size:31 final size:31
Alignment explanation
Indices: 114003513--114003585 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
114003503 ATCCTCCTAT
* *
114003513 TTTATTTTTATTTATTCTTGTTTTTATTTTAA
1 TTTATTTAT-TTTATTCTTATTTTTATTTTAA
* *
114003545 TTTATTTATTTTATTCTTATTTTTCTTTTGA
1 TTTATTTATTTTATTCTTATTTTTATTTTAA
114003576 -TT-TTTATTTT
1 TTTATTTATTTT
114003586 CATTTCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 8 0.22
30 2 0.05
31 19 0.51
32 8 0.22
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.77
Consensus pattern (31 bp):
TTTATTTATTTTATTCTTATTTTTATTTTAA
Found at i:114003568 original size:26 final size:26
Alignment explanation
Indices: 114003510--114003567 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
114003500 TGAATCCTCC
* * *
114003510 TATTTTATTTTTATTTATTCTTGTTTT
1 TATTTTA-ATTTATTTATTCTTATTCT
114003537 TATTTTAATTTATTTATT-TTATTCT
1 TATTTTAATTTATTTATTCTTATTCT
114003562 TATTTT
1 TATTTT
114003568 TCTTTTGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 11 0.39
26 10 0.36
27 7 0.25
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (26 bp):
TATTTTAATTTATTTATTCTTATTCT
Found at i:114011785 original size:15 final size:15
Alignment explanation
Indices: 114011741--114011786 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
114011731 CTTGGGTTTC
* *
114011741 TTTATCCTGGATCTT
1 TTTATTCTGGATTTT
114011756 TTTATTCTGGATTTT
1 TTTATTCTGGATTTT
*
114011771 TTTATTCTGGGTTTT
1 TTTATTCTGGATTTT
114011786 T
1 T
114011787 CTATCTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.11, C:0.11, G:0.15, T:0.63
Consensus pattern (15 bp):
TTTATTCTGGATTTT
Found at i:114014614 original size:27 final size:27
Alignment explanation
Indices: 114014435--114014640 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
114014425 TTAGTTTACC
* * **
114014435 AAATTACAAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
114014462 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** *
114014489 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
114014516 AAATTACCAAAATACACTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
114014543 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
114014570 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
114014597 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
114014624 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
114014641 TCGACCTGTA
Statistics
Matches: 156, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:114014622 original size:81 final size:81
Alignment explanation
Indices: 114014435--114014712 Score: 267
Period size: 81 Copynumber: 3.4 Consensus size: 81
114014425 TTAGTTTACC
* * * **
114014435 AAATTACAAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AA
* *
114014499 AATACCCTTTA-TTTATA
65 AATACCC-CTAGTTTGTA
* * *
114014516 AAATTACCAAAATACACTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
114014581 ATACCCCTAGTTTGTA
66 ATACCCCTAGTTTGTA
* * ** *** **
114014597 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTATCAA
* * *
114014661 AATA-CCCTCGACTGGTA
65 AATACCCCTAG-TTTGTA
* * *
114014678 AAATTACCAAAGTACCCCTGATTTATAGAATTACC
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACC
114014713 GTTTACCCTC
Statistics
Matches: 166, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 11 0.07
81 154 0.93
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
ATACCCCTAGTTTGTA
Found at i:114014654 original size:27 final size:27
Alignment explanation
Indices: 114014624--114014684 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
114014614 CTAATTTGTG
114014624 AAATTACTGAAATACCCTCGACCT-GTA
1 AAATTACTGAAATACCCTCGA-CTGGTA
*
114014651 AAATTATTGAAATACCCTCGACTGGTA
1 AAATTACTGAAATACCCTCGACTGGTA
114014678 AAATTAC
1 AAATTAC
114014685 CAAAGTACCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACTGGTA
Found at i:114014693 original size:27 final size:27
Alignment explanation
Indices: 114014633--114014694 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
114014623 GAAATTACTG
**
114014633 AAATACCCTCGACCTGTAAAATTATTG
1 AAATACCCTCGACCTGTAAAATTATCC
114014660 AAATACCCTCGA-CTGGTAAAATTA-CC
1 AAATACCCTCGACCT-GTAAAATTATCC
114014686 AAAGTACCC
1 AAA-TACCC
114014695 CTGATTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.24
Consensus pattern (27 bp):
AAATACCCTCGACCTGTAAAATTATCC
Found at i:114014752 original size:27 final size:27
Alignment explanation
Indices: 114014693--114014990 Score: 375
Period size: 27 Copynumber: 11.1 Consensus size: 27
114014683 ACCAAAGTAC
* *
114014693 CCCT-GATTTATAGAATTACCG-TTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
114014718 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * **
114014745 CCCTCGATTTATAGAATTATTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* **
114014772 CCTTATATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
114014799 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
114014826 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * * *
114014853 CCCTCAATTGACAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
114014880 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
114014907 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
114014934 CCCTTGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
114014961 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
114014988 CCC
1 CCC
114014991 CTAGGGTGTT
Statistics
Matches: 239, Mismatches: 32, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
25 4 0.02
26 14 0.06
27 221 0.92
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:114014826 original size:81 final size:81
Alignment explanation
Indices: 114014698--114014990 Score: 421
Period size: 81 Copynumber: 3.6 Consensus size: 81
114014688 AGTACCCCTG
* *
114014698 ATTTATAGAATTACCG-TTTACCCTCGATTTACAAAATTA-TCGTTTTACCCTCGATTTATAGAA
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTACAGAA
*
114014761 TTATTGTTTTA-CCTTA
65 TTACTGTTTTACCCTTA
*
114014777 TATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAA
1 -ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAA
* *
114014842 TTACCGTTTTACCCTCA
65 TTACTGTTTTACCCTTA
* * *
114014859 ATTGACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAAT
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAAT
*
114014924 TACTGTTTTACCCTTG
66 TACTGTTTTACCCTTA
* * **
114014940 ATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCC
114014991 CTAGGGTGTT
Statistics
Matches: 191, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
80 14 0.07
81 172 0.90
82 5 0.03
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAAT
TACTGTTTTACCCTTA
Found at i:114015525 original size:25 final size:25
Alignment explanation
Indices: 114015497--114015560 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
114015487 CATTCACATT
* *
114015497 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
