Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 381 of 438
Found at i:118742856 original size:72 final size:72
Alignment explanation
Indices: 118742731--118742864 Score: 180
Period size: 72 Copynumber: 1.9 Consensus size: 72
118742721 GAAATAACTT
* * * ** *
118742731 TGGCCCTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGGTTTGTATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGGATTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
118742796 ATTTGTA
66 ATTTGTA
* *
118742803 TGGCACTATGTGTGCGGATTTGAATGTCAATACGTGTG-TGGATTACTAAGGCACTATGTGTG
1 TGGCACTATGTGTGCGGATTTGAATGGCAATACGTGTGCAGG-TTACTAAGGCACTATGTGTG
118742865 TGGGTTAACA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
71 2 0.04
72 51 0.96
ACGTcount: A:0.20, C:0.13, G:0.31, T:0.35
Consensus pattern (72 bp):
TGGCACTATGTGTGCGGATTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
ATTTGTA
Found at i:118742878 original size:72 final size:72
Alignment explanation
Indices: 118742731--118742895 Score: 170
Period size: 72 Copynumber: 2.3 Consensus size: 72
118742721 GAAATAACTT
* * * ** *
118742731 TGGCCCTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGGTTTGTATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGGATTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
***
118742796 ATTTGTA
66 ATTAACA
* * **
118742803 TGGCACTATGTGTGCGGATTTGAATGTCAATACGTGTG-TGGATTACTAAGGCACTATGTGTGTG
1 TGGCACTATGTGTGCGGATTTGAATGGCAATACGTGTGCAGG-TTACTAAGGCACTATGTGTGCA
*
118742867 GGTTAACA
65 GATTAACA
* *
118742875 TGGCACAATGGGTGCGGATTT
1 TGGCACTATGTGTGCGGATTT
118742896 CCTTGCTTGA
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
71 2 0.03
72 74 0.97
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (72 bp):
TGGCACTATGTGTGCGGATTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
ATTAACA
Found at i:118743596 original size:18 final size:18
Alignment explanation
Indices: 118743569--118743603 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
118743559 AATGAGGTTA
118743569 TTTTTCTTTTTCTTTTTT
1 TTTTTCTTTTTCTTTTTT
* *
118743587 TTTTTGTTTTTGTTTTT
1 TTTTTCTTTTTCTTTTT
118743604 ATGAGCTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.89
Consensus pattern (18 bp):
TTTTTCTTTTTCTTTTTT
Found at i:118749719 original size:14 final size:14
Alignment explanation
Indices: 118749700--118749730 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
118749690 TATATACAAA
118749700 TATATATGTGTGTT
1 TATATATGTGTGTT
118749714 TATATATGTGTGTT
1 TATATATGTGTGTT
118749728 TAT
1 TAT
118749731 TTGAAGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (14 bp):
TATATATGTGTGTT
Found at i:118750185 original size:24 final size:24
Alignment explanation
Indices: 118750158--118750316 Score: 155
Period size: 24 Copynumber: 6.6 Consensus size: 24
118750148 GAAATAACTT
*
118750158 TGGCACTATGTGTGCGGACTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
118750182 TGGCACTATGTGTGCAGG-TTTGTA
1 TGGCACTATGTGTGC-GGATTTGAA
* *
118750206 TGGCACTATGTGTGCAGATTTGTA
1 TGGCACTATGTGTGCGGATTTGAA
118750230 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * * *
118750254 TGTCAATACGTGTGTGGATTACT-AA
1 TGGCACTATGTGTGCGGATT--TGAA
* *
118750279 -GGCACTATGTGTGCGG-GTTAACA
1 TGGCACTATGTGTGCGGATTTGA-A
*
118750302 TGGCACTATGGGTGC
1 TGGCACTATGTGTGC
118750317 AAATTTCCTT
Statistics
Matches: 113, Mismatches: 15, Indels: 14
0.80 0.11 0.10
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 3 0.03
24 103 0.91
25 4 0.04
26 1 0.01
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:118750283 original size:72 final size:72
Alignment explanation
Indices: 118750158--118750292 Score: 182
Period size: 72 Copynumber: 1.9 Consensus size: 72
118750148 GAAATAACTT
* * ** *
118750158 TGGCACTATGTGTGCGGACTTGAATGGCACTATGTGTGCAGGTTTGTATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGGACTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
118750223 ATTTGTA
66 ATTTGTA
* * *
118750230 TGGCACTATGTGTGCGGATTTGAATGTCAATACGTGTG-TGGATTACTAAGGCACTATGTGTGC
1 TGGCACTATGTGTGCGGACTTGAATGGCAATACGTGTGCAGG-TTACTAAGGCACTATGTGTGC
118750293 GGGTTAACAT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
71 2 0.04
72 52 0.96
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (72 bp):
TGGCACTATGTGTGCGGACTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
ATTTGTA
Found at i:118750305 original size:72 final size:72
Alignment explanation
Indices: 118750158--118750316 Score: 176
Period size: 72 Copynumber: 2.2 Consensus size: 72
118750148 GAAATAACTT
* * ** *
118750158 TGGCACTATGTGTGCGGACTTGAATGGCACTATGTGTGCAGGTTTGTATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGGACTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
***
118750223 ATTTGTA
66 ATTAACA
* * * *
118750230 TGGCACTATGTGTGCGGATTTGAATGTCAATACGTGTG-TGGATTACTAAGGCACTATGTGTGCG
1 TGGCACTATGTGTGCGGACTTGAATGGCAATACGTGTGCAGG-TTACTAAGGCACTATGTGTGCA
*
118750294 GGTTAACA
65 GATTAACA
*
118750302 TGGCACTATGGGTGC
1 TGGCACTATGTGTGC
118750317 AAATTTCCTT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
71 2 0.03
72 70 0.97
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.33
Consensus pattern (72 bp):
TGGCACTATGTGTGCGGACTTGAATGGCAATACGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
ATTAACA
Found at i:118754704 original size:13 final size:13
Alignment explanation
Indices: 118754686--118754716 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
118754676 TTTTTTGACC
118754686 GAAAGAAACAAAA
1 GAAAGAAACAAAA
*
118754699 GAAAGAAAGAAAA
1 GAAAGAAACAAAA
118754712 GAAAG
1 GAAAG
118754717 CTTTAGGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (13 bp):
GAAAGAAACAAAA
Found at i:118755587 original size:43 final size:43
Alignment explanation
Indices: 118755524--118755695 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
118755514 ATAGGATTTC
* *
118755524 CGATATGTG-TTCTCGTGTAAGACCATGTCTAGGACGTTGGCAT
1 CGATATGTGATT-TCGAGTAAGACCATGTCTAGGACATTGGCAT
** * *
118755567 CGATATACGATTTCGAGTAAGACCATGTCTGGGATATTGGCAT
1 CGATATGTGATTTCGAGTAAGACCATGTCTAGGACATTGGCAT
* * *
118755610 CG-TAATTGTGA-TTCGTGTAAGACCCTGTCTAGGACAGTGGCAT
1 CGAT-A-TGTGATTTCGAGTAAGACCATGTCTAGGACATTGGCAT
* * * *
118755653 CGACATGTGATTAC-ATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATGTGATTTCGA-GTAAGACCATGTCTAGGACATTGGCAT
118755696 TGTACGATAT
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 6 0.06
43 92 0.89
44 5 0.05
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
CGATATGTGATTTCGAGTAAGACCATGTCTAGGACATTGGCAT
Found at i:118755683 original size:86 final size:86
Alignment explanation
Indices: 118755536--118755695 Score: 225
Period size: 86 Copynumber: 1.9 Consensus size: 86
118755526 ATATGTGTTC
* * *
118755536 TCGTGTAAGACCATGTCTAGGACGTTGGCATCGATATACGATTTCGAGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTAGGACGTTGGCATCGACATACGATTACGAGTAAGACCACGTCTGGGA
*
118755601 TATTGGCATCGTAATTGTGAT
66 CATTGGCATCGTAATTGTGAT
* **
118755622 TCGTGTAAGACCCTGTCTAGGACAG-TGGCATCGACATGTGATTAC-ATGTAAGACCACGTCTGG
1 TCGTGTAAGACCATGTCTAGGAC-GTTGGCATCGACATACGATTACGA-GTAAGACCACGTCTGG
118755685 GACATTGGCAT
64 GACATTGGCAT
118755696 TGTACGATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 1 0.02
86 63 0.97
87 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (86 bp):
TCGTGTAAGACCATGTCTAGGACGTTGGCATCGACATACGATTACGAGTAAGACCACGTCTGGGA
CATTGGCATCGTAATTGTGAT
Found at i:118765938 original size:12 final size:13
Alignment explanation
Indices: 118765902--118765939 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
118765892 AAATATTTGA
118765902 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
118765915 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
118765929 CTTG-TCTTAAT
1 CTTGTTCTTAAT
118765940 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:118770603 original size:29 final size:30
Alignment explanation
Indices: 118770560--118770618 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
118770550 ATTTAATATG
*
118770560 AACTTTGGCAAAATTACA-TTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
118770589 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
118770619 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:118778483 original size:13 final size:13
Alignment explanation
Indices: 118778465--118778489 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118778455 GAATCAGTAT
118778465 GTGTGAAAATTTC
1 GTGTGAAAATTTC
118778478 GTGTGAAAATTT
1 GTGTGAAAATTT
118778490 AATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:118779689 original size:42 final size:43
Alignment explanation
Indices: 118779624--118779739 Score: 159
Period size: 43 Copynumber: 2.7 Consensus size: 43
118779614 CATCGACTTA
118779624 TGATTTACATGTAAGACCATGTCTGGGACATCAG-CATCG-TATT
1 TGATTTACATGTAAGACCATGTCTGGGACAT--GTCATCGATATT
* *
118779667 TGATTT-CGTGTAAGACCCTGTCTGGGACAGTGTCATCGATATT
1 TGATTTACATGTAAGACCATGTCTGGGACA-TGTCATCGATATT
118779710 TG-TTTACATGTAAGACCATGTCTGGGACAT
1 TGATTTACATGTAAGACCATGTCTGGGACAT
118779740 TGGCATTGTA
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
41 1 0.02
42 30 0.46
43 34 0.52
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (43 bp):
TGATTTACATGTAAGACCATGTCTGGGACATGTCATCGATATT
Found at i:118782761 original size:13 final size:14
Alignment explanation
Indices: 118782745--118782780 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
118782735 CGAAACAGGG
118782745 GAAAGAAAG-AAGA
1 GAAAGAAAGAAAGA
118782758 GAAAGAAAGAAAGA
1 GAAAGAAAGAAAGA
*
118782772 AAAAGAAAG
1 GAAAGAAAG
118782781 GAGAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
