Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 367 of 438
Found at i:114459090 original size:16 final size:16
Alignment explanation
Indices: 114459069--114459107 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
114459059 AGTTTATGTT
*
114459069 TATTATATTAATATAA
1 TATTATATTAACATAA
114459085 TATTATATTAACATAA
1 TATTATATTAACATAA
114459101 TAATTAT
1 T-ATTAT
114459108 TAGTTCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TATTATATTAACATAA
Found at i:114460888 original size:13 final size:13
Alignment explanation
Indices: 114460870--114460895 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114460860 TTGTGCATTC
114460870 TTAGTTTAGATAA
1 TTAGTTTAGATAA
114460883 TTAGTTTAGATAA
1 TTAGTTTAGATAA
114460896 AACAAATCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TTAGTTTAGATAA
Found at i:114470135 original size:41 final size:42
Alignment explanation
Indices: 114470090--114470178 Score: 117
Period size: 41 Copynumber: 2.1 Consensus size: 42
114470080 AAGGTTACAT
*
114470090 GACCTGAGATACAAGCGTGTGTCTCAGCCATGAGAGGCA-AC
1 GACCTGAGATACAAGCATGTGTCTCAGCCATGAGAGGCACAC
* * * *
114470131 GACCTAAGATACAAGCATGTGTCTTAGCCGTGTGAGGCACAC
1 GACCTGAGATACAAGCATGTGTCTCAGCCATGAGAGGCACAC
*
114470173 GGCCTG
1 GACCTG
114470179 GCCACATGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 34 0.85
42 6 0.15
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.19
Consensus pattern (42 bp):
GACCTGAGATACAAGCATGTGTCTCAGCCATGAGAGGCACAC
Found at i:114472892 original size:16 final size:16
Alignment explanation
Indices: 114472871--114472901 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
114472861 CTATGCATGC
*
114472871 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
114472887 AAAATACAAAAGACA
1 AAAATACAAAAGACA
114472902 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:114486755 original size:16 final size:16
Alignment explanation
Indices: 114486736--114486767 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
114486726 AATTGTTTTA
114486736 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
114486752 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
114486768 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:114487015 original size:50 final size:50
Alignment explanation
Indices: 114486940--114487334 Score: 398
Period size: 50 Copynumber: 7.9 Consensus size: 50
114486930 ATCGAAGCTC
* * * * *
114486940 TCTGGTACCCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * *
114486990 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * ** *
114487040 TCTGATGCATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * * *
114487092 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
114487141 TCTGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * ** *
114487191 TCTGATACATGTATTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * * ** *
114487243 -CGGGTACGCATAGTAGCCTGCACTCAGTACTACACGTGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
*
114487292 TCTGGTACACGTAGTAGTCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
114487335 TCACAACGAA
Statistics
Matches: 272, Mismatches: 67, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
49 6 0.02
50 197 0.72
51 67 0.25
52 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:114487125 original size:101 final size:101
Alignment explanation
Indices: 114487001--114487182 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
114486991 CTGGTACACG
* * * * * *
114487001 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATGCATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAATAGCCTGCACTT
114487066 AGTACTACACACGTGATCGAAGTTAACGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTAACGGGTACGCA
* * *
114487102 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAATAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAATAGCCTGCACTT
114487167 AGTACTACACACGTGA
66 AGTACTACACACGTGA
114487183 CTTAACCATC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAATAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTAACGGGTACGCA
Found at i:114487209 original size:151 final size:151
Alignment explanation
Indices: 114486943--114487335 Score: 705
Period size: 151 Copynumber: 2.6 Consensus size: 151
114486933 GAAGCTCTCT
* *
114486943 GGTACCCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* *
114487008 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATGCATGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAGCCTACACTTAGTACTA
114487073 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
*
114487094 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAATAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
114487159 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTATTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAGCCTACACTTAGTACTA
114487224 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* * *
114487245 GGTACGCATAGTAGCCTGCACTCAGTACTACACGTGCGACCTATCAATCTGGTACACGTAGTAGT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
114487310 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
114487336 CACAACGAAT
Statistics
Matches: 232, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
151 232 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:114487249 original size:101 final size:101
Alignment explanation
Indices: 114486943--114487333 Score: 270
Period size: 101 Copynumber: 3.9 Consensus size: 101
114486933 GAAGCTCTCT
* * * * * * *
114486943 GGTACCCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAATAGCCTGCACTCAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
* * ** * *
114487008 CTGCACTTAGTACTACACACGTGA-CTTAA-CCATCT
66 CTACACTTAGTACTACACACGTGATC-GAAGTTAACG
* * ** * * * * * * * * * *
114487043 GATGCATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAGTA
1 GGTACACATAATAGCCTGCACTCAGTACTACACACGCGACCTAA--CAATCTGATACACGTAGTA
* * * ** * *
114487107 GCCTGCACTTAGTACTACACATGCGA-CCTA-TCAATCT
64 GCCTACACTTAGTACTACACACGTGATCGAAGTTAA-CG
* * * * * * *
114487144 GGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTATTAGC
1 GGTACACATAATAGCCTGCACTCAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
114487209 CTACACTTAGTACTACACACGTGATCGAAGTTAACG
66 CTACACTTAGTACTACACACGTGATCGAAGTTAACG
* * ** * * *
114487245 GGTACGCATAGTAGCCTGCACTCAGTACTACACGTGCGACCTATCAATCTGGTACACGTAGTAGT
1 GGTACACATAATAGCCTGCACTCAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
*
114487310 CTGCACTTAGTACTACACACGTGA
66 CTACACTTAGTACTACACACGTGA
114487334 CTCACAACGA
Statistics
Matches: 227, Mismatches: 58, Indels: 11
0.77 0.20 0.04
Matches are distributed among these distances:
99 1 0.00
100 68 0.30
101 153 0.67
102 5 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
GGTACACATAATAGCCTGCACTCAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
CTACACTTAGTACTACACACGTGATCGAAGTTAACG
Found at i:114487711 original size:19 final size:20
Alignment explanation
Indices: 114487683--114487729 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
114487673 AAGAACAGGT
114487683 TATATCATCAAAATACTCACA
1 TATAT-ATCAAAATACTCACA
* *
114487704 TA-ATATCAAATTATTCACA
1 TATATATCAAAATACTCACA
114487723 TATATAT
1 TATATAT
114487730 ACTTAAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATACTCACA
Found at i:114489312 original size:24 final size:23
Alignment explanation
Indices: 114489266--114489312 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
114489256 TAAACCCTAC
* *
114489266 ATGGCGTGTAGGGATGGTCGAAG
1 ATGGAGTGTAGGGATGGGCGAAG
*
114489289 ATGGAGTGTAGAGGATGGGGGAAG
1 ATGGAGTGTAG-GGATGGGCGAAG
114489313 GATATTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.26, C:0.04, G:0.51, T:0.19
Consensus pattern (23 bp):
ATGGAGTGTAGGGATGGGCGAAG
Found at i:114494821 original size:47 final size:47
Alignment explanation
Indices: 114494758--114494961 Score: 345
Period size: 47 Copynumber: 4.3 Consensus size: 47
114494748 CCCTTCGGGA
* *
114494758 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
114494805 CTTATCACATATATACACTTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACAC-TTTCACATTCATCACATTGGCCATTCGGC
* *
114494853 CTTATCTCATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
114494900 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
114494947 CTTATCACATATATA
1 CTTATCACATATATA
114494962 TATCTTGTAC
Statistics
Matches: 146, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
47 103 0.71
48 43 0.29
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.36
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:114497321 original size:50 final size:50
Alignment explanation
Indices: 114497149--114497472 Score: 238
Period size: 50 Copynumber: 6.4 Consensus size: 50
114497139 AGGGGTGTCA
* * * * * * * *
114497149 CACTTAGTACAATACACGTGACTTAACCATCTGATACATGTAGTAGCCTG
1 CACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTG
* * ** * * ***
114497199 CACTTAGTACAACACACGTGATCGAAGTTAA-CGGGTACGTATAGTAGCCTG
1 CACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACGTAGTAGCCTG
** * *
114497250 CACTTAGTACTGTACATGTGACCTATCAATCTGGTACACGTAGCAGTCTG
1 CACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTG
* * * * * * * *
114497300 CACTTAATACTACACACGTGACTTAACCATCTGATACACGTATTAGCCTA
1 CACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTG
** * * ** *
114497350 CACTTAGTACTACACATGTGATCGAAGTTAA-CGGGTAGGCATAGTAGCCTG
1 CACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACGTAGTAGCCTG
* *
114497401 CACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTG
1 CACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTG
* *
114497451 CACTTAGAACTACACAAGTGAC
1 CACTTAGTACTACACATGTGAC
114497473 TCACAACAAA
Statistics
Matches: 207, Mismatches: 61, Indels: 12
0.74 0.22 0.04
Matches are distributed among these distances:
49 6 0.03
50 129 0.62
51 70 0.34
52 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (50 bp):
CACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTG
Found at i:114497424 original size:151 final size:151
Alignment explanation
Indices: 114497162--114497473 Score: 482
Period size: 151 Copynumber: 2.1 Consensus size: 151
114497152 TTAGTACAAT
* *
114497162 ACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACTTAGTACAACACACGTGATCGAAGT
1 ACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACAACACACGTGATCGAAGT
* ** * *
114497227 TAACGGGTACGTATAGTAGCCTGCACTTAGTACTGTACATGTGACCTATCAATCTGGTACACGTA
66 TAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTA
*
114497292 GCAGTCTGCACTTA-ATACTAC
131 GCAGCCTGCACTTAGA-ACTAC
* * *
114497313 ACACGTGACTTAACCATCTGATACACGTATTAGCCTACACTTAGTACTACACATGTGATCGAAGT
1 ACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACAACACACGTGATCGAAGT
*
114497378 TAACGGGTAGGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTA
66 TAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTA
*
114497443 GTAGCCTGCACTTAGAACTAC
131 GCAGCCTGCACTTAGAACTAC
*
114497464 ACAAGTGACT
1 ACACGTGACT
114497474 CACAACAAAT
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
151 145 0.99
152 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (151 bp):
ACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACAACACACGTGATCGAAGT
TAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTA
GCAGCCTGCACTTAGAACTAC
Found at i:114497849 original size:19 final size:20
Alignment explanation
Indices: 114497821--114497867 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
114497811 AAGAACATGT
114497821 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
114497842 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
114497861 TATATAT
1 TATATAT
114497868 ACTTACAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:114500620 original size:31 final size:33
Alignment explanation
Indices: 114500585--114500657 Score: 118
Period size: 32 Copynumber: 2.3 Consensus size: 33
114500575 CGTTTTTAGG
114500585 AATTTTAA-T-GTTTTTGTGATCCTTGTAGTTT
1 AATTTTAACTAGTTTTTGTGATCCTTGTAGTTT
114500616 AA-TTTAACTAGTTTTTGTGATCCTTGTAGTTT
1 AATTTTAACTAGTTTTTGTGATCCTTGTAGTTT
114500648 AA-TTTAACTA
1 AATTTTAACTA
114500658 ACTCGGGTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
30 5 0.12
31 3 0.08
32 32 0.80
ACGTcount: A:0.25, C:0.08, G:0.14, T:0.53
Consensus pattern (33 bp):
AATTTTAACTAGTTTTTGTGATCCTTGTAGTTT
Found at i:114500631 original size:32 final size:32
Alignment explanation
