Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 387 of 438
Found at i:120735070 original size:27 final size:27
Alignment explanation
Indices: 120734992--120735161 Score: 139
Period size: 27 Copynumber: 6.3 Consensus size: 27
120734982 TTAGTTTACC
* * **
120734992 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
120735019 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
120735046 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
120735073 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** **
120735100 AAATTATTGAAATA-CCCTCGGCTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
120735127 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
120735154 GAATTACC
1 AAATTACC
120735162 GTTTTACCCT
Statistics
Matches: 118, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
26 4 0.03
27 109 0.92
28 5 0.04
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:120735169 original size:27 final size:27
Alignment explanation
Indices: 120735142--120735278 Score: 177
Period size: 27 Copynumber: 5.1 Consensus size: 27
120735132 ACCAAAGTAC
* * *
120735142 CCCT-GATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
120735168 CCCTCGATTGACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
**
120735195 CCCTCGATTTACAAAATTATTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
120735222 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
120735249 CCCTTGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
120735276 CCC
1 CCC
120735279 CTAGGGTGTT
Statistics
Matches: 99, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 4 0.04
27 95 0.96
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:120735558 original size:27 final size:26
Alignment explanation
Indices: 120735514--120735566 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
120735504 CTCGCTGCAA
*
120735514 TCTGGTGGCCTCGCCACATATATCTGG
1 TCTGGTGACCTCGCCACA-ATATCTGG
* *
120735541 TCTGGTGACTTCGTCACAATATCTGG
1 TCTGGTGACCTCGCCACAATATCTGG
120735567 CAGCCTCGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.17, C:0.26, G:0.25, T:0.32
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGG
Found at i:120735605 original size:2 final size:2
Alignment explanation
Indices: 120735598--120735637 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
120735588 GCTTCGCAAC
120735598 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120735638 GTTCTGGTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120735841 original size:6 final size:6
Alignment explanation
Indices: 120735813--120735990 Score: 116
Period size: 6 Copynumber: 28.8 Consensus size: 6
120735803 CATTCACATC
* * *
120735813 CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT CTG-TT ACCTCATT
1 CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT --CTGATT
* *
120735863 CTGATT CTGGTT CTGATT CTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * * *
120735912 CTG-TT ACCTAATT CTGATT CTGGTT TTGATT TTGATT CTG-TCAC CTGATT
1 CTGATT --CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT
*
120735962 CTGATT TTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGA-TT CTGAT
120735991 AATGTTTCTT
Statistics
Matches: 135, Mismatches: 20, Indels: 34
0.71 0.11 0.18
Matches are distributed among these distances:
5 10 0.07
6 104 0.77
7 14 0.10
8 7 0.05
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:120735841 original size:25 final size:25
Alignment explanation
Indices: 120735813--120735877 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
120735803 CATTCACATC
* *
120735813 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTCATA
*
120735838 CTGATTCTGATTCTGTTACCTCATT
1 CTGATTCTGATTCTGTTACCTCATA
*
120735863 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
120735878 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTCATA
Found at i:120735867 original size:31 final size:30
Alignment explanation
Indices: 120735832--120735929 Score: 110
Period size: 31 Copynumber: 3.2 Consensus size: 30
120735822 ATTCTGTTAC
120735832 CTGATACTGATTCTGATTCTGTTACCTCATT
1 CTGATACTGATTCTGATTCTGTTACCT-ATT
* * *
120735863 CTGATTCTGGTTCTGATTCTGATT--CTGTT
1 CTGATACTGATTCTGATTCTG-TTACCTATT
120735892 ACCTGATACTGATTCTGATTCTGTTACCTAATT
1 --CTGATACTGATTCTGATTCTGTTACCT-ATT
120735925 CTGAT
1 CTGAT
120735930 TCTGGTTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
29 2 0.04
30 4 0.07
31 43 0.78
32 4 0.07
33 2 0.04
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (30 bp):
CTGATACTGATTCTGATTCTGTTACCTATT
Found at i:120735880 original size:37 final size:37
Alignment explanation
Indices: 120735832--120735914 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
120735822 ATTCTGTTAC
* *
120735832 CTGATACTGATTCTGATTCTGTTACCTCATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTCATACTGATT
* *
120735869 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTCATACTGATT
120735906 CTGATTCTG
1 CTGATTCTG
120735915 TTACCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTCATACTGATT
Found at i:120735905 original size:25 final size:25
Alignment explanation
Indices: 120735875--120735933 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
120735865 GATTCTGGTT
*
120735875 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
120735900 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
120735925 CTGATTCTG
1 CTGATTCTG
120735934 GTTTTGATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:120735910 original size:62 final size:62
Alignment explanation
Indices: 120735813--120735976 Score: 274
Period size: 62 Copynumber: 2.6 Consensus size: 62
120735803 CATTCACATC
*
120735813 CTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTCATTCTGATTCTGGTT
1 CTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
*
120735875 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
1 CTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
* * * *
120735937 TTGATTTTGATTCTGTCACCTGATTCTGATTTTGATTCTG
1 CTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTG
120735977 ATTCTAGTTC
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (62 bp):
CTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
Found at i:120735942 original size:31 final size:30
Alignment explanation
Indices: 120735832--120735942 Score: 109
Period size: 31 Copynumber: 3.6 Consensus size: 30
120735822 ATTCTGTTAC
* *
120735832 CTGATACTGATTCTGATTCTGTTACCTCATT
1 CTGATTCTGGTTCTGATTCTGTTACCT-ATT
*
120735863 CTGATTCTGGTTCTGATTCTGATT--CTGTT
1 CTGATTCTGGTTCTGATTCTG-TTACCTATT
* *
120735892 ACCTGATACTGATTCTGATTCTGTTACCTAATT
1 --CTGATTCTGGTTCTGATTCTGTTACCT-ATT
*
120735925 CTGATTCTGGTTTTGATT
1 CTGATTCTGGTTCTGATT
120735943 TTGATTCTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
29 2 0.03
30 4 0.06
31 53 0.82
32 4 0.06
33 2 0.03
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (30 bp):
CTGATTCTGGTTCTGATTCTGTTACCTATT
Found at i:120735988 original size:37 final size:37
Alignment explanation
Indices: 120735894--120735981 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
120735884 ATTCTGTTAC
* *
120735894 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * * *
120735931 CTGGTTTTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
*
120735968 TTGATTCTGATTCT
1 CTGATTCTGATTCT
120735982 AGTTCTGATA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:120745311 original size:7 final size:7
Alignment explanation
Indices: 120745299--120745336 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
120745289 ACAACCTTTC
120745299 CCATTCT
1 CCATTCT
120745306 CCATTCT
1 CCATTCT
120745313 CCATTCT
1 CCATTCT
120745320 CCATTCT
1 CCATTCT
120745327 CCATTCT
1 CCATTCT
120745334 CCA
1 CCA
120745337 ACTACTCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.16, C:0.45, G:0.00, T:0.39
Consensus pattern (7 bp):
CCATTCT
Found at i:120750804 original size:25 final size:25
Alignment explanation
Indices: 120750770--120750817 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
120750760 GCGGCCAAAA
120750770 GTGAGGTCCACCAATTGAAGATCAT
1 GTGAGGTCCACCAATTGAAGATCAT
120750795 GTGAGGTCCACCAATTGAAGATC
1 GTGAGGTCCACCAATTGAAGATC
120750818 TCCTCGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (25 bp):
GTGAGGTCCACCAATTGAAGATCAT
Found at i:120756546 original size:12 final size:12
Alignment explanation
Indices: 120756529--120756567 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
120756519 TGTATAGATT
*
120756529 TTTTATATATTA
1 TTTTATTTATTA
120756541 TTTTATTTATT-
1 TTTTATTTATTA