GAAAGAAAGAAAGA
Found at i:118782785 original size:13 final size:13
Alignment explanation
Indices: 118782746--118782787 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
118782736 GAAACAGGGG
*
118782746 AAAGAAAGAAGAG
1 AAAGAAAGAAGAA
118782759 AAAGAAAGAAAGAA
1 AAAGAAAG-AAGAA
*
118782773 AAAGAAAGGAGAA
1 AAAGAAAGAAGAA
118782786 AA
1 AA
118782788 TTTAGAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAGAA
Found at i:118785100 original size:40 final size:40
Alignment explanation
Indices: 118784973--118785102 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
118784963 ATGCTGGAAA
* *
118784973 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
118785013 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
118785053 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
118785093 TTATATCCGG
1 TTATATCCGG
118785103 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:118793216 original size:20 final size:20
Alignment explanation
Indices: 118793193--118793230 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118793183 CACATCCAAA
*
118793193 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
118793213 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
118793231 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:118795940 original size:40 final size:41
Alignment explanation
Indices: 118795895--118796004 Score: 133
Period size: 39 Copynumber: 2.8 Consensus size: 41
118795885 CTGGAAATTA
* *
118795895 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGT--CATAC
*
118795936 -ATCCGGGCTAAGACCCGAA-GC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATAC
118795974 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC
118796005 ACGTGGTTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
37 1 0.02
38 5 0.08
39 28 0.45
40 28 0.45
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATAC
Found at i:118796018 original size:40 final size:40
Alignment explanation
Indices: 118795892--118796020 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
118795882 ATGCTGGAAA
* *
118795892 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
118795932 CTACATCCGGGCTAAGACCCGAA-GCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
118795971 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
118796011 TTATATCCGG
1 TTATATCCGG
118796021 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 3 0.04
39 30 0.41
40 41 0.55
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:118802671 original size:30 final size:29
Alignment explanation
Indices: 118802577--118802678 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
118802567 TATAGTGAAT
* * *
118802577 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
118802606 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
118802634 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
118802664 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
118802679 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:118807121 original size:49 final size:48
Alignment explanation
Indices: 118807056--118807228 Score: 161
Period size: 49 Copynumber: 3.6 Consensus size: 48
118807046 TGTTGTGTGT
* * *
118807056 CAGTGTAAGACTTGTCTGGGACATGGCATCAACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGC
* * * * * * *
118807105 CAGTGTAAGACCTGTCTAGGATACGACATCGACCACGATATATAAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAAGC
* ** **
118807154 CAGTGTAAGACCTGTTTGGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGC
118807201 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
118807229 GTCGGCATCT
Statistics
Matches: 98, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 15 0.15
48 15 0.15
49 68 0.69
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGC
Found at i:118815229 original size:45 final size:45
Alignment explanation
Indices: 118815165--118815335 Score: 222
Period size: 45 Copynumber: 3.7 Consensus size: 45
118815155 AACCCTCCCC
*
118815165 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
**
118815210 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCATAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GCAT--TCGCATCCA
* *
118815258 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
118815303 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
118815336 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 9, Indels: 17
0.81 0.07 0.13
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 35 0.32
46 30 0.28
47 26 0.24
48 6 0.06
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:118815328 original size:93 final size:92
Alignment explanation
Indices: 118815170--118815339 Score: 322
Period size: 93 Copynumber: 1.8 Consensus size: 92
118815160 TCCCCTAAGT
118815170 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
118815235 GAGTTCGGATGCATAGTTACATCTCAC
66 GAGTTCGGATGCATAGTTACATCTCAC
*
118815262 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
118815327 CGAGTTCGGATGC
65 CGAGTTCGGATGC
118815340 TCAACCATCC
Statistics
Matches: 76, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
92 27 0.36
93 49 0.64
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCATAGTTACATCTCAC
Found at i:118815791 original size:30 final size:30
Alignment explanation
Indices: 118815757--118815816 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
118815747 ATTTAATATG
118815757 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
118815787 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
118815817 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:118822167 original size:22 final size:21
Alignment explanation
Indices: 118822137--118822191 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
118822127 CTACCAAAGT
* *
118822137 AGTTTCAGAATATTCTAATCAT
1 AGTTTCAGAA-ATTCTAAACAG
*
118822159 ATTTTCAGACAATTCTAAACAG
1 AGTTTCAGA-AATTCTAAACAG
118822181 AGTTTCAGAAA
1 AGTTTCAGAAA
118822192 AACTTACAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.89
23 1 0.04
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (21 bp):
AGTTTCAGAAATTCTAAACAG
Found at i:118822288 original size:13 final size:13
Alignment explanation
Indices: 118822270--118822295 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
118822260 ACAAATCATT
118822270 TCTTTAAAACCCA
1 TCTTTAAAACCCA
118822283 TCTTTAAAACCCA
1 TCTTTAAAACCCA
118822296 AATCTACAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (13 bp):
TCTTTAAAACCCA
Found at i:118845564 original size:57 final size:57
Alignment explanation
Indices: 118845422--118845566 Score: 152
Period size: 57 Copynumber: 2.5 Consensus size: 57
118845412 AAATAATATA
* *
118845422 GAAAGGATTTAGCCTGGACGAGTAATCCTGAGCTACACTCTCTTGAGAAAATGTTAT
1 GAAAGGATTTAGCCTGGACGAGTAATCCTGAGCTACACTCTCTAGAGAAAACGTTAT
* * ** **
118845479 GAAATGGATTTAGCCTAGACGAGCAATCCAT-AG-TAGGCTCATC-AGAGCTAACGTTATT
1 GAAA-GGATTTAGCCTGGACGAGTAATCC-TGAGCTACACTC-TCTAGAGAAAACGTTA-T
*
118845537 GAAAGGATTTAGCCTGGACTAGTAATCCTG
1 GAAAGGATTTAGCCTGGACGAGTAATCCTG
118845567 TATAAGCTCT
Statistics
Matches: 72, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
56 1 0.01
57 39 0.54
58 31 0.43
59 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (57 bp):
GAAAGGATTTAGCCTGGACGAGTAATCCTGAGCTACACTCTCTAGAGAAAACGTTAT
Found at i:118850255 original size:22 final size:23
Alignment explanation
Indices: 118850183--118850301 Score: 127
Period size: 22 Copynumber: 5.1 Consensus size: 23
118850173 TCACCGCAGA
*
118850183 TCGTATGAGCTTACTGATATATTAGC
1 TCGTATGAGCTTACTG-T-T-TCAGC
*
118850209 TCGTAAGAGCTTACTGTTTTCAGC
1 TCGTATGAGCTTACTG-TTTCAGC
118850233 TCGTATGAGCTTACTG-TTCAGC
1 TCGTATGAGCTTACTGTTTCAGC
*
118850255 TCATATGAGCTTACTG-TTCAGC
1 TCGTATGAGCTTACTGTTTCAGC
* *
118850277 TCGTCA-GAGCTTACAGTTTTAGC
1 TCGT-ATGAGCTTACTGTTTCAGC
118850300 TC
1 TC
118850302 AATAGAGTTT
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
22 39 0.47
23 8 0.10
24 19 0.23
25 1 0.01
26 16 0.19
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (23 bp):
TCGTATGAGCTTACTGTTTCAGC
Found at i:118854942 original size:25 final size:27
Alignment explanation
Indices: 118854904--118854953 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
118854894 GGAGGGATAA
*
118854904 GGGGAGAGATTTTAG-GGATTTGAGAG
1 GGGGAGAGATTTTAGCCGATTTGAGAG
*
118854930 GGGGATAGA-TTTAGCCGATTTGAG
1 GGGGAGAGATTTTAGCCGATTTGAG
118854954 GGGTTAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.26, C:0.04, G:0.42, T:0.28
Consensus pattern (27 bp):
GGGGAGAGATTTTAGCCGATTTGAGAG
Found at i:118856301 original size:20 final size:20
Alignment explanation
Indices: 118856276--118856342 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
118856266 ATTTTGATAT
118856276 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
118856296 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
118856316 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
118856336 ACATGAT
1 ACATGAT
118856343 GTATTCAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:118856303 original size:11 final size:11
Alignment explanation
Indices: 118856287--118856342 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
118856277 CATGATATGT
118856287 ATGATATGCAC
1 ATGATATGCAC
*
118856298 ATGATATGTAC
1 ATGATATGCAC
118856309 --GATATGCAC
1 ATGATATGCAC
*
118856318 ATGATATG--T
1 ATGATATGCAC
118856327 ATGATATGCAC
1 ATGATATGCAC
118856338 ATGAT
1 ATGAT
118856343 GTATTCAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:118856431 original size:26 final size:26
Alignment explanation
Indices: 118856391--118856504 Score: 156