114015522 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
114015547 CTGATTCTGATTCT
1 CTGATTCTGATTCT
114015561 AGTTCTGATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:114015533 original size:6 final size:6
Alignment explanation
Indices: 114015494--114015569 Score: 59
Period size: 6 Copynumber: 12.3 Consensus size: 6
114015484 TTGCATTCAC
* * *
114015494 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
114015544 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
114015570 AGTGTTTCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
5 4 0.07
6 43 0.77
7 7 0.12
8 2 0.04
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:114017534 original size:27 final size:27
Alignment explanation
Indices: 114017510--114017787 Score: 245
Period size: 27 Copynumber: 10.3 Consensus size: 27
114017500 TTAGTTTACC
* *
114017510 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
*
114017537 AAATTA-CAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
114017563 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
114017590 AAATTACCAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
*
114017617 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
114017644 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
** * *
114017671 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTATA
** *** *
114017698 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTATA
*** * ** *
114017725 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
114017752 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
*
114017779 GAATTACCA
1 AAATTACCA
114017788 TTTTACCCTC
Statistics
Matches: 215, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 27 0.13
27 185 0.86
28 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:114017622 original size:54 final size:53
Alignment explanation
Indices: 114017510--114017687 Score: 275
Period size: 54 Copynumber: 3.3 Consensus size: 53
114017500 TTAGTTTACC
* *
114017510 AAATTACCAAAATACCCTTGGTTTACAAAATTACAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACAAAATACCCCTAGTTTGTA
* * *
114017563 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTA-CAAAATACCCCTAGTTTGTA
* *
114017617 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTA-CAAAATACCCCTAGTTTGTA
114017671 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
114017688 CTAATTTGTG
Statistics
Matches: 114, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 30 0.26
54 84 0.74
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
AAATTACCAAAATACCCTTGGTTTATAAAATTACAAAATACCCCTAGTTTGTA
Found at i:114017647 original size:81 final size:79
Alignment explanation
Indices: 114017510--114017787 Score: 294
Period size: 81 Copynumber: 3.5 Consensus size: 79
114017500 TTAGTTTACC
*
114017510 AAATTACCAAAATA-CCCTTGGTTTACAAAATTA-CAAAATACCCCTGGTTTGTAAAATTACTAA
1 AAATTACCAAAATACCCCTT-GTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TAA
*
114017573 AATACCCTTTGTTTATA
64 AATACCC-TTGTTTGTA
*
114017590 AAATTACCAAAATACCCCTTGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTAT-AAA
*
114017655 ATACCCCTAGTTTGTA
65 ATA-CCCTTGTTTGTA
** * * ** *** *
114017671 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTTGTTTATAAAATTACCAAAATACCCCT-GGTTTGTAAAATTA-TAA
*
114017735 AATACCCTTGACTTGTA
64 AATACCCTTG-TTTGTA
* *
114017752 AAATTACCAAAGTACCCC-TGATTTATAGAATTACCA
1 AAATTACCAAAATACCCCTTG-TTTATAAAATTACCA
114017788 TTTTACCCTC
Statistics
Matches: 167, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
80 35 0.21
81 128 0.77
82 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (79 bp):
AAATTACCAAAATACCCCTTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTATAAAA
TACCCTTGTTTGTA
Found at i:114017794 original size:27 final size:27
Alignment explanation
Indices: 114017767--114018038 Score: 323
Period size: 27 Copynumber: 10.1 Consensus size: 27
114017757 ACCAAAGTAC
*
114017767 CCCT-GATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
114017793 CCCTCGATTTACAGAATTA-CAGTTTTA
1 CCCTCGATTTACAGAATTACCA-TTTTA
*
114017820 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* **
114017847 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
114017874 CCCTTGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* **
114017901 CCCTCGATTGACAGAATTATTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * * *
114017928 CTCTCGGTTTACAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
114017955 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
114017982 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
114018009 CCCTCGATTTATAAAATTGCCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
114018036 CCC
1 CCC
114018039 CTAGGGTGTT
Statistics
Matches: 215, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 6 0.03
27 207 0.96
28 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:114018573 original size:6 final size:6
Alignment explanation
Indices: 114018542--114018623 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
114018532 TTGCATTCAC
* * *
114018542 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
114018592 ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
114018624 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.08
6 48 0.77
7 6 0.10
8 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:114018609 original size:25 final size:25
Alignment explanation
Indices: 114018542--114018609 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
114018532 TTGCATTCAC
* * *
114018542 ATTCTGATTTTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
114018567 ATACTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
114018592 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
114018610 ATTCTAGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:114020390 original size:32 final size:32
Alignment explanation
Indices: 114020354--114020418 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
114020344 TTTGCTTATA
*
114020354 TGGTTATGTTACTTGCTATTTGCATGTGAACT
1 TGGTTATGTCACTTGCTATTTGCATGTGAACT
114020386 TGGTTATGTCACTTGCTATTTGCATGTGAACT
1 TGGTTATGTCACTTGCTATTTGCATGTGAACT
114020418 T
1 T
114020419 ACTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.18, C:0.14, G:0.22, T:0.46
Consensus pattern (32 bp):
TGGTTATGTCACTTGCTATTTGCATGTGAACT
Found at i:114024950 original size:20 final size:20
Alignment explanation
Indices: 114024913--114024950 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
114024903 GGACTAAACC
*
114024913 GAAAACTTGAAAAGTTTCAA
1 GAAAACTTGAAAACTTTCAA
114024933 GAAAACTT-AGAAACTTTC
1 GAAAACTTGA-AAACTTTC
114024951 CCCATGAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.26
Consensus pattern (20 bp):
GAAAACTTGAAAACTTTCAA
Found at i:114026911 original size:49 final size:49
Alignment explanation
Indices: 114026812--114027071 Score: 195
Period size: 49 Copynumber: 5.5 Consensus size: 49
114026802 AGATGCCGAC
* ** * * *