120756552 TATTTATTTATTA
1 T-TTTATTTATTA
120756565 TTT
1 TTT
120756568 CCCTTACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTATTTATTA
Found at i:120756741 original size:3 final size:3
Alignment explanation
Indices: 120756733--120756768 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
120756723 TTCACATTTG
120756733 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
120756769 CTACTACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:120764870 original size:34 final size:34
Alignment explanation
Indices: 120764827--120764895 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
120764817 AAGGATAATT
120764827 TCCAGTTGTCTTATATCGACACCTTAGTGGACAA
1 TCCAGTTGTCTTATATCGACACCTTAGTGGACAA
120764861 TCCAGTTGTCTTATATCGACACCTTAGTGGACAA
1 TCCAGTTGTCTTATATCGACACCTTAGTGGACAA
120764895 T
1 T
120764896 ACGAAAGGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (34 bp):
TCCAGTTGTCTTATATCGACACCTTAGTGGACAA
Found at i:120768721 original size:44 final size:44
Alignment explanation
Indices: 120768623--120768753 Score: 136
Period size: 44 Copynumber: 2.9 Consensus size: 44
120768613 ATTTGCAGTG
* * * * * *
120768623 GAGCAAATTAAAGCCACAAATCTTATCTCCCTAAAGTTTCAGTT
1 GAGCAAATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAATA
* *
120768667 GAGGAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAATA
1 GAGCAAATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAATA
*
120768711 GAGCAAATTGAAAAATAGCTACAAATCTTATTTCCCTGAAGTT
1 GAGCAAATTG----A-AGCTACAAATCTTATCTCCCTGAAGTT
120768754 ACAGTGGAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
44 44 0.62
48 1 0.01
49 26 0.37
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (44 bp):
GAGCAAATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAATA
Found at i:120768798 original size:51 final size:50
Alignment explanation
Indices: 120768681--120768926 Score: 188
Period size: 51 Copynumber: 5.0 Consensus size: 50
120768671 AGATTGAAGC
* * * * *
120768681 TACAAATCTTATCTCCCTGAAGTTGCAATAGAGCAAATTGAAA-AAT-AGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAAATT-AAACTATAAGT
* *
120768730 TACAAATCTTATTTCCCTGAAGTTACAGTGGAACAAATTAAAGCTATAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAAATTAAA-CTATAAGT
* * * *
120768781 TACAAATCTTATCTCCCT-AGATTTGTAGT-GAAC----TATA-T-TGAAGC
1 TACAAATCTTATCTCCCTGA-AGTTGCAGTGGAACAAATTAAACTAT-AAGT
* * * * * *
120768825 TACAAATCTTATTTCCCTAAAGTTGCAGTGAAATAGATTAAAACTACAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAAATT-AAACTATAAGT
* * *
120768876 TACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTATAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAAATTAAA-CTATAAGT
120768927 CTAATCTCCC
Statistics
Matches: 154, Mismatches: 28, Indels: 28
0.73 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 28 0.18
45 3 0.02
46 3 0.02
48 3 0.02
49 35 0.23
50 12 0.08
51 69 0.45
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (50 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAAATTAAACTATAAGT
Found at i:120768854 original size:95 final size:95
Alignment explanation
Indices: 120768681--120768959 Score: 283
Period size: 95 Copynumber: 2.9 Consensus size: 95
120768671 AGATTGAAGC
* * * * *
120768681 TACAAATCTTATCTCCCTGAAGTTGCAATAGAGCAAATTGAAAAATAGCTACAAATCTTATTTCC
1 TACAAATCTTATCTCCCTGAAGTTGTAGTGGAACAGATT----AA-AGCTACAAATCTTATTTCC
* * * *
120768746 CTGAAGTTACAGTGGAACAAATTAAAGCTATAAGT
61 CTAAAGTTGCAGTGGAACAAATTAAAACTACAAGT
* * *
120768781 TACAAATCTTATCTCCCT-AGATTTGTAGT-GAACTATATTGAAGCTACAAATCTTATTTCCCTA
1 TACAAATCTTATCTCCCTGA-AGTTGTAGTGGAAC-AGATTAAAGCTACAAATCTTATTTCCCTA
* * *
120768844 AAGTTGCAGTGAAATAGATTAAAACTACAAGT
64 AAGTTGCAGTGGAACAAATTAAAACTACAAGT
* * * * * *
120768876 TACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTATAAGTCTAATCTCCCAAAA
1 TACAAATCTTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAATCTTATTTCCCTAAA
*
120768941 GTTGCAGTGGAGCAAATTA
66 GTTGCAGTGGAACAAATTA
120768960 CAGTGACAAA
Statistics
Matches: 149, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
95 112 0.75
96 5 0.03
99 4 0.03
100 28 0.19
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.30
Consensus pattern (95 bp):
TACAAATCTTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAATCTTATTTCCCTAAA
GTTGCAGTGGAACAAATTAAAACTACAAGT
Found at i:120768872 original size:44 final size:44
Alignment explanation
Indices: 120768629--120768873 Score: 116
Period size: 44 Copynumber: 5.3 Consensus size: 44
120768619 AGTGGAGCAA
* * * **
120768629 ATTAAAGCCACAAATCTTATCTCCCTAAAGTTTCAGTTG-AGGAG
1 ATTAAAACTACAAATCTTATCTCCCTAAAGTTGCAG-TGAAATAG
* * * * *
120768673 ATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAATAGAGCAAATTG
1 ATTAAAACTACAAATCTTATCTCCCTAAAGTTGC---AGTG-AAATAG
* * * * *
120768721 A-AAAATAGCTACAAATCTTATTTCCCTGAAGTTACAGTGGAACAAATTAA
1 ATTAAA-A-CTACAAATCTTATCTCCCTAAAGTTGCAGT-G---AAA-TAG
* ** * * * * *
120768771 AGCTATAAGTTACAAATCTTATCTCCCTAGATTTGTAGTGAACTAT
1 A-TTA-AAACTACAAATCTTATCTCCCTAAAGTTGCAGTGAAATAG
* * *
120768817 ATTGAAGCTACAAATCTTATTTCCCTAAAGTTGCAGTGAAATAG
1 ATTAAAACTACAAATCTTATCTCCCTAAAGTTGCAGTGAAATAG
120768861 ATTAAAACTACAA
1 ATTAAAACTACAA
120768874 GTTACAAATC
Statistics
Matches: 149, Mismatches: 38, Indels: 28
0.69 0.18 0.13
Matches are distributed among these distances:
44 74 0.50
45 1 0.01
46 6 0.04
47 7 0.05
48 3 0.02
49 29 0.19
50 3 0.02
51 23 0.15
52 1 0.01
53 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.31
Consensus pattern (44 bp):
ATTAAAACTACAAATCTTATCTCCCTAAAGTTGCAGTGAAATAG
Found at i:120769088 original size:44 final size:44
Alignment explanation
Indices: 120769028--120769130 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 44
120769018 TATTGTTTCC
* **** *
120769028 CTGAAGTTGCAGTGGAATAGATTGAAGTTGTAAGTCTTAT-CTCT
1 CTGAAGTTGCAATGGAATAGATTGAAGCAACAAATCTTATAC-CT
*
120769072 CTGAAGTTGCAATGGAATGGATTGAAGCAACAAATCTTATACCT
1 CTGAAGTTGCAATGGAATAGATTGAAGCAACAAATCTTATACCT
120769116 CTGAAGTTGCAATGG
1 CTGAAGTTGCAATGG
120769131 GTTAGAATAA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 50 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (44 bp):
CTGAAGTTGCAATGGAATAGATTGAAGCAACAAATCTTATACCT
Found at i:120770874 original size:16 final size:16
Alignment explanation
Indices: 120770855--120770896 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
120770845 TATATATATA
120770855 TATATATTA-TTT-TT
1 TATATATTATTTTATT
120770869 TATATATTATTTTATT
1 TATATATTATTTTATT
*
120770885 TATTTATTATTT
1 TATATATTATTT
120770897 CCTTTACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 9 0.36
15 3 0.12
16 13 0.52
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATATATTATTTTATT
Found at i:120771031 original size:30 final size:30
Alignment explanation
Indices: 120770995--120771056 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
120770985 ATTATTTCAT
120770995 TATTATTTATTTATTTAGTACCTTTTTTTA
1 TATTATTTATTTATTTAGTACCTTTTTTTA
*
120771025 TATTATTTATTTATTTATTACCTTTTTTTA
1 TATTATTTATTTATTTAGTACCTTTTTTTA
120771055 TA
1 TA
120771057 CTTTCAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.68
Consensus pattern (30 bp):
TATTATTTATTTATTTAGTACCTTTTTTTA
Found at i:120771054 original size:17 final size:17
Alignment explanation
Indices: 120771004--120771055 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
120770994 TTATTATTTA
*
120771004 TTTATTTAGTACCTTTT
1 TTTATTTATTACCTTTT
*
120771021 TTTA--TATTA--TTTA
1 TTTATTTATTACCTTTT
120771034 TTTATTTATTACCTTTT
1 TTTATTTATTACCTTTT
120771051 TTTAT
1 TTTAT
120771056 ACTTTCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
13 7 0.25
15 9 0.32
17 12 0.43
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTATTTATTACCTTTT
Found at i:120772391 original size:19 final size:20
Alignment explanation
Indices: 120772369--120772407 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
120772359 AAAGTAATAT
120772369 AAATATAGAAAATAT-TAAA
1 AAATATAGAAAATATGTAAA
**
120772388 AAATATTTAAAATATGTAAA
1 AAATATAGAAAATATGTAAA
120772408 TTGATATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (20 bp):
AAATATAGAAAATATGTAAA
Found at i:120772507 original size:9 final size:9
Alignment explanation
Indices: 120772494--120772567 Score: 78
Period size: 9 Copynumber: 8.1 Consensus size: 9
120772484 ATTTAAAATT
120772494 TTATAAAAA
1 TTATAAAAA
*
120772503 CTATAAAAA
1 TTATAAAAA
120772512 TTATAAAAA
1 TTATAAAAA
*
120772521 -TATTAAAA
1 TTATAAAAA
* *
120772529 GTATTAAAA
1 TTATAAAAA
*
120772538 TTGATATAAAC
1 TT-ATA-AAAA