Period size: 26 Copynumber: 4.4 Consensus size: 26
118856381 GAGGAAGTGC
*
118856391 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
118856417 AAAAGGGCTTATGCCCTAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
118856443 AAAATGGCTTATGCCCCAGTTTCCCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * *
118856469 AAAAGGGTTTATGTCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
118856495 AAAAGGGCTT
1 AAAAGGGCTT
118856505 TTTCCTCAGT
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:118856515 original size:52 final size:52
Alignment explanation
Indices: 118856391--118856515 Score: 180
Period size: 52 Copynumber: 2.4 Consensus size: 52
118856381 GAGGAAGTGC
118856391 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTATCG
1 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTATCG
* * * *
118856443 AAAATGGCTTATGCCCCAGTTTCCCGAAAAGGGTTTATGTCCC-AGTTTATCG
1 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTTATG-CCCTAGTTTATCG
* *
118856495 AAAAGGGCTTTTTCCTCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
118856516 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
52 61 0.95
53 3 0.05
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (52 bp):
AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTATCG
Found at i:118863209 original size:20 final size:20
Alignment explanation
Indices: 118863141--118863207 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
118863131 ATTTTGATAT
*
118863141 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATGC
*
118863161 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
*
118863181 ACATGATGTGTATGATATGC
1 ACATGATATGTATGATATGC
118863201 ACATGAT
1 ACATGAT
118863208 GTTTTATAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:118863285 original size:26 final size:26
Alignment explanation
Indices: 118863256--118863354 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
118863246 GAGGAAGTGC
118863256 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
** * *
118863282 AAAAGGTATTATGCCCCAATTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
118863308 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
118863334 GAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
118863355 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:118872936 original size:14 final size:14
Alignment explanation
Indices: 118872913--118872947 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
118872903 CTTATTTTAC
* *
118872913 AAAAATTAAACACA
1 AAAAACTAAAAACA
118872927 AAAAACTAAAAACA
1 AAAAACTAAAAACA
118872941 AAAAACT
1 AAAAACT
118872948 TAATAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.74, C:0.14, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAAACTAAAAACA
Found at i:118884802 original size:25 final size:26
Alignment explanation
Indices: 118884740--118884854 Score: 155
Period size: 25 Copynumber: 4.5 Consensus size: 26
118884730 TATTACCCCT
* *
118884740 TGTAGGGTAGAATTATTGAAATACCCC
1 TGTAGGATAGAATTATCGAAATA-CCC
* *
118884767 TGTAGGGTAGAATTA-CGAAATACCT
1 TGTAGGATAGAATTATCGAAATACCC
*
118884792 TGTAGGATAGAATTACCGAAATACCC
1 TGTAGGATAGAATTATCGAAATACCC
118884818 TGTAGG-TAGAATTATCGAAATA-CC
1 TGTAGGATAGAATTATCGAAATACCC
118884842 TGTAGGATAGAAT
1 TGTAGGATAGAAT
118884855 ACCCCTTGTA
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
24 8 0.10
25 37 0.46
26 21 0.26
27 15 0.19
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (26 bp):
TGTAGGATAGAATTATCGAAATACCC
Found at i:118884847 original size:50 final size:52
Alignment explanation
Indices: 118884737--118884854 Score: 179
Period size: 50 Copynumber: 2.3 Consensus size: 52
118884727 AAGTATTACC
* **
118884737 CCTTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACGAAATA
1 CCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAGAATTACGAAATA
118884789 CCTTGTAGGATAGAATTACCGAAATA-CCCTGTA-GGTAGAATTATCGAAATA
1 CCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAGAATTA-CGAAATA
118884840 CC-TGTAGGATAGAAT
1 CCTTGTAGGATAGAAT
118884855 ACCCCTTGTA
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
50 23 0.37
51 16 0.26
52 23 0.37
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (52 bp):
CCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAGAATTACGAAATA
Found at i:118884887 original size:21 final size:19
Alignment explanation
Indices: 118884840--118884897 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
118884830 TATCGAAATA
* *
118884840 CCTGTAGGATAGAATACCC
1 CCTGTAGGGTAAAATACCC
*
118884859 CTTGTAGGGTAAAATACCTAC
1 CCTGTAGGGTAAAATACC--C
*
118884880 CCTGTAGGGTAAATTACC
1 CCTGTAGGGTAAAATACC
118884898 GAGATACCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 15 0.47
21 17 0.53
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (19 bp):
CCTGTAGGGTAAAATACCC
Found at i:118885612 original size:27 final size:26
Alignment explanation
Indices: 118885568--118885619 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
118885558 CTCGCTGCAA
*
118885568 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
118885595 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
118885620 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:118891541 original size:27 final size:27
Alignment explanation
Indices: 118891507--118891678 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
118891497 TGGATAAGTT
*
118891507 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
118891534 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
118891561 GTAGAA-TATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
118891587 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
118891614 GTAGAAATACCGAAATACCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
118891641 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
118891668 GTAAAATTACC
1 GTAGAATTACC
118891679 ATTTTTCCCC
Statistics
Matches: 127, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.18
27 104 0.82
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:118891581 original size:53 final size:54
Alignment explanation
Indices: 118891507--118891674 Score: 259
Period size: 53 Copynumber: 3.1 Consensus size: 54
118891497 TGGATAAGTT
* *
118891507 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
**
118891561 GTAG-AATATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * *
118891614 GTAGAAATACCGAAATACCTCTGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
118891668 GTA-AAAT
1 GTAGAAAT
118891675 TACCATTTTT
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
53 53 0.51
54 51 0.49
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.25
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:118893576 original size:40 final size:40
Alignment explanation
Indices: 118893479--118893626 Score: 190
Period size: 40 Copynumber: 3.6 Consensus size: 40
118893469 CAAATTCTCT
* *
118893479 CACACTAAGTGCCAATACATAGCCGAAGCTAT-TTTAATATCA
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATCTTGAAT-T-G
118893521 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATTG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATTG
* * * * *
118893561 CACACTAAATGCCATACATAGCCAAAGTTATCTCGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATTG
*
118893601 TACACTAAGTGCCATACATAGCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
118893627 TTGTAGTCAA
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 58 0.61
41 19 0.20
42 18 0.19
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATTG
Found at i:118894964 original size:20 final size:20
Alignment explanation
Indices: 118894939--118894976 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118894929 GGACTAAACC
*
118894939 GATCACATATAAAAATTTTT
1 GATCACATAGAAAAATTTTT
*
118894959 GATCACTTAGAAAAATTT
1 GATCACATAGAAAAATTT
118894977 CATGAAATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.37
Consensus pattern (20 bp):
GATCACATAGAAAAATTTTT
Found at i:118896975 original size:27 final size:27
Alignment explanation
Indices: 118896921--118897019 Score: 94
Period size: 27 Copynumber: 3.6 Consensus size: 27
118896911 TTAGAATACT
* *
118896921 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
*
118896949 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
* *
118896976 -TCGATTTGTAAAATTACTAAAATA-CC
1 TTAG-TTTGTAAAATTACTGAAATACCC
* *
118897002 TTCGACTTGTAAAATTAC
1 TTAG-TTTGTAAAATTAC
118897020 CAAAGTACCC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.06
27 51 0.82
28 7 0.11
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.34
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:118897065 original size:27 final size:27
Alignment explanation
Indices: 118897025--118897207 Score: 235
Period size: 27 Copynumber: 6.8 Consensus size: 27
118897015 ATTACCAAAG
118897025 TACCC-CGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
118897051 TACCCCCGGTTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
118897078 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
118897105 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
118897132 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
118897159 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
118897186 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
118897208 TAAAATACCC
Statistics
Matches: 138, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.04
27 131 0.95
28 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:118897216 original size:27 final size:27
Alignment explanation
Indices: 118897132--118897326 Score: 126
Period size: 27 Copynumber: 7.1 Consensus size: 27
118897122 ATTACCGTTT
* * ***