Indices: 114500594--114500657 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
114500584 GAATTTTAAT
114500594 GTTTTTGTGATCCTTGTAGTTTAATTTAACTA
1 GTTTTTGTGATCCTTGTAGTTTAATTTAACTA
114500626 GTTTTTGTGATCCTTGTAGTTTAATTTAACTA
1 GTTTTTGTGATCCTTGTAGTTTAATTTAACTA
114500658 ACTCGGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.53
Consensus pattern (32 bp):
GTTTTTGTGATCCTTGTAGTTTAATTTAACTA
Found at i:114505278 original size:40 final size:39
Alignment explanation
Indices: 114505234--114505457 Score: 281
Period size: 40 Copynumber: 5.7 Consensus size: 39
114505224 GCTACTTGCT
*
114505234 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTCACTCGCA
* * *
114505274 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTCACTCGCA
* *
114505313 CAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
1 CAAATGCCTTCGGGACTTAGCC-CGGTATAGTCACTCGCA
* * *
114505353 CAAATGCCTTCGGGACTTAGCCCGAATATTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GTATAGTCACTCGCA
* * *
114505393 CAAATGCCTTAGGG-CTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTCACTCGCA
114505432 CAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
114505458 TATCATCCGA
Statistics
Matches: 158, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 65 0.41
40 89 0.56
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTCACTCGCA
Found at i:114505332 original size:79 final size:80
Alignment explanation
Indices: 114505201--114505456 Score: 301
Period size: 79 Copynumber: 3.2 Consensus size: 80
114505191 AAACCAAGTA
* * * *
114505201 CCTTCGGAATTTAG-CCGG-ATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGAATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TAT
*
114505263 AGTAACTCGCACAAATG
64 AGTCACTCGCACAAATG
* * * *
114505280 CCTTCGGG-CTTAGCCCGGAAT-TAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCAAGATATA
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCC-CGGTATA
114505343 GTCACTCGCACAAATG
65 GTCACTCGCACAAATG
* * * *
114505359 CCTTCGGGACTTAGCCC-GAATATTGTAACTCGCACAAATGCCTTAGGG-CTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TA
*
114505422 GTCACTAGCACAAATG
65 GTCACTCGCACAAATG
114505438 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
114505457 TTATCATCCG
Statistics
Matches: 153, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
78 7 0.05
79 113 0.74
80 33 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAG
TCACTCGCACAAATG
Found at i:114505429 original size:119 final size:119
Alignment explanation
Indices: 114505234--114505453 Score: 395
Period size: 119 Copynumber: 1.8 Consensus size: 119
114505224 GCTACTTGCT
** *
114505234 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
*
114505299 ATTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
66 ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
*
114505353 CAAATGCCTTCGGGACTTAGCCCGAATATTGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
114505418 ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
66 ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
114505454 CGGTTATCAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 96 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
Found at i:114513277 original size:40 final size:39
Alignment explanation
Indices: 114513233--114513456 Score: 281
Period size: 40 Copynumber: 5.7 Consensus size: 39
114513223 GCTACTTGCT
*
114513233 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTCACTCGCA
* * *
114513273 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTCACTCGCA
* *
114513312 CAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
1 CAAATGCCTTCGGGACTTAGCC-CGGTATAGTCACTCGCA
* * *
114513352 CAAATGCCTTCGGGACTTAGCCCGAATATTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GTATAGTCACTCGCA
* * *
114513392 CAAATGCCTTAGGG-CTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTCACTCGCA
114513431 CAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
114513457 TATCATCCGA
Statistics
Matches: 158, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 65 0.41
40 89 0.56
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTCACTCGCA
Found at i:114513331 original size:79 final size:80
Alignment explanation
Indices: 114513200--114513455 Score: 301
Period size: 79 Copynumber: 3.2 Consensus size: 80
114513190 AAACCAAGTA
* * * *
114513200 CCTTCGGAATTTAG-CCGG-ATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGAATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TAT
*
114513262 AGTAACTCGCACAAATG
64 AGTCACTCGCACAAATG
* * * *
114513279 CCTTCGGG-CTTAGCCCGGAAT-TAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCAAGATATA
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCC-CGGTATA
114513342 GTCACTCGCACAAATG
65 GTCACTCGCACAAATG
* * * *
114513358 CCTTCGGGACTTAGCCC-GAATATTGTAACTCGCACAAATGCCTTAGGG-CTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TA
*
114513421 GTCACTAGCACAAATG
65 GTCACTCGCACAAATG
114513437 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
114513456 TTATCATCCG
Statistics
Matches: 153, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
78 7 0.05
79 113 0.74
80 33 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAG
TCACTCGCACAAATG
Found at i:114513428 original size:119 final size:119
Alignment explanation
Indices: 114513233--114513452 Score: 395
Period size: 119 Copynumber: 1.8 Consensus size: 119
114513223 GCTACTTGCT
** *
114513233 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
*
114513298 ATTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
66 ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
*
114513352 CAAATGCCTTCGGGACTTAGCCCGAATATTGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
114513417 ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
66 ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
114513453 CGGTTATCAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 96 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTAGGGCTTAGCCCGGA
ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAAGATATAGTCACTCGCA
Found at i:114517953 original size:71 final size:71
Alignment explanation
Indices: 114517865--114518028 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
114517855 GAGATGTATC
114517865 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114517930 AGGACA
66 AGGACA
114517936 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
114518001 CGGACA
66 AGGACA
114518007 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
114518029 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:114525487 original size:71 final size:71
Alignment explanation
Indices: 114525399--114525562 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
114525389 GAGATGTATC
114525399 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114525464 AGGACA
66 AGGACA
114525470 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
114525535 CGGACA
66 AGGACA
114525541 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
114525563 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:114531621 original size:30 final size:32
Alignment explanation
Indices: 114531570--114531641 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 32
114531560 TCAAAACATT
*
114531570 GATGTGAAAAGAAAGTGCAAGAAAAC-AATAAA
1 GATG-GAAAAGAAAGAGCAAGAAAACTAATAAA
*
114531602 GATGGAAAA-AAAGAGCAAGAAAACTATTAAA
1 GATGGAAAAGAAAGAGCAAGAAAACTAATAAA
114531633 GCATGGAAA
1 G-ATGGAAA
114531642 CCCAATTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
30 14 0.39
31 11 0.31
32 11 0.31
ACGTcount: A:0.58, C:0.07, G:0.22, T:0.12
Consensus pattern (32 bp):
GATGGAAAAGAAAGAGCAAGAAAACTAATAAA
Found at i:114534301 original size:23 final size:23
Alignment explanation
Indices: 114534270--114534313 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
114534260 GAATTACTTT
*
114534270 AATATTGCATTGTTATTTATGTA
1 AATAATGCATTGTTATTTATGTA
114534293 AATAATGCATTGTTATTTATG
1 AATAATGCATTGTTATTTATG
114534314 CTTTAATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.50
Consensus pattern (23 bp):
AATAATGCATTGTTATTTATGTA
Found at i:114538242 original size:21 final size:21
Alignment explanation
Indices: 114538201--114538243 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
114538191 GCTGATTTTT
* *
114538201 TTTTTCTTTTTGTTTTGATTC
1 TTTTTCTTTTAGGTTTGATTC
114538222 TTTTTCTTTTCAGGTTT-ATTC
1 TTTTTCTTTT-AGGTTTGATTC
114538243 T
1 T
114538244 GTTAAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (21 bp):
TTTTTCTTTTAGGTTTGATTC
Found at i:114543720 original size:21 final size:21
Alignment explanation
Indices: 114543696--114543748 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
114543686 TATTAATTAC
*
114543696 AAATATTTAATGATTATA-TTT
1 AAATATTTAAT-AATATAGTTT
114543717 AAATATTTAA-AATATAGTTT
1 AAATATTTAATAATATAGTTT
114543737 AAATATTCTAAT
1 AAATATT-TAAT
114543749 TAAATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.18
20 10 0.36
21 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (21 bp):
AAATATTTAATAATATAGTTT
Found at i:114543739 original size:20 final size:20
Alignment explanation
Indices: 114543696--114543743 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
114543686 TATTAATTAC
*
114543696 AAATATTTAATGATTATATTT
1 AAATATTTAA-GAATATATTT
114543717 AAATATTTAA-AATATAGTTT
1 AAATATTTAAGAATATA-TTT
114543737 AAATATT
1 AAATATT
114543744 CTAATTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 5 0.20
20 10 0.40
21 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (20 bp):
AAATATTTAAGAATATATTT
Found at i:114543802 original size:30 final size:30
Alignment explanation
Indices: 114543763--114543819 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
114543753 TTTTATAAAT
114543763 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
114543793 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
114543820 AATAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:114548254 original size:224 final size:223
Alignment explanation
Indices: 114547804--114548250 Score: 824
Period size: 222 Copynumber: 2.0 Consensus size: 223
114547794 TATGGCTTTG
*
114547804 TAACACCCCTAACCTGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
1 TAACACCCCTAACCCGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
* *
114547869 ATTTATAGATTAATCGAAACATTACTATTCACTTTTTGAAATCATATATATATATAACGACCTTT
66 ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAATCA-ATATATATATAACAACCTTT
114547934 ATTTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAA
130 ATTTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAA
*
114547999 AATTTTTCACTTAATTTTTTAATTTTTTT
195 AAATTTTCACTTAATTTTTTAATTTTTTT
114548028 TAACACCCCTAACCCGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
1 TAACACCCCTAACCCGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
114548093 ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAATC-ATATATATATAACAACCTTTA
66 ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAATCAATATATATATAACAACCTTTA
*
114548157 TTTGGGCCCTCGAAGCCTAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAA
131 TTTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAA
*
114548222 AATTTTCGCTTAATTTTTTAATTTTTTT
196 AATTTTCACTTAATTTTTTAATTTTTTT
114548250 T
1 T
114548251 TTAAATTTTA
Statistics
Matches: 217, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
222 111 0.51
224 106 0.49
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (223 bp):
TAACACCCCTAACCCGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAATCAATATATATATAACAACCTTTA
TTTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAA
AATTTTCACTTAATTTTTTAATTTTTTT
Found at i:114553973 original size:30 final size:30
Alignment explanation
Indices: 114553937--114553999 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
114553927 ACTTATTTTA
*
114553937 TTGTTAATTTTTTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAGAGGCAT
*
114553967 TTGTTAATTTTGTTATTATTTTAGAGGTAT
1 TTGTTAATTTTGTTATTATTTTAGAGGCAT
114553997 TTG
1 TTG
114554000 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAGGCAT
Found at i:114557833 original size:46 final size:46
Alignment explanation
Indices: 114557700--114557919 Score: 146
Period size: 46 Copynumber: 4.7 Consensus size: 46
114557690 ACATATTTTT
* * *
114557700 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATCTAGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCG-AG