114026812 GCCATGTCCCAGACATGGTCTTACACTGGCTAGC--ACATCAAAGTTGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATATCAAGGCTGAT
*
114026860 GCCATGTCCCTGACAGGTCTTACACTGACTTTCATATATCAAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAGGCTGAT
* * *
114026909 GCCATGTCCCAGACAGGTCTTACACTGGCTCTT-ATCTATC--GGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACT-TTCATATATCAAGG-CT-GAT
* * * * *
114026958 GCCATGTCCTAGACAGGTCTTACATTAAC--ACACA-A-CAA-GCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAGGCTGAT
* * * *
114027002 GCCATGTCCCAGACAGGTCTTATACT-ACTTGT-ATATCTCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTT-TCATATATCAAGGCTGAT
* *
114027050 -ACATGTCCCAGACATGTCTTAC
1 GCCATGTCCCAGACAGGTCTTAC
114027072 GCTAGCACAC
Statistics
Matches: 168, Mismatches: 30, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 26 0.15
45 4 0.02
46 2 0.01
47 39 0.23
48 20 0.12
49 73 0.43
50 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAGGCTGAT
Found at i:114026980 original size:98 final size:91
Alignment explanation
Indices: 114026812--114027023 Score: 237
Period size: 98 Copynumber: 2.2 Consensus size: 91
114026802 AGATGCCGAC
*
114026812 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTTGATGCCATGTCCCTGACAGG
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCCTGACAGG
* * *
114026877 TCTTACACTGACTTTCATATATCAAGGCTGAT
65 TCTTACACTAAC--ACACA-A-CAA-GCTGAT
*** ***
114026909 GCCATGTCCCAGACAGGTCTTACACTGGCTCTTATCTATCGGTGTCGATGCCATGT-CCTAGACA
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGATGCCATGTCCCT-GACA
*
114026973 GGTCTTACATTAACACACAACAAGCTGAT
63 GGTCTTACACTAACACACAACAAGCTGAT
114027002 GCCATGTCCCAGACAGGTCTTA
1 GCCATGTCCCAGACAGGTCTTA
114027024 TACTACTTGT
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
93 28 0.28
94 3 0.03
95 1 0.01
96 19 0.19
97 19 0.19
98 31 0.31
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (91 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCCTGACAGGT
CTTACACTAACACACAACAAGCTGAT
Found at i:114027082 original size:93 final size:93
Alignment explanation
Indices: 114026857--114027082 Score: 217
Period size: 93 Copynumber: 2.4 Consensus size: 93
114026847 CATCAAAGTT
* * * * *
114026857 GATGCCATGTCCCTGACAGGTCTTACACTGACTTTCATATATCAAGGCTGATGCCATGTCCCAGA
1 GATGACATGTCCCAGACAGGTCTTACACTAAC--ACACA-A-CAA-GCTGATGCCATGTCCCAGA
* * *
114026922 CAGGTCTTACACTGGCTCTTATCTATCGGTGTC
61 CAGGTCTTACACTGACTCTTATATATCGGTGCC
* * *
114026955 GATGCCATGTCCTAGACAGGTCTTACATTAACACACAACAAGCTGATGCCATGTCCCAGACAGGT
1 GATGACATGTCCCAGACAGGTCTTACACTAACACACAACAAGCTGATGCCATGTCCCAGACAGGT
* *
114027020 CTTATACT-ACT-TGTATATCTCGAG-GCC
66 CTTACACTGACTCT-TATATATCG-GTGCC
* * *
114027047 GAT-ACATGTCCCAGACATGTCTTACGCTAGCACACA
1 GATGACATGTCCCAGACAGGTCTTACACTAACACACA
114027083 TATCATCCAA
Statistics
Matches: 109, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
91 28 0.26
92 14 0.13
93 32 0.29
94 3 0.03
95 1 0.01
96 3 0.03
98 28 0.26
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (93 bp):
GATGACATGTCCCAGACAGGTCTTACACTAACACACAACAAGCTGATGCCATGTCCCAGACAGGT
CTTACACTGACTCTTATATATCGGTGCC
Found at i:114031078 original size:68 final size:68
Alignment explanation
Indices: 114030985--114031142 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 68
114030975 TTCACTTGGA
* *
114030985 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
114031050 CGT
66 CGT
* *
114031053 ATCACACATGTGACCTAGCTACATTTATCTCTCATGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
114031118 CGT
66 CGT
114031121 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
114031143 TATATAGTAT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
CGT
Found at i:114031175 original size:68 final size:66
Alignment explanation
Indices: 114030985--114031168 Score: 253
Period size: 68 Copynumber: 2.7 Consensus size: 66
114030975 TTCACTTGGA
* * *
114030985 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCT--CGTAGCTCTCTTGTCTACATGGGATACATCC
114031050 CGT
64 CGT
114031053 ATCACACATGTGACCTAGCTACATTTATCTCTCATGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTC--GTAGCTCTCTTGTCTACATGGGATACATCC
114031118 CGT
64 CGT
* *
114031121 ATCACACATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 ATCACACATGTGACCTAGCTAC-ATTTA-TCTCTCGTAGCTC-TCTTGT
114031169 ACACATGATG
Statistics
Matches: 106, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
66 1 0.01
67 1 0.01
68 95 0.90
69 4 0.04
70 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (66 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCGTAGCTCTCTTGTCTACATGGGATACATCCCG
T
Found at i:114032519 original size:35 final size:35
Alignment explanation
Indices: 114032480--114032746 Score: 290
Period size: 35 Copynumber: 7.6 Consensus size: 35
114032470 CAGTATGGTT
* **
114032480 AATACCATACCTTCGTTTCATAGCTCAATATGGAC
1 AATACCATACCTACGTTTCATAGCTCGGTATGGAC
* * *
114032515 AATACCATACCTACGTTTCACAACTTGGTATGGGA-
1 AATACCATACCTACGTTTCATAGCTCGGTAT-GGAC
* *
114032550 AATACCATACCTACGTATT-ATAGCTCGGTTTGGAT
1 AATACCATACCTACGT-TTCATAGCTCGGTATGGAC
* * *
114032585 AATACCATACCTACGTTTTAAAGCTCAGTATGGAC
1 AATACCATACCTACGTTTCATAGCTCGGTATGGAC
* * *
114032620 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCATAGCTCGGTAT-GGAC
* * *
114032655 AATACCATACCTACATATT-ATAGCTCGATATGGAT
1 AATACCATACCTACGT-TTCATAGCTCGGTATGGAC
* *
114032690 AATACCATACCTACGTGTCATAGCTCAGTATGGAC
1 AATACCATACCTACGTTTCATAGCTCGGTATGGAC
*
114032725 AATACCATACCTACGTGTCATA
1 AATACCATACCTACGTTTCATA
114032747 ACATTTCCAT
Statistics
Matches: 197, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
34 9 0.05
35 178 0.90
36 10 0.05
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (35 bp):
AATACCATACCTACGTTTCATAGCTCGGTATGGAC
Found at i:114032767 original size:105 final size:105
Alignment explanation
Indices: 114032473--114032740 Score: 437
Period size: 105 Copynumber: 2.6 Consensus size: 105
114032463 CACAACTCAG
* * *
114032473 TATGGTTAATACCATACCTTCGTTTCATAGCTCAATATGGACAATACCATACCTACGTTTCACAA
1 TATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGTTTCACAA
* *
114032538 CTTGGTATGGGAAATACCATACCTACGTATTATAGCTCGG
66 CTTGGTATGGGAAATACCATACCTACATATTATAGCTCGA
* * * *
114032578 TTTGGATAATACCATACCTACGTTTTAAAGCTCAGTATGGACAATACCATACCTACATTTCACAA
1 TATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGTTTCACAA
*
114032643 CTCGGTATGGGAAATACCATACCTACATATTATAGCTCGA
66 CTTGGTATGGGAAATACCATACCTACATATTATAGCTCGA
*
114032683 TATGGATAATACCATACCTACGTGTCATAGCTCAGTATGGACAATACCATACCTACGT
1 TATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGT
114032741 GTCATAACAT
Statistics
Matches: 148, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
105 148 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (105 bp):
TATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGTTTCACAA
CTTGGTATGGGAAATACCATACCTACATATTATAGCTCGA
Found at i:114044352 original size:40 final size:40