118897132 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
118897159 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
118897186 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
118897213 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
118897240 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
*
118897267 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
118897296 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
118897323 TACC
1 TACC
118897327 TTTGGTTTGT
Statistics
Matches: 136, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 110 0.81
28 8 0.06
29 17 0.12
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:118897217 original size:54 final size:54
Alignment explanation
Indices: 118896971--118897219 Score: 164
Period size: 54 Copynumber: 4.6 Consensus size: 54
118896961 AATACTGAAA
** * ** * ****
118896971 TACCCTCGATTTGTAAAATTACTAAAATACCTTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACTAAAATACCCTCGACTTACAGAATTACCGTTT
* ***** * ** *
118897025 TACCC-CGATTTACAGAATTACCGTTTTACCCCCGGTTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTCGACTTACAGAATTACCGTTT
* **
118897078 TACCC-CTGATTTACATAATTATCGT--TTTACCCTCGACTTACAGAATTACCGTTT
1 TACCCTC-GATTTACAAAATTA-C-TAAAATACCCTCGACTTACAGAATTACCGTTT
* * *** * * *
118897132 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTCGACTTACAGAATTACCGTTT
118897186 TACCCTCGATTTACAAAATTACTAAAATACCCTC
1 TACCCTCGATTTACAAAATTACTAAAATACCCTC
118897220 AATTTGTAAA
Statistics
Matches: 153, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
52 1 0.01
53 36 0.24
54 114 0.75
55 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTCGACTTACAGAATTACCGTTT
Found at i:118897217 original size:81 final size:81
Alignment explanation
Indices: 118897075--118897254 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 81
118897065 ATAATTACCG
* * **** *
118897075 TTTTACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCG
1 TTTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAAAATTACCAAAATACCCTCA
*
118897140 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * *
118897156 TTTTACCCTTGATTTACAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTC
1 TTTTACCCCTGATTTACAGAATTATC-GTTTTACCCTCGACTTACAAAATTACCAAAATACCCTC
* *
118897220 AATTTGTAAAATTACCA
65 AATTTATAAAATTACTA
***
118897237 AAATACCCCTGATTTACA
1 TTTTACCCCTGATTTACA
118897255 AAGTTACAAA
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 1 0.01
81 80 0.99
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (81 bp):
TTTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAAAATTACCAAAATACCCTCA
ATTTATAAAATTACTA
Found at i:118897233 original size:54 final size:54
Alignment explanation
Indices: 118897060--118897272 Score: 146
Period size: 54 Copynumber: 3.9 Consensus size: 54
118897050 TTACCCCCGG
* * ** *
118897060 TTTACATAATTACCGTTTTACCC-CTGATTTACATAATTATCGT--TTTACCCTCGA
1 TTTACAAAATTACCGTTTTACCCTC-GATTTACAAAATTA-C-TAAAATACCCTCAA
* * * * *** **
118897114 CTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGA
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAA
* *
118897168 TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAA
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAA
** **** * *
118897222 TTTGTAAAATTACCAAAATACCC-CTGATTTACAAAGTTACAAAAATACCCT
1 TTTACAAAATTACCGTTTTACCCTC-GATTTACAAAATTACTAAAATACCCT
118897273 TGACTTTCTA
Statistics
Matches: 131, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 2 0.02
54 127 0.97
55 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (54 bp):
TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAA
Found at i:118897331 original size:27 final size:27
Alignment explanation
Indices: 118897283--118897334 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
118897273 TGACTTTCTA
118897283 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
118897310 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
118897335 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:118898739 original size:20 final size:20
Alignment explanation
Indices: 118898669--118898731 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
118898659 ATTTTGATAA
*
118898669 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
*
118898689 ACATTACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
118898709 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
118898729 ACA
1 ACA
118898732 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:118898865 original size:24 final size:24
Alignment explanation
Indices: 118898785--118898996 Score: 333
Period size: 24 Copynumber: 9.0 Consensus size: 24
118898775 GGAGGAAGTG
118898785 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
118898809 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
118898832 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118898855 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118898879 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118898903 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* **
118898927 -TAAAGGGCTTATGCCCCAGAGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118898950 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
118898973 CAAAAAGGGCTTTTGCCCCAGTTA
1 C-AAAAGGGCTTATGCCCCAGTTA
118898997 CTAAAAGAGG
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
23 66 0.38
24 110 0.62
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:118898932 original size:71 final size:71
Alignment explanation
Indices: 118898787--118899001 Score: 328
Period size: 71 Copynumber: 3.0 Consensus size: 71
118898777 AGGAAGTGCA
* *
118898787 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
118898850 GTTATCA
66 GTTAT-T
118898857 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
118898922 GTTATT
66 GTTATT
** *
118898928 AAAGGGCTTATGCCCCAGAGATCAAAAGGGCTTATGCCCCAGTTA-CAAAAAGGGCTTTTGCCCC
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC-AAAAGGGCTTATGCCCC
*
118898992 AGTTACT
65 AGTTATT
118898999 AAA
1 AAA
118899002 AGAGGCTAGG
Statistics
Matches: 135, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
70 23 0.17
71 90 0.67
72 22 0.16
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATT
Found at i:118898952 original size:95 final size:93
Alignment explanation
Indices: 118898785--118899008 Score: 367
Period size: 95 Copynumber: 2.4 Consensus size: 93
118898775 GGAGGAAGTG
*
118898785 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
**
118898850 GTTATCAAAAGGGCTTATGCCCCAGTTA
66 GAGATCAAAAGGGCTTATGCCCCAGTTA
118898878 TCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCC
1 -CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCC
118898943 CAGAGATCAAAAGGGCTTATGCCCCAGTTA
64 CAGAGATCAAAAGGGCTTATGCCCCAGTTA
*
118898973 CAAAAAGGGCTTTTGCCCCAGTTACTAAAAGAGGCT
1 C-AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
118899009 AGGCCTCTAG
Statistics
Matches: 122, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
94 25 0.20
95 92 0.75
96 5 0.04
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (93 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
GAGATCAAAAGGGCTTATGCCCCAGTTA
Found at i:118902159 original size:27 final size:27
Alignment explanation
Indices: 118902083--118902172 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
118902073 TTTAGTTTAC
* *
118902083 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
118902110 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
118902137 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
118902164 TAAAATTAC
1 TAAAATTAC
118902173 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:118902182 original size:54 final size:53
Alignment explanation
Indices: 118902083--118902188 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
118902073 TTTAGTTTAC
* *
118902083 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCC-CGATTTG
* * *
118902137 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCGATTT
118902189 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 14 0.31
54 31 0.69
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCGATTTG
Found at i:118902199 original size:26 final size:26
Alignment explanation
Indices: 118902167--118902225 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
118902157 CGACTTGTAA
118902167 AATTACCAAAGTACCCCGATTTACAG
1 AATTACCAAAGTACCCCGATTTACAG
**** *
118902193 AATTACCGTTTTACCCCGATTTACAT
1 AATTACCAAAGTACCCCGATTTACAG
118902219 AATTACC
1 AATTACC
118902226 GTTTTACCCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (26 bp):
AATTACCAAAGTACCCCGATTTACAG
Found at i:118902248 original size:27 final size:27
Alignment explanation
Indices: 118902178--118902386 Score: 280
Period size: 27 Copynumber: 7.8 Consensus size: 27
118902168 ATTACCAAAG
118902178 TACCC-CGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
118902204 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
118902230 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
118902257 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
118902284 TACCCTCGATTTAAAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
118902311 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
118902338 TACCCTGGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
118902365 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
118902387 TAAAATACCC
Statistics
Matches: 164, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 31 0.19
27 132 0.80
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:118902395 original size:27 final size:27
Alignment explanation
