Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 378 of 438
Found at i:118001336 original size:88 final size:86
Alignment explanation
Indices: 118001196--118001394 Score: 222
Period size: 88 Copynumber: 2.3 Consensus size: 86
118001186 TCAACTAATT
* * *
118001196 TCTCGCAATATGAGTTGACTCTTTTAAAATAGACATTAAAAACAGAAATTGAAAATAGCTC-AGC
1 TCTCGCAATATGAGTT-AAT-TTTTAAAACAGACATTAAAAACAGAAATTGAAAATACCTCGA-C
*
118001260 ACGTGAGCCAAGGCTCAACTCACC
63 ACGTGACCCAAGGCTCAACTCACC
* **
118001284 TCTTGCAATATGAGTTAATTTTTGAAAACAGA-ATTTGAAAAACAGATTTTGAAAATACCTCGAC
1 TCTCGCAATATGAGTTAATTTTT-AAAACAGACA-TT-AAAAACAGAAATTGAAAATACCTCGAC
* * * *
118001348 ATGTTACCCAAGGCTCAACTGACT
63 ACGTGACCCAAGGCTCAACTCACC
*
118001372 TCTCGCAATATGAGTTGATTTTT
1 TCTCGCAATATGAGTTAATTTTT
118001395 TTTTTGAAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
86 5 0.05
87 11 0.12
88 77 0.82
89 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (86 bp):
TCTCGCAATATGAGTTAATTTTTAAAACAGACATTAAAAACAGAAATTGAAAATACCTCGACACG
TGACCCAAGGCTCAACTCACC
Found at i:118001527 original size:73 final size:73
Alignment explanation
Indices: 118001360--118001781 Score: 327
Period size: 73 Copynumber: 5.5 Consensus size: 73
118001350 GTTACCCAAG
* * *
118001360 GCTCAACTGACTTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACATAAATTAAAGTAATACC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTG--AAACATAAATTGAA--AATACC
** *
118001425 TCAGTGTATGATCTGAA
57 TCAGTGCGTGATTTGAA
118001442 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAATCATAAATTGAAAATACCTCAGTGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-CATAAATTGAAAATACCTCAGTGCG
118001506 TGATTTGAA
65 TGATTTGAA
* * * * *
118001515 GCTCAACTCACCTCTCCCAATATGAATTGATTTTTGAAACAAAAATTGAAAA-ACAGAATTTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAATAC-----CT--C
* * * *
118001579 AATACCTTGGCATTCTGAG
59 AGT-GCGT-G-ATT-TGAA
* * * *
118001598 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACATTAATTGAGAATACATCAGT--G
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACATAAATTGAAAATACCTCAGTGCG
* *
118001661 TGACTTGAG
65 TGATTTGAA
* *
118001670 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGATAGAAATTGAAAATACCTCA--AC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAT--AAATTGAAAATACCTCAGTGC
118001733 GTG-TCTTGAA
64 GTGAT-TTGAA
* * * *
118001743 GATCAACTCAACTCTTGCAATATGAGTTGATTTCTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
118001782 ATAGAAATAA
Statistics
Matches: 283, Mismatches: 37, Indels: 49
0.77 0.10 0.13
Matches are distributed among these distances:
71 11 0.04
72 35 0.12
73 123 0.43
74 7 0.02
75 11 0.04
77 6 0.02
78 2 0.01
79 2 0.01
80 3 0.01
81 1 0.00
82 31 0.11
83 30 0.11
84 19 0.07
85 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (73 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAATACCTCAGTGCGT
GATTTGAA
Found at i:118001751 original size:228 final size:234
Alignment explanation
Indices: 118001238--118001781 Score: 608
Period size: 228 Copynumber: 2.3 Consensus size: 234
118001228 ACATTAAAAA
* *** * *
118001238 CAGAAATTGAAAATAGCTCAGCACGTGA-GCCAAGGCTCAACTCACCTCTTGCAATATGAGTTAA
1 CAGAAATTGAAAATACCTCAG-ACGTGATTTGAA-GATCAACTCACCTCTTGCAATATGAGTTGA
* * *
118001302 TTTTTGAAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCGACATGTTACCCAAGGCTCAAC
64 TTTTTG-AAACAAAAATTGAAAAACAGAATTTGAAAATACCTCGACA-GTTA-CCAAGGCTCAAC
* * *
118001367 TGACTTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACATAAATTAAAGTAATACCTCAGTGT
126 TCACCTCTCGCAATATGAGTTGA---TTTTTTTG-AAAACATAAATTAAAGTAATACATCAGTG-
118001432 ATGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAT
186 ATGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAT
* * * ** *
118001481 CATAAATTGAAAATACCTCAGTGCGTGATTTGAAGCTCAACTCACCTCTCCCAATATGAATTGAT
1 CAGAAATTGAAAATACCTCAG-ACGTGATTTGAAGATCAACTCACCTCTTGCAATATGAGTTGAT
* * ** *
118001546 TTTTGAAACAAAAATTGAAAAACAGAATTTGAAAATACCTTGGCA-TT-CTGAGGTTCAACTCAC
65 TTTTGAAACAAAAATTGAAAAACAGAATTTGAAAATACCTCGACAGTTACCAAGGCTCAACTCAC
* *
118001609 CTCTCGCAATATGAGTTGA-TTTTTTG-AAACATTAATT-GAG-AATACATCAGTG-TGA-CTTG
130 CTCTCGCAATATGAGTTGATTTTTTTGAAAACATAAATTAAAGTAATACATCAGTGATGATC-TG
*
118001668 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGAT
194 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--AA-AT
*
118001712 -AGAAATTGAAAATACCTCA-ACGTG-TCTTGAAGATCAACTCAACTCTTGCAATATGAGTTGAT
1 CAGAAATTGAAAATACCTCAGACGTGAT-TTGAAGATCAACTCACCTCTTGCAATATGAGTTGAT
*
118001774 TTCTGAAA
65 TTTTGAAA
118001782 ATAGAAATAA
Statistics
Matches: 262, Mismatches: 33, Indels: 27
0.81 0.10 0.08
Matches are distributed among these distances:
227 2 0.01
228 83 0.32
230 31 0.12
231 4 0.02
232 10 0.04
234 7 0.03
238 30 0.11
240 2 0.01
242 35 0.13
243 56 0.21
244 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (234 bp):
CAGAAATTGAAAATACCTCAGACGTGATTTGAAGATCAACTCACCTCTTGCAATATGAGTTGATT
TTTGAAACAAAAATTGAAAAACAGAATTTGAAAATACCTCGACAGTTACCAAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTTGAAAACATAAATTAAAGTAATACATCAGTGATGATCTGAA
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAT
Found at i:118010084 original size:4 final size:4
Alignment explanation
Indices: 118010077--118010108 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
118010067 ATGTACATAC
*
118010077 AATG AATG AATG AATG AATG AATG AATA AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG
118010109 TTAAGTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (4 bp):
AATG
Found at i:118014007 original size:20 final size:22
Alignment explanation
Indices: 118013984--118014039 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
118013974 AATGCTACAT
118013984 AAATATGTACATAT-ATATT-A
1 AAATATGTACATATAATATTGA
**
118014004 AAATAAATACATAATAATATTGA
1 AAATATGTACAT-ATAATATTGA
*
118014027 AAGTATGTACATA
1 AAATATGTACATA
118014040 ATAGTGTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 10 0.36
21 2 0.07
22 6 0.21
23 10 0.36
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (22 bp):
AAATATGTACATATAATATTGA
Found at i:118014038 original size:23 final size:22
Alignment explanation
Indices: 118013984--118014065 Score: 69
Period size: 23 Copynumber: 3.7 Consensus size: 22
118013974 AATGCTACAT
118013984 AAATATGTACAT-AT-ATATTA
1 AAATATGTACATAATAATATTA
**
118014004 AAATAAATACATAATAATATTGA
1 AAATATGTACATAATAATATT-A
* * *
118014027 AAGTATGTACATAATAGTGTTAA
1 AAATATGTACATAATAATATT-A
**
118014050 AAATACATACATAATA
1 AAATATGTACATAATA
118014066 TAGCTATTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
20 10 0.21
21 2 0.04
22 5 0.10
23 31 0.65
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (22 bp):
AAATATGTACATAATAATATTA
Found at i:118014082 original size:2 final size:2
Alignment explanation
Indices: 118014075--118014103 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
118014065 ATAGCTATTA
118014075 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
118014104 CACGTACGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:118014171 original size:25 final size:26
Alignment explanation
Indices: 118014129--118014199 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
118014119 GTAAAAAATG
* * *
118014129 TAAT-ATAGTATTAGAAATATATACC
1 TAATAATAGTATAAAAAATATATAAC
*
118014154 TGA-AATAGTATAAAAAATATATAAC
1 TAATAATAGTATAAAAAATATATAAC
*
118014179 TAATAATA-TTTAAAAAATATA
1 TAATAATAGTATAAAAAATATA
118014200 CATAATATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (26 bp):
TAATAATAGTATAAAAAATATATAAC
Found at i:118014183 original size:23 final size:23
Alignment explanation
Indices: 118014133--118014214 Score: 62
Period size: 25 Copynumber: 3.5 Consensus size: 23
118014123 AAAATGTAAT
* * *
118014133 ATAGTATTAGAAATATATACCTGAA
1 ATAGTATAAAAAATATATAACT--A
118014158 ATAGTATAAAAAATATATAACTA
1 ATAGTATAAAAAATATATAACTA
* *
118014181 ATAATATTTAAAAA-ATAT-ACATA
1 ATAGTA-TAAAAAATATATAAC-TA
118014204 ATA-TATAAAAA
1 ATAGTATAAAAA
118014215 TATGATATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
21 5 0.10
22 4 0.08
23 15 0.31
24 6 0.12
25 19 0.39
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (23 bp):
ATAGTATAAAAAATATATAACTA
Found at i:118014257 original size:11 final size:11
Alignment explanation
Indices: 118014156--118014260 Score: 61
Period size: 11 Copynumber: 8.8 Consensus size: 11
118014146 TATATACCTG
118014156 AAATAGTATAAA
1 AAATA-TATAAA
118014168 AAATATATAACTA
1 AAATATATAA--A
*
118014181 ATAATAT-TTAA
1 A-AATATATAAA
*
118014192 AAA-ATATACA
1 AAATATATAAA
*
118014202 TAATATATAAA
1 AAATATATAAA
118014213 AATATGATATTAAA
1 AA-AT-ATA-TAAA
*
118014227 AGCATATATACATA
1 A-AATATATA-A-A
*
118014241 ACATATATAAA
1 AAATATATAAA
118014252 AAATATATA
1 AAATATATA
118014261 TATAAAATAG
Statistics
Matches: 74, Mismatches: 8, Indels: 23
0.70 0.08 0.22
Matches are distributed among these distances:
9 2 0.03
10 6 0.08
11 23 0.31
12 10 0.14
13 19 0.26
14 14 0.19
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (11 bp):
AAATATATAAA
Found at i:118014259 original size:13 final size:13
Alignment explanation
Indices: 118014204--118014269 Score: 53
Period size: 13 Copynumber: 5.1 Consensus size: 13
118014194 AATATACATA
118014204 ATATAT-AAAAAT
1 ATATATAAAAAAT
* **
118014216 ATGATATTAAAAGC
1 AT-ATATAAAAAAT
* * *
118014230 ATATATACATAAC
1 ATATATAAAAAAT
118014243 ATATATAAAAAAT
1 ATATATAAAAAAT
*
118014256 ATATATATAAAAT
1 ATATATAAAAAAT
118014269 A
1 A
118014270 GTATTAGAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
12 2 0.05
13 34 0.81
14 6 0.14
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (13 bp):
ATATATAAAAAAT
Found at i:118014375 original size:21 final size:21