120772549 TTATAAAAA
1 TTATAAAAA
120772558 TTATAAAAA
1 TTATAAAAA
120772567 T
1 T
120772568 AAAATAAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
8 7 0.13
9 38 0.69
10 5 0.09
11 5 0.09
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:120772520 original size:29 final size:28
Alignment explanation
Indices: 120772494--120772567 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 28
120772484 ATTTAAAATT
120772494 TTATAAAAACTATAAAAATT-ATAAAAA
1 TTATAAAAACTATAAAAATTGATAAAAA
* * * *
120772521 -TATTAAAAGTATTAAAATTGATATAAAC
1 TTATAAAAACTATAAAAATTGATA-AAAA
*
120772549 TTATAAAAATTATAAAAAT
1 TTATAAAAACTATAAAAAT
120772568 AAAATAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 16 0.43
27 3 0.08
28 3 0.08
29 15 0.41
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (28 bp):
TTATAAAAACTATAAAAATTGATAAAAA
Found at i:120773862 original size:14 final size:15
Alignment explanation
Indices: 120773838--120773866 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
120773828 ATATTTATTC
120773838 ATTTAAAAATTTAAA
1 ATTTAAAAATTTAAA
120773853 ATTT-AAAATTTAAA
1 ATTTAAAAATTTAAA
120773867 TATAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTAAAAATTTAAA
Found at i:120774188 original size:90 final size:90
Alignment explanation
Indices: 120773980--120774178 Score: 233
Period size: 90 Copynumber: 2.2 Consensus size: 90
120773970 AAGGGTGCCT
** *
120773980 TCAATTTTTTTCAAAAAAACAATTAAGCCCCTACTTTTTTTTTTTTGCACTCAGTTGAATACTTG
1 TCAATTTTTTTCAAAAAAACAATTAAGCCCCTAC--TCATTTTTTTGCACTCAATTGAATACTTG
* *
120774045 AACTTTCAAAATGCATCAAAAAAGTCC
64 AACTTTAAAAATGCATCAAAAAAGCCC
*** * *
120774072 TCAAACCTTTTCAAAAAAAGCAATTAAGCCCCTAC-CATTTTTTTGCACTCAATT-AGATATTTT
1 TCAATTTTTTTCAAAAAAA-CAATTAAGCCCCTACTCATTTTTTTGCACTCAATTGA-ATACTTG
*
120774135 AACTTTAAAAATGTAT-AAAAAAGACCC
64 AACTTTAAAAATGCATCAAAAAAG-CCC
120774162 TCAATTTTTTTCAAAAA
1 TCAATTTTTTTCAAAAA
120774179 GGAAAATTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
89 8 0.09
90 51 0.57
92 16 0.18
93 15 0.17
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (90 bp):
TCAATTTTTTTCAAAAAAACAATTAAGCCCCTACTCATTTTTTTGCACTCAATTGAATACTTGAA
CTTTAAAAATGCATCAAAAAAGCCC
Found at i:120774244 original size:17 final size:18
Alignment explanation
Indices: 120774215--120774251 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
120774205 AAAATTAGAA
120774215 AAAAAATATAAAAATCGT
1 AAAAAATATAAAAATCGT
*
120774233 AAAAAATA-AAAAATTGT
1 AAAAAATATAAAAATCGT
120774250 AA
1 AA
120774252 CATTTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (18 bp):
AAAAAATATAAAAATCGT
Found at i:120774262 original size:27 final size:26
Alignment explanation
Indices: 120774232--120774316 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 26
120774222 ATAAAAATCG
*
120774232 TAAAAAATAAAAAATTGTAACATTTTA
1 TAAAAAATAAAAAATTATAA-ATTTTA
* * * *
120774259 TAAAATCATAAAATATTATAAAATATA
1 TAAAA-AATAAAAAATTATAAATTTTA
*
120774286 TAGAAATATAAAAAATTATAAATTTTA
1 TA-AAAAATAAAAAATTATAAATTTTA
120774313 TAAA
1 TAAA
120774317 TTCGTAAGAA
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
26 2 0.04
27 30 0.64
28 15 0.32
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (26 bp):
TAAAAAATAAAAAATTATAAATTTTA
Found at i:120774297 original size:55 final size:56
Alignment explanation
Indices: 120774238--120774354 Score: 148
Period size: 55 Copynumber: 2.1 Consensus size: 56
120774228 ATCGTAAAAA
* * *
120774238 ATAAAAAATTGTAACATTTTATAAAATCATAA-AATATTAT-AAAATATATAGAAAT
1 ATAAAAAATTATAA-ATTTTATAAAATCATAAGAAAATTATAAAAATATAAAGAAAT
* * *
120774293 ATAAAAAATTATAAATTTTATAAATTCGTAAGAAAATTATAAAAAATGTAAAGAAAT
1 ATAAAAAATTATAAATTTTATAAAATCATAAGAAAATTAT-AAAAATATAAAGAAAT
120774350 ATAAA
1 ATAAA
120774355 TTTTATAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 15 0.28
55 20 0.38
57 18 0.34
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (56 bp):
ATAAAAAATTATAAATTTTATAAAATCATAAGAAAATTATAAAAATATAAAGAAAT
Found at i:120774666 original size:28 final size:29
Alignment explanation
Indices: 120774572--120774666 Score: 83
Period size: 28 Copynumber: 3.4 Consensus size: 29
120774562 TATAAAAAAA
* *
120774572 TTCTATTTTTTAATAAATT-TTATATTTT
1 TTCTAATTTTTATTAAATTATTATATTTT
* *
120774600 TT-T-ATTTTTATTAAAATTA-AATAATTT
1 TTCTAATTTTTATT-AAATTATTATATTTT
** *
120774627 TTCTAAAATTTATT-ATTTATTATATTTT
1 TTCTAATTTTTATTAAATTATTATATTTT
120774655 TTCTAATTTTTA
1 TTCTAATTTTTA
120774667 ATTAGAGCAG
Statistics
Matches: 51, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
26 7 0.14
27 18 0.35
28 19 0.37
29 7 0.14
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (29 bp):
TTCTAATTTTTATTAAATTATTATATTTT
Found at i:120774780 original size:87 final size:86
Alignment explanation
Indices: 120774675--120774845 Score: 227
Period size: 87 Copynumber: 2.0 Consensus size: 86
120774665 TAATTAGAGC
* * *
120774675 AGGGGCTTAAATGTTTTTTTGAAA-AATTTTGAGGGGCCTTTTAATGTATTTTGAAAGTTCAAGT
1 AGGGGCTTAAATGCTTTTTTGAAAGAAGTTTGA-GGGCCTTTTAATGCATTTTGAAAGTTCAAGT
120774739 ACCCAATTGAGAGGAAAAAAAGT
65 ACCCAATTGAG-GGAAAAAAAGT
* * * * *
120774762 AGGGGCTTAATTGCTTTTTTTAAAGAAGTTTGAGGGTCTTTTTATGCATTTTGAAAGTTCAAGTG
1 AGGGGCTTAAATGCTTTTTTGAAAGAAGTTTGAGGGCCTTTTAATGCATTTTGAAAGTTCAAGTA
* *
120774827 CTCAATTGAGTGAAAAAAA
66 CCCAATTGAGGGAAAAAAA
120774846 TGAAGAGCTT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
86 8 0.11
87 58 0.79
88 7 0.10
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (86 bp):
AGGGGCTTAAATGCTTTTTTGAAAGAAGTTTGAGGGCCTTTTAATGCATTTTGAAAGTTCAAGTA
CCCAATTGAGGGAAAAAAAGT
Found at i:120774867 original size:87 final size:87
Alignment explanation
Indices: 120774679--120774874 Score: 220
Period size: 87 Copynumber: 2.3 Consensus size: 87
120774669 TAGAGCAGGG
* * * *
120774679 GCTTAAATGTTTTTTTGAAAAATTTTGAGGGGCCTTTTAATGTATTTTGAAAGTTCAAGTACCCA
1 GCTTAATTATTTTTTTGAAAAAGTTTGAGGGGCCTTTTAATGCATTTTGAAAGTTCAAGTACCCA
* *
120774744 ATTGAGAGGAAAAAAAGTAGGG
66 ATTGAGAGGAAAAAAAGTAAGA
* * * * *
120774766 GCTTAATTGCTTTTTTT-AAAGAAGTTTGA-GGGTCTTTTTATGCATTTTGAAAGTTCAAGTGCT
1 GCTTAATT-ATTTTTTTGAAA-AAGTTTGAGGGGCCTTTTAATGCATTTTGAAAGTTCAAGTACC
*
120774829 CAATTGAG-TGAAAAAAA-TGAAGA
64 CAATTGAGAGGAAAAAAAGT-AAGA
120774852 GCTTAATTAATTTTTTTGAAAAA
1 GCTTAATT-ATTTTTTTGAAAAA
120774875 AATTAAGAAC
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
85 1 0.01
86 27 0.29
87 50 0.54
88 14 0.15
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (87 bp):
GCTTAATTATTTTTTTGAAAAAGTTTGAGGGGCCTTTTAATGCATTTTGAAAGTTCAAGTACCCA
ATTGAGAGGAAAAAAAGTAAGA
Found at i:120777485 original size:14 final size:14
Alignment explanation
Indices: 120777468--120777519 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
120777458 TTAAACATAC
120777468 ATATTTAATTATTA
1 ATATTTAATTATTA
*
120777482 ATATTTAATCATATA
1 ATATTTAATTAT-TA
**
120777497 ATAAATAATTTATTA
1 ATATTTAA-TTATTA
120777512 A-ATTTAAT
1 ATATTTAAT
120777520 ATTTCAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
13 1 0.03
14 15 0.50
15 11 0.37
16 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATTTAATTATTA
Found at i:120777547 original size:13 final size:14
Alignment explanation
Indices: 120777531--120777572 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
120777521 TTTCAATTTC
120777531 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
120777544 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
120777559 ATTTTAAATAATAT
1 ATTTT-AATAATAT
120777573 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:120777557 original size:16 final size:16
Alignment explanation
Indices: 120777535--120777571 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
120777525 AATTTCATTT
120777535 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
120777552 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
120777567 TAATA
1 TAATA
120777572 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:120777624 original size:15 final size:15
Alignment explanation
Indices: 120777604--120777660 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
120777594 ATGCAATATT
120777604 AATATTTTAATAATA
1 AATATTTTAATAATA
*
120777619 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
120777638 AATATATTAATAATA
1 AATATTTTAATAATA
120777653 AATATTTT
1 AATATTTT
120777661 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:120783927 original size:18 final size:17
Alignment explanation
Indices: 120783900--120783933 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
120783890 TGTCCAAATT
*