Indices: 118902311--118902505 Score: 126
Period size: 27 Copynumber: 7.1 Consensus size: 27
118902301 ATTACCGTTT
* ***
118902311 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
118902338 TACCCTGGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
118902365 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *** *
118902392 TACCCTCAATTTGTTAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
118902419 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
*
118902446 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
118902475 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
118902502 TACC
1 TACC
118902506 TTTGGTTTGT
Statistics
Matches: 133, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
26 1 0.01
27 107 0.80
28 8 0.06
29 17 0.13
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:118902413 original size:54 final size:54
Alignment explanation
Indices: 118902165--118902403 Score: 196
Period size: 54 Copynumber: 4.5 Consensus size: 54
118902155 TTCGACTTGT
* * *
118902165 AAAATTACCAAAGTACCC-CGATTTACAGAATTACCGTTTTACCC-CGATTTAC
1 AAAATTACTAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTAC
* ***** * * * *
118902217 ATAATTACCGTTTTACCC-CTGATTTACATAATTATCGTTTTACCCTCGACTTAC
1 AAAATTACTAAAATACCCTC-AATTTACAGAATTACCGTTTTACCCTCGATTTAC
* ***** * * *
118902271 AGAATTACCGTTTTACCCTCGATTTAAAGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACTAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTAC
*** ** *
118902325 AAAATTACTATTTTACCCTGGATTTACAGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTAC
118902379 AAAATTACTAAAATACCCTCAATTT
1 AAAATTACTAAAATACCCTCAATTT
118902404 GTTAAATTAC
Statistics
Matches: 158, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
52 14 0.09
53 23 0.15
54 120 0.76
55 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTAC
Found at i:118902423 original size:81 final size:81
Alignment explanation
Indices: 118902124--118902433 Score: 270
Period size: 81 Copynumber: 3.9 Consensus size: 81
118902114 AATACTGAAA
** * * * *
118902124 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCC-CGATT
1 TACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAATTACCCTCGATT
118902188 TACAGAATTACCGTTT
66 TACAGAATTACCGTTT
* *** ** * * *** *
118902204 TACCC-CGATTTACATAATTACCGTTTTACCC-CTGATTTACATAATTATCGTTTTACCCTCGAC
1 TACCCTCGATTTACAAAATTACCGAAATACCCTC-GATTTGTAAAATTACCAAATTACCCTCGAT
118902267 TTACAGAATTACCGTTT
65 TTACAGAATTACCGTTT
*** * * ** *
118902284 TACCCTCGATTTA-AAGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTGGAT
1 TACCCTCGATTTACAA-AATTACCGAAATACCCTCGATTTGTAAAATTACCAAATTACCCTCGAT
*
118902348 TTACAGAATTACTGTTT
65 TTACAGAATTACCGTTT
** * * *
118902365 TACCCTCGATTTACAAAATTACTAAAATACCCTCAATTTGTTAAATTACCAAAATACCC-CTGAT
1 TACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAATTACCCTC-GAT
118902429 TTACA
65 TTACA
118902434 AAGTTACAAA
Statistics
Matches: 183, Mismatches: 40, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
78 1 0.01
79 34 0.19
80 31 0.17
81 114 0.62
82 3 0.02
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAATTACCCTCGATT
TACAGAATTACCGTTT
Found at i:118902510 original size:27 final size:27
Alignment explanation
Indices: 118902462--118902513 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
118902452 TGACTTTCTA
118902462 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
118902489 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
118902514 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:118903864 original size:9 final size:9
Alignment explanation
Indices: 118903852--118903908 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
118903842 TTTGATAAAC
118903852 ATGATATGT
1 ATGATATGT
*
118903861 ATGATATGCAC
1 ATGATATG--T
*
118903872 ATGACATGT
1 ATGATATGT
*
118903881 ATGATATGCAC
1 ATGATATG--T
118903892 ATGATATGT
1 ATGATATGT
118903901 ATGATATG
1 ATGATATG
118903909 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:118903875 original size:20 final size:20
Alignment explanation
Indices: 118903850--118903912 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
118903840 ATTTTGATAA
118903850 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
118903870 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
118903890 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
118903910 ACA
1 ACA
118903913 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:118904046 original size:24 final size:24
Alignment explanation
Indices: 118903966--118904203 Score: 333
Period size: 24 Copynumber: 10.0 Consensus size: 24
118903956 GGAGGAAGTG
118903966 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
118903990 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
118904013 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118904036 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118904060 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118904084 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* **
118904108 -TAAAGGGCTTATGCCCCAGAGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
118904131 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
118904154 CAAAAAGGGTTTTTGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
* *
118904179 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
118904204 ATGATAAAGC
Statistics
Matches: 194, Mismatches: 14, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
23 66 0.34
24 118 0.61
25 10 0.05
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:118904113 original size:71 final size:71
Alignment explanation
Indices: 118903968--118904182 Score: 328
Period size: 71 Copynumber: 3.0 Consensus size: 71
118903958 AGGAAGTGCA
* *
118903968 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
118904031 GTTATCA
66 GTTAT-T
118904038 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
118904103 GTTATT
66 GTTATT
** * *
118904109 AAAGGGCTTATGCCCCAGAGATCAAAAGGGCTTATGCCCCAGTTA-CAAAAAGGGTTTTTGCCCC
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC-AAAAGGGCTTATGCCCC
118904173 AGTTATT
65 AGTTATT
118904180 AAA
1 AAA
118904183 AGAGGCTAGG
Statistics
Matches: 135, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
70 23 0.17
71 90 0.67
72 22 0.16
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATT
Found at i:118904133 original size:95 final size:93
Alignment explanation
Indices: 118903966--118904203 Score: 361
Period size: 95 Copynumber: 2.5 Consensus size: 93
118903956 GGAGGAAGTG
*
118903966 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
**
118904031 GTTATCAAAAGGGCTTATGCCCCAGTTA
66 GAGATCAAAAGGGCTTATGCCCCAGTTA
118904059 TCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCC
1 -CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCC
118904124 CAGAGATCAAAAGGGCTTATGCCCCAGTTA
64 CAGAGATCAAAAGGGCTTATGCCCCAGTTA
* * *
118904154 CAAAAAGGGTTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
118904204 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 6, Indels: 8
0.90 0.04 0.05
Matches are distributed among these distances:
94 25 0.19
95 96 0.72
96 12 0.09
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (93 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
GAGATCAAAAGGGCTTATGCCCCAGTTA
Found at i:118913454 original size:31 final size:31
Alignment explanation
Indices: 118913397--118913489 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
118913387 CCTTTTCATA
*
118913397 TTTCATATTTCATAATACT--GCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
118913426 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
118913457 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
118913488 TT
1 TT
118913490 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 18 0.30
31 43 0.70
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:118913732 original size:24 final size:24
Alignment explanation
Indices: 118913681--118913800 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
118913671 GCTTTATCAT
*
118913681 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
118913706 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
118913730 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
118913754 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
118913778 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
118913801 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 76 0.86
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:118913876 original size:20 final size:20
Alignment explanation
Indices: 118913851--118913910 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
118913841 TATGATTACC
118913851 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
118913871 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
*
118913891 TCATGTGCATCTCATACATA
1 TCATGTGCATATCATACATA
118913911 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:118919131 original size:14 final size:14
Alignment explanation
Indices: 118919112--118919140 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
118919102 ACTGTAAGAA
118919112 GAGAGTTCAGTAAG
1 GAGAGTTCAGTAAG
118919126 GAGAGTTCAGTAAG
1 GAGAGTTCAGTAAG
118919140 G
1 G
118919141 GAAGAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.38, T:0.21
Consensus pattern (14 bp):
GAGAGTTCAGTAAG
Found at i:118919538 original size:17 final size:16
Alignment explanation
Indices: 118919516--118919560 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
118919506 GCCTCAGAAA
118919516 CAAATGAAAAGAAACAC
1 CAAATGAAAAGAAAC-C
118919533 CAAATGAAAA-AAACC
1 CAAATGAAAAGAAACC
*