* * *
114557746 GCCGATGCATGTCCCAGACATATCTTACAC-AGGC-TTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTA-GCACT-CATCTCGAG
* * *
114557792 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAG
** * * * * * * *
114557838 ATCTATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAG
* *
114557886 GCCGATGCATGTCCCAAACATGTCTTACAGTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
114557920 TCACAGCAAG
Statistics
Matches: 135, Mismatches: 29, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
44 8 0.06
45 15 0.11
46 65 0.48
47 27 0.20
48 19 0.14
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAG
Found at i:114566145 original size:37 final size:37
Alignment explanation
Indices: 114566061--114566257 Score: 145
Period size: 37 Copynumber: 5.3 Consensus size: 37
114566051 AGTTCGGTAG
**
114566061 TTCAGTATACTCAGTAGATAATGCTC-GATTGAGCCTT-A
1 TTCAGTATA-TCAGTAGATTTTGCTCAG-TTGAG-CTTCA
* * * * *
114566099 TTTTAGTATATCCGTATATCTCGCTCAGTTGAGCTCTC-
1 -TTCAGTATATCAGTAGATTTTGCTCAGTTGAGCT-TCA
*
114566137 TTCAGTATATCTGTAGATTTTGCTC-GTTTGAGCTTCA
1 TTCAGTATATCAGTAGATTTTGCTCAG-TTGAGCTTCA
*
114566174 TTCAGTATATCAGTAGATTTTGCTCATTTGAGCTTCA
1 TTCAGTATATCAGTAGATTTTGCTCAGTTGAGCTTCA
* * * * *
114566211 TTTAATATATCGGTA-AGGTTTGCT-TGTTTGAGCTTCA
1 TTCAGTATATCAGTAGA-TTTTGCTCAG-TTGAGCTTCA
*
114566248 TTTAGTATAT
1 TTCAGTATAT
114566258 GACGTCATAT
Statistics
Matches: 130, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
36 4 0.03
37 100 0.77
38 17 0.13
39 9 0.07
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (37 bp):
TTCAGTATATCAGTAGATTTTGCTCAGTTGAGCTTCA
Found at i:114566183 original size:74 final size:74
Alignment explanation
Indices: 114566061--114566257 Score: 193
Period size: 74 Copynumber: 2.6 Consensus size: 74
114566051 AGTTCGGTAG
** * * *
114566061 TTCAGTATACTCAGTAGATAATGCTCGATTGAGCCTT-ATTTTAGTATATCCGTATATCTCGCTC
1 TTCAGTATA-TCAGTAGATTTTGCTCGTTTGAG-CTTCA-TTTAGTATATCAGTAGATCTCGCTC
114566125 AGTTGAGCTCTC-
63 AGTTGAGCT-TCA
* * * * *
114566137 TTCAGTATATCTGTAGATTTTGCTCGTTTGAGCTTCATTCAGTATATCAGTAGATTTTGCTCATT
1 TTCAGTATATCAGTAGATTTTGCTCGTTTGAGCTTCATTTAGTATATCAGTAGATCTCGCTCAGT
114566202 TGAGCTTCA
66 TGAGCTTCA
* * * * *
114566211 TTTAATATATCGGTA-AGGTTTGCTTGTTTGAGCTTCATTTAGTATAT
1 TTCAGTATATCAGTAGA-TTTTGCTCGTTTGAGCTTCATTTAGTATAT
114566258 GACGTCATAT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
73 3 0.03
74 70 0.69
75 20 0.20
76 9 0.09
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (74 bp):
TTCAGTATATCAGTAGATTTTGCTCGTTTGAGCTTCATTTAGTATATCAGTAGATCTCGCTCAGT
TGAGCTTCA
Found at i:114568272 original size:50 final size:50
Alignment explanation
Indices: 114568154--114568448 Score: 256
Period size: 50 Copynumber: 5.9 Consensus size: 50
114568144 CTTCGCCCCT
* * * * *
114568154 GCATGTGTAGTACTATGTGCAAGCTACTATGTGT-TTAAGAAAGTTTTAGGTC
1 GCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAG--TTAGGTC
*
114568206 ATC-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTC
1 -GCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTC
* * * * * * * * *
114568256 GCATGTGTAGTACTAAGTTCAGGCTATTATGCGTACTTGACATCTTCGATC
1 GCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATA-GTTAGGTC
* * * * *
114568307 ACGTATGTAGTACTAAGTGCAGGCTACTACATGTA-TCAGATGGTTAGGTC
1 GCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAGTTAGGTC
* * ** *
114568357 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTC
1 GCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTC
* **
114568406 GCATGTGTAGTACTAAGTGCAGGCTACTATGCATACTAGATAG
1 GCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAG
114568449 CTTCGGTTAC
Statistics
Matches: 194, Mismatches: 43, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
49 40 0.21
50 85 0.44
51 34 0.18
52 33 0.17
53 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
GCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTC
Found at i:114576169 original size:46 final size:46
Alignment explanation
Indices: 114576098--114576191 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
114576088 TTTTTATCCC
* *
114576098 TTGAACGTGTAGGCCAATTTGTTTCTATAATATTTAAATTAATTAA
1 TTGAACGTGTAAGCCAATTTATTTCTATAATATTTAAATTAATTAA
*
114576144 TTGAACGTGTAAGTCAATTTATTTCTATAATATTTAAATTAATTAA
1 TTGAACGTGTAAGCCAATTTATTTCTATAATATTTAAATTAATTAA
114576190 TT
1 TT
114576192 TAATCTCCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.46
Consensus pattern (46 bp):
TTGAACGTGTAAGCCAATTTATTTCTATAATATTTAAATTAATTAA
Found at i:114576733 original size:30 final size:30
Alignment explanation
Indices: 114576676--114576733 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
114576666 TTGATGTTTT
*
114576676 GAAATTTAAATTTTCAATATTGAAAAAAAA
1 GAAATTTAAATTTTCAAGATTGAAAAAAAA
114576706 GAAATTTAGAATTTTCAACGA-TGAAAAA
1 GAAATTTA-AATTTTCAA-GATTGAAAAA
114576734 CAAGTTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 8 0.32
31 16 0.64
32 1 0.04
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.31
Consensus pattern (30 bp):
GAAATTTAAATTTTCAAGATTGAAAAAAAA
Found at i:114583441 original size:138 final size:138
Alignment explanation
Indices: 114583193--114583470 Score: 538
Period size: 138 Copynumber: 2.0 Consensus size: 138
114583183 CACGTCTTCG
*
114583193 TAAGGTGCATGCTTTTAACAGCAAGTAGAACATCATCGGCACAGACCTCCTAAACCTTAAACCCT
1 TAAGGTGCATGCTTTTAACAGCAAGTAGAACATCATCGGCACAGACCTCCTAAACCCTAAACCCT
114583258 AAAACCCAATTCATATAAGAATTAATACACCTACTAACACCTGAAAAAATGTGAGATATATCAAT
66 AAAACCCAATTCATATAAGAATTAATACACCTACTAACACCTGAAAAAATGTGAGATATATCAAT
114583323 CCTCCCTT
131 CCTCCCTT
114583331 TAAGGTGCATGCTTTTAACAGCAAGTAGAACATCATCGGCACAGACCTCCTAAACCCTAAACCCT
1 TAAGGTGCATGCTTTTAACAGCAAGTAGAACATCATCGGCACAGACCTCCTAAACCCTAAACCCT
*
114583396 AAAACCCAATTCATATAAGAATTAATACACCTACTAACACTTGAAAAAATGTGAGATATATCAAT
66 AAAACCCAATTCATATAAGAATTAATACACCTACTAACACCTGAAAAAATGTGAGATATATCAAT
114583461 CCTCCCTT
131 CCTCCCTT
114583469 TA
1 TA
114583471 CTAGTAAACA
Statistics
Matches: 138, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 138 1.00
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (138 bp):
TAAGGTGCATGCTTTTAACAGCAAGTAGAACATCATCGGCACAGACCTCCTAAACCCTAAACCCT
AAAACCCAATTCATATAAGAATTAATACACCTACTAACACCTGAAAAAATGTGAGATATATCAAT
CCTCCCTT
Found at i:114586992 original size:22 final size:23
Alignment explanation
Indices: 114586940--114586992 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
114586930 TCAACATTAT
* * *
114586940 GGACTAAATCAAACCAAATTACG
1 GGACAAAATCAAACAAAAATACG
*
114586963 GGACAAAATCAAACAAAAATAGG
1 GGACAAAATCAAACAAAAATACG
114586986 GGA-AAAA
1 GGACAAAA
114586993 GTTAAAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (23 bp):
GGACAAAATCAAACAAAAATACG
Found at i:114591444 original size:35 final size:35
Alignment explanation
Indices: 114591377--114591544 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
114591367 TCCTCATTGA
*** *
114591377 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
114591413 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
114591453 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
114591488 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
114591523 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
114591545 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:114591503 original size:75 final size:73
Alignment explanation
Indices: 114591372--114591544 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
114591362 GGTTTTCCTC
*** * * **
114591372 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
114591437 TCAGTATGG
65 TCAGTATGG
*
114591446 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
114591510 ACTCAGTATGG
63 ACTCAGTATGG
114591521 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
114591545 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:114601894 original size:16 final size:16
Alignment explanation
Indices: 114601873--114601905 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
114601863 TAGCATAAAT
114601873 AACAGT-CTTCTGAGAC
1 AACAGTCCTT-TGAGAC
114601889 AACAGTCCTTTGAGAC
1 AACAGTCCTTTGAGAC
114601905 A
1 A
114601906 TTTCTGCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (16 bp):
AACAGTCCTTTGAGAC
Found at i:114604480 original size:11 final size:12
Alignment explanation
Indices: 114604460--114604484 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
114604450 ATCGACGACC
114604460 AAAACAAAAAAA
1 AAAACAAAAAAA
114604472 AAAACAAAAAAA
1 AAAACAAAAAAA
114604484 A
1 A
114604485 TTAAAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAA
Found at i:114613709 original size:41 final size:40
Alignment explanation
Indices: 114613629--114613788 Score: 223
Period size: 40 Copynumber: 4.0 Consensus size: 40
114613619 AAAATCGAAT
* * *
114613629 AGATAGAGTATTAGCGGCATTTTTCAA-AAAGCGCAGCTAA
1 AGATCGAGTATTAGCGGCGTTTTT-AAGAAAGCGCCGCTAA
*
114613669 AGATGGAGTATTAGCGGCGTTTTTTAAGAAAGCGCCGCTAA
1 AGATCGAGTATTAGCGGCG-TTTTTAAGAAAGCGCCGCTAA
* **
114613710 AGATCGAGAATTAGCGGCGTTTTTAAGAAAGCGCTACTAA
1 AGATCGAGTATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
*
114613750 AGATCGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTA
1 AGATCGAGTATTAGCGGCGTTTTTAAGAAAGCGCCGCTA
114613789 TAGGCGACGC
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 74 0.69
41 34 0.31
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (40 bp):
AGATCGAGTATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
Found at i:114613773 original size:81 final size:80
Alignment explanation
Indices: 114613629--114613788 Score: 234
Period size: 81 Copynumber: 2.0 Consensus size: 80
114613619 AAAATCGAAT
* * *
114613629 AGATAGAGTATTAGCGGCATTTTTCAAAAAGCGCAGCTAAAGATGGAGTATTAGCGGCGTTTTTT
1 AGATAGAGAATTAGCGGCATTTTTCAAAAAGCGCAGCTAAAGATCGAGCATTAGCGGCG-TTTTT
114613694 AAGAAAGCGCCGCTAA
65 AAGAAAGCGCCGCTAA
* *
114613710 AGATCGAGAATTAGCGGCGTTTTT-AAGAAAGCGCTA-CTAAAGATCGAGCATTAGCGGCGTTTT
1 AGATAGAGAATTAGCGGCATTTTTCAA-AAAGCGC-AGCTAAAGATCGAGCATTAGCGGCGTTTT
114613773 TAAGAAAGCGCCGCTA
64 TAAGAAAGCGCCGCTA
114613789 TAGGCGACGC
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
80 22 0.31
81 49 0.68
82 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (80 bp):
AGATAGAGAATTAGCGGCATTTTTCAAAAAGCGCAGCTAAAGATCGAGCATTAGCGGCGTTTTTA
AGAAAGCGCCGCTAA
Found at i:114614727 original size:21 final size:21
Alignment explanation
Indices: 114614711--114614750 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
114614701 CTTAAACCGT
114614711 AAACCAT-AAACCCTAAATCCA
1 AAACCATAAAACCCTAAA-CCA
*
114614732 AAACCATAAAACCTTAAAC
1 AAACCATAAAACCCTAAAC
114614751 TATAGACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (21 bp):
AAACCATAAAACCCTAAACCA
Found at i:114615108 original size:3 final size:3
Alignment explanation
Indices: 114615094--114615137 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
114615084 ATTAACAGTA
*
114615094 AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
114615138 AAGAGAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:114615154 original size:16 final size:16
Alignment explanation
Indices: 114615133--114615166 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
114615123 TAATAATAAT
114615133 AATAAAAGAGAAAAAA
1 AATAAAAGAGAAAAAA
114615149 AATAAAAGAGAAAAAA
1 AATAAAAGAGAAAAAA
114615165 AA
1 AA
114615167 GGAATGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AATAAAAGAGAAAAAA
Found at i:114618746 original size:14 final size:14
Alignment explanation
Indices: 114618727--114618770 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
114618717 ATTCTTTTTT
114618727 TAATGAATTTAATC
1 TAATGAATTTAATC
* *
114618741 TAATGAATTT-TTT
1 TAATGAATTTAATC
114618754 TAATGAATTTAATC
1 TAATGAATTTAATC
114618768 TAA
1 TAA
114618771 CGGATTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.48
Consensus pattern (14 bp):
TAATGAATTTAATC
Found at i:114618759 original size:13 final size:13
Alignment explanation
Indices: 114618721--114618763 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
114618711 ATTGTTATTC
114618721 TTTTTTTAATGAA
1 TTTTTTTAATGAA
* *
114618734 TTTAATCTAATGAA
1 TTT-TTTTAATGAA
114618748 TTTTTTTAATGAA
1 TTTTTTTAATGAA
114618761 TTT
1 TTT
114618764 AATCTAACGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (13 bp):
TTTTTTTAATGAA
Found at i:114618785 original size:33 final size:33