120783900 TATTATCTTCATCTAAC
1 TATTATCTTCAACTAAC
120783917 TATTAATCTTCAACTAA
1 TATT-ATCTTCAACTAA
120783934 TATATATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (17 bp):
TATTATCTTCAACTAAC
Found at i:120786315 original size:16 final size:16
Alignment explanation
Indices: 120786296--120786326 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120786286 ATTAGAAGTT
120786296 AATTAAACTAATAAAA
1 AATTAAACTAATAAAA
*
120786312 AATTATACTAATAAA
1 AATTAAACTAATAAA
120786327 TATTAAGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (16 bp):
AATTAAACTAATAAAA
Found at i:120786758 original size:82 final size:82
Alignment explanation
Indices: 120786614--120786773 Score: 234
Period size: 82 Copynumber: 2.0 Consensus size: 82
120786604 AAAAACATAA
* *
120786614 TGTTCTATTCAAAATTTAGATGGTGGTGAAACTTATAGCTGGCCATTTTGATTCTCGATATCTAA
1 TGTTCTATACAAAATTTAGATGGTGGTGAAACTTAGAGCTGGCCATTTTGATTCTCGATATCTAA
120786679 AAATATAAAATTTATTT
66 AAATATAAAATTTATTT
* * * *
120786696 TGTTC-ATACAAAATTTAGATGGTGGTGAAA-TTGAGAGTTGATCGATTTTGATTCTCGGTATCT
1 TGTTCTATACAAAATTTAGATGGTGGTGAAACTT-AGAGCTG-GCCATTTTGATTCTCGATATCT
120786759 AAAAATATAAAATTT
64 AAAAATATAAAATTT
120786774 TGTTTAAAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 29 0.41
82 39 0.56
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (82 bp):
TGTTCTATACAAAATTTAGATGGTGGTGAAACTTAGAGCTGGCCATTTTGATTCTCGATATCTAA
AAATATAAAATTTATTT
Found at i:120787895 original size:22 final size:20
Alignment explanation
Indices: 120787840--120787895 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 20
120787830 AGAAATAATA
120787840 ATAT-ATAAATTTTAAAAAT
1 ATATAATAAATTTTAAAAAT
120787859 ATATAATACATATTTTAAAAAAT
1 ATATAATA-A-ATTTT-AAAAAT
120787882 ATAATAATAAATTT
1 AT-ATAATAAATTT
120787896 AAATAACATT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 1 0.03
22 9 0.28
23 9 0.28
24 6 0.19
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATAATAAATTTTAAAAAT
Found at i:120787896 original size:21 final size:24
Alignment explanation
Indices: 120787823--120787909 Score: 62
Period size: 21 Copynumber: 3.8 Consensus size: 24
120787813 TAAAAAAACT
*
120787823 ATTTACAAGAA-ATAATAATATATAA
1 ATTTA-AAGAACAT-ATAATACATAA
*
120787848 ATTTTAAA-AATATATAATACAT-A
1 A-TTTAAAGAACATATAATACATAA
*
120787871 TTTTAAA-AA-ATATAATA-ATAA
1 ATTTAAAGAACATATAATACATAA
*
120787892 ATTTAAATAACAT-TAATA
1 ATTTAAAGAACATATAATA
120787910 TTAAATAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
20 2 0.04
21 15 0.28
22 15 0.28
23 3 0.06
24 10 0.19
25 5 0.09
26 4 0.07
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (24 bp):
ATTTAAAGAACATATAATACATAA
Found at i:120788049 original size:25 final size:24
Alignment explanation
Indices: 120788016--120788064 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
120788006 TGGGAGATTT
*
120788016 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAATATAAATATAA
120788040 TTATATTTATTTAATATAAATATAA
1 TTAT-TTTATTTAATATAAATATAA
120788065 ATTTTAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTTTATTTAATATAAATATAA
Found at i:120788952 original size:136 final size:136
Alignment explanation
Indices: 120788807--120789051 Score: 328
Period size: 136 Copynumber: 1.8 Consensus size: 136
120788797 ATATTTGTGT
* * *
120788807 ATCTATACTATTATTTAAGCCCCAGACTGAGTTAGTATCATGAGCCAACCGAGTACCAACTCGAT
1 ATCTATACTATTATTTAAGCCCCAGACCGAGTTAGTATCATGAACCAACCGAGCACCAACTCGAT
120788872 TAGGAAAATTACGAAAATATATTCCCATAATTAAAATAAGTTATATTATTCGAGAGTGTTTTAGT
66 TAGGAAAATTACGAAAATATATTCCCATAATTAAAATAAGTTATATTATTCGAGAGTGTTTTAGT
120788937 TTTTTC
131 TTTTTC
*** * * * * * * *
120788943 ATCTATACTATTATTTAAGCCTTTGACCGAGTTGGTGTCATGAATCAATCGGGCATCAACTCGGT
1 ATCTATACTATTATTTAAGCCCCAGACCGAGTTAGTATCATGAACCAACCGAGCACCAACTCGAT
* * * * *
120789008 TATGAAAATTATGAAAATGTCTTTCCATAATTAAAATAAGTTAT
66 TAGGAAAATTACGAAAATATATTCCCATAATTAAAATAAGTTAT
120789052 TCGAGAGTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
136 91 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (136 bp):
ATCTATACTATTATTTAAGCCCCAGACCGAGTTAGTATCATGAACCAACCGAGCACCAACTCGAT
TAGGAAAATTACGAAAATATATTCCCATAATTAAAATAAGTTATATTATTCGAGAGTGTTTTAGT
TTTTTC
Found at i:120790853 original size:24 final size:24
Alignment explanation
Indices: 120790817--120790895 Score: 88
Period size: 24 Copynumber: 3.2 Consensus size: 24
120790807 CTCATGAAAG
*
120790817 CCATAATCTGGAAGTTCACAAAGAA
1 CCAT-ATCAGGAAGTTCACAAAGAA
* *
120790842 CCTTATCGGGAAGTTCACGAAA-AA
1 CCATATCAGGAAGTTCAC-AAAGAA
* *
120790866 CCATATCAGGAAGTTCATAATGAA
1 CCATATCAGGAAGTTCACAAAGAA
120790890 CCATAT
1 CCATAT
120790896 TGGAAAGCTC
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
23 2 0.04
24 38 0.83
25 6 0.13
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (24 bp):
CCATATCAGGAAGTTCACAAAGAA
Found at i:120790854 original size:48 final size:48
Alignment explanation
Indices: 120790802--120790905 Score: 111
Period size: 48 Copynumber: 2.2 Consensus size: 48
120790792 CTATATAATA
* * * *
120790802 GGAAGCTCATG-AAAGCCATAATCTGGAAGTTCACAAAGAACCTTATCG
1 GGAAGCTCACGAAAAACCAT-ATCAGGAAGTTCACAAAGAACCATATCG
* * * *
120790850 GGAAGTTCACGAAAAACCATATCAGGAAGTTCATAATGAACCATATTG
1 GGAAGCTCACGAAAAACCATATCAGGAAGTTCACAAAGAACCATATCG
*
120790898 GAAAGCTC
1 GGAAGCTC
120790906 CGGATAGCCA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
48 38 0.84
49 7 0.16
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.21
Consensus pattern (48 bp):
GGAAGCTCACGAAAAACCATATCAGGAAGTTCACAAAGAACCATATCG
Found at i:120793940 original size:26 final size:26
Alignment explanation
Indices: 120793909--120794016 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
120793899 TGTAATGCCC
120793909 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
120793935 ATCATGGAACATTTACCT-GACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
* *
120793961 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
120793987 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
120794013 ATCA
1 ATCA
120794017 ATTTGTAGCA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 3 0.04
26 69 0.93
27 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:120794573 original size:21 final size:20
Alignment explanation
Indices: 120794541--120794587 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
120794531 ATATAAATGA
*
120794541 ATTTAATATCAATTTAATTC
1 ATTTCATATCAATTTAATTC
*
120794561 ATTTCATACTCAATTTGATTC
1 ATTTCATA-TCAATTTAATTC
*
120794582 AATTCA
1 ATTTCA
120794588 CATCCTAGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.36, C:0.15, G:0.02, T:0.47
Consensus pattern (20 bp):
ATTTCATATCAATTTAATTC
Found at i:120809001 original size:22 final size:21
Alignment explanation
Indices: 120808975--120809015 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
120808965 CATTATTAAC
120808975 ATTATTGTAT-TTAAAATATTTT
1 ATTATT-TATATT-AAATATTTT
120808997 ATTATTTATATTAAATATT
1 ATTATTTATATTAAATATT
120809016 GAGTTTGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTATTTATATTAAATATTTT
Found at i:120809550 original size:16 final size:16
Alignment explanation
Indices: 120809529--120809584 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
120809519 GTTTGGTTCA
* *
120809529 CTGTAATGGAATAGGG
1 CTGTAATAGAATAGAG
*
120809545 CTGTAATTGAATAGAG
1 CTGTAATAGAATAGAG
*
120809561 CTGTAATAGAATAAAG
1 CTGTAATAGAATAGAG
120809577 CTGTAATA
1 CTGTAATA
120809585 AGTAATTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
CTGTAATAGAATAGAG
Found at i:120810300 original size:18 final size:18
Alignment explanation
Indices: 120810277--120810311 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
120810267 ATGTGGCAGT
120810277 CCAACTAGATTTTAAGTG
1 CCAACTAGATTTTAAGTG
120810295 CCAACTAGATTTTAAGT
1 CCAACTAGATTTTAAGT
120810312 ATATCTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (18 bp):
CCAACTAGATTTTAAGTG
Found at i:120810370 original size:40 final size:40
Alignment explanation
Indices: 120810315--120810395 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
120810305 TTTAAGTATA
* * *
120810315 TCTATTAATACATACTTTATTCGGCTAAATTATACAGTTT
1 TCTATTAATACATACTTTATCCGACTAAATTATACAATTT
120810355 TCTATTAATACATACTTTATCCGACTAAATTATACAATTT
1 TCTATTAATACATACTTTATCCGACTAAATTATACAATTT
120810395 T
1 T
120810396 TACTCAAATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.44
Consensus pattern (40 bp):
TCTATTAATACATACTTTATCCGACTAAATTATACAATTT
Found at i:120812184 original size:30 final size:29
Alignment explanation