118919548 CAAAAG-AAAGAAA
1 CAAATGAAAAGAAA
118919561 GTAGAAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 3 0.12
15 9 0.35
16 4 0.15
17 10 0.38
ACGTcount: A:0.69, C:0.16, G:0.11, T:0.04
Consensus pattern (16 bp):
CAAATGAAAAGAAACC
Found at i:118922200 original size:42 final size:42
Alignment explanation
Indices: 118922154--118922238 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
118922144 AAGGGGCGAT
* * *
118922154 AGACACTGGAGCTGTACCTAGCAAGAGCTCTATCCCCAACTC
1 AGACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTC
118922196 AGACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTC
1 AGACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTC
118922238 A
1 A
118922239 ACTTCACGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.32, C:0.33, G:0.18, T:0.18
Consensus pattern (42 bp):
AGACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTC
Found at i:118925348 original size:40 final size:40
Alignment explanation
Indices: 118925204--118925371 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
118925194 TGGAATATAA
* ** *
118925204 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* *
118925244 CCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * * *
118925284 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * *
118925324 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGG-TCTTAGC
118925364 CCGGATAT
1 CCGGATAT
118925372 CATTCAATTT
Statistics
Matches: 100, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
39 2 0.02
40 95 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:118930663 original size:40 final size:40
Alignment explanation
Indices: 118930608--118930829 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
118930598 TATTCGAATG
*
118930608 ATATCCGGACTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
118930648 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
118930688 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
118930728 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
118930768 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
118930808 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
118930830 TACTTGGGTT
Statistics
Matches: 172, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 155 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:118937725 original size:47 final size:47
Alignment explanation
Indices: 118937648--118937822 Score: 224
Period size: 47 Copynumber: 3.7 Consensus size: 47
118937638 AATTGTTAAG
* * * * ** * *
118937648 TACCTATACCATGGCCAGTAGTCAAGTCAAGGTAACTTATCTCGGAG
1 TACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAGAA
* *
118937695 TACCTACATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAGAA
118937742 TACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAGAA
1 TACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAGAA
*** *
118937789 TACCTATATCATGGCCTACATCCAAATCAAGGTA
1 TACCTATATCATGGCCCGTAGCCAAATCAAGGTA
118937823 TTATTCATAC
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (47 bp):
TACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAGAA
Found at i:118938496 original size:11 final size:11
Alignment explanation
Indices: 118938469--118938497 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
118938459 TCATCAAGCT
118938469 TTCAAAATTCA
1 TTCAAAATTCA
118938480 -TCAAAATTCA
1 TTCAAAATTCA
118938490 TTCAAAAT
1 TTCAAAAT
118938498 CTCAAGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (11 bp):
TTCAAAATTCA
Found at i:118952656 original size:30 final size:30
Alignment explanation
Indices: 118952605--118952663 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
118952595 CCCCAAGTAG
* * *
118952605 CCCATATTTTTCATTTATTCACAATTTAAT
1 CCCACATTTTTCAATTATTCACAAATTAAT
118952635 CCCACATTTTTCACATT-TTCACAAATTAA
1 CCCACATTTTTCA-ATTATTCACAAATTAA
118952664 GCTTTAATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (30 bp):
CCCACATTTTTCAATTATTCACAAATTAAT
Found at i:118954795 original size:32 final size:32
Alignment explanation
Indices: 118954759--118954822 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
118954749 TCATATGGGT
* *
118954759 TTGATTCTGATATGGGCTAGGCCCAACTGATA
1 TTGATTCTGAGAAGGGCTAGGCCCAACTGATA
*
118954791 TTGATTCTGAGAAGGGCTAGGCCCAATTGATA
1 TTGATTCTGAGAAGGGCTAGGCCCAACTGATA
118954823 CTGTGATGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (32 bp):
TTGATTCTGAGAAGGGCTAGGCCCAACTGATA
Found at i:118964018 original size:46 final size:46
Alignment explanation
Indices: 118963968--118964096 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
118963958 TGGTTGAGCA
*
118963968 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
118964014 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
118964060 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
118964097 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 2 0.03
46 77 0.97
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:118974339 original size:39 final size:39
Alignment explanation
Indices: 118974262--118974684 Score: 454
Period size: 39 Copynumber: 10.7 Consensus size: 39
118974252 TAGTATCAGT
* * * *
118974262 ACGAAGCCTGCGGACCTTAAGTCCGAATATAGTACCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGC
* * *
118974301 ACGAAGCCTACGGATCTTAAGTTCGGATACAATTCCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGC
* * * * * *
118974340 ATGAAGCCTGTGGGTCTTTAAGTGCAGATACAATTCCAGC
1 ACGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGC
* * *
118974380 ACGAAGCCTATG-GGTCTTTAAGCCCGGATACAATTCCAGC
1 ACGAAGCC--TGCGGACCTTAAGTCCGGATACAATTCCAGC
*
118974420 ACGAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGC
* * * * *
118974459 ACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGC
1 ACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGC
* * * * * *
118974499 A-TATAGCTTGCGGGTCTTTAAGCCCGGATATAATTCCAGC
1 ACGA-AGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGC
* * * *
118974539 ACAAAGCTTGCGGACCTTAAGTCTGGATACAATTCCAAC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGC
*
118974578 ACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGC
* *
118974617 ACGAAGCTTGCGGACCTTAAGTCCGAATACAATTCCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGC
*
118974656 ACGAAGCCTGCAGACCTTAAGTCCGGATA
1 ACGAAGCCTGCGGACCTTAAGTCCGGATA
118974685 TACATCAAAT
Statistics
Matches: 334, Mismatches: 43, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.01
39 197 0.59
40 132 0.40
41 1 0.00
42 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (39 bp):
ACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGC
Found at i:118974439 original size:119 final size:118
Alignment explanation
Indices: 118974296--118974684 Score: 473
Period size: 119 Copynumber: 3.3 Consensus size: 118
118974286 GAATATAGTA
* * * *
118974296 CCAGCACGAAGCCTACGGATCTTAAGTTCGGATACAATTCCAGCATGAAGCCTGTGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAA
* *
118974361 GTGCAGATACAATTCCAGCACGAAGCCTATGGGTCTTTAAGCCCGGATACAATT
66 GTCCGGATACAATTCCAGCACGAAGCCT-TGGGTCTTTAAGCCCGGATACAATT
* * *
118974415 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAA
* * * *
118974480 GCCCGGATATAATTCCAGCA-TATAG-CTTGCGGGTCTTTAAGCCCGGATATAATT
66 GTCCGGATACAATTCCAGCACGA-AGCCTT--GGGTCTTTAAGCCCGGATACAATT
* * * * * *
118974534 CCAGCACAAAGCTTGCGGACCTTAAGTCTGGATACAATTCCAACACGAAG-CT-TGCGGACCTTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTG-GGTCTTTA
* * * *
118974597 AGTCCGGATACAATTCCAGCACGAAG-CTTGCGGACCTTAAGTCCGAATACAATT
65 AGTCCGGATACAATTCCAGCACGAAGCCTTG-GGTCTTTAAGCCCGGATACAATT
*
118974651 CCAGCACGAAGCCTGCAGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
118974685 TACATCAAAT
Statistics
Matches: 230, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
116 1 0.00
117 50 0.22
118 35 0.15
119 144 0.63
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (118 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAA
GTCCGGATACAATTCCAGCACGAAGCCTTGGGTCTTTAAGCCCGGATACAATT
Found at i:118985549 original size:40 final size:39
Alignment explanation
Indices: 118985504--118985630 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
118985494 CGGAACATAA
118985504 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
118985544 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
118985584 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
118985624 CCGGATA
1 CCGGATA
118985631 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:118993565 original size:40 final size:39
Alignment explanation
Indices: 118993520--118993649 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
118993510 CGGAACATAA
118993520 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
118993560 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
118993600 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
118993640 CCGGATATAA
1 CCGGATATAA
118993650 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:118993664 original size:40 final size:40
Alignment explanation
Indices: 118993536--118993687 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
118993526 ATAACCATGT
* * *
118993536 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
118993576 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
118993616 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
118993656 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
118993688 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:118993670 original size:80 final size:80
Alignment explanation
Indices: 118993536--118993685 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