Alignment explanation
Indices: 114618683--114618809 Score: 140
Period size: 33 Copynumber: 3.9 Consensus size: 33
114618673 TTTCTTTGTG
* *
114618683 ATTTTTTTAACGAATTTAATCTTTATGGATTGTTATT
1 ATTTTTTTAATGAATTTAATC-TAATGGA---TTATT
*
114618720 CTTTTTTTAATGAATTTAATCTAAT-G---A--
1 ATTTTTTTAATGAATTTAATCTAATGGATTATT
*
114618747 ATTTTTTTAATGAATTTAATCTAACGGATTATT
1 ATTTTTTTAATGAATTTAATCTAATGGATTATT
114618780 ATTTTTTTAATGAATTTAATCTAATGGATT
1 ATTTTTTTAATGAATTTAATCTAATGGATT
114618810 GCTATTCTTT
Statistics
Matches: 78, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
27 23 0.29
28 1 0.01
29 1 0.01
31 1 0.01
33 29 0.37
35 1 0.01
36 3 0.04
37 19 0.24
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (33 bp):
ATTTTTTTAATGAATTTAATCTAATGGATTATT
Found at i:114618796 original size:60 final size:62
Alignment explanation
Indices: 114618683--114618805 Score: 178
Period size: 60 Copynumber: 2.0 Consensus size: 62
114618673 TTTCTTTGTG
* * *
114618683 ATTTTTTTAACGAATTTAATCTTTATGGATTGTTATTCTTTTTTTAATGAATTTAATCTAATGA
1 ATTTTTTTAACGAATTTAATCTTAACGGA-T-TTATTATTTTTTTAATGAATTTAATCTAATGA
*
114618747 ATTTTTTTAATGAATTTAATC-TAACGGA-TTATTATTTTTTTAATGAATTTAATCTAATG
1 ATTTTTTTAACGAATTTAATCTTAACGGATTTATTATTTTTTTAATGAATTTAATCTAATG
114618806 GATTGCTATT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
60 30 0.55
63 5 0.09
64 20 0.36
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.54
Consensus pattern (62 bp):
ATTTTTTTAACGAATTTAATCTTAACGGATTTATTATTTTTTTAATGAATTTAATCTAATGA
Found at i:114619496 original size:43 final size:42
Alignment explanation
Indices: 114619367--114619564 Score: 168
Period size: 43 Copynumber: 4.7 Consensus size: 42
114619357 ATAATATTTT
* * * *
114619367 TAAAGGTCAT-GTTTTTAGCGGCGTTTGTAGAAAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGACGTTTTTGGAAAAGCGCCGC
* ** * * * *
114619408 TAAAGATC-TAAT-TTATAGTGGCGTTTGTGATAAAAGCGCCGC
1 TAAAGGTCATGGTCTT-TAGCGACGTTTTTG-GAAAAGCGCCGC
* * **
114619450 TAAAGGTGATGGTCTTTAACGACGTTTTTGGACAAAGCGCTAC
1 TAAAGGTCATGGTCTTTAGCGACGTTTTTGGA-AAAGCGCCGC
* * * *
114619493 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGTGCCGT
1 TAAAGGTCATGGTCTTTAGCGACGTTT-TTGGAAAAGCGCCGC
114619536 TAAAGGTCATGGTCTTTAGCGACGTTTTT
1 TAAAGGTCATGGTCTTTAGCGACGTTTTT
114619565 TTTAAATAAA
Statistics
Matches: 124, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
40 3 0.02
41 20 0.16
42 19 0.15
43 76 0.61
44 6 0.05
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (42 bp):
TAAAGGTCATGGTCTTTAGCGACGTTTTTGGAAAAGCGCCGC
Found at i:114625400 original size:17 final size:17
Alignment explanation
Indices: 114625373--114625427 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
114625363 CCCAACAGAT
*
114625373 TATTAAAATTACTAAAA
1 TATTTAAATTACTAAAA
*
114625390 -ATTTGAAATTATTAAAA
1 TATTT-AAATTACTAAAA
* *
114625407 TATTTAAATTAATCAAA
1 TATTTAAATTACTAAAA
114625424 TATT
1 TATT
114625428 ATTTTTGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 3 0.09
17 25 0.78
18 4 0.12
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (17 bp):
TATTTAAATTACTAAAA
Found at i:114629987 original size:29 final size:29
Alignment explanation
Indices: 114629945--114630002 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
114629935 TTTGCACCAC
114629945 ATATTACGTGGAATGCTCGATCAGCATTT
1 ATATTACGTGGAATGCTCGATCAGCATTT
114629974 ATATTACGTGGAATGCTCGATCAGCATTT
1 ATATTACGTGGAATGCTCGATCAGCATTT
114630003 TCTGAGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (29 bp):
ATATTACGTGGAATGCTCGATCAGCATTT
Found at i:114641078 original size:146 final size:146
Alignment explanation
Indices: 114640814--114641106 Score: 586
Period size: 146 Copynumber: 2.0 Consensus size: 146
114640804 TTGTGATGTA
114640814 ATTGAACTACATATCTTTTGTTAATTTCATCTTTCTTTAGAGGTTATGGCTTCAAATTAGTTTTC
1 ATTGAACTACATATCTTTTGTTAATTTCATCTTTCTTTAGAGGTTATGGCTTCAAATTAGTTTTC
114640879 AAGGGTTTCAAATGCAAATCGAGAAAACAGTCATGATGCGTGATTGAAATGTACTTTTTAGCCAC
66 AAGGGTTTCAAATGCAAATCGAGAAAACAGTCATGATGCGTGATTGAAATGTACTTTTTAGCCAC
114640944 TTTTTGCCATTGAAAT
131 TTTTTGCCATTGAAAT
114640960 ATTGAACTACATATCTTTTGTTAATTTCATCTTTCTTTAGAGGTTATGGCTTCAAATTAGTTTTC
1 ATTGAACTACATATCTTTTGTTAATTTCATCTTTCTTTAGAGGTTATGGCTTCAAATTAGTTTTC
114641025 AAGGGTTTCAAATGCAAATCGAGAAAACAGTCATGATGCGTGATTGAAATGTACTTTTTAGCCAC
66 AAGGGTTTCAAATGCAAATCGAGAAAACAGTCATGATGCGTGATTGAAATGTACTTTTTAGCCAC
114641090 TTTTTGCCATTGAAAT
131 TTTTTGCCATTGAAAT
114641106 A
1 A
114641107 AACTGGATTT
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 147 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (146 bp):
ATTGAACTACATATCTTTTGTTAATTTCATCTTTCTTTAGAGGTTATGGCTTCAAATTAGTTTTC
AAGGGTTTCAAATGCAAATCGAGAAAACAGTCATGATGCGTGATTGAAATGTACTTTTTAGCCAC
TTTTTGCCATTGAAAT
Found at i:114646186 original size:17 final size:18
Alignment explanation
Indices: 114646163--114646204 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
114646153 ATTTTTGATA
114646163 AATTTAAAAT-TAAATTT
1 AATTTAAAATATAAATTT
* *
114646180 TATTTAAAATATTAATTT
1 AATTTAAAATATAAATTT
114646198 AATTTAA
1 AATTTAA
114646205 TTTAATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTAAAATATAAATTT
Found at i:114646199 original size:5 final size:5
Alignment explanation
Indices: 114646191--114646218 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
114646181 ATTTAAAATA
114646191 TTAAT TTAAT TTAAT TTAAT TTAAT TTA
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTA
114646219 GAAAAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTAAT
Found at i:114646199 original size:24 final size:24
Alignment explanation
Indices: 114646131--114646209 Score: 60
Period size: 23 Copynumber: 3.4 Consensus size: 24
114646121 CGTACCATCA
*
114646131 TTTA-TTAAAA-ATTAATTAAAAT
1 TTTATTTAAAATATTAATTTAAAT
* *
114646153 ATTT-TTGATAAAT-TTAAAATTAAAT
1 -TTTATTTA-AAATATT-AATTTAAAT
114646178 TTTATTTAAAATATTAATTT-AAT
1 TTTATTTAAAATATTAATTTAAAT
*
114646201 TTAATTTAA
1 TTTATTTAA
114646210 TTTAATTTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
23 16 0.36
24 16 0.36
25 12 0.27
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (24 bp):
TTTATTTAAAATATTAATTTAAAT
Found at i:114647367 original size:27 final size:27
Alignment explanation
Indices: 114647325--114647385 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
114647315 CCATAACCGG
114647325 TACCTAAGTCAAAAATTCCTCCATCAT
1 TACCTAAGTCAAAAATTCCTCCATCAT
* * * *
114647352 TATCTAAGTTAGAAATTCTTCCATCAT
1 TACCTAAGTCAAAAATTCCTCCATCAT
114647379 TACCTAA
1 TACCTAA
114647386 ACAAACGCGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (27 bp):
TACCTAAGTCAAAAATTCCTCCATCAT
Found at i:114651145 original size:16 final size:17
Alignment explanation
Indices: 114651114--114651146 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
114651104 TTCATAACTA
114651114 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
114651131 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
114651147 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:114651494 original size:46 final size:46
Alignment explanation
Indices: 114651427--114651835 Score: 502
Period size: 46 Copynumber: 8.9 Consensus size: 46
114651417 TTATCTTTGA
* * * * *
114651427 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* * *** *
114651473 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
* ** * ** * *
114651519 TACATTGCCATGGTATCTTTCAAACATGGTCTTATTCA-TTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
*
114651564 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* *
114651610 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* * *
114651656 CCTGTTGTCATGGTCTCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
*
114651702 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* *
114651748 CCTGTTGCCATGGTGTCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
*
114651794 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTT
114651836 ATTTCAGAAA
Statistics
Matches: 320, Mismatches: 37, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
45 45 0.14
46 269 0.84
47 6 0.02
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:114651754 original size:138 final size:138
Alignment explanation
Indices: 114651427--114651834 Score: 559
Period size: 138 Copynumber: 3.0 Consensus size: 138
114651417 TTATCTTTGA
* * * * * * ** *
114651427 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGTCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
*** * * * * **
114651492 TCAACCATGGTCTTGTTCATTTCATGTTAC-ATTGCCATGGTATCTTTCAAACATGGTCTTATTC
66 TCAACCATGGTCTTACACATTTCAT-ATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
* *
114651556 A-TTCCTGT
130 ATTTCATAT
114651564 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
* * *
114651629 TCAACCATGGTCTTACACATTTTATATCCTGTTGTCATGGTCTCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACATTTCATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
114651694 TTTCATAT
131 TTTCATAT
*
114651702 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTGTCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
* *
114651767 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACATTTCATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
114651832 TTT
131 TTT
114651835 TATTTCAGAA
Statistics
Matches: 241, Mismatches: 28, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
136 2 0.01
137 106 0.44
138 133 0.55
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (138 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCATAT
Found at i:114654324 original size:29 final size:30
Alignment explanation
Indices: 114654267--114654334 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
114654257 CACCCTTAAA
* * * *
114654267 ATATTTTCATTATTAGTCCTTCAACTTTTC
1 ATATTTACATTATTAATCCCTCAAATTTTC
*
114654297 ATATTTACATT-TTAATCCCTCAAATTTTG
1 ATATTTACATTATTAATCCCTCAAATTTTC
114654326 AGTATTTAC
1 A-TATTTAC
114654335 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.18, G:0.04, T:0.50
Consensus pattern (30 bp):
ATATTTACATTATTAATCCCTCAAATTTTC
Found at i:114657803 original size:28 final size:28
Alignment explanation
Indices: 114657734--114657834 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
114657724 GACAAGATTG
* * * *
114657734 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
114657764 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
114657792 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
114657821 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
114657835 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:114661754 original size:88 final size:88
Alignment explanation
Indices: 114661593--114661758 Score: 219
Period size: 88 Copynumber: 1.9 Consensus size: 88
114661583 GAATTTTCGT
* * ** * *
114661593 TTCAATCTGCTCCACTACTGCTTAAGGAGATATGATCTTTAATCTTCAGCCTACTCCACTACTGT
1 TTCAATCTGCTCCACTACTGCTTAAGGAGATAAGAACTGCAATCATCAGCCTACTCCACTACCGT
114661658 TCAAGGAGATAAGGCTCACCGTC
66 TCAAGGAGATAAGGCTCACCGTC
* *
114661681 TTCAATCTGCTCTACTACTGCTT-AGAGAGATAAGAACTGCAATCATCAGCCTGCTCCACTACCG
1 TTCAATCTGCTCCACTACTGCTTAAG-GAGATAAGAACTGCAATCATCAGCCTACTCCACTACCG
*
114661745 CTT-AGGGAGATAAG
65 -TTCAAGGAGATAAG
114661759 ACTAGTGGCT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 2 0.03
88 63 0.94
89 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (88 bp):
TTCAATCTGCTCCACTACTGCTTAAGGAGATAAGAACTGCAATCATCAGCCTACTCCACTACCGT
TCAAGGAGATAAGGCTCACCGTC
Found at i:114661802 original size:132 final size:132
Alignment explanation
Indices: 114661662--114662243 Score: 695
Period size: 132 Copynumber: 4.4 Consensus size: 132
114661652 TACTGTTCAA
* * * * * *
114661662 GGAGATAAGGCTCACCGTCTTCAATCTGCTCTACTACTGCTTAGAGAGATAAGAACTGCAATCAT
1 GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGAACTGCAATCTT
* * * *
114661727 CAGCCTGCTCCACTACCGCTTAGGGAGATAAGACTAGTGGCTTAAATCTGCTCCAGTACCGCTAC
66 CAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCGCTAC
114661792 AT
131 AT
* * *
114661794 GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
1 GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGAACTGCAATCTT
** * * * * *
114661859 CAATCTGCTCCGCTATTGCTTAGTGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCACTAC
66 CAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCGCTAC
114661924 AT
131 AT
* * * *
114661926 GGAGATAAGGTTCGCCATCTTTGGTCTGCTCCACCACTGCTTAG-GAAGATAAG-ACATGTAATC