Alignment explanation
Indices: 114044250--114044415 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 40
114044240 AAATTGAATG
* * * * *
114044250 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
114044290 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
114044330 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * * *
114044370 CTATTCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
114044410 ATATCC
1 ATATCC
114044416 AGTTATATTC
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
39 4 0.04
40 97 0.94
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:114046437 original size:20 final size:20
Alignment explanation
Indices: 114046412--114046459 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
114046402 TGTTTAAATA
114046412 AAATTTTAGAATTTTTCATC
1 AAATTTTAGAATTTTTCATC
114046432 AAATTTTAGAATTTTTCATC
1 AAATTTTAGAATTTTTCATC
114046452 AAATTTTA
1 AAATTTTA
114046460 CAAGTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (20 bp):
AAATTTTAGAATTTTTCATC
Found at i:114047918 original size:39 final size:39
Alignment explanation
Indices: 114047864--114047941 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
114047854 GAAGCAAAAG
*
114047864 TTAGTGCATTGGTTGTACGACTTCTGCAATATGTACTGT
1 TTAGTGCATTAGTTGTACGACTTCTGCAATATGTACTGT
*
114047903 TTAGTGCGTTAGTTGTACGACTTCTGCAATATGTACTGT
1 TTAGTGCATTAGTTGTACGACTTCTGCAATATGTACTGT
114047942 CATTTACAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.41
Consensus pattern (39 bp):
TTAGTGCATTAGTTGTACGACTTCTGCAATATGTACTGT
Found at i:114050625 original size:33 final size:33
Alignment explanation
Indices: 114050515--114050612 Score: 169
Period size: 33 Copynumber: 3.0 Consensus size: 33
114050505 TGTATTTTGC
*
114050515 ACTGTACAGATACTGGATAGGGCTTTGGCCCAA
1 ACTGTACTGATACTGGATAGGGCTTTGGCCCAA
*
114050548 ACTGTACTAATACTGGATAGGGCTTTGGCCCAA
1 ACTGTACTGATACTGGATAGGGCTTTGGCCCAA
*
114050581 ACTGTACTGATACTGAATAGGGCTTTGGCCCA
1 ACTGTACTGATACTGGATAGGGCTTTGGCCCA
114050613 GACTATATTG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 61 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (33 bp):
ACTGTACTGATACTGGATAGGGCTTTGGCCCAA
Found at i:114062819 original size:33 final size:33
Alignment explanation
Indices: 114062775--114062855 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
114062765 TGCATTTTGC
* *
114062775 ACTGTACTGATACTGAATAGGGCTTTGGCCCAG
1 ACTGTACTGATACTAAATAGGGCTTTGGCCAAG
*
114062808 ATTGTACTGATACTAAATAGGGCTTTGGCCAAG
1 ACTGTACTGATACTAAATAGGGCTTTGGCCAAG
114062841 ACTGTACTGATACTA
1 ACTGTACTGATACTA
114062856 TGTTATTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (33 bp):
ACTGTACTGATACTAAATAGGGCTTTGGCCAAG
Found at i:114066623 original size:37 final size:37
Alignment explanation
Indices: 114066573--114066650 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
114066563 TATAAAAGAA
*
114066573 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
114066610 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
114066647 GTCT
1 GTCT
114066651 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
Found at i:114066813 original size:49 final size:49
Alignment explanation
Indices: 114066753--114066875 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
114066743 CATATATTTT
*
114066753 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114066802 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114066851 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
114066876 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:114070016 original size:40 final size:41
Alignment explanation
Indices: 114069972--114070070 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
114069962 TCGATTGTTC
* * **
114069972 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
114070012 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
114070053 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
114070071 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:114070591 original size:29 final size:29
Alignment explanation
Indices: 114070554--114071008 Score: 795
Period size: 29 Copynumber: 15.7 Consensus size: 29
114070544 TGTTGAAAAA
* *
114070554 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
114070583 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
114070612 TTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070641 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070670 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070699 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070728 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070757 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070786 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070815 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070844 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070873 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070902 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114070931 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
114070960 CTCGCACACATAGTGCCTCGGTTAACGGAAT
1 CTCGCACACACAGTGCCTCGATT-ACTG-AT
*
114070991 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
114071009 TAATCATTCG
Statistics
Matches: 413, Mismatches: 11, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
29 392 0.95
30 19 0.05
31 2 0.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:114073068 original size:37 final size:37
Alignment explanation
Indices: 114073018--114073095 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
114073008 TATAAAAGAA
114073018 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
114073055 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
114073092 GTCT
1 GTCT
114073096 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:114073258 original size:49 final size:49
Alignment explanation
Indices: 114073198--114073320 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
114073188 CATATATTTT
*
114073198 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114073247 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114073296 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
114073321 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:114078301 original size:40 final size:40
Alignment explanation
Indices: 114078225--114078448 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
114078215 GCTACTCGTT
*
114078225 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
114078264 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
114078304 CAAATGCCTTCAGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
114078344 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
114078383 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
114078424 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
114078449 CATCATTCGA
Statistics
Matches: 161, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 43 0.27