Indices: 120812122--120812184 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
120812112 ATACAAGATC
* ***
120812122 AAATTAGTATTTCTATTATTAAATGGATT
1 AAATTAGTATTTATATTATTAAAAAAATT
*
120812151 AAATTAGTCTTTATATTATTAAAAAAAATT
1 AAATTAGTATTTATATTATT-AAAAAAATT
120812181 AAAT
1 AAAT
120812185 AAGTTTAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.44
Consensus pattern (29 bp):
AAATTAGTATTTATATTATTAAAAAAATT
Found at i:120819909 original size:30 final size:30
Alignment explanation
Indices: 120819873--120819935 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
120819863 ATTTATTTTA
120819873 TTGTTAACTTTGTTATTATTTTA-AAGACAT
1 TTGTTAACTTTGTTATTATTTTAGAA-ACAT
*
120819903 TTGTTAATTTTGTTATTATTTTAGAAACAT
1 TTGTTAACTTTGTTATTATTTTAGAAACAT
120819933 TTG
1 TTG
120819936 ATTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.56
Consensus pattern (30 bp):
TTGTTAACTTTGTTATTATTTTAGAAACAT
Found at i:120822326 original size:6 final size:6
Alignment explanation
Indices: 120822306--120822360 Score: 74
Period size: 6 Copynumber: 9.0 Consensus size: 6
120822296 ATAAGGTACT
* * *
120822306 CTGTGTA CTGATA CTGCTA CTGTTA CTGTTA CTGTTA TTGTTA CTGTTA
1 CTGT-TA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA
120822355 CTGTTA
1 CTGTTA
120822361 TGGTGTATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
6 40 0.93
7 3 0.07
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.47
Consensus pattern (6 bp):
CTGTTA
Found at i:120824129 original size:30 final size:30
Alignment explanation
Indices: 120824086--120824143 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
120824076 CACAAGCTAT
* * *
120824086 CACACGGCTAACTCACATGGCCGTGTGTCG
1 CACACGGCCAACTCACACGGCCATGTGTCG
*
120824116 CACACGTCCAACTCACACGGCCATGTGT
1 CACACGGCCAACTCACACGGCCATGTGT
120824144 TTTAAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.36, G:0.22, T:0.19
Consensus pattern (30 bp):
CACACGGCCAACTCACACGGCCATGTGTCG
Found at i:120825589 original size:50 final size:50
Alignment explanation
Indices: 120825511--120825671 Score: 168
Period size: 50 Copynumber: 3.2 Consensus size: 50
120825501 AACACCCTAA
*
120825511 TTTTTTTTTTAAATTTGGTACAAT--GGTGCAGACCATCAGTGTTCCAACACC
1 TTTTTTTTTT-AATTTGGT--AATGGGGTGCAGACCATCAGTGTCCCAACACC
120825562 TTTTTTTTTTAATTTGGTAATGGGGTGCCAG-CCATCAGTGTCCCAACACC
1 TTTTTTTTTTAATTTGGTAATGGGGTG-CAGACCATCAGTGTCCCAACACC
* * ** ** * *
120825612 AATTTTTTTTAAACCTGGTGCTGGGGTGCCGA-CATCAATGTCCCAACACC
1 -TTTTTTTTTTAATTTGGTAATGGGGTGCAGACCATCAGTGTCCCAACACC
120825662 TTTTTTTTTT
1 TTTTTTTTTT
120825672 TAAATCTAGT
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
48 3 0.03
49 8 0.09
50 49 0.52
51 34 0.36
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (50 bp):
TTTTTTTTTTAATTTGGTAATGGGGTGCAGACCATCAGTGTCCCAACACC
Found at i:120825618 original size:51 final size:51
Alignment explanation
Indices: 120825467--120825713 Score: 164
Period size: 50 Copynumber: 4.8 Consensus size: 51
120825457 TATTTTTTAA
* * * * * *
120825467 AATTTGATATTGGGGTGTCGGCCATTAATGTCTCAACACCCTAATTTTTTTTTT
1 AATTTGGTAATGGGGTGCCAGCCATCAATGTCCCAACA-CC-AA-TTTTTTTTT
* * *
120825521 AAATTTGGTACAAT--GGTG-CAGACCATCAGTGTTCCAACACC-TTTTTTTTTT
1 -AATTTGGT--AATGGGGTGCCAG-CCATCAATGTCCCAACACCAATTTTTTTTT
* *
120825572 AATTTGGTAATGGGGTGCCAGCCATCAGTGTCCCAACACCAATTTTTTTTA
1 AATTTGGTAATGGGGTGCCAGCCATCAATGTCCCAACACCAATTTTTTTTT
** ** * **
120825623 AACCTGGTGCTGGGGTGCC-GACATCAATGTCCCAACACCTTTTTTTTTTT
1 AATTTGGTAATGGGGTGCCAGCCATCAATGTCCCAACACCAATTTTTTTTT
* * * * *
120825673 AAATCTAGTACA-AGGGTGCCGGCCATCAATGCCCCAACACC
1 -AATTTGGTA-ATGGGGTGCCAGCCATCAATGTCCCAACACC
120825714 CAAAAAATAT
Statistics
Matches: 155, Mismatches: 27, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
48 3 0.02
50 56 0.36
51 48 0.31
52 18 0.12
54 4 0.03
55 24 0.15
57 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (51 bp):
AATTTGGTAATGGGGTGCCAGCCATCAATGTCCCAACACCAATTTTTTTTT
Found at i:120827427 original size:2 final size:2
Alignment explanation
Indices: 120827420--120827444 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
120827410 GTTCTATTAG
120827420 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
120827445 ATTTACTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:120838294 original size:41 final size:40
Alignment explanation
Indices: 120838199--120838341 Score: 144
Period size: 41 Copynumber: 3.5 Consensus size: 40
120838189 TATCAAATCG
* *
120838199 CCGGCATTTAGCCTGCTAGATTTTAAACCCGAATTCA-TCA
1 CCGGCATTTAGCCTGCTAGACTTTAAGCCCGAA-TCATTCA
*** * *
120838239 CCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTCATTCA
1 CCGGCATTTAGCCTGCTAGACTTTAAGCCCGAA-TCATTCA
* * *
120838280 CCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCA
1 CCGGCATTTAGCCTGCTAGACTTTAAGCCCGA-ATCA-TTCA
120838322 CCGGCATTATAGCCTGCTAG
1 CCGGCATT-TAGCCTGCTAG
120838342 GCCCGAAGCC
Statistics
Matches: 82, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
40 29 0.35
41 30 0.37
42 13 0.16
43 10 0.12
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (40 bp):
CCGGCATTTAGCCTGCTAGACTTTAAGCCCGAATCATTCA
Found at i:120838350 original size:43 final size:42
Alignment explanation
Indices: 120838276--120838356 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 42
120838266 TCTGAACTCA
* **
120838276 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
120838318 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGATA
120838357 ATATTATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 12 0.34
43 23 0.66
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:120838554 original size:28 final size:28
Alignment explanation
Indices: 120838516--120838622 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
120838506 GAATCATTCG
* * *
120838516 ATATTTTGCACACGAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
120838544 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
120838572 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
120838600 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
120838623 ATTTGATTGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:120839868 original size:43 final size:43
Alignment explanation
Indices: 120839820--120839970 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
120839810 GATTAACGAG
* * *
120839820 ATGTGATTATGTTTAAGACCATGTCTGGGACATTGGTATCATT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
* *
120839863 ATGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * * * * *
120839906 ATTTGATTTCATGTAAGATCATAG-CTGGG-CTATCGGCGTCGA-T
1 ATGTGATTACGTGTAAGACCAT-GTCTGGGAC-ATTGGCATC-ATT
* *
120839949 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACGTGTAAGACCAT
120839971 ATCCGAGATA
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
43 87 0.99
44 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:120842139 original size:44 final size:45
Alignment explanation
Indices: 120842049--120842158 Score: 150
Period size: 44 Copynumber: 2.4 Consensus size: 45
120842039 GACAGAACGA
*
120842049 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
120842095 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* **
120842139 AATAATTCATGTAAGTCCAT
1 AATGAGCCATGTAAGTCCAT
120842159 GTCAAAGACA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.61
46 22 0.39
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:120845808 original size:17 final size:18
Alignment explanation
Indices: 120845777--120845810 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
120845767 AATTTAACTT
120845777 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
120845795 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
120845811 TTGTAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:120846010 original size:14 final size:15
Alignment explanation
Indices: 120845981--120846013 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
120845971 TCATGTTCAA
*
120845981 GGTTCTAGTGTTTTG
1 GGTTCTAGTATTTTG
120845996 GGTTCTA-TATTTTG
1 GGTTCTAGTATTTTG
120846010 GGTT
1 GGTT
120846014 TAGGGTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.09, C:0.06, G:0.30, T:0.55
Consensus pattern (15 bp):
GGTTCTAGTATTTTG
Found at i:120847830 original size:49 final size:49
Alignment explanation
Indices: 120847749--120847843 Score: 138
Period size: 49 Copynumber: 1.9 Consensus size: 49
120847739 ATCTATTTAT
* * *
120847749 AGGTTGAAAAACCTTCTTCTAATCAATGTCAAATAGAA-ACAGTGTAGTA
1 AGGTTGAAAAACCTTATTCTAATAAATATCAAATAGAAGA-AGTGTAGTA
*
120847798 AGGTTGAAACACCTTATTCTAATAAATATCAAATAGAAGAAGTGTA