Alignment explanation
Indices: 118014346--118014397 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
118014336 TAATACTACC
* * *
118014346 TAAATATATACGTATATATAT
1 TAAAAATATACGCATATATAA
* *
118014367 TAAAGATATATGCATATATAA
1 TAAAAATATACGCATATATAA
118014388 TAAAAATATA
1 TAAAAATATA
118014398 ATAATAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.37
Consensus pattern (21 bp):
TAAAAATATACGCATATATAA
Found at i:118014401 original size:3 final size:3
Alignment explanation
Indices: 118014384--118014442 Score: 102
Period size: 3 Copynumber: 20.0 Consensus size: 3
118014374 ATATGCATAT
*
118014384 ATA ATA AAA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
118014431 ATA ATA ATA ATA
1 ATA ATA ATA ATA
118014443 TTGAAATAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:118015216 original size:6 final size:7
Alignment explanation
Indices: 118015203--118015259 Score: 93
Period size: 7 Copynumber: 8.6 Consensus size: 7
118015193 AAAAGGTAAA
118015203 ATTTTTT
1 ATTTTTT
118015210 A-TTTTT
1 ATTTTTT
118015216 ATTTTTT
1 ATTTTTT
118015223 ATTTTTT
1 ATTTTTT
118015230 ATTTTTT
1 ATTTTTT
118015237 ATTTTTT
1 ATTTTTT
118015244 A-TTTTT
1 ATTTTTT
118015250 A-TTTTT
1 ATTTTTT
118015256 ATTT
1 ATTT
118015260 CCTTTAAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.38
7 30 0.62
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
ATTTTTT
Found at i:118015228 original size:14 final size:13
Alignment explanation
Indices: 118015203--118015259 Score: 89
Period size: 13 Copynumber: 4.3 Consensus size: 13
118015193 AAAAGGTAAA
118015203 ATTTTTTATTTTT
1 ATTTTTTATTTTT
118015216 ATTTTTTATTTTTT
1 ATTTTTTA-TTTTT
118015230 ATTTTTTATTTTT
1 ATTTTTTATTTTT
118015243 -TATTTTTATTTTT
1 AT-TTTTTATTTTT
118015256 ATTT
1 ATTT
118015260 CCTTTAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
12 1 0.02
13 26 0.63
14 14 0.34
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
ATTTTTTATTTTT
Found at i:118018477 original size:27 final size:27
Alignment explanation
Indices: 118018446--118018502 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
118018436 AGCATCATGG
*
118018446 TATTAATTTCCCTTGAATTTTCTTCTT
1 TATTAATTTCCCTTGAATTTGCTTCTT
118018473 TATTAATTTCCCTTGAATTTGCTTCTT
1 TATTAATTTCCCTTGAATTTGCTTCTT
118018500 TAT
1 TAT
118018503 CTTCATCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.18, G:0.05, T:0.58
Consensus pattern (27 bp):
TATTAATTTCCCTTGAATTTGCTTCTT
Found at i:118029821 original size:20 final size:20
Alignment explanation
Indices: 118029798--118029855 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
118029788 ATTTAAGTTA
118029798 AAAAATTATTAAAATATTAT
1 AAAAATTATTAAAATATTAT
* *
118029818 AAAAATTATAAAAAAATTAT
1 AAAAATTATTAAAATATTAT
**
118029838 AAATTTTATT-AAATATTA
1 AAAAATTATTAAAATATTA
118029856 GAATTTTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 7 0.22
20 25 0.78
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATTATTAAAATATTAT
Found at i:118029825 original size:9 final size:9
Alignment explanation
Indices: 118029798--118029831 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
118029788 ATTTAAGTTA
118029798 AAAAATTATT
1 AAAAATTA-T
118029808 AAAATATTAT
1 AAAA-ATTAT
118029818 AAAAATTAT
1 AAAAATTAT
118029827 AAAAA
1 AAAAA
118029832 AATTATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 10 0.43
10 9 0.39
11 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:118029838 original size:11 final size:11
Alignment explanation
Indices: 118029797--118029840 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
118029787 TATTTAAGTT
*
118029797 AAAAAATTATT
1 AAAAAATTATA
*
118029808 AAAATATTAT-
1 AAAAAATTATA
118029818 -AAAAATTATA
1 AAAAAATTATA
118029828 AAAAAATTATA
1 AAAAAATTATA
118029839 AA
1 AA
118029841 TTTTATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 8 0.28
11 21 0.72
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAAAATTATA
Found at i:118029880 original size:9 final size:10
Alignment explanation
Indices: 118029802--118029888 Score: 51
Period size: 11 Copynumber: 9.0 Consensus size: 10
118029792 AAGTTAAAAA
118029802 ATTATTAAAAT
1 ATTATT-AAAT
*
118029813 ATTA-TAAAA
1 ATTATTAAAT
* *
118029822 ATTATAAAAAA
1 ATTAT-TAAAT
118029833 ATTA-TAAAT
1 ATTATTAAAT
*
118029842 TTTATTAAAT
1 ATTATTAAAT
*
118029852 ATTA--GAAT
1 ATTATTAAAT
*
118029860 -TT-TTAAAA
1 ATTATTAAAT
118029868 ATATATTAAAT
1 AT-TATTAAAT
118029879 ATTATTAAAT
1 ATTATTAAAT
118029889 CAAACAAGGG
Statistics
Matches: 58, Mismatches: 10, Indels: 17
0.68 0.12 0.20
Matches are distributed among these distances:
7 2 0.03
8 5 0.09
9 14 0.24
10 18 0.31
11 19 0.33
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (10 bp):
ATTATTAAAT
Found at i:118030424 original size:30 final size:30
Alignment explanation
Indices: 118030390--118030493 Score: 97
Period size: 30 Copynumber: 3.5 Consensus size: 30
118030380 CATATTACAT
118030390 GGTTTAATTAATTGCTAACTTTCTATTAAA
1 GGTTTAATTAATTGCTAACTTTCTATTAAA
* * * *
118030420 GGTTTAATTGATTG-T-ATTTTTTGA-CAAGA
1 GGTTTAATTAATTGCTAACTTTCT-ATTAA-A
* * *
118030449 GGCTCAATTAATTGCTAACTTTCAATTAAA
1 GGTTTAATTAATTGCTAACTTTCTATTAAA
*
118030479 GGTTTAATTGATTGC
1 GGTTTAATTAATTGC
118030494 ACTTTTTAAC
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
28 7 0.13
29 14 0.25
30 28 0.51
31 6 0.11
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (30 bp):
GGTTTAATTAATTGCTAACTTTCTATTAAA
Found at i:118030487 original size:59 final size:59
Alignment explanation
Indices: 118030395--118030520 Score: 191
Period size: 59 Copynumber: 2.1 Consensus size: 59
118030385 TACATGGTTT
* * * * *
118030395 AATTAATTGCTAACTTTCTATTAAAGGTTTAATTGATTGTATTTTTTGACAA-GAGGCTC
1 AATTAATTGCTAACTTTCAATTAAAGGTTTAATTGATTGCACTTTTTAACAATG-GGATC
118030454 AATTAATTGCTAACTTTCAATTAAAGGTTTAATTGATTGCACTTTTTAACAATGGGATC
1 AATTAATTGCTAACTTTCAATTAAAGGTTTAATTGATTGCACTTTTTAACAATGGGATC
118030513 AATTAATT
1 AATTAATT
118030521 TTATAATTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
59 60 0.98
60 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (59 bp):
AATTAATTGCTAACTTTCAATTAAAGGTTTAATTGATTGCACTTTTTAACAATGGGATC
Found at i:118031678 original size:27 final size:26
Alignment explanation
Indices: 118031635--118031687 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
118031625 TTATGTTATT
*
118031635 TTAAATACTTTTTAAGG-CTTTTTAA
1 TTAAATACTTTTCAAGGTCTTTTTAA
118031660 TTAAATAAGCTTTTCAAGGTCTTTTTAA
1 TTAAAT-A-CTTTTCAAGGTCTTTTTAA
118031688 AGGCATTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 1 0.04
27 9 0.38
28 8 0.33
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.49
Consensus pattern (26 bp):
TTAAATACTTTTCAAGGTCTTTTTAA
Found at i:118032781 original size:5 final size:5
Alignment explanation
Indices: 118032771--118032795 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
118032761 AGGTATAAAG
118032771 GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA
118032796 TGACATTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:118042236 original size:12 final size:12
Alignment explanation
Indices: 118042219--118042251 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
118042209 TGGCCCGCCC
118042219 ATATTAATTTTT
1 ATATTAATTTTT
118042231 ATATT-ATTTTT
1 ATATTAATTTTT
118042242 ATA-TAATTTT
1 ATATTAATTTT
118042252 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:118043567 original size:6 final size:6
Alignment explanation
Indices: 118043558--118043602 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
118043548 TAAAAACAAA
* *
118043558 ATAAAC ATAAA- ATAAAA ATAAAG ATAAAG ATAAAG ATAAAG ATAA
1 ATAAAG ATAAAG ATAAAG ATAAAG ATAAAG ATAAAG ATAAAG ATAA
118043603 TCGGACTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
5 5 0.14
6 32 0.86
ACGTcount: A:0.71, C:0.02, G:0.09, T:0.18
Consensus pattern (6 bp):
ATAAAG
Found at i:118045191 original size:8 final size:8
Alignment explanation
Indices: 118045168--118045204 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
118045158 ATAGAATAAC
118045168 AAAT-AAG
1 AAATAAAG
118045175 AAA-AAAG
1 AAATAAAG
118045182 AAATAAAG
1 AAATAAAG
*
118045190 AAATAAAA
1 AAATAAAG
118045198 AAATAAA
1 AAATAAA
118045205 TAAAACTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
7 9 0.33
8 18 0.67
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (8 bp):
AAATAAAG
Found at i:118049757 original size:26 final size:26
Alignment explanation
Indices: 118049728--118049835 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
118049718 TGATACAAAT
118049728 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
118049754 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
118049780 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
118049806 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
118049832 TGAT
1 TGAT
118049836 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:118051513 original size:54 final size:54
Alignment explanation
Indices: 118051429--118051572 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
118051419 TGGAGGAAGC
*
118051429 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
118051483 GTCCTGGTTGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
118051537 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
118051573 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:118051583 original size:27 final size:27
Alignment explanation
Indices: 118051432--118051590 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
118051422 AGGAAGCGTC
* *
118051432 CTGGTGGCTATGCCACAATTATTTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
118051459 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