40 103 0.64
41 13 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:114078367 original size:79 final size:78
Alignment explanation
Indices: 114078225--114078448 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
114078215 GCTACTCGTT
* * * *
114078225 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACTTAGCCCGATT-TAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGA
* *
114078290 TTTAGTGACTCGCA
65 ATTAGTAACTCGCA
*
114078304 CAAATGCCTTCAGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCG-ATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
114078368 AATTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * * * *
114078383 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAG-CCCGATTTAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCG
114078447 GA
63 GA
114078449 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.02
79 68 0.54
80 53 0.42
81 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:114078432 original size:119 final size:119
Alignment explanation
Indices: 114078227--114078446 Score: 302
Period size: 119 Copynumber: 1.8 Consensus size: 119
114078217 TACTCGTTCA
* *
114078227 AATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
* *
114078292 TAGTGACTCGCACAAATGCCTTCAGGACTTAACCCGAATTTAGTAACTCGCACC
66 TAGTCACTAGCACAAATGCCTTCAGGACTTAACCCGAATTTAGTAACTCGCACC
* * **
114078346 AATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* *
114078409 TATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
64 TATAGTCAC-TAGCACAAATGCCTTCAGGACTTAACCCG
114078447 GACATCATTC
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
118 4 0.05
119 76 0.86
120 8 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
TAGTCACTAGCACAAATGCCTTCAGGACTTAACCCGAATTTAGTAACTCGCACC
Found at i:114079797 original size:123 final size:121
Alignment explanation
Indices: 114079563--114079833 Score: 425
Period size: 123 Copynumber: 2.1 Consensus size: 121
114079553 GACATCAACA
*
114079563 CAAATCCACCTTAGCCGAATATCATCTCCATGACATAGTAAAGATTTGAACCATGCTAGTTAGAA
1 CAAA-CCACCATAGCCGAATATCATCTCCATGACATAGTAAAGATTTGAACCATGCTAGTTAGAA
114079628 CTCAAACTAACAACTACATGCATGAATCTCATGACAACATCAAACATACCTTAGTCTAG
65 CTCAAACTAACAACTACATGCATGAATCTCATGAC-A-ATCAAACATACCTTAGTCTAG
114079687 CAAACCACCATAGCCGAATATCATCTCCATGACATAGTAAAGATTTGAACCATGGGCTAGTTAGA
1 CAAACCACCATAGCCGAATATCATCTCCATGACATAGTAAAGATTTGAACCAT--GCTAGTTAGA
114079752 ACTCAAACTAACAACTAAAAACATGCATGAATCTCATGGACAACATCAAACATACCTTAGTCTAG
64 ACTCAAACTAACAACT----ACATGCATGAATCTCAT-GAC-A-ATCAAACATACCTTAGTCTAG
114079817 CAAACCACCATAGCCGA
1 CAAACCACCATAGCCGA
114079834 TTTTCTCAAG
Statistics
Matches: 139, Mismatches: 1, Indels: 8
0.94 0.01 0.05
Matches are distributed among these distances:
123 48 0.35
124 4 0.03
125 26 0.19
129 17 0.12
130 44 0.32
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.23
Consensus pattern (121 bp):
CAAACCACCATAGCCGAATATCATCTCCATGACATAGTAAAGATTTGAACCATGCTAGTTAGAAC
TCAAACTAACAACTACATGCATGAATCTCATGACAATCAAACATACCTTAGTCTAG
Found at i:114086531 original size:119 final size:120
Alignment explanation
Indices: 114086349--114086569 Score: 297
Period size: 119 Copynumber: 1.9 Consensus size: 120
114086339 TACTCGTTCA
*
114086349 AATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGAACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
114086414 TTAGTGAC-TCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
66 ATAGTCACTTAGCACAAA-GCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
* * **
114086469 AATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGAACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
114086531 ATATAGTCACTTAGCATAAAGCCTTCGGGACTTAGCCCG
64 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCG
114086570 GACATCATTC
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 66 0.75
120 18 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGAACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
Found at i:114086571 original size:40 final size:40
Alignment explanation
Indices: 114086328--114086571 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
114086318 CGGAATTTAT
** * *
114086328 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGAACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
114086368 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
114086408 CCGGATTTAGTGACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
114086448 CCGAATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
114086487 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
114086527 CCGGATATAGTCACTTAGCATAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
114086567 CCGGA
1 CCGGA
114086572 CATCATTCGA
Statistics
Matches: 176, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 131 0.74
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:114098443 original size:40 final size:40
Alignment explanation
Indices: 114098307--114098460 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
114098297 GTGTGCATGA
* *
114098307 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * *
114098347 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
114098387 GCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
114098427 GCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGC
114098461 CTTGGTGCGG
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:114101361 original size:26 final size:27
Alignment explanation
Indices: 114101294--114101420 Score: 132
Period size: 27 Copynumber: 4.7 Consensus size: 27
114101284 TGTACCTGAA
* * *
114101294 CCCTTATGAGACAAAATGACTGTTTTG
1 CCCTTATGCGATAAAATGACTATTTTG
* *
114101321 CCCTTATGGGGT-AAATGACTATTTTG
1 CCCTTATGCGATAAAATGACTATTTTG
*
114101347 CCCTTATGCGATAAAATGA-TGATTTTA
1 CCCTTATGCGATAAAATGACT-ATTTTG
* * * *
114101374 CCCCTATGCGATAAAATAACAATTTTT
1 CCCTTATGCGATAAAATGACTATTTTG
*
114101401 CCCTTATGAGATAAAATGAC
1 CCCTTATGCGATAAAATGAC
114101421 CGAAATACCT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
26 24 0.29
27 59 0.71
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (27 bp):
CCCTTATGCGATAAAATGACTATTTTG
Found at i:114101442 original size:27 final size:25
Alignment explanation
Indices: 114101402--114101526 Score: 110
Period size: 27 Copynumber: 4.7 Consensus size: 25
114101392 ACAATTTTTC
*
114101402 CCTTATGAGATAAAATGACCGAAATA
1 CCTTAT-AGGTAAAATGACCGAAATA
*
114101428 CCTTCATAGGGTAAAATAACCGAAATA
1 CCTT-ATA-GGTAAAATGACCGAAATA
*
114101455 CCCTTAT-GGAAAAATGACCGAAATA
1 -CCTTATAGGTAAAATGACCGAAATA
* *
114101480 CCTTTATATGGTAAAATGACTGTAATA
1 CC-TTATA-GGTAAAATGACCGAAATA
114101507 CCCCTGTA-AGGTAAAATGAC
1 --CCT-TATAGGTAAAATGAC
114101527 TGATTTGCCC
Statistics
Matches: 83, Mismatches: 7, Indels: 17
0.78 0.07 0.16
Matches are distributed among these distances:
24 2 0.02
25 20 0.24
26 5 0.06
27 46 0.55
28 6 0.07
29 4 0.05
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.25