1 AGGTTGAAAAACCTTATTCTAATAAATATCAAATAGAAGAAGTGTA
120847844 CTTCTATACG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 40 0.98
50 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (49 bp):
AGGTTGAAAAACCTTATTCTAATAAATATCAAATAGAAGAAGTGTAGTA
Found at i:120850683 original size:25 final size:26
Alignment explanation
Indices: 120850635--120850683 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
120850625 TATAATCTCC
**
120850635 AAAATTTCTATAATAATTTTTTAAGG
1 AAAATTTCTATAATAATTAATTAAGG
120850661 AAAATTT-TATAATAATTAATTAA
1 AAAATTTCTATAATAATTAATTAA
120850684 ATAAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (26 bp):
AAAATTTCTATAATAATTAATTAAGG
Found at i:120850788 original size:21 final size:20
Alignment explanation
Indices: 120850753--120850808 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
120850743 GATTTTAATG
120850753 TTTAAGGTT-GGATTTAGGA-
1 TTTAAGGTTAGGATTT-GGAT
120850772 TTTAGAGGTTAGGATTTGGAT
1 TTTA-AGGTTAGGATTTGGAT
120850793 TTTAAGGTTTAGGATT
1 TTTAAGG-TTAGGATT
120850809 AAGGTCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.12
20 11 0.33
21 18 0.55
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (20 bp):
TTTAAGGTTAGGATTTGGAT
Found at i:120851997 original size:18 final size:18
Alignment explanation
Indices: 120851970--120852004 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
120851960 ATAAAGTGTA
* *
120851970 TATAATAAAATTAAAATG
1 TATAAAAAAATCAAAATG
120851988 TATAAAAAAATCAAAAT
1 TATAAAAAAATCAAAAT
120852005 AGAGCTTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
TATAAAAAAATCAAAATG
Found at i:120852663 original size:27 final size:27
Alignment explanation
Indices: 120852633--120852697 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
120852623 ACCTAGTAAC
*
120852633 AAATTTT-AAAAATAAAAAAAATCTTTA
1 AAATTTTAAAAAAT-AAAAAAATCATTA
* * *
120852660 AAATTTTAAAAAATTAGAAAGTCATTA
1 AAATTTTAAAAAATAAAAAAATCATTA
120852687 AAATTTTAAAA
1 AAATTTTAAAA
120852698 TTTCTATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 27 0.82
28 6 0.18
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (27 bp):
AAATTTTAAAAAATAAAAAAATCATTA
Found at i:120855281 original size:15 final size:16
Alignment explanation
Indices: 120855256--120855289 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
120855246 AAAATTTAAT
120855256 TTTATTATTTTAATAA
1 TTTATTATTTTAATAA
*
120855272 TTTA-TATTTTTATAA
1 TTTATTATTTTAATAA
120855287 TTT
1 TTT
120855290 TTAAAAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTATTTTAATAA
Found at i:120856455 original size:22 final size:21
Alignment explanation
Indices: 120856413--120856456 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
120856403 AAATTTAAAT
*
120856413 ATAAAAAAATAAAAAATTTAA
1 ATAAAAAAATAAAAAACTTAA
*
120856434 ATAAAAAACTAAAATAACTTAA
1 ATAAAAAAATAAAA-AACTTAA
120856456 A
1 A
120856457 AAATTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (21 bp):
ATAAAAAAATAAAAAACTTAA
Found at i:120856882 original size:3 final size:3
Alignment explanation
Indices: 120856874--120856914 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
120856864 TTGATTTAAT
120856874 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
120856915 TAGATAAGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:120859214 original size:7 final size:7
Alignment explanation
Indices: 120859202--120859234 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
120859192 AATTGAGGTA
120859202 AGTTCGT
1 AGTTCGT
120859209 AGTTCGT
1 AGTTCGT
120859216 AGTTCGT
1 AGTTCGT
120859223 AGTTCGT
1 AGTTCGT
120859230 AGTTC
1 AGTTC
120859235 TTGAACTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.15, G:0.27, T:0.42
Consensus pattern (7 bp):
AGTTCGT
Found at i:120859352 original size:2 final size:2
Alignment explanation
Indices: 120859345--120859376 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
120859335 TTATGGAGAC
120859345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120859377 GGATATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120859611 original size:36 final size:36
Alignment explanation
Indices: 120859564--120859666 Score: 111
Period size: 35 Copynumber: 2.9 Consensus size: 36
120859554 ATATGATATT
*
120859564 GGTTTATCCGACTAGCGCTGAGCGCAAAACATCGTC
1 GGTTTATCCGACTAGTGCTGAGCGCAAAACATCGTC
* * * *
120859600 GGTTTATCCGACCAGTGC--AGGGCACAACTATTGTC
1 GGTTTATCCGACTAGTGCTGAGCGCAAAAC-ATCGTC
* * *
120859635 AGTTTATCTGACTAGTGCTGGGCGCAAAACAT
1 GGTTTATCCGACTAGTGCTGAGCGCAAAACAT
120859667 TATCGGCTTA
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
34 8 0.15
35 20 0.38
36 18 0.34
37 7 0.13
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (36 bp):
GGTTTATCCGACTAGTGCTGAGCGCAAAACATCGTC
Found at i:120859652 original size:35 final size:35
Alignment explanation
Indices: 120859601--120859705 Score: 97
Period size: 35 Copynumber: 3.0 Consensus size: 35
120859591 AACATCGTCG
*
120859601 GTTTATCCGACCAGTGCAGGGCACAACTATTGTCA
1 GTTTATCTGACCAGTGCAGGGCACAACTATTGTCA
* * * * *
120859636 GTTTATCTGACTAGTGCTGGGCGCAAAAC-ATTATCG
1 GTTTATCTGACCAGTGC-AGG-GCACAACTATTGTCA
* *
120859672 GCTTAAT-TGACCAGTGCAGGACACAACTATTGTC
1 G-TTTATCTGACCAGTGCAGGGCACAACTATTGTC
120859706 GGTATACTCA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
34 5 0.09
35 22 0.41
36 17 0.31
37 10 0.19
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (35 bp):
GTTTATCTGACCAGTGCAGGGCACAACTATTGTCA
Found at i:120859660 original size:71 final size:71
Alignment explanation
Indices: 120859565--120859735 Score: 195
Period size: 71 Copynumber: 2.4 Consensus size: 71
120859555 TATGATATTG
* * *
120859565 GTTTATCCGACTAGCGCTGAGCGCAAAACATCGTCGG-TTTATCCGACCAGTGCAGGGCACAACT
1 GTTTATCCGACTAGCGCTGAGCGCAAAACATCATCGGCTTAAT-CGACCAGTGCAGGACACAACT
120859629 ATTGTCA
65 ATTGTCA
* * * * *
120859636 GTTTATCTGACTAGTGCTGGGCGCAAAACATTATCGGCTTAATTGACCAGTGCAGGACACAACTA
1 GTTTATCCGACTAGCGCTGAGCGCAAAACATCATCGGCTTAATCGACCAGTGCAGGACACAACTA
*
120859701 TTGTCG
66 TTGTCA
* *
120859707 GTATA-CTCAACTAGCGCT-AGGCGCAAAAC
1 GTTTATC-CGACTAGCGCTGA-GCGCAAAAC
120859736 TTAACTACGG
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
70 1 0.01
71 78 0.94
72 4 0.05
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (71 bp):
GTTTATCCGACTAGCGCTGAGCGCAAAACATCATCGGCTTAATCGACCAGTGCAGGACACAACTA
TTGTCA
Found at i:120869896 original size:3 final size:3
Alignment explanation
Indices: 120869888--120869916 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
120869878 TAGACCCATT
120869888 CCA CCA CCA CCA CCA CCA CCA CCA CCA CC
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CC
120869917 CAGCTCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:120871383 original size:44 final size:42
Alignment explanation
Indices: 120871332--120871483 Score: 128
Period size: 43 Copynumber: 3.5 Consensus size: 42
120871322 ATATGTGGTA
* * *
120871332 TCGTGTAAGACAATGTCT-GGCACTTTGGCATCGATTTGTGATT
1 TCGTGTAAGACAATGTCTAGG-ACATTGGCATC-ATATATGATT
*
120871375 TACGTGTAAGACCATGTCTAGGACATTGGCATCATATATGATT
1 T-CGTGTAAGACAATGTCTAGGACATTGGCATCATATATGATT
* * * * *
120871418 TCGTGTAAAACCATAT-TAGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACAATGTCTA-GGACATTGGCATC-ATATATGATT
* * * *
120871461 ACATGTAAGACTACGTCTAGGAC
1 TCGTGTAAGACAATGTCTAGGAC
120871484 GTTAGCATTG
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 25 0.28
43 33 0.37
44 28 0.31
45 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACAATGTCTAGGACATTGGCATCATATATGATT
Found at i:120871460 original size:43 final size:44
Alignment explanation
Indices: 120871357--120871468 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 44
120871347 TCTGGCACTT
* * *
120871357 TGGCATCGAT-TTGTGATTTACGTGTAAGACCATGTCTAGGACAT
1 TGGCATCGATATT-TGATTTACGTGTAAAACCATATCTAGGACAG
*
120871401 TGGCATC-ATATATGATTT-CGTGTAAAACCATAT-TAGGGACAG
1 TGGCATCGATATTTGATTTACGTGTAAAACCATATCTA-GGACAG
*
120871443 TGGCATCGATATTTGA-TTACATGTAA
1 TGGCATCGATATTTGATTTACGTGTAA
120871469 GACTACGTCT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
41 2 0.03
42 27 0.47
43 21 0.36
44 8 0.14
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (44 bp):
TGGCATCGATATTTGATTTACGTGTAAAACCATATCTAGGACAG
Found at i:120874701 original size:29 final size:29
Alignment explanation
Indices: 120874639--120874741 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
120874629 GTGACGAGAT
* * *
120874639 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