118051486 CTGGTTGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
118051513 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
118051540 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
118051567 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
118051591 GCAGGCTCGC
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:118056426 original size:18 final size:18
Alignment explanation
Indices: 118056403--118056440 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
118056393 CCTTTCTTGG
* *
118056403 TTAGTATTTTTTCTATTT
1 TTAGTAATTTTTATATTT
118056421 TTAGTAATTTTTATATTT
1 TTAGTAATTTTTATATTT
118056439 TT
1 TT
118056441 GAGCTCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (18 bp):
TTAGTAATTTTTATATTT
Found at i:118057165 original size:40 final size:39
Alignment explanation
Indices: 118057120--118057249 Score: 124
Period size: 40 Copynumber: 3.4 Consensus size: 39
118057110 GTATTTGTCA
*
118057120 GTTTATCCGATTAGTGCTGGGCACACATTTGATATCTTCG
1 GTTTATCCGACTAGTGCTGGGCACACATTTGATAT-TTCG
* * * * * *
118057160 GTTTATCTGACTAGTGTTAGGCAGAC--CT-A-ATTGTTG
1 GTTTATCCGACTAGTGCTGGGCACACATTTGATATT-TCG
* *
118057196 GTTTATCCGACTAGTACTGGGTACACATTTGATATTGTCG
1 GTTTATCCGACTAGTGCTGGGCACACATTTGATATT-TCG
118057236 GTTTATCCGACTAG
1 GTTTATCCGACTAG
118057250 CGTTGGGCGT
Statistics
Matches: 70, Mismatches: 15, Indels: 10
0.74 0.16 0.11
Matches are distributed among these distances:
35 1 0.01
36 24 0.34
37 1 0.01
38 2 0.03
39 1 0.01
40 41 0.59
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.38
Consensus pattern (39 bp):
GTTTATCCGACTAGTGCTGGGCACACATTTGATATTTCG
Found at i:118057270 original size:76 final size:75
Alignment explanation
Indices: 118057120--118057279 Score: 191
Period size: 76 Copynumber: 2.1 Consensus size: 75
118057110 GTATTTGTCA
* * * *
118057120 GTTTATCCGATTAGTGCTGGGCACACATTTGATATCTTCGGTTTATCTGACTAGTGTTAGGCAGA
1 GTTTATCCGACTAGTACTGGGCACACATTTGATATCTTCGGTTTATCCGACTAGCGTTAGGCAGA
*
118057185 CCTAATTGTTG
66 -CAAATTGTTG
* *
118057196 GTTTATCCGACTAGTACTGGGTACACATTTGATAT-TGTCGGTTTATCCGACTAGCGTTGGGC-G
1 GTTTATCCGACTAGTACTGGGCACACATTTGATATCT-TCGGTTTATCCGACTAGCGTTAGGCAG
118057259 TA-AAACGTTGTTG
65 -ACAAA--TTGTTG
118057272 GTTTATCC
1 GTTTATCC
118057280 AACCAGTGCA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
74 2 0.03
75 2 0.03
76 69 0.95
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (75 bp):
GTTTATCCGACTAGTACTGGGCACACATTTGATATCTTCGGTTTATCCGACTAGCGTTAGGCAGA
CAAATTGTTG
Found at i:118058861 original size:40 final size:40
Alignment explanation
Indices: 118058797--118058873 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
118058787 ACTATGTTTG
* **
118058797 GCACTTAGTGTGCTATTCGAAATAGCTTTGGCTATATAAA
1 GCACTTAGTGTGCAATTCGAAATAGCTTCAGCTATATAAA
*
118058837 GCACTTAGTGTGCGAATT-GGAATAGCTTCAGCTATAT
1 GCACTTAGTGTGC-AATTCGAAATAGCTTCAGCTATAT
118058874 GTGGCACTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.91
41 3 0.09
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (40 bp):
GCACTTAGTGTGCAATTCGAAATAGCTTCAGCTATATAAA
Found at i:118058881 original size:40 final size:40
Alignment explanation
Indices: 118058795--118058887 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 40
118058785 CGACTATGTT
* **
118058795 TGGCACTTAGTGTGCTATTCGAAATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCAATTCGAAATAGCTTCAGCTATATA
** * *
118058835 AAGCACTTAGTGTGCGAATT-GGAATAGCTTCAGCTATATG
1 TGGCACTTAGTGTGC-AATTCGAAATAGCTTCAGCTATATA
*
118058875 TGGCACTAAGTGT
1 TGGCACTTAGTGT
118058888 TCGATACCGT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
40 39 0.93
41 3 0.07
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATTCGAAATAGCTTCAGCTATATA
Found at i:118065646 original size:93 final size:93
Alignment explanation
Indices: 118065531--118065719 Score: 369
Period size: 93 Copynumber: 2.0 Consensus size: 93
118065521 AGTACTAGCT
*
118065531 AGCCCGTAACCTAATTTTTGAATTTGTTGATGAATTTGTAAGTTGCCATTGATGAATGCTTGAGA
1 AGCCCGTAACCTAATTTTTGAATTTGTTGATGAATTTGTAAGTGGCCATTGATGAATGCTTGAGA
118065596 TTTTGAATGTTTAATGATGAATAATGAA
66 TTTTGAATGTTTAATGATGAATAATGAA
118065624 AGCCCGTAACCTAATTTTTGAATTTGTTGATGAATTTGTAAGTGGCCATTGATGAATGCTTGAGA
1 AGCCCGTAACCTAATTTTTGAATTTGTTGATGAATTTGTAAGTGGCCATTGATGAATGCTTGAGA
118065689 TTTTGAATGTTTAATGATGAATAATGAA
66 TTTTGAATGTTTAATGATGAATAATGAA
118065717 AGC
1 AGC
118065720 TTGCTGCTTG
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 95 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (93 bp):
AGCCCGTAACCTAATTTTTGAATTTGTTGATGAATTTGTAAGTGGCCATTGATGAATGCTTGAGA
TTTTGAATGTTTAATGATGAATAATGAA
Found at i:118066318 original size:40 final size:41
Alignment explanation
Indices: 118066232--118066328 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 41
118066222 CAACTATGTT
* *
118066232 TGGCACTTATTGTGCG-ATTCAAAATAGCTTTGGCTATATG
1 TGGCACTTAATGTGCGAATTCAAAATAGCTTCGGCTATATG
** * **
118066272 AAGCACTTAGTGTGCGAATT-GGAATAGCTTCGGCTATATG
1 TGGCACTTAATGTGCGAATTCAAAATAGCTTCGGCTATATG
*
118066312 TGGCACTGAATGTGCGA
1 TGGCACTTAATGTGCGA
118066329 TACCGTGATA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
40 43 0.93
41 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (41 bp):
TGGCACTTAATGTGCGAATTCAAAATAGCTTCGGCTATATG
Found at i:118066692 original size:31 final size:30
Alignment explanation
Indices: 118066635--118066693 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
118066625 GTATATACTC
*
118066635 AAAATTTAAGGGATTAAAGTATAAATATGA
1 AAAATTTAAGGGATTAAAGTACAAATATGA
*
118066665 AAAATTTGAAGGG-TTAATAGTGCAAATAT
1 AAAATTT-AAGGGATTAA-AGTACAAATAT
118066694 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.49, C:0.02, G:0.19, T:0.31
Consensus pattern (30 bp):
AAAATTTAAGGGATTAAAGTACAAATATGA
Found at i:118071368 original size:26 final size:26
Alignment explanation
Indices: 118071289--118071370 Score: 110
Period size: 26 Copynumber: 3.2 Consensus size: 26
118071279 TGGTACAAAT
* *
118071289 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
118071315 TAAGAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
118071341 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
118071367 TGAT
1 TGAT
118071371 GGGCATTTCA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:118072998 original size:27 final size:27
Alignment explanation
Indices: 118072960--118073096 Score: 165
Period size: 27 Copynumber: 5.1 Consensus size: 27
118072950 AGCGTCCAGA
*
118072960 TGGCTATGCCACAATTATCTGATCTGG
1 TGGCTCTGCCACAATTATCTGATCTGG
118072987 TGGCTCTGCCAC-ATATATCTG-TCCTGG
1 TGGCTCTGCCACAAT-TATCTGAT-CTGG
* *
118073014 TGGCTATGCCATAATTATCTGATCTGG
1 TGGCTCTGCCACAATTATCTGATCTGG
* *
118073041 TGGCTCTTCCAC-ATATATCTGTTCTGG
1 TGGCTCTGCCACAAT-TATCTGATCTGG
118073068 TGGCTCTGCCACAA-TATCTGTATCTGG
1 TGGCTCTGCCACAATTATCTG-ATCTGG
118073095 TG
1 TG
118073097 ACTTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.12
27 79 0.84
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGGCTCTGCCACAATTATCTGATCTGG
Found at i:118073042 original size:54 final size:54
Alignment explanation
Indices: 118072960--118073096 Score: 222
Period size: 54 Copynumber: 2.5 Consensus size: 54
118072950 AGCGTCCAGA
118072960 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGG
* * *
118073014 TGGCTATGCCATAATTATCTGATCTGGTGGCTCTTCCACATATATCTGTTCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGG
*
118073068 TGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TGGCTATGCCACAATTATCTG-ATCTGGTG
118073097 ACTTCGTCAC
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.08
54 71 0.92
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGG
Found at i:118073107 original size:27 final size:26
Alignment explanation
Indices: 118072969--118073114 Score: 111
Period size: 27 Copynumber: 5.4 Consensus size: 26
118072959 ATGGCTATGC
*
118072969 CACAATTATCTG-ATCTGGTGGCTCTGC
1 CACAA-TATCTGTATCTGGTGGCTC-GT
* * *
118072996 CACATATATCTGT-CCTGGTGGCTATGC
1 CACA-ATATCTGTATCTGGTGGCT-CGT
* *
118073023 CATAATTATCTG-ATCTGGTGGCTCTT
1 CACAA-TATCTGTATCTGGTGGCTCGT
*
118073049 CCACATATATCTGT-TCTGGTGGCTCTGC
1 -CACA-ATATCTGTATCTGGTGGCTC-GT
*
118073077 CACAATATCTGTATCTGGTGACTTCGT
1 CACAATATCTGTATCTGGTGGC-TCGT
118073104 CACAATATCTG
1 CACAATATCTG
118073115 GCAGCCTCGT
Statistics
Matches: 96, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
26 9 0.09
27 83 0.86
28 4 0.04
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (26 bp):
CACAATATCTGTATCTGGTGGCTCGT
Found at i:118077559 original size:2 final size:2
Alignment explanation
Indices: 118077546--118077580 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
118077536 AACCAGAATA
*
118077546 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
118077581 AATTGAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:118078764 original size:57 final size:58
Alignment explanation
Indices: 118078676--118078794 Score: 213
Period size: 57 Copynumber: 2.1 Consensus size: 58
118078666 GTTGGAAGAA
*
118078676 AGAAATAGTCTCAGCTTTCCTTATAAAAGAGA-AAAAAAAGAAATAGTGTCAGTTTGG
1 AGAAATAGTCTCAGCTTTCCTTATAAAAGAGAGAAAAAAAGAAATAGTCTCAGTTTGG
*
118078733 AGAAATAGTCTTAGCTTTCCTTATAAAAGAGAGAAAAAAAGAAATAGTCTCAGTTTGG
1 AGAAATAGTCTCAGCTTTCCTTATAAAAGAGAGAAAAAAAGAAATAGTCTCAGTTTGG
118078791 AGAA
1 AGAA
118078795 GTTCATAACC
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
57 31 0.53
58 28 0.47
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (58 bp):
AGAAATAGTCTCAGCTTTCCTTATAAAAGAGAGAAAAAAAGAAATAGTCTCAGTTTGG
Found at i:118082508 original size:40 final size:40
Alignment explanation
Indices: 118082342--118082526 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