Consensus pattern (25 bp):
CCTTATAGGTAAAATGACCGAAATA
Found at i:114119135 original size:20 final size:19
Alignment explanation
Indices: 114119110--114119151 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
114119100 AGCTCAATAA
114119110 TGATTAAATTGAATTAATTT
1 TGATTAAA-TGAATTAATTT
**
114119130 TGATTAAATGGGTTAATTT
1 TGATTAAATGAATTAATTT
114119149 TGA
1 TGA
114119152 ATACATATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (19 bp):
TGATTAAATGAATTAATTT
Found at i:114119432 original size:40 final size:40
Alignment explanation
Indices: 114119359--114119463 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 40
114119349 ACTATGTTTG
* *
114119359 GCACTTAGTGTGCGATTCGAGATAGCTTGGGCTATATAAA
1 GCACTTAGTGTGCGATTCGAGATAACTTCGGCTATATAAA
* * ***
114119399 GCACTTAGTGTGTGAATTGGA-ATAACTTCGGCTATATGTG
1 GCACTTAGTGTGCG-ATTCGAGATAACTTCGGCTATATAAA
* *
114119439 GCACTAAGTGTGCGATACCGAGATA
1 GCACTTAGTGTGCGAT-TCGAGATA
114119464 GTTTCAGCTT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.80
41 8 0.16
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAACTTCGGCTATATAAA
Found at i:114122483 original size:24 final size:25
Alignment explanation
Indices: 114122434--114122484 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
114122424 CAGTGAAGGA
*
114122434 GGCAGAAACCAGGAAGACAAGGAAG
1 GGCAGAAACCAGGAAGACAAGCAAG
*
114122459 GGCA-AAACCAAGGCAGA-AAGCAAG
1 GGCAGAAACC-AGGAAGACAAGCAAG
114122483 GG
1 GG
114122485 AACAAAGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.47, C:0.18, G:0.35, T:0.00
Consensus pattern (25 bp):
GGCAGAAACCAGGAAGACAAGCAAG
Found at i:114125181 original size:20 final size:19
Alignment explanation
Indices: 114125143--114125185 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
114125133 TATTAATTAC
114125143 TAAACTAAATGAAACACAT
1 TAAACTAAATGAAACACAT
* *
114125162 TAAATTAAATTAAGACACAT
1 TAAACTAAATGAA-ACACAT
114125182 TAAA
1 TAAA
114125186 GACTTAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.26
Consensus pattern (19 bp):
TAAACTAAATGAAACACAT
Found at i:114127225 original size:24 final size:23
Alignment explanation
Indices: 114127183--114127228 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
114127173 AGAACTTTTA
* *
114127183 ATCAGGAAGCTCACGAAGAGCCT
1 ATCAAGAAGCTCACAAAGAGCCT
114127206 ATCAAGAATGCTCACAAAGAGCC
1 ATCAAGAA-GCTCACAAAGAGCC
114127229 ATGTAATAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (23 bp):
ATCAAGAAGCTCACAAAGAGCCT
Found at i:114147323 original size:29 final size:31
Alignment explanation
Indices: 114147263--114147323 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
114147253 TGTGTTTTAT
* * *
114147263 TATGGTACTTGTACTTTTATAAAATATTCAA
1 TATGATACGTGTACTTTTATAAAATATCCAA
114147294 TATGATACGTGTAC-TTTA-AAAATATCCAA
1 TATGATACGTGTACTTTTATAAAATATCCAA
114147323 T
1 T
114147324 GTGGTACCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 11 0.41
30 4 0.15
31 12 0.44
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (31 bp):
TATGATACGTGTACTTTTATAAAATATCCAA
Found at i:114147631 original size:21 final size:21
Alignment explanation
Indices: 114147592--114147631 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
114147582 CATTCTAGAC
* *
114147592 TTAACTTTTAAATGGTTTTTA
1 TTAAATTTTAAATGCTTTTTA
*
114147613 TTAAATTTTAATTGCTTTT
1 TTAAATTTTAAATGCTTTT
114147632 GAACTTTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (21 bp):
TTAAATTTTAAATGCTTTTTA
Found at i:114150089 original size:2 final size:2
Alignment explanation
Indices: 114150082--114150114 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
114150072 AGGCAAGCTT
*
114150082 TC TC TC TC TC TC TC TC TC TC TC T- TT TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
114150115 ACTTCATGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
TC
Found at i:114161806 original size:28 final size:29
Alignment explanation
Indices: 114161771--114161828 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
114161761 TATAAAAATA
114161771 TTTTAAAT-TTATCA-GAGTAGGCCGATTT
1 TTTTAAATATTAT-AGGAGTAGGCCGATTT
*
114161799 TTTTAAATAATTATAGGAGTAGGTCGATTT
1 TTTTAAAT-ATTATAGGAGTAGGCCGATTT
114161829 AAGGAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 8 0.31
29 1 0.04
30 17 0.65
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (29 bp):
TTTTAAATATTATAGGAGTAGGCCGATTT
Found at i:114162118 original size:12 final size:12
Alignment explanation
Indices: 114162083--114162110 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
114162073 TTCTATCTAG
114162083 ATTAGAATTTTT
1 ATTAGAATTTTT
114162095 ATTAGAATTTTT
1 ATTAGAATTTTT
114162107 ATTA
1 ATTA
114162111 ATATTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (12 bp):
ATTAGAATTTTT
Found at i:114171834 original size:12 final size:12
Alignment explanation
Indices: 114171806--114171841 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
114171796 GAAAATGAAT
*
114171806 CATTTCTCATTTT
1 CATTTC-CATTTC
114171819 CATTTCCATTTC
1 CATTTCCATTTC
114171831 CATTTCCATTT
1 CATTTCCATTT
114171842 TGAGAAAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (12 bp):
CATTTCCATTTC
Found at i:114171840 original size:18 final size:19
Alignment explanation
Indices: 114171806--114171841 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
114171796 GAAAATGAAT
*
114171806 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTCCATTTC
114171825 CATTTC-CATTTCCATTT
1 CATTTCTCATTTCCATTT
114171842 TGAGAAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (19 bp):
CATTTCTCATTTCCATTTC
Found at i:114173041 original size:9 final size:9
Alignment explanation
Indices: 114173029--114173062 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
114173019 CAAATTATCT
114173029 GAATTAATC
1 GAATTAATC
114173038 GAATTAATC
1 GAATTAATC
114173047 GAATTAA-C
1 GAATTAATC
114173055 TGAATTAA
1 -GAATTAA
114173063 AACTACATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 1 0.04
9 23 0.96
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (9 bp):
GAATTAATC
Found at i:114173843 original size:17 final size:18
Alignment explanation
Indices: 114173811--114173845 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
114173801 CCAAATGAAC
114173811 AAAAATGGATAGAAATGAT
1 AAAAATGGA-AGAAATGAT
114173830 AAAAATGG-AGAAATGA
1 AAAAATGGAAGAAATGA
114173846 GAAACACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (18 bp):
AAAAATGGAAGAAATGAT
Found at i:114174157 original size:14 final size:14
Alignment explanation
Indices: 114174134--114174181 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
114174124 ATCGAATTAT
*
114174134 AAAGTATTGGGTTA
1 AAAGTCTTGGGTTA
114174148 AAAGTCTTGGGTTA
1 AAAGTCTTGGGTTA
114174162 AAAGTCTTGGGTTA
1 AAAGTCTTGGGTTA
114174176 AAAGTC
1 AAAGTC
114174182 GAGGAAGTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (14 bp):
AAAGTCTTGGGTTA
Found at i:114175495 original size:12 final size:12
Alignment explanation