120874668 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
120874697 TGGCACTATGTGTGTGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
120874726 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
120874742 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:120881680 original size:29 final size:29
Alignment explanation
Indices: 120881618--120881720 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
120881608 ATGACGAGAT
* * *
120881618 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
120881647 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
120881676 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
120881705 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
120881721 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:120893515 original size:42 final size:43
Alignment explanation
Indices: 120893408--120893548 Score: 142
Period size: 42 Copynumber: 3.3 Consensus size: 43
120893398 ATATGTGTTA
* * * *
120893408 TCGTGTAAGACCAC-GTCTGGGACGTTGGCAGCGATTTGTGATTT
1 TCGTGTAAGACC-CTGTCTGGGACATTGGCATCGATATATGA-TT
* * * *
120893452 TCGTGTAATACCATGTTTGGGACATTGACATCG-TATATGATT
1 TCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATT
* *
120893494 TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATT
* *
120893537 ACATGTAAGACC
1 TCGTGTAAGACC
120893549 ACATTTGGGA
Statistics
Matches: 79, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 30 0.38
43 23 0.29
44 26 0.33
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATT
Found at i:120893558 original size:43 final size:40
Alignment explanation
Indices: 120893467--120893559 Score: 96
Period size: 43 Copynumber: 2.2 Consensus size: 40
120893457 TAATACCATG
* * *
120893467 TTTGGGACATTGACATCGTATATGATTTCGTGTAAGACCC
1 TTTGGGACAGTGACATCGTATATGATTACATGTAAGACCC
* *
120893507 TGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCAC
1 T-T-TGGGACAGTGACATCG-TATATGATTACATGTAAGACC-C
120893551 ATTTGGGAC
1 -TTTGGGAC
120893560 GTTGAAATTG
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
40 1 0.02
41 1 0.02
42 14 0.33
43 24 0.56
44 2 0.05
45 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (40 bp):
TTTGGGACAGTGACATCGTATATGATTACATGTAAGACCC
Found at i:120896269 original size:12 final size:11
Alignment explanation
Indices: 120896239--120896298 Score: 51
Period size: 9 Copynumber: 5.7 Consensus size: 11
120896229 TACGAGTTGG
120896239 TACAAGTATG-
1 TACAAGTATGT
120896249 TACTTAAGTTATGT
1 TAC--AAG-TATGT
120896263 TACAAGT-TG-
1 TACAAGTATGT
120896272 TACAAGTA-GT
1 TACAAGTATGT
120896282 TACAAGT-TG-
1 TACAAGTATGT
120896291 TACAAGTA
1 TACAAGTA
120896299 GGTACACTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
9 15 0.36
10 13 0.31
11 1 0.02
12 6 0.14
13 4 0.10
14 3 0.07
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (11 bp):
TACAAGTATGT
Found at i:120896277 original size:9 final size:9
Alignment explanation
Indices: 120896263--120896297 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
120896253 TAAGTTATGT
120896263 TACAAGTTG
1 TACAAGTTG
*
120896272 TACAAGTAG
1 TACAAGTTG
120896281 TTACAAGTTG
1 -TACAAGTTG
120896291 TACAAGT
1 TACAAGT
120896298 AGGTACACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (9 bp):
TACAAGTTG
Found at i:120896285 original size:19 final size:19
Alignment explanation
Indices: 120896261--120896304 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
120896251 CTTAAGTTAT
120896261 GTTACAAGTTGTACAAGTA
1 GTTACAAGTTGTACAAGTA
120896280 GTTACAAGTTGTACAAGTA
1 GTTACAAGTTGTACAAGTA
*
120896299 GGTACA
1 GTTACA
120896305 CTAAGCTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (19 bp):
GTTACAAGTTGTACAAGTA
Found at i:120905390 original size:46 final size:44
Alignment explanation
Indices: 120905298--120905461 Score: 127
Period size: 46 Copynumber: 3.6 Consensus size: 44
120905288 GTGCCGACGC
* *
120905298 CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGGAGCCGATG
* *
120905343 CATGTCCCAGAAATGTCTTACACTGGCTTACATC-CGGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGGA-GCCGATG
* * * * * *
120905389 CATGT-CCAGGACATCTCTTACACTAGCACTCGTCTC-AATTCTGATG
1 CATGTCCCA-GACATGTCTTACACT-G-ACACATCTCGGA-GCCGATG
120905435 CAATGTCCCAGACATGGTCTTACACTG
1 C-ATGTCCCAGACAT-GTCTTACACTG
120905462 GCTCTCATAA
Statistics
Matches: 95, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
44 12 0.13
45 19 0.20
46 39 0.41
47 12 0.13
48 13 0.14
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGGAGCCGATG
Found at i:120905479 original size:94 final size:92
Alignment explanation
Indices: 120905337--120905509 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 92
120905327 CATCTCGTAG
** *
120905337 CTGATGCATGTCCCAGAAATGTCTTACACTGGCTTACATCCGGAGGCCGATGCATGTC-CAGGAC
1 CTGATGCATGTCCCAGAAATGTCTTACACTGGCTTACATCAAGAGGCCGATGCATGTCTCA-GAA
120905401 ATCTCTTACACTAGCACTCGTCTCAATT
65 ATCTCTTACACTAGCACTCGTCTCAATT
* *
120905429 CTGATGCAATGTCCCAGACATGGTCTTACACTGGCTCT-CAT-AATATGGCCGATGCATGTCTCA
1 CTGATGC-ATGTCCCAGAAAT-GTCTTACACTGGCT-TACATCAAGA-GGCCGATGCATGTCTCA
*
120905492 GAAATGTCTTACACTAGC
62 GAAATCTCTTACACTAGC
120905510 CCACAATAAC
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 47 0.67
95 3 0.04
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
CTGATGCATGTCCCAGAAATGTCTTACACTGGCTTACATCAAGAGGCCGATGCATGTCTCAGAAA
TCTCTTACACTAGCACTCGTCTCAATT
Found at i:120916154 original size:12 final size:12
Alignment explanation
Indices: 120916139--120916201 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
120916129 TGTTATCAAT
120916139 TTATTATTATAA
1 TTATTATTATAA
**
120916151 TTATTATTATGGT
1 TTATTATTAT-AA
*
120916164 TTTTTATT-TAA
1 TTATTATTATAA
*
120916175 ATATTATTATTAA
1 TTATTATTA-TAA
120916188 -TATTATTAT-A
1 TTATTATTATAA
120916198 TTAT
1 TTAT
120916202 GAAATAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 10 0.25
12 19 0.47
13 10 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TTATTATTATAA
Found at i:120916512 original size:3 final size:3
Alignment explanation
Indices: 120916500--120916542 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
120916490 AAATTATTAA
* *
120916500 ATT ATA ATT ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
120916543 AAATAAAGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:120916687 original size:3 final size:3
Alignment explanation
Indices: 120916670--120916725 Score: 62
Period size: 3 Copynumber: 19.0 Consensus size: 3
120916660 GAATTAAATT
* *
120916670 TTA TTA -TA TTA -TA TTA TTA CTA TAA TATA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
*
120916714 TTA ATA TTA TTA
1 TTA TTA TTA TTA
120916726 ACTAACACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 4 0.09
3 38 0.86
4 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:120916698 original size:16 final size:16
Alignment explanation
Indices: 120916674--120916704 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120916664 TAAATTTTAT
*
120916674 TATATTATATTATTAC
1 TATAATATATTATTAC
120916690 TATAATATATTATTA
1 TATAATATATTATTA
120916705 TTATTATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TATAATATATTATTAC
Found at i:120918970 original size:53 final size:53
Alignment explanation
Indices: 120918829--120918979 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
120918819 ACAAGTGTGC
* **
120918829 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
120918882 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
120918935 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
120918980 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:120926484 original size:53 final size:53
Alignment explanation
Indices: 120926343--120926493 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
120926333 ACAAGTGTGC
* **
120926343 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
120926396 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
120926449 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
120926494 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:120928154 original size:34 final size:36
Alignment explanation
Indices: 120928113--120928180 Score: 106
Period size: 34 Copynumber: 1.9 Consensus size: 36
120928103 AAGCGGAAAA
120928113 GTGAATTTGAATTG-AA-TGAGAATTGA-ATTGAATT
1 GTGAATTTGAATTGAAAGTGA-AATTGACATTGAATT
120928147 GTGAATTTGAATTGAAAGTGAAATTGACATTGAA
1 GTGAATTTGAATTGAAAGTGAAATTGACATTGAA
120928181 AGTGATTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
34 14 0.45
35 8 0.26
36 9 0.29
ACGTcount: A:0.40, C:0.01, G:0.24, T:0.35