118082332 TTCGAATGAT
* * *
118082342 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
118082382 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
118082422 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
118082462 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
118082503 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
118082527 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:118082520 original size:80 final size:80
Alignment explanation
Indices: 118082342--118082529 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
118082332 TTCGAATGAT
* *
118082342 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
118082407 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
118082422 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
118082483 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
118082503 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
118082530 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:118090488 original size:40 final size:40
Alignment explanation
Indices: 118090322--118090506 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
118090312 TTCGAATGAT
* * *
118090322 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
118090362 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
118090402 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
118090442 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
118090483 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
118090507 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:118090500 original size:80 final size:80
Alignment explanation
Indices: 118090322--118090509 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
118090312 TTCGAATGAT
* *
118090322 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
118090387 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
118090402 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
118090463 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
118090483 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
118090510 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:118093155 original size:35 final size:35
Alignment explanation
Indices: 118093115--118093186 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 35
118093105 TTGTTAATTC
*
118093115 TTCTTTAAACGTGCTGAGTTCT-TTTTTTTTATTTG
1 TTCTTT-AACGTGCTGAGTTCTCTGTTTTTTATTTG
* * *
118093150 TTCTTTAATGTGTTGGGTTCTCTGTTTTTTATTTG
1 TTCTTTAACGTGCTGAGTTCTCTGTTTTTTATTTG
118093185 TT
1 TT
118093187 TTTTTTAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 12 0.38
35 20 0.62
ACGTcount: A:0.11, C:0.10, G:0.17, T:0.62
Consensus pattern (35 bp):
TTCTTTAACGTGCTGAGTTCTCTGTTTTTTATTTG
Found at i:118093178 original size:38 final size:38
Alignment explanation
Indices: 118093136--118093215 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
118093126 TGCTGAGTTC
* *
118093136 TTTTTT-TTTATTTGTTCTTTAATG-TGTTGGGTTCTCTG
1 TTTTTTATTTATTT-TT-TTTAAAGATGTTGGGTCCTCTG
* *
118093174 TTTTTTATTTGTTTTTTTTAAAGATGTTGGGTCCTTTG
1 TTTTTTATTTATTTTTTTTAAAGATGTTGGGTCCTCTG
118093212 TTTT
1 TTTT
118093216 AAAGATTCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 6 0.17
38 24 0.67
39 6 0.17
ACGTcount: A:0.10, C:0.06, G:0.17, T:0.66
Consensus pattern (38 bp):
TTTTTTATTTATTTTTTTTAAAGATGTTGGGTCCTCTG
Found at i:118095599 original size:36 final size:37
Alignment explanation
Indices: 118095559--118095635 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
118095549 GACTAAATAA
* * *
118095559 TAAAAATTGTAAAATTTGA-ATTTAGGGGTTGTTTTG
1 TAAAAACTATAAAATTTGAGATATAGGGGTTGTTTTG
** *
118095595 TAAAAACTATAATTTTTGAGGTATAGGGGTTGTTTTG
1 TAAAAACTATAAAATTTGAGATATAGGGGTTGTTTTG
118095632 TAAA
1 TAAA
118095636 TGCTGAAACA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 15 0.44
37 19 0.56
ACGTcount: A:0.34, C:0.01, G:0.22, T:0.43
Consensus pattern (37 bp):
TAAAAACTATAAAATTTGAGATATAGGGGTTGTTTTG
Found at i:118096560 original size:54 final size:55
Alignment explanation
Indices: 118096455--118096579 Score: 162
Period size: 54 Copynumber: 2.3 Consensus size: 55
118096445 GCTTAGTTTT
* * * *
118096455 ATTCCTTTAGACTATGGAGAACTTATATTACCTACCAATATAATTACTCAATTTG
1 ATTCCTTTAGACTATGGAGAACTTAAACTACCAACCAATACAATTACTCAATTTG
* * * **
118096510 ATTCC-TTAGACTATGGATAACTTAAACTACCAACTAATACATTTGGTCAATTTG
1 ATTCCTTTAGACTATGGAGAACTTAAACTACCAACCAATACAATTACTCAATTTG
118096564 ATTCCTTTAGACTATG
1 ATTCCTTTAGACTATG
118096580 TATTATGATT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 45 0.75
55 15 0.25
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (55 bp):
ATTCCTTTAGACTATGGAGAACTTAAACTACCAACCAATACAATTACTCAATTTG
Found at i:118100050 original size:20 final size:20
Alignment explanation
Indices: 118099987--118100042 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
118099977 TGATAAACAT
118099987 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
118100007 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
118100027 ATGTATGATATGCACA
1 ATGTATGATATGCACA
118100043 CGAGATGTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:118100194 original size:24 final size:24
Alignment explanation
Indices: 118100093--118100218 Score: 197
Period size: 23 Copynumber: 5.4 Consensus size: 24
118100083 GGAGGAAGTG
118100093 AAAAGGGCTTATG-CCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
*
118100115 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
118100139 AAAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
118100162 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
118100185 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
118100209 AAAAGAGGCT
1 AAAAG-GGCT
118100219 AGGCCTCCAG
Statistics
Matches: 96, Mismatches: 3, Indels: 7
0.91 0.03 0.07
Matches are distributed among these distances:
22 16 0.17
23 45 0.47
24 31 0.32
25 4 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:118100458 original size:31 final size:31
Alignment explanation
Indices: 118100423--118100486 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
118100413 CGTTTACAGT
118100423 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
118100454 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
118100485 AA
1 AA
118100487 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:118104325 original size:13 final size:13
Alignment explanation
Indices: 118104307--118104333 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
118104297 ATAAGCAGCA
118104307 AGAGGCTTTTGAG
1 AGAGGCTTTTGAG
118104320 AGAGGCTTTTGAG
1 AGAGGCTTTTGAG
118104333 A
1 A
118104334 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.37, T:0.30
Consensus pattern (13 bp):
AGAGGCTTTTGAG
Found at i:118108021 original size:25 final size:25
Alignment explanation
Indices: 118107992--118108039 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
118107982 TTATAATATG
* * *
118107992 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
118108017 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
118108040 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:118108108 original size:20 final size:20
Alignment explanation
Indices: 118108083--118108146 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
118108073 TAAACACGAT
118108083 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
118108103 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
118108123 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
118108143 ATGT
1 ATGT
118108147 TCATAAATGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:118108123 original size:11 final size:11
Alignment explanation
Indices: 118108087--118108141 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
118108077 CACGATATGT
118108087 ATGATATGCAC
1 ATGATATGCAC
* *
118108098 ATGACATG--T
1 ATGATATGCAC
118108107 ATGATATGCAC
1 ATGATATGCAC
*
118108118 ATGATATG--T
1 ATGATATGCAC
118108127 ATGATATGCAC
1 ATGATATGCAC
118108138 ATGA
1 ATGA
118108142 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:118108218 original size:24 final size:24
Alignment explanation
Indices: 118108191--118108320 Score: 199
Period size: 24 Copynumber: 5.4 Consensus size: 24
118108181 GGAGGAAGTG
118108191 AAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
118108215 AAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
118108239 CAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
118108263 -TAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
* *
118108286 TAAAAGGGCTTTTGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
118108310 TAAAAGAGGCT
1 AAAAAG-GGCT
118108321 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 22 0.22
24 74 0.74
25 4 0.04
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAAGGGCTTATGCCCCAGTTAT
Found at i:118108291 original size:47 final size:47
Alignment explanation
Indices: 118108192--118108313 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
118108182 GAGGAAGTGA
*
118108192 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
*
118108240 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
118108287 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
118108314 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
47 48 0.68
48 23 0.32
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:118108562 original size:31 final size:31
Alignment explanation
Indices: 118108527--118108590 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
118108517 CGTTTACAGT
118108527 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
118108558 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