Indices: 114175478--114175509 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
114175468 TTTATGCCTT
114175478 AGAGAATTTTTG
1 AGAGAATTTTTG
114175490 AGAGAATTTTTG
1 AGAGAATTTTTG
114175502 AGAGAATT
1 AGAGAATT
114175510 CTTACTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (12 bp):
AGAGAATTTTTG
Found at i:114178668 original size:49 final size:49
Alignment explanation
Indices: 114178611--114178714 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
114178601 TCAATAAGAG
*
114178611 ATGATTTTGCTTCTATAGTTACTAACACGTCACACTTAATTATCTTTAC
1 ATGATTTTGCTTCTATAGTTACTAACACATCACACTTAATTATCTTTAC
*
114178660 ATGATTTTGCTTCTATAGTTACTAACACATCACATTTAATTATCTTTAC
1 ATGATTTTGCTTCTATAGTTACTAACACATCACACTTAATTATCTTTAC
*
114178709 ACGATT
1 ATGATT
114178715 ACCACAACTA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (49 bp):
ATGATTTTGCTTCTATAGTTACTAACACATCACACTTAATTATCTTTAC
Found at i:114190634 original size:19 final size:22
Alignment explanation
Indices: 114190595--114190634 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
114190585 AGAACCCCAA
114190595 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
114190617 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
114190635 ATGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:114190733 original size:27 final size:28
Alignment explanation
Indices: 114190696--114190835 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 28
114190686 AGCATGGCTG
* **
114190696 CCAGA-ACAGATA-ATGTGACAGAGTTA
1 CCAGATACAGATATATGTGGCAGAGCCA
114190722 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
* *
114190750 CCAGA-ACAAATATATGTCGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
114190777 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
114190804 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
114190831 CCAGA
1 CCAGA
114190836 ACGCTTCCTC
Statistics
Matches: 101, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.05
27 80 0.79
28 16 0.16
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:114192485 original size:26 final size:26
Alignment explanation
Indices: 114192448--114192583 Score: 202
Period size: 26 Copynumber: 5.2 Consensus size: 26
114192438 CATTAAATTC
114192448 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
114192474 TTATCATTAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
114192500 TTATCGTGAAACATTTACCTAACCGA
1 TTATCATGAAACATTTACCTAACCCA
* *
114192526 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
114192552 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
114192578 TTATCA
1 TTATCA
114192584 ATTTGTACCA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 100 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:114201054 original size:25 final size:25
Alignment explanation
Indices: 114201016--114201106 Score: 89
Period size: 25 Copynumber: 3.6 Consensus size: 25
114201006 TCATATACAT
114201016 GTATGCTCATACGAGTTATGAATCG
1 GTATGCTCATACGAGTTATGAATCG
*
114201041 GTATGCTC-TCACGAGCTATGAATCG
1 GTATGCTCAT-ACGAGTTATGAATCG
* * * *
114201066 ATAAGCTCATACGAGCTGA-GAACCG
1 GTATGCTCATACGAG-TTATGAATCG
114201091 GTATGCTC-TCACGAGT
1 GTATGCTCAT-ACGAGT
114201107 CGTAAATCGG
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
24 3 0.06
25 49 0.91
26 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
GTATGCTCATACGAGTTATGAATCG
Found at i:114201115 original size:50 final size:50
Alignment explanation
Indices: 114201020--114201133 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 50
114201010 ATACATGTAT
* *
114201020 GCTCATACGAG-TTATGAATCGGTATGCTCTCACGAGCTATGAATCGATAA
1 GCTCATACGAGCTGATGAACCGGTATGCTCTCACGAGCTA-GAATCGATAA
*
114201070 GCTCATACGAGCTGA-GAACCGGTATGCTCTCACGAGTCGTA-AATCGGTAA
1 GCTCATACGAGCTGATGAACCGGTATGCTCTCACGAG-C-TAGAATCGATAA
* *
114201120 GCTTATTCGAGCTG
1 GCTCATACGAGCTG
114201134 TGGTGTGTCC
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
50 51 0.91
51 3 0.05
52 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (50 bp):
GCTCATACGAGCTGATGAACCGGTATGCTCTCACGAGCTAGAATCGATAA
Found at i:114209088 original size:15 final size:15
Alignment explanation
Indices: 114209068--114209123 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
114209058 GTATCTTGGG
114209068 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
114209083 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
114209098 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
114209113 TTTCTTTATTC
1 TTTCTTTATTC
114209124 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:114211566 original size:46 final size:45
Alignment explanation
Indices: 114211516--114211691 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
114211506 TGGTTGAGTA
114211516 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
114211562 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
114211609 TCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
114211655 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
114211692 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:114215919 original size:16 final size:16
Alignment explanation
Indices: 114215900--114215934 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
114215890 TATGGACTGA
114215900 ATTGAATAATAAAAGT
1 ATTGAATAATAAAAGT
114215916 ATTGAATAATAAAAGT
1 ATTGAATAATAAAAGT
114215932 ATT
1 ATT
114215935 AAATGGATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (16 bp):
ATTGAATAATAAAAGT
Found at i:114216601 original size:12 final size:12
Alignment explanation
Indices: 114216584--114216608 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
114216574 ATAAGAGTAT
114216584 GGAAAAAAAAAA
1 GGAAAAAAAAAA
114216596 GGAAAAAAAAAA
1 GGAAAAAAAAAA
114216608 G
1 G
114216609 TGTTCATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
GGAAAAAAAAAA
Found at i:114218002 original size:40 final size:40
Alignment explanation
Indices: 114217900--114218067 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
114217890 AAATTGAATG
* * * *
114217900 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GGAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAA-TT
* ***
114217940 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* * *
114217980 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTACGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
114218020 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
114218060 ATATCCGG
1 ATATCCGG
114218068 TTATATTCCG
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 4 0.04
40 98 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:114222270 original size:35 final size:35
Alignment explanation
Indices: 114222194--114222324 Score: 108
Period size: 35 Copynumber: 3.7 Consensus size: 35
114222184 ATAGGTAAGT
* * * *
114222194 ATATGTGAGCTTATATTGAACTTGAATATTCGATT
1 ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
* **
114222229 ACATGTGAGTTTATATTGAATTTGTGTATTCGGTC