1 GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAG-AGATAAGAAC-TGCAATC
* * * * * * *
114661989 TTCAGCATGCTCCACTATTGCTTAGAGAGATAAGGCTAGTGGCTTTAATCTGCTTCATTGCTGAT
64 TTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCGCT
114662054 ACAT
129 ACAT
* * * **
114662058 AGAGATAAGATTCGCTATCTTCGATCTGCTCCACTACTGCTTA-AGGAGATAAGATTTGCAATCT
1 GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGA-GAGATAAGAACTGCAATCT
** * *
114662122 TCAGCCTATTCCGCTACTGCTT-GGAAAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCGCT
65 TCAGCCTGCTCCACTACTGCTTAGG-GAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCGCT
114662186 ACAT
129 ACAT
* * * * *
114662190 GGAGATAAGATTCGCCATCTTTGGTCTGCTCCACTACTGCTTAGGGATATAAGA
1 GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGA
114662244 CCTATGAATT
Statistics
Matches: 384, Mismatches: 59, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
131 3 0.01
132 380 0.99
133 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (132 bp):
GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGAACTGCAATCTT
CAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCGCTAC
AT
Found at i:114662065 original size:264 final size:265
Alignment explanation
Indices: 114661686--114662244 Score: 782
Period size: 264 Copynumber: 2.1 Consensus size: 265
114661676 CCGTCTTCAA
* *
114661686 TCTGCTCTACTACTGCTTA-GAGAGATAAGA-ACTGCAATCATCAGCCTGCTCCACTACCGCTTA
1 TCTGCTCCACTACTGCTTAGGA-AGATAAGACACTGCAATCATCAGCATGCTCCACTACCGCTTA
* * * *
114661749 GGGAGATAAGACTAGTGGCTTAAATCTGCTCCAGTACCGCTACATGGAGATAAGGTTCGCCATCT
65 GAGAGATAAGACTAGTGGCTTAAATCTGCTCCAGTACCGATACATAGAGATAAGATTCGCCATCT
* * * * *
114661814 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTGCTCCGCTATTGCT
130 TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATCTTCAACCTACTCCGCTACTGCT
** * *
114661879 TAGTGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCACTACATGGAGATAAGGTTCGCCAT
195 TAGAAAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCACTACATGGAGATAAGATTCGCCAT
114661944 CTTTGG
260 CTTTGG
* * * **
114661950 TCTGCTCCACCACTGCTTAGGAAGATAAGACA-TGTAATCTTCAGCATGCTCCACTATTGCTTAG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGACACTGCAATCATCAGCATGCTCCACTACCGCTTAG
* * * * * * *
114662014 AGAGATAAGGCTAGTGGCTTTAATCTGCTTCATTGCTGATACATAGAGATAAGATTCGCTATCTT
66 AGAGATAAGACTAGTGGCTTAAATCTGCTCCAGTACCGATACATAGAGATAAGATTCGCCATCTT
* * *
114662079 CGATCTGCTCCACTACTGCTTAAGGAGATAAGATTTGCAATCTTCAGCCTATTCCGCTACTGCTT
131 CGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATCTTCAACCTACTCCGCTACTGCTT
* *
114662144 GGAAAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCGCTACATGGAGATAAGATTCGCCATC
196 AGAAAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCACTACATGGAGATAAGATTCGCCATC
114662209 TTTGG
261 TTTGG
* *
114662214 TCTGCTCCACTACTGCTTAGGGATATAAGAC
1 TCTGCTCCACTACTGCTTAGGAAGATAAGAC
114662245 CTATGAATTC
Statistics
Matches: 258, Mismatches: 35, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
264 255 0.99
265 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (265 bp):
TCTGCTCCACTACTGCTTAGGAAGATAAGACACTGCAATCATCAGCATGCTCCACTACCGCTTAG
AGAGATAAGACTAGTGGCTTAAATCTGCTCCAGTACCGATACATAGAGATAAGATTCGCCATCTT
CGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATCTTCAACCTACTCCGCTACTGCTT
AGAAAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCACTACATGGAGATAAGATTCGCCATC
TTTGG
Found at i:114687002 original size:15 final size:15
Alignment explanation
Indices: 114686984--114687017 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
114686974 AACCTAACCC
*
114686984 AAAAAAAA-ACAAAG
1 AAAAAAAAGAAAAAG
114686998 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
114687013 AAAAA
1 AAAAA
114687018 CTTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:114700758 original size:73 final size:71
Alignment explanation
Indices: 114700580--114700786 Score: 283
Period size: 73 Copynumber: 2.9 Consensus size: 71
114700570 GTTTTCCAAG
* * *
114700580 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTAT
*
114700645 GTTTCA
66 GTATCA
* *
114700651 AAAAGCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATT--T
114700716 AT-TAAAT-A
64 ATGT--ATCA
* * *
114700724 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTT
114700787 CTACTTTTTA
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
71 58 0.48
72 1 0.01
73 61 0.50
74 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (71 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTAT
GTATCA
Found at i:114700898 original size:233 final size:232
Alignment explanation
Indices: 114700489--114701245 Score: 887
Period size: 233 Copynumber: 3.3 Consensus size: 232
114700479 TGTTTTTTTC
114700489 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTCCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT-CAATTT
114700554 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
65 CT-CTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
* * *
114700619 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAAGCAGCTCATATTGCGAGAGGTGAGTTGAG
129 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
*
114700684 CCTCGGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
194 CCTCAGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
114700723 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTA-TTTCAATTT
114700787 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
65 CT-CTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
114700852 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
129 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
* **
114700917 CCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTTTTTAGTTCATGTTT
194 CCTCAGGGCACGCTGAGGTAATTTCAA-TTC--C----TA-TT-A--AAT
* * * * *
114700967 CCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG-GG---GT-AA-
1 -C-A-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTCAAT
* * * **
114701026 TT-TC-----AATTCATG-TTT-C-A-AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTG
63 TTCTCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * * * *
114701081 GGGCACGCTGAGGTAATTTCAATTCCCAT-TAAATCTAAAATCAACTCATATTGCGAGAAGTGAG
128 AGACACGTTGAGGTAATTTCAATT--TATGT--TTCAAAAATCAACTCATATTGCGAGAAGTGAG
* * *
114701145 TTGAACCT-TGGGCACGCTGAGGTAATTTCAATTCCCATTAAAT
189 TTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
* * *
114701188 CTAAAATC-ACTCATATTGCGAG-AGTGAGTTGAACCT---TGCACGCTGAGGTATTTCAATT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTCAATT
114701246 CATTAAATCT
Statistics
Matches: 460, Mismatches: 37, Indels: 67
0.82 0.07 0.12
Matches are distributed among these distances:
213 6 0.01
214 2 0.00
216 12 0.03
217 15 0.03
218 8 0.02
219 1 0.00
220 1 0.00
221 1 0.00
223 1 0.00
224 2 0.00
225 1 0.00
229 1 0.00
230 54 0.12
231 5 0.01
232 24 0.05
233 251 0.55
234 14 0.03
236 1 0.00
239 1 0.00
240 3 0.01
241 4 0.01
242 3 0.01
243 1 0.00
244 1 0.00
247 3 0.01
248 44 0.10
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (232 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTCAATTTC
TCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
CACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
TCAGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
Found at i:114700934 original size:71 final size:71
Alignment explanation
Indices: 114700813--114700946 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
114700803 GTTTTCCAAG
* * *
114700813 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
114700878 GTTTCA
66 GTTTCA
* * *
114700884 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
114700947 CTGCTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:114701048 original size:159 final size:160
Alignment explanation
Indices: 114700659--114701104 Score: 716
Period size: 159 Copynumber: 2.8 Consensus size: 160
114700649 CAAAAAGCAG
** * * * *
114700659 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT-
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCATGTT---TC
114700723 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
63 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
*
114700788 TACTTTTTAATTCATGTTTTCCAAGAAAATCAG
128 TACTTTTTAATTCATGTTTTCCAAGAAAATCAA
*
114700821 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCATGTTTCAAA
*
114700886 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGC
66 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTAC
*
114700951 TTTTTAGTTCATG-TTTCCAAGAAAATCAA
131 TTTTTAATTCATGTTTTCCAAGAAAATCAA
*
114700980 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGGGGTAATTTCAATTCATGTTTCAAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCATGTTTCAAA
* ** *
114701045 AATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATT
66 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
114701105 CCCATTAAAT
Statistics
Matches: 267, Mismatches: 16, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
159 135 0.51
160 79 0.30
162 53 0.20
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (160 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCATGTTTCAAA
AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTAC
TTTTTAATTCATGTTTTCCAAGAAAATCAA
Found at i:114701193 original size:73 final size:71
Alignment explanation
Indices: 114700972--114701256 Score: 377
Period size: 71 Copynumber: 4.0 Consensus size: 71
114700962 TGTTTCCAAG
* * ** * * *
114700972 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGGGGTAATTTCAATTCAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCT-TGGGCACGCTGAGGTAATTTCAATTCAT
* *
114701037 GT--TTCA
65 -TAAATCT
114701043 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTT-GGGCACGCTGAGGTAATTTCAATT--C
114701108 ATTAAATCT
63 ATTAAATCT
114701117 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGCACGCTGAGGTAATTTCAATTCCCA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGCACGCTGAGGTAATTTCAATT--CA
114701182 TTAAATCT
64 TTAAATCT
114701190 AAAATC-ACTCATATTGCGAG-AGTGAGTTGAACCTT--GCACGCTGAGGT-ATTTCAATTCATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGCACGCTGAGGTAATTTCAATTCATT
114701250 AAATCT
66 AAATCT
114701256 A
1 A
114701257 GCTCATATTG
Statistics
Matches: 200, Mismatches: 9, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
66 11 0.05
68 9 0.05
69 12 0.06
71 69 0.34
72 15 0.08
73 45 0.22
74 39 0.19
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGCACGCTGAGGTAATTTCAATTCATT
AAATCT
Found at i:114701455 original size:78 final size:79
Alignment explanation
Indices: 114701311--114701455 Score: 181
Period size: 78 Copynumber: 1.8 Consensus size: 79
114701301 ATTCTATCTT
* * * * *
114701311 AAAGAGTCAATTCATATTACGAGAGGTGAGTTGAGTCTTTTTTTTCTATTTTCAATTTCTGTCTT
1 AAAGAGTCAACTCATATTACGAGAGGTGAGTTGAGCCTTTATTTTCTATTTTCAATATCTGACTT
114701376 TTTTTGTTTTTTTC
66 TTTTTGTTTTTTTC
*
114701390 AAAGA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGT-TTTTCGAA-ATCT-A
1 AAAGAGTCAACTCATATTACGAGAGGTGAGTTGAGCCTTT-ATTTTC-TATTTTC-AATATCTGA
114701451 CTTTT
63 CTTTT
114701456 CTCATGTTGC
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
78 36 0.63
79 18 0.32
80 3 0.05
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (79 bp):
AAAGAGTCAACTCATATTACGAGAGGTGAGTTGAGCCTTTATTTTCTATTTTCAATATCTGACTT
TTTTTGTTTTTTTC
Found at i:114702240 original size:16 final size:16
Alignment explanation
Indices: 114702221--114702256 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
114702211 AACCTAACCC
*
114702221 AAAAAAAAA-ACAAAG
1 AAAAAAAAAGAAAAAG
114702236 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
114702252 AAAAA
1 AAAAA
114702257 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:114703106 original size:20 final size:21
Alignment explanation
Indices: 114703081--114703121 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
114703071 ATCATATGTG
*
114703081 TATATTGTATATAT-TATATT
1 TATATTATATATATATATATT
114703101 TATATTATATATATATATATT
1 TATATTATATATATATATATT
114703122 CTTAATGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TATATTATATATATATATATT
Found at i:114705742 original size:72 final size:71
Alignment explanation
Indices: 114705564--114705769 Score: 283
Period size: 71 Copynumber: 2.9 Consensus size: 71
114705554 GTTTTCCAAG
* * *
114705564 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTAT
*
114705629 GTTTCA
66 GTATCA