118108589 AA
1 AA
118108591 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:118121596 original size:40 final size:40
Alignment explanation
Indices: 118121488--118121597 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
118121478 ATTGAATGAT
* * * * *
118121488 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
118121528 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
118121568 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
118121598 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:118121612 original size:40 final size:39
Alignment explanation
Indices: 118121488--118121637 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
118121478 ATTGAATGAT
* * * * * * *
118121488 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
118121528 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
118121568 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
118121608 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
118121638 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:118123174 original size:5 final size:5
Alignment explanation
Indices: 118123164--118123205 Score: 68
Period size: 5 Copynumber: 8.6 Consensus size: 5
118123154 AATTTGTGTG
*
118123164 TTATT TTATT TTTTT TTATT TTATT TTATT TTATT TT-TT TTA
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTA
118123206 CAAATTGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 4 0.12
5 30 0.88
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTATT
Found at i:118127583 original size:5 final size:5
Alignment explanation
Indices: 118127573--118127611 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
118127563 AATTTGTGTG
*
118127573 TTATT TTATTT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTA-TT TTAT-T TTATT TTATT TTATT TTATT TT
118127612 TTTCACATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 22 0.73
6 8 0.27
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:118130729 original size:2 final size:2
Alignment explanation
Indices: 118130722--118130755 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
118130712 TAGAACCCAT
* *
118130722 CA CA CA CA CA TA CA CA CA AA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
118130756 TACATATGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.44, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:118130738 original size:8 final size:8
Alignment explanation
Indices: 118130725--118130759 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
118130715 AACCCATCAC
118130725 ACACACAT
1 ACACACAT
*
118130733 ACACACAA
1 ACACACAT
*
118130741 ACACACAC
1 ACACACAT
118130749 ACACACAT
1 ACACACAT
118130757 ACA
1 ACA
118130760 TATGACACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.54, C:0.40, G:0.00, T:0.06
Consensus pattern (8 bp):
ACACACAT
Found at i:118131953 original size:26 final size:26
Alignment explanation
Indices: 118131924--118132031 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
118131914 TGGTACAAAT
118131924 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
118131950 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
118131976 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
118132002 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
118132028 TGAT
1 TGAT
118132032 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:118136819 original size:27 final size:27
Alignment explanation
Indices: 118136781--118136836 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
118136771 TAAGGTCAGG
*
118136781 TATCGATACTAGATGTAAAAATATCCA
1 TATCGATACTAGATGTAAAAACATCCA
118136808 TATCGATACTAGATGTAAAAACATCCA
1 TATCGATACTAGATGTAAAAACATCCA
118136835 TA
1 TA
118136837 CTTGAGTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.29
Consensus pattern (27 bp):
TATCGATACTAGATGTAAAAACATCCA
Found at i:118138570 original size:16 final size:16
Alignment explanation
Indices: 118138549--118138583 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
118138539 TGCTACTTGT
118138549 TTTCATT-TTATTTTTA
1 TTTCATTGTTA-TTTTA
118138565 TTTCATTGTTATTTTA
1 TTTCATTGTTATTTTA
118138581 TTT
1 TTT
118138584 ACTCATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTCATTGTTATTTTA
Found at i:118140231 original size:28 final size:27
Alignment explanation
Indices: 118140134--118140233 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
118140124 TTAGAATACT
**
118140134 TTAGTTTACCAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCC
* *
118140161 TTGGTTTATAAAATCACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCC
* *
118140188 TTAGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCC
* *
118140215 TTTTGTTTATAGAATTACC
1 -TTAGTTTATAAAATTACC
118140234 GGGATACCCC
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
27 46 0.77
28 14 0.23
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (27 bp):
TTAGTTTATAAAATTACCAAAATACCC
Found at i:118140266 original size:27 final size:27
Alignment explanation
Indices: 118140224--118140637 Score: 502
Period size: 27 Copynumber: 15.4 Consensus size: 27
118140214 CTTTTGTTTA
*
118140224 TAGAATTACCGGGATACCCCTGTAGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
*
118140251 TAGAATTCCCGAGATACCCCTGTAGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
*
118140278 TAGAATTACCG-GAATACCCCTGTAGAG
1 TAGAATTACCGAG-ATACCCCTGTAGGG
118140305 TAGAATTACCG-GAATACCCCTGTAGGG
1 TAGAATTACCGAG-ATACCCCTGTAGGG
*
118140332 TAGAATTACCG-GAATACTCCTGTAGGG
1 TAGAATTACCGAG-ATACCCCTGTAGGG
* *
118140359 TAGAATTACCGAAATACCCCTGTTGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
118140386 TAGAATTACC-AGAATACCCCTGTAGGG
1 TAGAATTACCGAG-ATACCCCTGTAGGG
*
118140413 TAGAATTACCG-GAATACCCCTATAGGG
1 TAGAATTACCGAG-ATACCCCTGTAGGG
118140440 TAGAATTACCG-GAATACCCCTGTAGGG
1 TAGAATTACCGAG-ATACCCCTGTAGGG
* * *
118140467 TAGAATTACCAAAATACCCCTATAGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
* *
118140494 TAGAATTACTGAAATACCCCTGTAGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
*
118140521 TAGAATTATCGCA-ATACCCCTGTAGGG
1 TAGAATTACCG-AGATACCCCTGTAGGG
* *
118140548 TAGAATTACCGAAATACCTCTGTAGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
* ** *
118140575 TCGAATTACTAAAATACCCCTGTAGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
* * *
118140602 TGGAATTACCGAGATA-CCTTGTGGGG
1 TAGAATTACCGAGATACCCCTGTAGGG
*
118140628 TAAAATTACC
1 TAGAATTACC
118140638 ATTTTGCCCC
Statistics
Matches: 345, Mismatches: 35, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
26 19 0.06
27 325 0.94
28 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (27 bp):
TAGAATTACCGAGATACCCCTGTAGGG
Found at i:118140289 original size:54 final size:54
Alignment explanation
Indices: 118140224--118140637 Score: 580
Period size: 54 Copynumber: 7.7 Consensus size: 54
118140214 CTTTTGTTTA
* * *
118140224 TAGAATTACCGGGATACCCCTGTAGGGTAGAATTCCCGAGATACCCCTGTAGGG
1 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
* *
118140278 TAGAATTACCGGAATACCCCTGTAGAGTAGAATTACCGGAATACCCCTGTAGGG
1 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
* *
118140332 TAGAATTACCGGAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTGTTGGG
1 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
* * *
118140386 TAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTATAGGG
1 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
* *
118140440 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAGGG
1 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
* * * *
118140494 TAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGG
1 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
* * * **
118140548 TAGAATTACCGAAATACCTCTGTAGGGTCGAATTACTAAAATACCCCTGTAGGG
1 TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
* * * *
118140602 TGGAATTACC-GAGATA-CCTTGTGGGGTAAAATTACC
1 TAGAATTACCGGA-ATACCCCTGTAGGGTAGAATTACC
118140638 ATTTTGCCCC
Statistics
Matches: 321, Mismatches: 38, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
53 15 0.05
54 306 0.95
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (54 bp):
TAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGG
Found at i:118141070 original size:22 final size:22
Alignment explanation
Indices: 118141040--118141101 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
118141030 AAGCCTTCTA
* *
118141040 ATTATGGCTTTGTGTCAACCTAG
1 ATTATGGCTCTGTGCCAACCT-G
118141063 A-TATGGCTCTGTGCCAACCTG
1 ATTATGGCTCTGTGCCAACCTG
118141084 ATTATGGC-CGTGTGCCAA
1 ATTATGGCTC-TGTGCCAA
118141102 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 3 0.09
22 31 0.89
23 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAACCTG
Found at i:118141290 original size:27 final size:27
Alignment explanation
Indices: 118141260--118141361 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
118141250 ATTCTGTTAA
* *
118141260 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
118141287 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
118141314 GTGGCTCTGCCACAATATCTGTATCTA
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
118141341 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
118141362 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:118141318 original size:54 final size:53
Alignment explanation
Indices: 118141260--118141361 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
118141250 ATTCTGTTAA
* * * * *
118141260 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCAC-AATATCTGTTCTG
* *
118141314 GTGGCTCTGCCACAATATCTGTATCTAGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATATCTG
118141362 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATATCTGTTCTG
Found at i:118141536 original size:6 final size:6
Alignment explanation
Indices: 118141521--118141624 Score: 54
Period size: 6 Copynumber: 16.8 Consensus size: 6
118141511 ATTCTGTTAC
* * * *
118141521 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTG-TCAC
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGAT--T
* * *
118141571 CTAATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT
1 CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT
118141620 CTGAT
1 CTGAT
118141625 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
5 5 0.07
6 58 0.78
7 8 0.11
8 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:118141549 original size:31 final size:32
Alignment explanation
Indices: 118141498--118141566 Score: 122
Period size: 31 Copynumber: 2.2 Consensus size: 32
118141488 TTGCATTTAC
*
118141498 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
118141530 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
118141561 ATTCTG
1 ATTCTG
118141567 TCACCTAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 29 0.81
32 7 0.19
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTG
Found at i:118141562 original size:19 final size:19
Alignment explanation
Indices: 118141540--118141604 Score: 103
Period size: 19 Copynumber: 3.4 Consensus size: 19
118141530 ATTCTGATTT
* * *
118141540 TGATTCTGTTACCTGATAC
1 TGATTCTGTCACCTAATTC
118141559 TGATTCTGTCACCTAATTC
1 TGATTCTGTCACCTAATTC
118141578 TGATTCTGTCACCTAATTC
1 TGATTCTGTCACCTAATTC
118141597 TGATTCTG
1 TGATTCTG
118141605 ATTCTGATTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (19 bp):
TGATTCTGTCACCTAATTC
Found at i:118141580 original size:25 final size:22
Alignment explanation
Indices: 118141552--118141610 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 22
118141542 ATTCTGTTAC
118141552 CTGATACTGATTCTGTCACCTAA
1 CTGAT-CTGATTCTGTCACCTAA
118141575 -T--TCTGATTCTGTCACCTAA
1 CTGATCTGATTCTGTCACCTAA
118141594 TTCTGATTCTGATTCTG
1 --CTGA-TCTGATTCTG
118141611 ATTCTAGTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
19 17 0.57
20 1 0.03
22 2 0.07
25 10 0.33
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (22 bp):
CTGATCTGATTCTGTCACCTAA
Found at i:118142449 original size:87 final size:87
Alignment explanation
Indices: 118142345--118142758 Score: 474
Period size: 87 Copynumber: 4.8 Consensus size: 87
118142335 AAAATATACC
* * * * * ** *
118142345 GGCACAAATAGTGCATCATCAGATATACTGAAGCAAATATACTAACACACACAGTGCATCATTGG
1 GGCACACACAGTGCATCATCGGATATACTAAAGAAAATATACTGGCACACACAGTGCATCATCGG
* *
118142410 ATGAAACTGAAACTACTATATT
66 ATGAAACCGAAGCTACTATATT
* * *
118142432 GGCACACACAGTGCATCATCGGATAAACCAAAGAAAATATACTGGTACACACAGTGCATCATCGG
1 GGCACACACAGTGCATCATCGGATATACTAAAGAAAATATACTGGCACACACAGTGCATCATCGG
*
118142497 ATGAAACCGAAGCTACTATACT
66 ATGAAACCGAAGCTACTATATT
* * *
118142519 GGCACACACAGTGCATCATCGAATA-AATCAAAGAAAATATACTGGTACACACAGTGCATCATCG
1 GGCACACACAGTGCATCATCGGATATACT-AAAGAAAATATACTGGCACACACAGTGCATCATCG
118142583 GATGAAACCGAAGCTACTATATT
65 GATGAAACCGAAGCTACTATATT
* * * *
118142606 GGCACACACAATGCATCGTCGGATAAACCAAAGAAAATATACTGGCACACACAGTGCATCATCGG
1 GGCACACACAGTGCATCATCGGATATACTAAAGAAAATATACTGGCACACACAGTGCATCATCGG
* ** * * *
118142671 CT-ATGCTGAAGCAAATATACTT
66 ATGAAACCGAAGCTACTATA-TT
* * * * * * **
118142693 -GCATACATAATGCATCATTGGATATACTGAAGCAAATATACTGGCACATGCAGTGCATCATCGG
1 GGCACACACAGTGCATCATCGGATATACTAAAGAAAATATACTGGCACACACAGTGCATCATCGG
118142757 AT
66 AT
118142759 ATACCAAAGT
Statistics
Matches: 283, Mismatches: 41, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
86 68 0.24
87 214 0.76
88 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (87 bp):
GGCACACACAGTGCATCATCGGATATACTAAAGAAAATATACTGGCACACACAGTGCATCATCGG
ATGAAACCGAAGCTACTATATT
Found at i:118142762 original size:43 final size:43
Alignment explanation
Indices: 118142311--118142759 Score: 441
Period size: 43 Copynumber: 10.4 Consensus size: 43
118142301 CCGGCACGTA
* * * * * *
118142311 AGTGCATCATCTGATAAATTGAAGAAAATATACCGGCACAAAT
1 AGTGCATCATCGGATAAACTGAAGCAAATATACTGGCACACAC
* * **
118142354 AGTGCATCATCAGATATACTGAAGCAAATATACTAACACACAC
1 AGTGCATCATCGGATAAACTGAAGCAAATATACTGGCACACAC
* * * * *
118142397 AGTGCATCATTGGATGAAACTGAAACTACTATATTGGCACACAC
1 AGTGCATCATCGGAT-AAACTGAAGCAAATATACTGGCACACAC
** * *
118142441 AGTGCATCATCGGATAAACCAAAGAAAATATACTGGTACACAC
1 AGTGCATCATCGGATAAACTGAAGCAAATATACTGGCACACAC
* * *
118142484 AGTGCATCATCGGATGAAACCGAAGCTACTATACTGGCACACAC
1 AGTGCATCATCGGAT-AAACTGAAGCAAATATACTGGCACACAC
* * * *
118142528 AGTGCATCATCGAATAAA-TCAAAGAAAATATACTGGTACACAC
1 AGTGCATCATCGGATAAACT-GAAGCAAATATACTGGCACACAC
* * * *
118142571 AGTGCATCATCGGATGAAACCGAAGCTACTATATTGGCACACAC
1 AGTGCATCATCGGAT-AAACTGAAGCAAATATACTGGCACACAC
* * ** *
118142615 AATGCATCGTCGGATAAACCAAAGAAAATATACTGGCACACAC
1 AGTGCATCATCGGATAAACTGAAGCAAATATACTGGCACACAC
* ** * * *
118142658 AGTGCATCATCGGCTATGCTGAAGCAAATATACTTGCATACAT
1 AGTGCATCATCGGATAAACTGAAGCAAATATACTGGCACACAC
* * * **
118142701 AATGCATCATTGGATATACTGAAGCAAATATACTGGCACATGC
1 AGTGCATCATCGGATAAACTGAAGCAAATATACTGGCACACAC
118142744 AGTGCATCATCGGATA
1 AGTGCATCATCGGATA
118142760 TACCAAAGTA
Statistics
Matches: 325, Mismatches: 76, Indels: 10
0.79 0.18 0.02
Matches are distributed among these distances:
43 220 0.68
44 105 0.32
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.22
Consensus pattern (43 bp):
AGTGCATCATCGGATAAACTGAAGCAAATATACTGGCACACAC
Found at i:118149560 original size:21 final size:20
Alignment explanation
Indices: 118149536--118149586 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
118149526 CAAGAGATTA
118149536 TTTAGAATT-TAATTTAATTT
1 TTTA-AATTATAATTTAATTT
*
118149556 CTTTAAATTATTATTTAATTT
1 -TTTAAATTATAATTTAATTT
118149577 TTTATAATTA
1 TTTA-AATTA
118149587 AATAATTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTAAATTATAATTTAATTT
Found at i:118149597 original size:22 final size:21
Alignment explanation
Indices: 118149549--118149598 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
118149539 AGAATTTAAT
* *
118149549 TTAATTTCTTTAAATTATTAT
1 TTAATTTCTTTAAATTAATAA
118149570 TTAATTT-TTTATAATTAAATAA
1 TTAATTTCTTTA-AATT-AATAA
118149592 TTAATTT
1 TTAATTT
118149599 GAATTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.16
21 11 0.44
22 10 0.40
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTAATTTCTTTAAATTAATAA
Found at i:118150559 original size:88 final size:88
Alignment explanation
Indices: 118150447--118150622 Score: 352
Period size: 88 Copynumber: 2.0 Consensus size: 88
118150437 CCTTGAAAAC
118150447 CTGAAAACAAAGAACCCTCAAAACATAAACACAAAATTCTCTAAATGTGTTATGAGTTCTAATCT
1 CTGAAAACAAAGAACCCTCAAAACATAAACACAAAATTCTCTAAATGTGTTATGAGTTCTAATCT
118150512 CTAATGGATTTTTTTCTAATGTT
66 CTAATGGATTTTTTTCTAATGTT
118150535 CTGAAAACAAAGAACCCTCAAAACATAAACACAAAATTCTCTAAATGTGTTATGAGTTCTAATCT
1 CTGAAAACAAAGAACCCTCAAAACATAAACACAAAATTCTCTAAATGTGTTATGAGTTCTAATCT
118150600 CTAATGGATTTTTTTCTAATGTT
66 CTAATGGATTTTTTTCTAATGTT
118150623 GTAAAAGAGC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (88 bp):
CTGAAAACAAAGAACCCTCAAAACATAAACACAAAATTCTCTAAATGTGTTATGAGTTCTAATCT
CTAATGGATTTTTTTCTAATGTT
Found at i:118154515 original size:40 final size:40
Alignment explanation
Indices: 118154450--118154546 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 40
118154440 CCATCTCCGT
* *
118154450 CCAACCCAACACACC-AG-GTGGGGATAAAATAAACCCAC
1 CCAACCCTACACACCAAGTATGGGGATAAAATAAACCCAC
* * * * *
118154488 CCAGCTCTACACACCAAGTATGGGGATAGAATCAACCCAT
1 CCAACCCTACACACCAAGTATGGGGATAAAATAAACCCAC
*
118154528 CCAACCCTACACACTAAGT
1 CCAACCCTACACACCAAGT
118154547 GGTACCGTAT
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
38 12 0.26
39 2 0.04
40 33 0.70
ACGTcount: A:0.38, C:0.34, G:0.14, T:0.13
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAAAATAAACCCAC
Found at i:118156704 original size:33 final size:33
Alignment explanation
Indices: 118156604--118156706 Score: 125
Period size: 33 Copynumber: 3.1 Consensus size: 33
118156594 GAACATTGAA
* * * *
118156604 AGTCCACTAGGACAGTAAGCACATAATAGAGAT
1 AGTCCGCTAAGACAGTAAACACATAATAGAAAT
* * * *
118156637 AATCTGCTGAGACAGTAAACACAAAATAGAAAT
1 AGTCCGCTAAGACAGTAAACACATAATAGAAAT
*
118156670 AGTCCGCTAAGACAGTAAACACATAATAAAAAT
1 AGTCCGCTAAGACAGTAAACACATAATAGAAAT
118156703 AGTC
1 AGTC
118156707 TACTGTTGTA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (33 bp):
AGTCCGCTAAGACAGTAAACACATAATAGAAAT
Found at i:118158220 original size:27 final size:28
Alignment explanation
Indices: 118158190--118158289 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
118158180 ATAGTGAGTC
118158190 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
118158217 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
118158245 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
118158276 CGCACACTTAGTGC
1 CGCACACTTAGTGC
118158290 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:118166066 original size:27 final size:28
Alignment explanation
Indices: 118166036--118166135 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
118166026 ATAGTGAGTC
118166036 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
118166063 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
118166091 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
118166122 CGCACACTTAGTGC
1 CGCACACTTAGTGC
118166136 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:118168786 original size:17 final size:17
Alignment explanation
Indices: 118168753--118168787 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
118168743 TCTATAATAA
*
118168753 ACTCCATACAATTACAT
1 ACTCCATACAATCACAT