1 ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
* *
114222264 ATATGTGGAG-TTA-ACTTGAATGTGCATATTCGG-C
1 ATATGT-GAGTTTATA-TTGAATTTGAATATTCGGTC
*
114222298 TATATGTGA-TGTTCTATTGAATTTGAA
1 -ATATGTGAGT-TTATATTGAATTTGAA
114222325 CTATAGGTTA
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
34 4 0.05
35 68 0.89
36 4 0.05
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.43
Consensus pattern (35 bp):
ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
Found at i:114229424 original size:42 final size:42
Alignment explanation
Indices: 114229335--114229439 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
114229325 AGGTTATTAG
* * **
114229335 GATTTCGTATAAGACCATATCTGAGATATGGCCTCGGTATGT
1 GATTTCGTATAAGACCATATCTGAGACATGGCATCAATATGT
*
114229377 GATTTCGTATAAGACCATGTC-GAGGACATGGCATCAATATGAT
1 GATTTCGTATAAGACCATATCTGA-GACATGGCATCAATATG-T
* *
114229420 -ATTTCATGTAAGACCATATC
1 GATTTCGTATAAGACCATATC
114229440 GGGGATATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.04
42 50 0.94
43 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (42 bp):
GATTTCGTATAAGACCATATCTGAGACATGGCATCAATATGT
Found at i:114231956 original size:20 final size:20
Alignment explanation
Indices: 114231916--114231956 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
114231906 AAACAAAAAT
*
114231916 ATTAAAAATATAAAAATTAA
1 ATTAAAAATATAAAAAATAA
114231936 ATTAAAAATA-AATAAAATAA
1 ATTAAAAATATAA-AAAATAA
114231956 A
1 A
114231957 AAATAGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
ATTAAAAATATAAAAAATAA
Found at i:114233937 original size:19 final size:21
Alignment explanation
Indices: 114233906--114233945 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
114233896 ATTATTTCTC
114233906 ATTTATCTAAAATAA-AATTT
1 ATTTATCTAAAATAATAATTT
114233926 ATTTAT-TAAAATAATAATTT
1 ATTTATCTAAAATAATAATTT
114233946 TATAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTATCTAAAATAATAATTT
Found at i:114241861 original size:13 final size:12
Alignment explanation
Indices: 114241838--114241867 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
114241828 AAAAGCTCTA
114241838 TTTAAAT-TTTT
1 TTTAAATATTTT
114241849 TTTAAATATTTT
1 TTTAAATATTTT
114241861 TTTAAAT
1 TTTAAAT
114241868 CAAAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTAAATATTTT
Found at i:114243340 original size:2 final size:2
Alignment explanation
Indices: 114243325--114243357 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
114243315 GATGTTTTTG
114243325 TA TA TA T- TA T- TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
114243358 GATTCATGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:114245844 original size:7 final size:7
Alignment explanation
Indices: 114245832--114245857 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
114245822 TAGTCGATTC
114245832 GTATTTA
1 GTATTTA
114245839 GTATTTA
1 GTATTTA
114245846 GTATTTA
1 GTATTTA
114245853 GTATT
1 GTATT
114245858 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:114246394 original size:30 final size:30
Alignment explanation
Indices: 114246354--114246451 Score: 115
Period size: 30 Copynumber: 3.3 Consensus size: 30
114246344 GATGACGACG
*
114246354 CGGGCTCATCAACAGTACCCACACAATCAC
1 CGGGCCCATCAACAGTACCCACACAATCAC
** *
114246384 CGGGCCCATCAACAGCGCCCATACAATCAC
1 CGGGCCCATCAACAGTACCCACACAATCAC
*** * *
114246414 CAAACCCATCAACAGTTCCCACACAGTCAC
1 CGGGCCCATCAACAGTACCCACACAATCAC
114246444 CGGGCCCA
1 CGGGCCCA
114246452 ACACTTCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.32, C:0.43, G:0.14, T:0.11
Consensus pattern (30 bp):
CGGGCCCATCAACAGTACCCACACAATCAC
Found at i:114246527 original size:18 final size:18
Alignment explanation
Indices: 114246504--114246547 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
114246494 ATGCTAGTTG
* *
114246504 TGTATCCTAGCCCTTTTA
1 TGTATCCTAACCCTTATA
114246522 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
114246540 TGTTTCCT
1 TGTATCCT
114246548 TGTCCCAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.18, C:0.27, G:0.09, T:0.45
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:114249487 original size:24 final size:24
Alignment explanation
Indices: 114249459--114249508 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
114249449 CCACTAGAAG
*
114249459 TTGATGTCATTTTCC-ATTACGTAT
1 TTGATGTCA-TTTCCTAGTACGTAT
*
114249483 TTGATGTTATTTCCTAGTACGTAT
1 TTGATGTCATTTCCTAGTACGTAT
114249507 TT
1 TT
114249509 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.52
Consensus pattern (24 bp):
TTGATGTCATTTCCTAGTACGTAT
Found at i:114250362 original size:126 final size:125
Alignment explanation
Indices: 114250132--114250800 Score: 930
Period size: 126 Copynumber: 5.3 Consensus size: 125
114250122 AATAGGAACT
* * * * *
114250132 ACTGTAGTAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTACATTTGCTGACAGTGCATCCTACT
1 ACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTACT
114250197 TGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTTAGAAACG
66 TGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTTAGAAACG
* * * *
114250258 ACTGTAGAAAAAGAGTGTCCACATGGGAGCTTTTTTTAGTACGTTTGCTGACAGTGCATCCTGCT
1 ACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTACT
* ** * * * *
114250323 TGAAACGTTTTTGACACTATTTGTTCAGAAACATGTTCTCAAAATTATTTTTCAGAAACT
66 TGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTAGAAACG
* * **
114250383 ACTGTAGAAAAAAAAAGTCCACGCGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTACT
1 ACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTACT
* *
114250448 TGAAGCAATTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATACTTTTTTAGAAACG
66 TGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTTAGAAACG
* * *
114250509 ACTGTAGAAAAAGAGCG-CC-CATGTAGGAGTTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
1 ACTGTAGAAAAAGAGAGTCCACATG--GGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTA
* ** * * *
114250572 CTTAAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTCAGAAACT
64 CTTGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTAGAAACG
* **
114250634 ACTGTAGAAAAA-AAAGTCCACGCGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTACT
1 ACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTACT
* *
114250698 TGAAGCAATTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTTAGAAACG
66 TGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTTAGAAACG
* *
114250759 ACTGTAGAAAAAGAGTGTCCACATGGGAGCTTTTTTAAGTAC
1 ACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGTAC
114250801 GTAAGCGTTT
Statistics
Matches: 471, Mismatches: 65, Indels: 14
0.86 0.12 0.03
Matches are distributed among these distances:
124 83 0.18
125 158 0.34
126 230 0.49
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (125 bp):
ACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTACT
TGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTAGAAACG
Done.