118993526 ATAACCATGT
*
118993536 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
118993600 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
118993616 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
118993679 CCCGGAT
64 CCCGGAT
118993686 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:118997635 original size:33 final size:33
Alignment explanation
Indices: 118997592--118997656 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
118997582 CCCACAATGC
*
118997592 TACTGTATAGGGCTAAGGCCCAGACTATACTGT
1 TACTGAATAGGGCTAAGGCCCAGACTATACTGT
** *
118997625 TACTGAATAGGGCTTTGGCCCAGACTGTACTG
1 TACTGAATAGGGCTAAGGCCCAGACTATACTG
118997657 ATAGTGTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (33 bp):
TACTGAATAGGGCTAAGGCCCAGACTATACTGT
Found at i:119009006 original size:29 final size:29
Alignment explanation
Indices: 119008964--119009036 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
119008954 GTGACAAGAT
119008964 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
119008993 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
119009022 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
119009037 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:119009055 original size:29 final size:29
Alignment explanation
Indices: 119009023--119009095 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
119009013 TGAAAAGTAT
* * *
119009023 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
119009052 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
119009081 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
119009096 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:119016945 original size:29 final size:29
Alignment explanation
Indices: 119016903--119016975 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
119016893 GTGACAAGAT
119016903 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
119016932 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
119016961 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
119016976 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:119016994 original size:29 final size:29
Alignment explanation
Indices: 119016962--119017034 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
119016952 TGAAAAGTAT
* * *
119016962 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
119016991 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
119017020 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
119017035 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:119020726 original size:56 final size:55
Alignment explanation
Indices: 119020659--119020822 Score: 195
Period size: 56 Copynumber: 2.9 Consensus size: 55
119020649 TTACATGTAA
* *
119020659 TCACATATCGATGCCAC-AATCGCAGACAGGGTCTTACTCACACACATATATCAGAG
1 TCACATATCGATGCCACGAAT--AAAACAGGGTCTTACTCACACACATATATCAGAG
* * *
119020715 TCACATATCGATGCCAACGTATAAAACATGGTCTTACTCGCACACATATATCAGAG
1 TCACATATCGATGCC-ACGAATAAAACAGGGTCTTACTCACACACATATATCAGAG
* * * * *
119020771 TCACATATCGCTGCCAACGTATAAAACATGGTCTTACTCGCATACATATATC
1 TCACATATCGATGCC-ACGAATAAAACAGGGTCTTACTCACACACATATATC
119020823 GATGCCATGG
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
56 95 0.96
57 2 0.02
58 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (55 bp):
TCACATATCGATGCCACGAATAAAACAGGGTCTTACTCACACACATATATCAGAG
Found at i:119026080 original size:29 final size:29
Alignment explanation
Indices: 119026052--119026153 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
119026042 CCTCCGAGCT
** * * *
119026052 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
119026081 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
119026110 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
119026139 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
119026154 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:119033942 original size:29 final size:29
Alignment explanation
Indices: 119033914--119034015 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
119033904 CCTCCGAGCT
** * * *
119033914 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
119033943 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
119033972 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
119034001 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
119034016 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:119041289 original size:49 final size:47
Alignment explanation
Indices: 119041172--119041488 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
119041162 GATTTTACGC
* * *
119041172 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
119041219 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
119041266 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
119041315 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
119041364 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
119041411 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
119041458 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
119041489 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:119041296 original size:96 final size:93
Alignment explanation
Indices: 119041172--119041488 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
119041162 GATTTTACGC
119041172 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
119041237 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
119041266 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
119041331 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
119041364 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
119041429 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
119041458 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
119041489 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:119043480 original size:42 final size:41
Alignment explanation
Indices: 119043416--119043627 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 41
119043406 CTCGACGATG
* * *
119043416 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
* * * * *
119043458 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGT-TAC
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
*
119043498 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* *
119043538 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* * ** * * *
119043578 ATCCGGACCAGGTTCCGAAGAGCAGTCATGCTGGTGATATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
*
119043620 ATTCGGGC
1 ATCCGGGC
119043628 CTTCGAGCCT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 103 0.70
41 1 0.01
42 43 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
Found at i:119043658 original size:43 final size:43
Alignment explanation
Indices: 119043610--119043787 Score: 311
Period size: 43 Copynumber: 4.1 Consensus size: 43
119043600 CAGTCATGCT
119043610 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
119043653 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
119043696 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
* * * **
119043739 GGTGATATGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
119043782 GGTGAT
1 GGTGAT
119043788 TCGAGCAAGG
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 130 1.00
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.31
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
Found at i:119047645 original size:49 final size:47
Alignment explanation
Indices: 119047528--119047844 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
119047518 GATTTTACGC
* * *
119047528 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
119047575 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
119047622 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
119047671 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
119047720 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
119047767 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
119047814 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
119047845 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:119047652 original size:96 final size:93
Alignment explanation
Indices: 119047528--119047844 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
119047518 GATTTTACGC
119047528 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
119047593 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
119047622 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
119047687 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
119047720 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
119047785 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
119047814 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
119047845 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:119054455 original size:57 final size:58
Alignment explanation
Indices: 119054392--119054502 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
119054382 AATTTCACGT
* *
119054392 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
119054449 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
119054503 GTCACGTTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 22 0.46
58 26 0.54
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:119054458 original size:29 final size:29
Alignment explanation
Indices: 119054395--119054502 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
119054385 TTCACGTACC
* * *
119054395 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
119054423 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
119054452 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