*
118168770 ACTCCATACCATCACAT
1 ACTCCATACAATCACAT
118168787 A
1 A
118168788 TATCTCGTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (17 bp):
ACTCCATACAATCACAT
Found at i:118179136 original size:244 final size:244
Alignment explanation
Indices: 118178693--118179178 Score: 837
Period size: 244 Copynumber: 2.0 Consensus size: 244
118178683 TTCTCGAGGT
**
118178693 AGACCCCCGAGACATCCCAGAAGTGCAAGTGGCAGTCGAACTGTTGCTAAGGATGCTACTGTAAA
1 AGACCCCCGAGACATCCCAGAAGTGCAAGTGGCAGTCGAACTGTTGCTAAGGATGCTACTACAAA
* *
118178758 ACCAGAGGCTCGAGCCCCGGAAAGAACTTATGCAATACGCGCTCGAGGGGAAGCCACTACTCCCG
66 ACCAGAGGCTCGAGCCCCGGAAAGAACTTATGCAATAAGCGCTCGAGAGGAAGCCACTACTCCCG
* *
118178823 ATGTCATCAGGGTACATTTTATATCTGTAATACTCGTGCCATTGCCTTAATTTATCTAGGGTCAA
131 ATGTCATCAGGGTACATTTTATATCTGTAATACTCGTGCCATTGCCTTAATTGATCCAGGGTCAA
* **
118178888 TCCATTCATACATTTGTATGGACTTGGTGTCTAGTATGGATATGTCTGC
196 TCCATTCATAAATTTGTATAAACTTGGTGTCTAGTATGGATATGTCTGC
118178937 AGACCCCCGAGACATCCCAGAAGTGCAAGTGGCAGTCGAACTGTTGCTAAGGATGCTACTACAAA
1 AGACCCCCGAGACATCCCAGAAGTGCAAGTGGCAGTCGAACTGTTGCTAAGGATGCTACTACAAA
*
118179002 ACCAGAGGCTCGAGCCCCGGCAAGAACTTATGCAATAAGCGCTCGAGAGGAAGCCACTACTCCCG
66 ACCAGAGGCTCGAGCCCCGGAAAGAACTTATGCAATAAGCGCTCGAGAGGAAGCCACTACTCCCG
* * * *
118179067 ATGTCATCAGGGTACATTTTATATTTGTAATACTTGTGTCATTGCCTTAATTGATCCAGGGTTAA
131 ATGTCATCAGGGTACATTTTATATCTGTAATACTCGTGCCATTGCCTTAATTGATCCAGGGTCAA
*
118179132 TCCATTCGTAAATTTGTATAAACTTGGTGTCTAGTATGGATATGTCT
196 TCCATTCATAAATTTGTATAAACTTGGTGTCTAGTATGGATATGTCT
118179179 ATAGAACCTA
Statistics
Matches: 227, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
244 227 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (244 bp):
AGACCCCCGAGACATCCCAGAAGTGCAAGTGGCAGTCGAACTGTTGCTAAGGATGCTACTACAAA
ACCAGAGGCTCGAGCCCCGGAAAGAACTTATGCAATAAGCGCTCGAGAGGAAGCCACTACTCCCG
ATGTCATCAGGGTACATTTTATATCTGTAATACTCGTGCCATTGCCTTAATTGATCCAGGGTCAA
TCCATTCATAAATTTGTATAAACTTGGTGTCTAGTATGGATATGTCTGC
Found at i:118185163 original size:28 final size:29
Alignment explanation
Indices: 118185123--118185177 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
118185113 CACGAGCAAT
118185123 GACACGAGCGTGT-CTAGGCCATGTGAGG
1 GACACGAGCGTGTGCTAGGCCATGTGAGG
* * *
118185151 GACACGGGCGTGTGCTTGGCCGTGTGA
1 GACACGAGCGTGTGCTAGGCCATGTGA
118185178 AAACCTCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.16, C:0.22, G:0.42, T:0.20
Consensus pattern (29 bp):
GACACGAGCGTGTGCTAGGCCATGTGAGG
Found at i:118185982 original size:43 final size:43
Alignment explanation
Indices: 118185934--118186046 Score: 156
Period size: 43 Copynumber: 2.6 Consensus size: 43
118185924 GGTACTGGTT
* * * *
118185934 TAAAGAACATGATCTTTAGTGGTGCTTTTCCTACA-AACGCTGC
1 TAAAGAACATGATCTTTAGCGGCGCTTTTACTA-ATAACGCCGC
*
118185977 TAAAGAACATGATCTTTAGCGGCGCTTTTACTAATAATGCCGC
1 TAAAGAACATGATCTTTAGCGGCGCTTTTACTAATAACGCCGC
*
118186020 TATAGAACATGATCTTTAGCGGCGCTT
1 TAAAGAACATGATCTTTAGCGGCGCTT
118186047 CTTAAAAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.02
43 62 0.98
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (43 bp):
TAAAGAACATGATCTTTAGCGGCGCTTTTACTAATAACGCCGC
Found at i:118186606 original size:30 final size:27
Alignment explanation
Indices: 118186556--118186611 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
118186546 TTGGGTTAAG
118186556 GAATTGTATAAGATTTGTTGTTATTAT
1 GAATTGTATAAGATTTGTTGTTATTAT
*
118186583 GAATTGTATAAGATTTGTTGTTGTTAT
1 GAATTGTATAAGATTTGTTGTTATTAT
118186610 GA
1 GA
118186612 TCATCATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (27 bp):
GAATTGTATAAGATTTGTTGTTATTAT
Found at i:118195758 original size:13 final size:13
Alignment explanation
Indices: 118195742--118195773 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
118195732 TGTCCTTGCC
118195742 CTTTTTCCTTTTT
1 CTTTTTCCTTTTT
*
118195755 CTTTTTCTTTTTT
1 CTTTTTCCTTTTT
118195768 CTTTTT
1 CTTTTT
118195774 GTACTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
CTTTTTCCTTTTT
Found at i:118197118 original size:22 final size:20
Alignment explanation
Indices: 118197081--118197121 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
118197071 CTCTCTTTAA
118197081 ATTTTTTTTATTTTCCTTTT
1 ATTTTTTTTATTTTCCTTTT
*
118197101 ATTTTTCTTTTTTCTTCCTTT
1 ATTTTT-TTTATT-TTCCTTT
118197122 ATAATGTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (20 bp):
ATTTTTTTTATTTTCCTTTT
Found at i:118197846 original size:9 final size:9
Alignment explanation
Indices: 118197832--118197857 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
118197822 TTCAAATTCA
118197832 GATAATGAT
1 GATAATGAT
118197841 GATAATGAT
1 GATAATGAT
118197850 GATAATGA
1 GATAATGA
118197858 ACTCGGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (9 bp):
GATAATGAT
Found at i:118198338 original size:23 final size:23
Alignment explanation
Indices: 118198308--118198360 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
118198298 TACTATCTTA
118198308 AGACAAAAGCATGTTTTGTCTCG
1 AGACAAAAGCATGTTTTGTCTCG
118198331 AGACAAAAGCATGTTTTGTCTCG
1 AGACAAAAGCATGTTTTGTCTCG
118198354 AGACAAA
1 AGACAAA
118198361 GTTTGCCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (23 bp):
AGACAAAAGCATGTTTTGTCTCG
Found at i:118200284 original size:2 final size:2
Alignment explanation
Indices: 118200277--118200313 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
118200267 AAAATCTTTT
118200277 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
118200314 TTAGTTAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:118201470 original size:2 final size:2
Alignment explanation
Indices: 118201463--118201487 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
118201453 TATATGTTTT
118201463 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
118201488 TGAATTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:118209783 original size:2 final size:2
Alignment explanation
Indices: 118209734--118209764 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
118209724 GGAATTTAAA
*
118209734 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
118209765 ACAGTATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:118209814 original size:2 final size:2
Alignment explanation
Indices: 118209809--118209869 Score: 65
Period size: 2 Copynumber: 32.0 Consensus size: 2
118209799 AACTAATGGC
* * *
118209809 AT AT AT AC AT A- AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
118209848 AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
118209870 TAGAAATGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
1 3 0.06
2 47 0.94
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:118210716 original size:17 final size:17
Alignment explanation
Indices: 118210696--118210757 Score: 51
Period size: 17 Copynumber: 3.7 Consensus size: 17
118210686 TTTTTTTGGT
118210696 TTTTTTTTTGCTGGAAA
1 TTTTTTTTTGCTGGAAA
118210713 TTTTTTTCTGGTGCTGG-AA
1 TTTTTTT-T--TGCTGGAAA
**
118210732 ---TTTTTTGCTGGATT
1 TTTTTTTTTGCTGGAAA
118210746 TTTTTTTTTGCT
1 TTTTTTTTTGCT
118210758 TCCCCTCTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
13 6 0.17
15 1 0.03
16 4 0.11
17 16 0.44
18 1 0.03
19 2 0.06
20 6 0.17
ACGTcount: A:0.10, C:0.08, G:0.19, T:0.63
Consensus pattern (17 bp):
TTTTTTTTTGCTGGAAA
Found at i:118210727 original size:20 final size:19
Alignment explanation
Indices: 118210704--118210742 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
118210694 GTTTTTTTTT
*
118210704 TGCTGGAAATTTTTTTCTGG
1 TGCTGG-AATTTTTTGCTGG
118210724 TGCTGGAATTTTTTGCTGG
1 TGCTGGAATTTTTTGCTGG
118210743 ATTTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.13, C:0.10, G:0.28, T:0.49
Consensus pattern (19 bp):
TGCTGGAATTTTTTGCTGG
Found at i:118211198 original size:35 final size:35
Alignment explanation
Indices: 118211159--118211229 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
118211149 GGGGTGTGTG
* *
118211159 ATGGTGTTGGTGGCAGACAGCATGGGAGAATGGGA
1 ATGGTGCTAGTGGCAGACAGCATGGGAGAATGGGA
*
118211194 ATGGTGCTAGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTAGTGGCAGACAGCATGGGAGAATGGGA
118211229 A
1 A
118211230 GAGGCAAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.45, T:0.18
Consensus pattern (35 bp):
ATGGTGCTAGTGGCAGACAGCATGGGAGAATGGGA
Found at i:118211604 original size:44 final size:44
Alignment explanation
Indices: 118211541--118211639 Score: 101
Period size: 44 Copynumber: 2.2 Consensus size: 44
118211531 TGCATCTTCT
* * *
118211541 GATATATGCTTTGTGGCTTCAATCCACTTTAATGTAACTTCA-A
1 GATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
* ** * *
118211584 GGATATAAGATTTGTAGCTTCGATCTGCTTTACTGTGACTTCAGA
1 -GATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
*
118211629 AATATAAGATT
1 GATATAAGATT
118211640 AACAGCTTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (44 bp):
GATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
Found at i:118212307 original size:14 final size:14
Alignment explanation
Indices: 118212290--118212318 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
118212280 GATTTTGACG
118212290 AACAGAAATTGAAA
1 AACAGAAATTGAAA
118212304 AACAGAAATTGAAA
1 AACAGAAATTGAAA
118212318 A
1 A
118212319 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:118212369 original size:88 final size:87
Alignment explanation
Indices: 118212216--118212441 Score: 267
Period size: 91 Copynumber: 2.6 Consensus size: 87
118212206 TTGATTTTTG
* * *
118212216 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGACTCAACTCACCTCTCGCAATATGAGTTG
118212281 A-TTTTGACGAACAGAAATTGA
66 ATTTTTGACGAACAGAAATTGA
*