*
114705635 AAAAGCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATT--T
114705699 AT-TAAAT-A
64 ATGT--ATCA
* * *
114705707 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTT
114705770 CTACTTTTTT
Statistics
Matches: 121, Mismatches: 9, Indels: 10
0.86 0.06 0.07
Matches are distributed among these distances:
70 21 0.17
71 38 0.31
72 38 0.31
73 24 0.20
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (71 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTAT
GTATCA
Found at i:114705881 original size:232 final size:231
Alignment explanation
Indices: 114705473--114706234 Score: 912
Period size: 232 Copynumber: 3.3 Consensus size: 231
114705463 TGTTTTTTTC
*
114705473 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTCCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
114705538 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CT-CTTTTTAATTCATGTTTTCCAAG-AAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
* * *
114705603 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAAGCAGCTCATATTGCGAGAGGTGAGTTGAG
129 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
114705668 CCTCGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
194 CCTCGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
114705706 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
114705770 CTACTTTTTTAATTCATGTTTTCCAAGAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CT-C-TTTTTAATTCATGTTTTCCAAGAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
114705835 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
129 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
* **
114705900 CCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTTTTTAGTTCATGTTT
194 CCTC-GGGCACGCTGAGGTAATTTCAA-TTC--C----TA-TT-A--AAT
* * * * *
114705950 CCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG-GG----GT-AA
1 -C-A-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
* * * **
114706009 -TT-TC-----AATTCATG-TTT-CAA-AAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTG
63 TTTCTCTTTTTAATTCATGTTTTCCAAGAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * * * *
114706064 GGGCACGCTGAGGTAATTTCAATTCCCAT-TAATCTAAAATCAACTCATATTGCGAGAAGTGAGT
128 AGACACGTTGAGGTAATTTCAATT--TATGT-TTCAAAAATCAACTCATATTGCGAGAAGTGAGT
* * *
114706128 TGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCCATTAAAT
190 TGAGCC-TCGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
* * ** *
114706171 CTAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
114706235 CCCATTAAAT
Statistics
Matches: 462, Mismatches: 39, Indels: 64
0.82 0.07 0.11
Matches are distributed among these distances:
218 41 0.09
219 2 0.00
220 1 0.00
221 1 0.00
223 2 0.00
224 4 0.01
225 2 0.00
229 1 0.00
230 53 0.11
231 7 0.02
232 232 0.50
233 52 0.11
234 3 0.01
236 1 0.00
239 1 0.00
240 3 0.01
241 4 0.01
242 3 0.01
243 1 0.00
244 1 0.00
247 3 0.01
248 44 0.10
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (231 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTCTTTTTAATTCATGTTTTCCAAGAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
CACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
TCGGGCACGCTGAGGTAATTTCAATTCCTATTAAAT
Found at i:114705905 original size:160 final size:159
Alignment explanation
Indices: 114705635--114706087 Score: 698
Period size: 159 Copynumber: 2.8 Consensus size: 159
114705625 TTATGTTTCA
* * * *
114705635 AAAAGCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT--T
*
114705699 AT-TAAAT-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATT
64 ATGT--TTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATT
114705762 TTCAATTTCTACTTTTTTAATTCATGTTTTCCAAG
127 TTCAATTTCTAC-TTTTTAATTCATG-TTTCCAAG
114705797 -AAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
114705861 GTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
66 GTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* *
114705926 ATTTCTGCTTTTTAGTTCATGTTTCCAAG
131 ATTTCTACTTTTTAATTCATGTTTCCAAG
* * *
114705955 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGGGGTAATTTCAATTCAT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
* ** *
114706020 GTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCA
66 GTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
114706085 ATT
131 ATT
114706088 CCCATTAATC
Statistics
Matches: 273, Mismatches: 14, Indels: 11
0.92 0.05 0.04
Matches are distributed among these distances:
158 8 0.03
159 138 0.51
160 70 0.26
161 36 0.13
162 21 0.08
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (159 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
ATTTCTACTTTTTAATTCATGTTTCCAAG
Found at i:114705917 original size:71 final size:71
Alignment explanation
Indices: 114705797--114705929 Score: 212
Period size: 71 Copynumber: 1.9 Consensus size: 71
114705787 GTTTTCCAAG
* * *
114705797 AAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATG
114705862 TTTCAA
66 TTTCAA
* * *
114705868 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
114705930 CTGCTTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (71 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATG
TTTCAA
Found at i:114706121 original size:73 final size:74
Alignment explanation
Indices: 114705955--114706306 Score: 516
Period size: 74 Copynumber: 4.8 Consensus size: 74
114705945 TGTTTCCAAG
* * *** * * *
114705955 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGGGGTAATTTCAATT--C
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
* *
114706018 ATGT--TTCA
66 AT-TAAATCT
114706026 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
114706091 ATT-AATCT
66 ATTAAATCT
114706099 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
114706164 ATTAAATCT
66 ATTAAATCT
114706173 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
114706238 ATTAAATCT
66 ATTAAATCT
* * * * * *
114706247 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAA
114706307 ATTCTATCTT
Statistics
Matches: 261, Mismatches: 16, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
71 54 0.21
72 1 0.00
73 73 0.28
74 133 0.51
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCC
ATTAAATCT
Found at i:114706219 original size:147 final size:145
Alignment explanation
Indices: 114705797--114706350 Score: 585
Period size: 159 Copynumber: 3.7 Consensus size: 145
114705787 GTTTTCCAAG
* ** * * *
114705797 AAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGGCACGCTGAGGTAATTTCAATTCATG
* * ** *
114705862 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
66 TATCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAA
* ** *
114705927 TTTCTGCTTTTTAGTTCATGTTTCCAAGA
131 -TTC--C----CA-TT-A--AAT-C--TA
** * * *
114705956 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGGGGTAATTTCAATTCATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGGCACGCTGAGGTAATTTCAATTCATG
*
114706021 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAA
66 TATCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAA
114706086 TTCCCATT-AATCTA
131 TTCCCATTAAATCTA
* * *
114706100 AAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAATTCCCA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGGCACGCTGAGGTAATTTCAATT--CA
*
114706165 T-TAAATCTAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATT
64 TGT--ATCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATT
114706229 TCAATTCCCATTAAATCTA
127 TCAATTCCCATTAAATCTA
* * * *
114706248 AAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGGCACGCTGAGGTAATTTC-AATTC-A
* * * * *
114706313 TCT-T-AAAGAGTCAATTCATATTACGAGAGGTGAGTTGA
64 TGTATCAAA-AATCAACTCATATTGCGAGAAGTGAGTTGA
114706351 GTCTTTTAAT
Statistics
Matches: 354, Mismatches: 32, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
144 54 0.15
145 3 0.01
146 31 0.09
147 72 0.20
148 59 0.17
149 5 0.01
151 2 0.01
152 1 0.00
156 1 0.00
158 3 0.01
159 123 0.35
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (145 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGGCACGCTGAGGTAATTTCAATTCATG
TATCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGGGCACGCTGAGGTAATTTCAA
TTCCCATTAAATCTA
Found at i:114706518 original size:54 final size:52
Alignment explanation
Indices: 114706390--114706532 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 52
114706380 CTTTTTTTTT
*
114706390 TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTTTCG
1 TTTTCAAAAATCAAC-CATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTCG
* *
114706442 TTTTTC-GAAATCTA-C---TTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTACG
1 -TTTTCAAAAATCAACCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTT-T-CG
**
114706492 -TTTCAAAAATCAACCCATATTGCGAGAAATGAGTTGAGCCT
1 TTTTCAAAAATCAA-CCATATTGCGAGAGGTGAGTTGAGCCT
114706533 CAGTTCACTT
Statistics
Matches: 74, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
47 21 0.28
48 12 0.16
49 7 0.09
50 3 0.04
51 1 0.01
52 5 0.07
53 5 0.07
54 20 0.27
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (52 bp):
TTTTCAAAAATCAACCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTCG
Found at i:114707233 original size:15 final size:15
Alignment explanation
Indices: 114707215--114707248 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
114707205 AACCTAACCC
*
114707215 AAAAAAAA-ACAAAG
1 AAAAAAAAGAAAAAG
114707229 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
114707244 AAAAA
1 AAAAA
114707249 CTTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:114707263 original size:16 final size:17
Alignment explanation
Indices: 114707244--114707281 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
114707234 AAAGAAAAAG
*
114707244 AAAAACTTA-CCCCAAA
1 AAAAACTAACCCCCAAA
*
114707260 AAAACCTAACCCCCAAA
1 AAAAACTAACCCCCAAA
114707277 AAAAA
1 AAAAA
114707282 AAGAAGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAACTAACCCCCAAA
Found at i:114708099 original size:14 final size:14
Alignment explanation
Indices: 114708080--114708118 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
114708070 ATCATATGTG
114708080 TATATTGTATATAT-
1 TATATT-TATATATA
114708094 TATATTTATATATA
1 TATATTTATATATA
*
114708108 TATATATATAT
1 TATATTTATAT
114708119 TCTTAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TATATTTATATATA
Found at i:114712394 original size:28 final size:28
Alignment explanation
Indices: 114712354--114712409 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
114712344 AGGGTGATAG
114712354 AACAAATCATATATCTCCAAAATTTTTC
1 AACAAATCATATATCTCCAAAATTTTTC
114712382 AACAAATCATATATCTCCAAAATTTTTC
1 AACAAATCATATATCTCCAAAATTTTTC
114712410 TTCACTTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (28 bp):
AACAAATCATATATCTCCAAAATTTTTC
Found at i:114716850 original size:25 final size:25
Alignment explanation
Indices: 114716797--114716961 Score: 102
Period size: 25 Copynumber: 6.6 Consensus size: 25
114716787 CTTATGAACA
* ** *
114716797 TCCCGTTATATGGCTCTCACAAGCC
1 TCCCGATATATGGCTCTCATGAGCT
*
114716822 TCCCGATATCTGGCTCTCATGAGCT
1 TCCCGATATATGGCTCTCATGAGCT
* *
114716847 TCCCCAT-TAATGGCTCTCTTGAGCT
1 TCCCGATAT-ATGGCTCTCATGAGCT
* * *
114716872 TCCC-TTTTATGGCT-TGTATGAGCT
1 TCCCGATATATGGCTCT-CATGAGCT
* * ** *
114716896 TCCTGATATTTGGCTAGCAAGAGCT
1 TCCCGATATATGGCTCTCATGAGCT
* * *
114716921 TCCCGTTATATAGCTCGCATGAGCT
1 TCCCGATATATGGCTCTCATGAGCT
** *
114716946 TCTTGTTATATGGCTC
1 TCCCGATATATGGCTC
114716962 GGAAGAGCTC
Statistics
Matches: 108, Mismatches: 27, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
23 1 0.01
24 17 0.16
25 90 0.83
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (25 bp):
TCCCGATATATGGCTCTCATGAGCT
Found at i:114716893 original size:24 final size:25
Alignment explanation
Indices: 114716832--114716898 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
114716822 TCCCGATATC
114716832 TGGCTCTC-ATGAGCTTCCCCATTAA
1 TGGCTCTCTATGAGCTT-CCCATTAA
* *
114716857 TGGCTCTCT-TGAGCTTCCCTTTTA
1 TGGCTCTCTATGAGCTTCCCATTAA
*
114716881 TGGCT-TGTATGAGCTTCC
1 TGGCTCTCTATGAGCTTCC
114716899 TGATATTTGG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 2 0.05
24 20 0.54
25 15 0.41
ACGTcount: A:0.13, C:0.28, G:0.19, T:0.39
Consensus pattern (25 bp):
TGGCTCTCTATGAGCTTCCCATTAA
Found at i:114716960 original size:50 final size:50
Alignment explanation
Indices: 114716867--114716977 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 50