119054481 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
119054503 GTCACGTTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.24
29 51 0.73
30 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:119058967 original size:28 final size:28
Alignment explanation
Indices: 119058923--119059036 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
119058913 TACCTGTATC
* *
119058923 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
119058951 TGGTCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
119058980 TGGCCCATTAGGACCAAATCACATTTATA
1 TGGCCCATTAGG-CCCAATCACATTCATA
**
119059009 TGGCCCGCTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
119059037 ATCATGCTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 28 0.39
29 40 0.56
30 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:119058984 original size:57 final size:57
Alignment explanation
Indices: 119058914--119059029 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
119058904 AATTTTAGTT
* * * * *
119058914 ACCTGTATCTGGCCCATTAAG-CCCAATCATATTCATATGGTCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGACCAAATCACATTCATATGGCCCACTAGGCCC-AATC
* * *
119058971 ACCTGTATATGGCCCATTAGGACCAAATCACATTTATATGGCCCGCTAGGCCCAATC
1 ACCTGTATATGGCCCATTAAGACCAAATCACATTCATATGGCCCACTAGGCCCAATC
119059028 AC
1 AC
119059030 ATTCATAATC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
57 25 0.50
58 25 0.50
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGACCAAATCACATTCATATGGCCCACTAGGCCCAATC
Found at i:119059273 original size:16 final size:16
Alignment explanation
Indices: 119059248--119059290 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
119059238 GTAGCCAAAC
*
119059248 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
*
119059264 TTTCGTCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
119059280 TTTTGGCTTTT
1 TTTCGGCTTTT
119059291 GCCGATACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.05, C:0.19, G:0.21, T:0.56
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:119060556 original size:16 final size:16
Alignment explanation
Indices: 119060532--119060563 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
119060522 AAGTTCAGGA
*
119060532 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
119060548 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
119060564 GCGTTACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:119061322 original size:40 final size:40
Alignment explanation
Indices: 119061262--119061343 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
119061252 TTATCAAATA
*
119061262 TCCCCACACTTAAGCATTTGCTTGTCCTCAAGCAAAATTC
1 TCCCCACACTTAAGCATTTGCTTGTCCTCAAGAAAAATTC
* *
119061302 TCCCCACACTTAAGCTTTTGCTTGTCTTCAAGAAAAATTC
1 TCCCCACACTTAAGCATTTGCTTGTCCTCAAGAAAAATTC
119061342 TC
1 TC
119061344 AACTCACAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (40 bp):
TCCCCACACTTAAGCATTTGCTTGTCCTCAAGAAAAATTC
Found at i:119062591 original size:23 final size:21
Alignment explanation
Indices: 119062559--119062600 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
119062549 TTTATGTAAA
*
119062559 AGAAAGGAAATAATAAAAGAAAT
1 AGAAAAGAAA-AA-AAAAGAAAT
119062582 AGAAAAGAAAAAAAAAGAA
1 AGAAAAGAAAAAAAAAGAA
119062601 CTGTGTGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (21 bp):
AGAAAAGAAAAAAAAAGAAAT
Found at i:119063962 original size:29 final size:29
Alignment explanation
Indices: 119063929--119064031 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
119063919 GTGACGAGAT
119063929 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
119063958 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
119063987 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
119064016 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
119064032 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:119070653 original size:23 final size:21
Alignment explanation
Indices: 119070621--119070662 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
119070611 TTTATGTAAA
*
119070621 AGAAAGGAAATAATAAAAGAAAT
1 AGAAAAGAAA-AA-AAAAGAAAT
119070644 AGAAAAGAAAAAAAAAGAA
1 AGAAAAGAAAAAAAAAGAA
119070663 GTGTGTGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (21 bp):
AGAAAAGAAAAAAAAAGAAAT
Found at i:119072021 original size:29 final size:29
Alignment explanation
Indices: 119071988--119072090 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
119071978 GTGACGAGAT
119071988 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
119072017 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
119072046 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
119072075 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
119072091 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:119078184 original size:75 final size:76
Alignment explanation
Indices: 119078059--119078309 Score: 384
Period size: 75 Copynumber: 3.3 Consensus size: 76
119078049 TAATGGAGAA
*
119078059 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCGGCTAAGTCCCGAAGGCAT
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATGGGCTAAGTCCCGAAGGCAT
119078124 TCGTGCTGGTG
66 TCGTGCTGGTG
*
119078135 TTATATCCGGGCTAAGTCCCGAA-GCATTCGTACTGGTGTTATATGGGCTAAGTCCCGAAGGCAT
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATGGGCTAAGTCCCGAAGGCAT
119078199 TCGTGCTGGTG
66 TCGTGCTGGTG
119078210 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT-GTGTTATATCCGGGCTAAAGTCCCGCAA-
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT--GGGCT-AAGTCCCG-AAG
* *
119078273 GC-TTTGTGCTGGTA
62 GCATTCGTGCTGGTG
119078287 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
119078310 CATGCTTTGT
Statistics
Matches: 163, Mismatches: 5, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
75 82 0.50
76 33 0.20
77 27 0.17
78 11 0.07
79 10 0.06
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (76 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATGGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTG
Found at i:119078233 original size:39 final size:39
Alignment explanation
Indices: 119078059--119078309 Score: 383
Period size: 39 Copynumber: 6.5 Consensus size: 39
119078049 TAATGGAGAA
119078059 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
119078098 TTATAT-C-GGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
119078135 TTATATCCGGGCTAAGTCCCGAA-GCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
119078173 TTATAT--GGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
119078210 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT-GTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
119078248 TTATATCCGGGCTAAAGTCCCGCAA-GC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCG-AAGGCATTCGTGCTGGTG
119078287 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
119078310 CATGCTTTGT
Statistics
Matches: 199, Mismatches: 4, Indels: 17
0.90 0.02 0.08
Matches are distributed among these distances:
36 15 0.08
37 56 0.28
38 45 0.23
39 71 0.36
40 12 0.06
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:119086058 original size:12 final size:12
Alignment explanation
Indices: 119086041--119086065 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119086031 CTTTTGTCTT
119086041 ACCTATCGTAGA
1 ACCTATCGTAGA
119086053 ACCTATCGTAGA
1 ACCTATCGTAGA
119086065 A
1 A
119086066 TCATCGTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (12 bp):
ACCTATCGTAGA
Found at i:119088914 original size:26 final size:26
Alignment explanation
Indices: 119088885--119088937 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
119088875 TCAAACATGC
119088885 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
119088911 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
119088937 A
1 A
119088938 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:119090448 original size:26 final size:26
Alignment explanation
Indices: 119090417--119090524 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
119090407 TGAAATGCCC
*
119090417 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
119090443 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
119090469 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
119090495 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
119090521 ATCA
1 ATCA
119090525 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:119096847 original size:33 final size:34
Alignment explanation
Indices: 119096804--119096895 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 34
119096794 GCATTACACT
119096804 ATTACTGTATAGGGCTAAGGCCTAGATTGTACTG
1 ATTACTGTATAGGGCTAAGGCCTAGATTGTACTG
* * *
119096838 -TTACTGTATAGGGCCAAGGCCCAGATTGTATTG
1 ATTACTGTATAGGGCTAAGGCCTAGATTGTACTG
* * *
119096871 ATTACTG-AAAAGGCTCAGGCCTAGA
1 ATTACTGTATAGGGCTAAGGCCTAGA
119096896 CCGTTACTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
33 43 0.88
34 6 0.12
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (34 bp):
ATTACTGTATAGGGCTAAGGCCTAGATTGTACTG
Found at i:119102546 original size:29 final size:29
Alignment explanation
Indices: 119102512--119102643 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
119102502 TACTCGATTT
* * *
119102512 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
119102541 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
119102570 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * ** *
119102599 TGCACACTTAGTGCCATA-TATTTCCGGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
119102628 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
119102644 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Done.