118212302 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-TGAGACTCAACTCACCTCTGGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGT---CTTGAGACTCAACTCACCTCTCGCAATATGAG
* *
118212366 TTGATTTTTTTGATGAACAGAAATTGG
63 TTGA--TTTTTGACGAACAGAAATTGA
** * * * ** *
118212393 AAAGTAGAGACTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGACTCAACTCACCT
118212442 ATGAGTTGAT
Statistics
Matches: 120, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
86 28 0.23
88 33 0.28
89 16 0.13
91 43 0.36
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (87 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGACTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGACGAACAGAAATTGA
Found at i:118212620 original size:147 final size:140
Alignment explanation
Indices: 118212441--118213029 Score: 971
Period size: 147 Copynumber: 4.1 Consensus size: 140
118212431 TCAACTCACC
*
118212441 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGGTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
118212506 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
118212571 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
118212589 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
118212654 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
118212719 CCTCTCGCCA
131 CCTCTCGCAA
*
118212729 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
118212794 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
118212859 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
118212876 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
118212941 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
118213006 CCTCTCGCAA
131 CCTCTCGCAA
*
118213016 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
118213030 TTGTCACTTG
Statistics
Matches: 422, Mismatches: 12, Indels: 22
0.93 0.03 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 210 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:118212653 original size:70 final size:70
Alignment explanation
Indices: 118212540--118213029 Score: 863
Period size: 70 Copynumber: 6.9 Consensus size: 70
118212530 CATAAATTGA
*
118212540 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
118212605 AACAT
66 AACAT
*
118212610 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
118212675 AACAT
66 AACAT
*
118212680 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
118212745 AACATAAATT
66 AAC----A-T
*
118212755 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
118212820 GAAACAT
64 GAAACAT
*
118212827 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
118212892 AACAT
66 AACAT
118212897 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
118212962 AACAT
66 AACAT
*
118212967 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
118213030 TTGTCACTTG
Statistics
Matches: 403, Mismatches: 10, Indels: 14
0.94 0.02 0.03
Matches are distributed among these distances:
70 333 0.83
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:118212778 original size:217 final size:217
Alignment explanation
Indices: 118212441--118213029 Score: 1084
Period size: 217 Copynumber: 2.7 Consensus size: 217
118212431 TCAACTCACC
*
118212441 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGGTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
118212506 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
118212571 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
118212636 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
118212659 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
118212724 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
118212789 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
118212854 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
118212876 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
118212941 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
118212999 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
118213030 TTGTCACTTG
Statistics
Matches: 367, Mismatches: 4, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 294 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:118215445 original size:39 final size:39
Alignment explanation
Indices: 118215346--118215445 Score: 105
Period size: 39 Copynumber: 2.6 Consensus size: 39
118215336 TATGGTATTT
* * * *
118215346 AAAATATATATAT-ATATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATATAATAGCATTAA
* * * *
118215384 AGAATATATACATAAGAAATATATA-ACTAATGGCATTAA
1 AAAATATATACATAATATATATATATA-TAATAGCATTAA
118215423 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
118215446 AAATACCTAA
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
38 12 0.24
39 37 0.76
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (39 bp):
AAAATATATACATAATATATATATATATAATAGCATTAA
Found at i:118216006 original size:16 final size:16
Alignment explanation
Indices: 118215967--118216006 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
118215957 TTTCTTCTTT
118215967 TTTTTTTTGGGGTTAG
1 TTTTTTTTGGGGTTAG
*
118215983 GTTTTTTTGGGG-TAG
1 TTTTTTTTGGGGTTAG
118215998 TTTTCTTTT
1 TTTT-TTTT
118216007 CTTTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.05, C:0.03, G:0.28, T:0.65
Consensus pattern (16 bp):
TTTTTTTTGGGGTTAG
Found at i:118216047 original size:1 final size:1
Alignment explanation
Indices: 118215998--118216031 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
118215988 TTTGGGGTAG
* *
118215998 TTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
118216032 GGGTTAGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:118216782 original size:88 final size:83
Alignment explanation
Indices: 118216675--118217252 Score: 299
Period size: 88 Copynumber: 7.0 Consensus size: 83
118216665 AACAGACATT
** * *
118216675 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
118216740 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
118216763 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
118216827 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
118216846 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
118216907 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
118216929 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
118216994 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
118217017 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
118217082 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
118217100 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
118217160 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
118217177 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
118217238 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
118217253 CAGAAATTGA
Statistics
Matches: 384, Mismatches: 69, Indels: 84
0.72 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 115 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:118216879 original size:30 final size:30
Alignment explanation
Indices: 118216843--118216904 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
118216833 TTTTGAAAAA
118216843 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
118216873 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
118216903 CA
1 CA
118216905 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:118217023 original size:14 final size:14
Alignment explanation
Indices: 118217000--118217034 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
118216990 TGAGTTGATT
118217000 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
118217013 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
118217027 TTTGAAAA
1 TTTGAAAA
118217035 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:118217342 original size:72 final size:73
Alignment explanation
Indices: 118217052--118217579 Score: 441
Period size: 72 Copynumber: 6.8 Consensus size: 73
118217042 ACATGTAACC
* * * *
118217052 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
118217117 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
118217130 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
118217195 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
118217208 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
118217273 ACGTGTCT
66 GCGTGTCT
* ** * *
118217281 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
118217345 GCGTGTCC
66 GCGTGTCT
*
118217353 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGCAGAAATTGAAAAATG
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAAACAGAAATTG----A--
** ** *
118217418 GAAATTGAAAATACCTCGACGTGTGAT
56 -AAA-T--ACCT-CAGC---GTGT-CT
* * *
118217445 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
118217510 CAGCGTGTC-
64 CAGCGTGTCT
* *
118217519 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
118217580 ACGGAAATTG
Statistics
Matches: 368, Mismatches: 54, Indels: 59
0.77 0.11 0.12
Matches are distributed among these distances:
72 66 0.18
73 30 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 58 0.16
78 5 0.01
79 51 0.14
80 2 0.01
81 1 0.00
82 1 0.00
83 2 0.01
84 2 0.01
85 1 0.00
86 1 0.00
87 2 0.01
88 2 0.01
90 18 0.05
91 4 0.01
92 1 0.00
93 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:118217541 original size:74 final size:75
Alignment explanation
Indices: 118217418--118217579 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
118217408 TTGAAAAATG
*
118217418 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
118217483 TTTTGACAACA
65 TTTTGACAACA
* * *
118217494 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
118217557 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
118217569 AAAATTGAAAA
1 GAAATTGAAAA
118217580 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Done.