114716857 TGGCTCTCTT
* * * * *
114716867 GAGCTTCCC-TTTTATGGCTTGTATGAGCTTCCTGATATTTGGCTAGCAA
1 GAGCTTCCCGTTATATAGCTCGCATGAGCTTCCTGATATATGGCTAGCAA
* * * *
114716916 GAGCTTCCCGTTATATAGCTCGCATGAGCTTCTTGTTATATGGCTCGGAA
1 GAGCTTCCCGTTATATAGCTCGCATGAGCTTCCTGATATATGGCTAGCAA
*
114716966 GAGCTCCCCGTT
1 GAGCTTCCCGTT
114716978 TACATGCTTA
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
49 9 0.18
50 42 0.82
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (50 bp):
GAGCTTCCCGTTATATAGCTCGCATGAGCTTCCTGATATATGGCTAGCAA
Found at i:114716969 original size:25 final size:25
Alignment explanation
Indices: 114716891--114716970 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 25
114716881 TGGCTTGTAT
* * *
114716891 GAGCTTCCTGATATTTGGCTAGCAA
1 GAGCTTCCTGTTATATGGCTCGCAA
* * *
114716916 GAGCTTCCCGTTATATAGCTCGCAT
1 GAGCTTCCTGTTATATGGCTCGCAA
* *
114716941 GAGCTTCTTGTTATATGGCTCGGAA
1 GAGCTTCCTGTTATATGGCTCGCAA
114716966 GAGCT
1 GAGCT
114716971 CCCCGTTTAC
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGCTCGCAA
Found at i:114720123 original size:9 final size:9
Alignment explanation
Indices: 114720109--114720176 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
114720099 ATAAGTATAA
114720109 AATTAACCG
1 AATTAACCG
*
114720118 AATTAACTG
1 AATTAACCG
* *
114720127 TATTAATCG
1 AATTAACCG
*
114720136 AATTAACAG
1 AATTAACCG
*
114720145 AATT-ACCTA
1 AATTAACC-G
* *
114720154 AATTACCCA
1 AATTAACCG
114720163 AATTAACCG
1 AATTAACCG
114720172 AATTA
1 AATTA
114720177 TTTGTATAAA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
8 2 0.04
9 41 0.91
10 2 0.04
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:114720139 original size:27 final size:27
Alignment explanation
Indices: 114720108--114720176 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
114720098 AATAAGTATA
** *
114720108 AAATTAACCGAATTAACTGTATTAATC
1 AAATTAACCGAATTAACTAAATTAACC
* * * *
114720135 GAATTAACAGAATTACCTAAATTACCC
1 AAATTAACCGAATTAACTAAATTAACC
114720162 AAATTAACCGAATTA
1 AAATTAACCGAATTA
114720177 TTTGTATAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTAACCGAATTAACTAAATTAACC
Found at i:114720211 original size:5 final size:6
Alignment explanation
Indices: 114720196--114720236 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
114720186 AATTATATGT
*
114720196 TTTTTA TTTTTA TTTTTA GTTTTAAA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
114720237 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:114720224 original size:20 final size:21
Alignment explanation
Indices: 114720201--114720244 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
114720191 TATGTTTTTT
114720201 ATTTTTATTTTTAGTT-TTAA
1 ATTTTTATTTTTAGTTATTAA
*
114720221 ATTTTTATTTTTATTTATTAA
1 ATTTTTATTTTTAGTTATTAA
114720242 ATT
1 ATT
114720245 ATTTGTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTATTTTTAGTTATTAA
Found at i:114720277 original size:13 final size:13
Alignment explanation
Indices: 114720261--114720304 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
114720251 AATTTTTATG
114720261 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
114720274 ATTGGGTTGGG--
1 ATTGGGTTGGGTA
114720285 -TTGGGTTGGGTA
1 ATTGGGTTGGGTA
*
114720297 CTTGGGTT
1 ATTGGGTT
114720305 AATATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.36
13 18 0.64
ACGTcount: A:0.09, C:0.02, G:0.48, T:0.41
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:114733238 original size:71 final size:71
Alignment explanation
Indices: 114733154--114733317 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114733144 CGATTTGTCT
114733154 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114733219 CTTTCA
66 CTTTCA
114733225 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114733290 CTTTCA
66 CTTTCA
114733296 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114733318 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:114733355 original size:71 final size:70
Alignment explanation
Indices: 114733154--114733351 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
114733144 CGATTTGTCT
* * * *
114733154 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114733219 CTTTCA
65 CTTTCA
* * * *
114733225 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114733290 CTTTCA
65 CTTTCA
* *
114733296 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114733352 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114740805 original size:71 final size:71
Alignment explanation
Indices: 114740721--114740884 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114740711 CGATTTGTCT
114740721 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114740786 CTTTCA
66 CTTTCA
114740792 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114740857 CTTTCA
66 CTTTCA
114740863 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114740885 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:114740922 original size:71 final size:70
Alignment explanation
Indices: 114740721--114740918 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
114740711 CGATTTGTCT
* * * *
114740721 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114740786 CTTTCA
65 CTTTCA
* * * *
114740792 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114740857 CTTTCA
65 CTTTCA
* *
114740863 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114740919 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114743764 original size:87 final size:85
Alignment explanation
Indices: 114743661--114743832 Score: 299
Period size: 87 Copynumber: 2.0 Consensus size: 85
114743651 CATCCTTGTG
*
114743661 TATGTCATATCATTAATTAATGAATTTTTAAATATACAAAAAATATTTAATTTTTATAAATTTTA
1 TATGCCATATCATTAATTAATGAATTTTTAAATATA-AAAAAATATTTAATTTTTATAAATTTT-
114743726 AATTTTTTAAAATTATTTTTAT
64 AATTTTTTAAAATTATTTTTAT
*
114743748 TATGCCATATCATTAATTAATGAATTTTTAAATATATAAAAATATTTAATTTTTATAAATTTTAA
1 TATGCCATATCATTAATTAATGAATTTTTAAATATAAAAAAATATTTAATTTTTATAAATTTTAA
*
114743813 TTTTTTAAAATTGTTTTTAT
66 TTTTTTAAAATTATTTTTAT
114743833 AAATTATTTT
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
85 21 0.26
86 26 0.32
87 35 0.43
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (85 bp):
TATGCCATATCATTAATTAATGAATTTTTAAATATAAAAAAATATTTAATTTTTATAAATTTTAA
TTTTTTAAAATTATTTTTAT
Found at i:114743813 original size:16 final size:16
Alignment explanation
Indices: 114743787--114743821 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
114743777 AAATATATAA
114743787 AAATATTTAATTTTTAT
1 AAATATTTAATTTTT-T
114743804 AAAT-TTTAATTTTTT
1 AAATATTTAATTTTTT
114743819 AAA
1 AAA
114743822 ATTGTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 10 0.56
17 4 0.22
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
AAATATTTAATTTTTT
Found at i:114743817 original size:17 final size:15
Alignment explanation
Indices: 114743786--114743854 Score: 52
Period size: 16 Copynumber: 4.3 Consensus size: 15
114743776 TAAATATATA
114743786 AAAATATTTAATTTTT
1 AAAAT-TTTAATTTTT
114743802 ATAAATTTTAATTTTTT
1 A-AAATTTTAA-TTTTT
*
114743819 AAAATTGTT--TTTAT
1 AAAATT-TTAATTTTT
114743833 AAATTATTTTAAATTTTT
1 AAA--ATTTT-AATTTTT
114743851 AAAA
1 AAAA
114743855 AAAATTTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 16
0.70 0.03 0.26
Matches are distributed among these distances:
14 7 0.16
15 2 0.05
16 15 0.35
17 12 0.28
18 7 0.16
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (15 bp):
AAAATTTTAATTTTT
Found at i:114748618 original size:55 final size:55
Alignment explanation
Indices: 114748558--114748667 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
114748548 AAAAGAATGA
*
114748558 AGTTTTGGATTGTGCTTTTTGGAATATAGCAATCTTATAAAACACTGTTATGAAG
1 AGTTTTGGATTGTGCTTTATGGAATATAGCAATCTTATAAAACACTGTTATGAAG
*
114748613 AGTTTTGGATTGTGCTTTATGGAATATAGCATTCTTATAAAACACTGTTATGAAG
1 AGTTTTGGATTGTGCTTTATGGAATATAGCAATCTTATAAAACACTGTTATGAAG
114748668 TTTATTTTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (55 bp):
AGTTTTGGATTGTGCTTTATGGAATATAGCAATCTTATAAAACACTGTTATGAAG
Found at i:114752957 original size:21 final size:20
Alignment explanation
Indices: 114752924--114752967 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
114752914 CTATTTGTAT
**
114752924 ATTATTAAAATTTTTAATTA
1 ATTATTAAAATTTAAAATTA
*
114752944 ATTATGTATAATTTAAAATTA
1 ATTAT-TAAAATTTAAAATTA
114752965 ATT
1 ATT
114752968 TATATTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTATTAAAATTTAAAATTA
Found at i:114754713 original size:13 final size:13
Alignment explanation
Indices: 114754695--114754719 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114754685 GACGGTGGCC
114754695 GGCGGTGGCCGGA
1 GGCGGTGGCCGGA
114754708 GGCGGTGGCCGG
1 GGCGGTGGCCGG
114754720 CGACGGTCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.24, G:0.64, T:0.08
Consensus pattern (13 bp):
GGCGGTGGCCGGA
Found at i:114755401 original size:3 final size:3
Alignment explanation
Indices: 114755395--114755949 Score: 214
Period size: 3 Copynumber: 180.7 Consensus size: 3
114755385 TGAATTTCTA
* * * *
114755395 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T
* * *
114755443 TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
114755488 TAT TAT TAT TAT T-T TAC TAT TAT TATT TAT AAA TAT TAGT GTA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT
* *
114755534 T-T TAT T-T TAA TAT CAT TA- TAT TAT GT-T TACT T-T T-T TGAAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T--AT TAT
* * *
114755576 CTA- TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* *
114755622 GTACA TAT TAT T-T ATAC TA- TACT TAT TAT TAT TAT TAT TAT TAT TAT
1 -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
114755669 TAT TA- CATT TAC TAT TAT TATT TAT AAA TAT TAGT GTA- TAT TTT TAT
1 TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT
* *
114755716 TA- TAT ATAT T-T ATAT ATACT CT-T TAT GTAT GGTAT T-T T-T TAA CAT
1 TAT TAT -TAT TAT -TAT -TA-T -TAT TAT -TAT --TAT TAT TAT TAT TAT
* *
114755761 TAT TA- TATT TAC TAT TA- TATT TAT ATAT CTAA TA- TAT TA- TAT T-T
1 TAT TAT TA-T TAT TAT TAT TA-T TAT -TAT -TAT TAT TAT TAT TAT TAT
* * * * * * *
114755805 TAT T-T TCCT TACCT CAT TAT TACGT CA- TAC T-T TCT TTT GTAT TTT
1 TAT TAT T-AT TA--T TAT TAT TA--T TAT TAT TAT TAT TAT -TAT TAT
*
114755850 TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
114755898 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT ATAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT -TAT TAT
114755945 TAT TA
1 TAT TA
114755950 ATAGGTACTT
Statistics
Matches: 422, Mismatches: 65, Indels: 130
0.68 0.11 0.21
Matches are distributed among these distances:
2 49 0.12
3 299 0.71
4 58 0.14
5 16 0.04
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:114755602 original size:184 final size:177
Alignment explanation
Indices: 114755346--114755712 Score: 628
Period size: 184 Copynumber: 2.0 Consensus size: 177
114755336 TTTTTTAAAT
* *
114755346 TATTTTATTTTAATATTATTATATTATGTTTAGTTTTTTTGAATTTCTATATTATTATTATTATT
1 TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTTTGAATTTCTATATTATTATTATTATT
114755411 ATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTAT
66 ATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATAC-T--TATTATTATTA-
*
114755476 TATCATTATTATTATTATTATTATTTTACTATTATTATTTATAAATATTAGTGTA
127 T-T-ATTATTATTATTATTA-CA-TTTACTATTATTATTTATAAATATTAGTGTA
114755531 TATTTTATTTTAATATCATTATATTATGTTTA-CTTTTTTGAATTTCTATATTATTATTATTATT
1 TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTTTGAATTTCTATATTATTATTATTATT
114755595 ATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTATTATTATTATTAT
66 ATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTATTATTATTATTAT
114755660 TATTATTATTATTACATTTACTATTATTATTTATAAATATTAGTGTA
131 TATTATTATTATTACATTTACTATTATTATTTATAAATATTAGTGTA
114755707 TATTTT
1 TATTTT
114755713 TATTATATAT
Statistics
Matches: 179, Mismatches: 3, Indels: 9
0.94 0.02 0.05
Matches are distributed among these distances:
176 37 0.21
177 1 0.01
178 16 0.09
179 1 0.01
180 1 0.01
181 11 0.06
183 1 0.01
184 80 0.45
185 31 0.17
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (177 bp):
TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTTTGAATTTCTATATTATTATTATTATT
ATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTATTATTATTATTAT
TATTATTATTATTACATTTACTATTATTATTTATAAATATTAGTGTA
Found at i:114768360 original size:73 final size:73
Alignment explanation
Indices: 114768237--114769155 Score: 782
Period size: 73 Copynumber: 12.2 Consensus size: 73
114768227 GTATTTTGAT
* * * * ** *
114768237 ATTTTTATTTCTATTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACATG
1 ATTTTAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
114768301 TTGAGGTA
66 CTGAGGTA
* * * *
114768309 ATTTTTATTTCTATTTTCAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 ATTTTAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
114768374 CTGAGGTA
66 CTGAGGTA
* * * * *
114768382 ATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGTGAGA-ATGAGTTGAAGCCTCAAGATAC
1 ATTTTAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTCAAGACAC
*
114768445 GTTGAGGT-
65 GCTGAGGTA
* *
114768453 ATTTTCAATTTATGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCA
1 ATTTT-AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---A
*
114768516 CATGCTGAGGT-
62 CACGCTGAGGTA
* * **
114768527 ATTTTCAATTTCTATCTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
1 ATTTT-AATTTCTGT-TTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
*
114768592 GCACGCTGAGGT-
61 ACACGCTGAGGTA
** *
114768604 ATTGGAAATTT-TGTTTCTTAATTTATGTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
1 ATT-TTAATTTCTG-TT-TTCA---A------AAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
*
114768668 GCCTCAAGACACGTTGAGGTA
53 GCCTCAAGACACGCTGAGGTA
* ** *
114768689 ATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAT
1 ATTTTAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
114768754 GCTGAGGT-
65 GCTGAGGTA
* *
114768762 ATTTTCAATTT-TGTCTTTCAAAAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTC-GGGC
1 ATTTT-AATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
114768823 ACGCTGAGGT-
63 ACGCTGAGGTA
* * * **
114768833 ATTGGTAATTTTTGTTTCTTAATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
1 ATT-TTAATTTCTG-TT-TTCA---A------AAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
*
114768898 G-CTCAAGACACGTTGAGGTA
53 GCCTCAAGACACGCTGAGGTA
* ** * *
114768918 ATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGACATGAGTTGATCCTCAAGACAT
1 ATTTTAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
114768983 GCTGAGGT-
65 GCTGAGGTA
* *
114768991 ATTTTCAATTTTTGTCTTTCAAAAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 ATTTT-AATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
114769054 GCGCTGAGGTA
63 ACGCTGAGGTA
* * * *
114769065 ATTTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCGTCAGGGCAC
1 ATTTTAATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
114769129 GCTGAGGT-
65 GCTGAGGTA
*
114769137 ATTTTCAATTTCTGCTTTC
1 ATTTT-AATTTCTGTTTTC
114769156 CAATTTCTGC
Statistics
Matches: 705, Mismatches: 84, Indels: 116
0.78 0.09 0.13
Matches are distributed among these distances:
71 43 0.06
72 130 0.18
73 197 0.28
74 123 0.17
75 27 0.04
76 2 0.00
77 22 0.03
79 37 0.05
80 3 0.00
81 5 0.01
82 9 0.01
83 12 0.02
84 87 0.12
85 8 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (73 bp):
ATTTTAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTA
Found at i:114768960 original size:229 final size:230
Alignment explanation
Indices: 114768387--114769064 Score: 1053
Period size: 230 Copynumber: 2.9 Consensus size: 230
114768377 AGGTAATTTC
* * *
114768387 AATTTCTGTTTTCAAAATTCAACTCATATTGTGAG-AATGAGTTGAAGCCTCAAGATACGTTGAG
1 AATTTATG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG-AGCCTCAAGACACGTTGAG
* * ** *
114768451 GTATTTTCAATTTATGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGT
64 GTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-
*
114768513 TCACATGCTGAGGTATTTTCAATTTCTATCTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTG
128 --ACATGCTGAGGTATTTTCAATTT-TGTCTTTC--AAAAAAATCAACTCAT--TGCGAGAGGTG
*
114768578 AGTTGAGCCTCGGGGCACGCTGAGGTATTGGAAATTTTGTTTCTT
186 AGTTGAGCCTCAGGGCACGCTGAGGTATTGGAAATTTTGTTTCTT
**
114768623 AATTTATGTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT
1 AATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
114768688 AATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 AATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
114768753 TGCTGAGGTATTTTCAATTTTGTCTTTCAAAAAAATCAACTCATTGCGAGAGGTGAGTTGAGCCT
131 TGCTGAGGTATTTTCAATTTTGTCTTTCAAAAAAATCAACTCATTGCGAGAGGTGAGTTGAGCCT
*
114768818 C-GGGCACGCTGAGGTATTGGTAATTTTTGTTTCTT
196 CAGGGCACGCTGAGGTATTGG-AAATTTTGTTTCTT
114768853 AATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG-CTCAAGACACGTTGAGGT
1 AATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
114768917 AATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGACATGAGTTGATCCTCAAGACA
66 AATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
114768982 TGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATTGCGAGAGGTGAGTTGAGCC
131 TGCTGAGGTATTTTCAA-TTTTGTCTTTCAAAAAAATCAACTCATTGCGAGAGGTGAGTTGAGCC
* *
114769047 TCAGGACGCGCTGAGGTA
195 TCAGGGCACGCTGAGGTA
114769065 ATTTCAATTT
Statistics
Matches: 417, Mismatches: 18, Indels: 19
0.92 0.04 0.04
Matches are distributed among these distances:
229 117 0.28
230 128 0.31
231 13 0.03
232 16 0.04
234 7 0.02
235 85 0.20
236 14 0.03
237 36 0.09
238 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (230 bp):
AATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
TGCTGAGGTATTTTCAATTTTGTCTTTCAAAAAAATCAACTCATTGCGAGAGGTGAGTTGAGCCT
CAGGGCACGCTGAGGTATTGGAAATTTTGTTTCTT
Found at i:114769045 original size:146 final size:147
Alignment explanation
Indices: 114768243--114769155 Score: 867
Period size: 146 Copynumber: 6.1 Consensus size: 147
114768233 TGATATTTTT
* * * * *
114768243 ATTTCTATTTTC--AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACATGTTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCA-ATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
** * * *
114768306 GTAATTTTTATTTCTATTTTC-AAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
65 GTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
*
114768370 CACGCTGAGGTAATTTCA
130 CACGCTGAGGTATTTTCA
* * * *
114768388 ATTTCTGTTTTC--AAAATTCAACTCATATTGTGAG-AATGAGTTGAAGCCTCAAGATACGTTGA
1 ATTTCTGTTTTCAAAAAAATCAACTCA-ATTGCGAGAAATGAGTTG-AGCCTCAAGACACGCTGA
* * *
114768450 GGTATTTTCAATTTATGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
64 GGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
*
114768512 TTCACATGCTGAGGTATTTTCA
129 ---ACACGCTGAGGTATTTTCA
* * ** ** *
114768534 ATTTCTATCTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 ATTTCTGT-TTTC--AAAAAAATCAACTCA-ATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
** *
114768599 GAGGT-ATTGGAAATTT-TGTTTCTTAATTTATGTTTCAAAATTCAACTCATATTGCGAGAGGTG
62 GAGGTAATT-TCAATTTCTGTTT-TCAA---A------AAAA-TCAACTCATATTGCGAGAGGTG
* *
114768662 AGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
115 AGTTGAGCCTCAAGACACGCTGAGGTATTTTCA
*
114768695 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCA-ATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* *
114768760 GTATTTTCAATTT-TGTCTTTCAAAAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTC-GG
65 GTAATTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
* *
114768821 GCACGCTGAGGTATTGGT-A
129 ACACGCTGAGGTATT-TTCA
* *
114768840 ATTTTTGTTTCTTAATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG-CTCAA
1 ATTTCTGTTT-TCAA---A------AAAA-TCAACTCA-ATTGCGAGAAATGAGTTGAGCCTCAA
* **
114768904 GACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGACATGAGTT
54 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
114768969 GATCCTCAAGACATGCTGAGGTATTTTCA
119 GAGCCTCAAGACACGCTGAGGTATTTTCA
* ** * *
114768998 ATTTTTGTCTTTCAAAAAAATCAACTC-ATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAG
1 ATTTCTGT-TTTCAAAAAAATCAACTCAATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* *
114769062 GTAATTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCGTCAGG
65 GTAATTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
*
114769125 GCACGCTGAGGTATTTTCA
129 ACACGCTGAGGTATTTTCA
*
114769144 ATTTCTGCTTTC
1 ATTTCTGTTTTC
114769156 CAATTTCTGC
Statistics
Matches: 645, Mismatches: 76, Indels: 94
0.79 0.09 0.12
Matches are distributed among these distances:
143 2 0.00
144 46 0.07
145 91 0.14
146 129 0.20
147 33 0.05
148 19 0.03
149 9 0.01
150 7 0.01
151 41 0.06
152 7 0.01
155 50 0.08
156 33 0.05
157 22 0.03
158 85 0.13
159 6 0.01
160 4 0.01
161 23 0.04
162 4 0.01
163 33 0.05
164 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (147 bp):
ATTTCTGTTTTCAAAAAAATCAACTCAATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
ACGCTGAGGTATTTTCA
Found at i:114769161 original size:14 final size:15
Alignment explanation
Indices: 114769142--114769170 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
114769132 GAGGTATTTT
114769142 CAATTTCTG-CTTTC
1 CAATTTCTGCCTTTC
114769156 CAATTTCTGCCTTTC
1 CAATTTCTGCCTTTC
114769171 AAAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.31, G:0.07, T:0.48
Consensus pattern (15 bp):
CAATTTCTGCCTTTC
Found at i:114771192 original size:68 final size:69
Alignment explanation
Indices: 114771081--114771251 Score: 292
Period size: 68 Copynumber: 2.5 Consensus size: 69
114771071 TGAATTTCTA
*
114771081 TATTATTATTATTATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTA
1 TATTATTATTATTATTATTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTA
114771146 ATAT
66 ATAT
114771150 TATTATTATTATTATTATTA-TTATTATTATTACTGTTATGTACATATTATTTATACTATACTTA
1 TATTATTATTATTATTATTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTA
114771214 ATAT
66 ATAT
114771218 TATTATTATTATTATTACATTTAC-TATTATTATT
1 TATTATTATTATTATT--A-TTACTTATTATTATT
114771252 TATAAATATT
Statistics
Matches: 97, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
68 64 0.66
69 19 0.20
70 1 0.01
71 13 0.13
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (69 bp):
TATTATTATTATTATTATTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTA
ATAT
Found at i:114771251 original size:3 final size:3
Alignment explanation
Indices: 114771081--114771234 Score: 100
Period size: 3 Copynumber: 49.7 Consensus size: 3
114771071 TGAATTTCTA
* * * *
114771081 TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT
* *
114771129 TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
114771174 TAT TAT TAC TGT TAT GTACA TAT TAT T-T ATAC TA- TACT TAA TAT TAT
1 TAT TAT TAT TAT TAT -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT TAT
114771221 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
114771235 CATTTACTAT
Statistics
Matches: 118, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
2 6 0.05
3 97 0.82
4 15 0.13
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:114771428 original size:3 final size:3
Alignment explanation
Indices: 114771422--114771473 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
114771412 CTATTATTGC
* *
114771422 TAT TAT TGT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
114771470 TAT T
1 TAT T
114771474 TATATTTATA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:114779798 original size:46 final size:46
Alignment explanation
Indices: 114779738--114779957 Score: 253
Period size: 46 Copynumber: 5.0 Consensus size: 46
114779728 TTTGACATGA
* * * * * *
114779738 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
*** *
114779784 TGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGT
*
114779830 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
114779876 TGCCATGGTATCTTTCAACCATGGTCTT--ACA----C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
114779914 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAG
114779958 AAAGCACACT
Statistics
Matches: 151, Mismatches: 13, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
38 34 0.23
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.03
46 103 0.68
47 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
Found at i:114779921 original size:38 final size:38
Alignment explanation
Indices: 114779870--114779945 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
114779860 ACATTTTATA
114779870 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
114779908 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
114779946 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Done.