Consensus pattern (36 bp):
GTGAATTTGAATTGAAAGTGAAATTGACATTGAATT
Found at i:120928181 original size:18 final size:17
Alignment explanation
Indices: 120928110--120928185 Score: 84
Period size: 18 Copynumber: 4.4 Consensus size: 17
120928100 AGAAAGCGGA
*
120928110 AAAGTGAATTTGAATTG
1 AAAGTGAAATTGAATTG
120928127 -AA-TGAGAATTGAATTG
1 AAAGTGA-AATTGAATTG
* *
120928143 AATTGTGAATTTGAATTG
1 AA-AGTGAAATTGAATTG
120928161 AAAGTGAAATTGACATTG
1 AAAGTGAAATTGA-ATTG
120928179 AAAGTGA
1 AAAGTGA
120928186 TTTGAAATGT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
15 3 0.06
16 11 0.22
17 10 0.20
18 22 0.45
19 3 0.06
ACGTcount: A:0.42, C:0.01, G:0.24, T:0.33
Consensus pattern (17 bp):
AAAGTGAAATTGAATTG
Found at i:120928189 original size:34 final size:33
Alignment explanation
Indices: 120928110--120928191 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 33
120928100 AGAAAGCGGA
120928110 AAAGTGAATTTGAATTGAATGAGAATTGAATTG
1 AAAGTGAATTTGAATTGAATGAGAATTGAATTG
*
120928143 AATTGTGAATTTGAATTGAAAGTGA-AATTGACATTG
1 AA-AGTGAATTTGAATTG-AA-TGAGAATTGA-ATTG
120928179 AAAGTG-ATTTGAA
1 AAAGTGAATTTGAA
120928192 ATGTGAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
33 2 0.05
34 21 0.49
35 11 0.26
36 9 0.21
ACGTcount: A:0.41, C:0.01, G:0.23, T:0.34
Consensus pattern (33 bp):
AAAGTGAATTTGAATTGAATGAGAATTGAATTG
Found at i:120928198 original size:18 final size:18
Alignment explanation
Indices: 120928110--120928198 Score: 80
Period size: 17 Copynumber: 5.1 Consensus size: 18
120928100 AGAAAGCGGA
120928110 AAAGTGAATTTG-AATTG
1 AAAGTGAATTTGAAATTG
* *
120928127 AATGAGAA-TTG-AATTG
1 AAAGTGAATTTGAAATTG
*
120928143 AATTGTGAATTTG-AATTG
1 AA-AGTGAATTTGAAATTG
* *
120928161 AAAGTGAAATTGACATTG
1 AAAGTGAATTTGAAATTG
120928179 AAAGTG-ATTTGAAATGTG
1 AAAGTGAATTTGAAAT-TG
120928197 AA
1 AA
120928199 TTTGGAGACC
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
16 10 0.17
17 26 0.43
18 24 0.40
ACGTcount: A:0.42, C:0.01, G:0.24, T:0.34
Consensus pattern (18 bp):
AAAGTGAATTTGAAATTG
Found at i:120930780 original size:48 final size:47
Alignment explanation
Indices: 120930478--120930835 Score: 196
Period size: 46 Copynumber: 7.6 Consensus size: 47
120930468 GATGCCGACC
* * * * *
120930478 CATGTCCCAGACATGGTCTTACACTGGCTTCCATATAGT-GTGGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-TCTATAT-CTCGAGGCCGATG
* * * * *
120930527 CCATGTCCCAGGCAAGTCTTACACTAGCTCTCATCTATCG-GTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCT-ATATCTCGAG-GCCGATG
* * * * * * * *
120930576 TCATGTCCCAGACAGGTCTTACACTAACAC-ACA--ACAAGG-TGAAG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGGCCGATG
* * * **
120930620 CCATATCCCAGACAGGTCTTACACTAGCTTGTATATCGAGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGC-TCTATATCTCGAGGCCGATG
* * ** * *
120930669 CATGTACCAAACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGGCCGATG
* * *
120930715 CATGTGCTAGACATGTCTTACACTAGCT-TAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT--ATATCTCGAGGCCGATG
* ** * **
120930763 CATGTCCCCGACATGTCTTACACCGGCTCTCATA-CT-GTGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-ATATCTCGAGGCCGATG
120930809 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
120930836 ACACATATCA
Statistics
Matches: 237, Mismatches: 58, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
44 28 0.12
45 3 0.01
46 70 0.30
47 5 0.02
48 67 0.28
49 52 0.22
50 12 0.05
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGGCCGATG
Found at i:120934144 original size:19 final size:20
Alignment explanation
Indices: 120934122--120934159 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
120934112 TATAATATTT
120934122 TATTACTTT-AATAAAATAA
1 TATTACTTTAAATAAAATAA
*
120934141 TATTATTTTAAATAAAATA
1 TATTACTTTAAATAAAATA
120934160 TTAAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TATTACTTTAAATAAAATAA
Found at i:120941729 original size:5 final size:5
Alignment explanation
Indices: 120941719--120941746 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
120941709 GAATGAAAAA
120941719 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
120941747 GTGCTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:120950287 original size:27 final size:26
Alignment explanation
Indices: 120950232--120950302 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
120950222 TTGGCCTTTT
120950232 TTTTGTTTTTTT-ATTTTTATTTTCCC
1 TTTTGTTTTTTTCATTTTTATTTT-CC
120950258 TTTTGTTTTTTTCATTTTTCATTCTT-C
1 TTTTGTTTTTTTCATTTTT-ATT-TTCC
*
120950285 TTTTCTTATTTTTC-TTTT
1 TTTTGTT-TTTTTCATTTT
120950303 CTTTTTCTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
26 12 0.30
27 17 0.43
28 9 0.22
29 2 0.05
ACGTcount: A:0.07, C:0.13, G:0.03, T:0.77
Consensus pattern (26 bp):
TTTTGTTTTTTTCATTTTTATTTTCC
Found at i:120952829 original size:8 final size:8
Alignment explanation
Indices: 120952809--120952859 Score: 59
Period size: 8 Copynumber: 6.2 Consensus size: 8
120952799 CTAATTTGAC
120952809 AAAA-AAA
1 AAAATAAA
*
120952816 AAAATAAC
1 AAAATAAA
120952824 AAAATAAA
1 AAAATAAA
120952832 AATAATAAAA
1 AA-AAT-AAA
*
120952842 AAAATAAC
1 AAAATAAA
120952850 AAAATAAA
1 AAAATAAA
120952858 AA
1 AA
120952860 CAATCTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 4 0.11
8 22 0.59
9 6 0.16
10 5 0.14
ACGTcount: A:0.84, C:0.04, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:120952832 original size:14 final size:14
Alignment explanation
Indices: 120952810--120952859 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
120952800 TAATTTGACA
*
120952810 AAAAAAAAAATAAC
1 AAAATAAAAATAAC
120952824 AAAATAAAAATAA-
1 AAAATAAAAATAAC
*
120952837 TAAA-AAAAATAAC
1 AAAATAAAAATAAC
120952850 AAAATAAAAA
1 AAAATAAAAA
120952860 CAATCTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 8 0.26
13 6 0.19
14 17 0.55
ACGTcount: A:0.84, C:0.04, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAATAAAAATAAC
Found at i:120952844 original size:17 final size:16
Alignment explanation
Indices: 120952809--120952859 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 16
120952799 CTAATTTGAC
*
120952809 AAAA-AAAAAAATAAC
1 AAAATAAAAAAATAAA
120952824 AAAATAAAAATAATAAAA
1 AAAATAAAAA-AAT-AAA
*
120952842 AAAATAACAAAATAAA
1 AAAATAAAAAAATAAA
120952858 AA
1 AA
120952860 CAATCTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 4 0.13
16 10 0.32
17 6 0.19
18 11 0.35
ACGTcount: A:0.84, C:0.04, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAATAAAAAAATAAA
Found at i:120953093 original size:77 final size:77
Alignment explanation
Indices: 120953008--120953158 Score: 239
Period size: 77 Copynumber: 2.0 Consensus size: 77
120952998 CATTTTATGA
* * *
120953008 GCATAAATTAAATATTGAAGTGTTTATGAGCTCAGTTCAATTGAATTTAGGTCAAATCATGTTAC
1 GCATAAATTAAATATTGAAGTGTTCATGAGCTCAGCTCAATTAAATTTAGGTCAAATCATGTTAC
*
120953073 TTAACCAAATTT
66 CTAACCAAATTT
* *
120953085 GCATAAATTAAATATTGAGGTGTTCATGAGCTGAGCTCAATTAAATTTAGGTCAAATCATGTTAC
1 GCATAAATTAAATATTGAAGTGTTCATGAGCTCAGCTCAATTAAATTTAGGTCAAATCATGTTAC
*
120953150 CTGACCAAA
66 CTAACCAAA
120953159 CTTAATTCAG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 67 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (77 bp):
GCATAAATTAAATATTGAAGTGTTCATGAGCTCAGCTCAATTAAATTTAGGTCAAATCATGTTAC
CTAACCAAATTT
Found at i:120964690 original size:93 final size:93
Alignment explanation
Indices: 120964578--120964749 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
120964568 CGCCCATAAG
* *
120964578 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
120964643 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
120964671 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
120964736 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
120964750 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:120964746 original size:46 final size:46
Alignment explanation
Indices: 120964571--120964746 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
120964561 TGTAACCCGC
* * *
120964571 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
120964617 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
120964667 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
120964710 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
120964747 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:120968115 original size:245 final size:245
Alignment explanation
Indices: 120967685--120968181 Score: 976
Period size: 245 Copynumber: 2.0 Consensus size: 245
120967675 TTCGCTGTCT
120967685 CAAATTCAAGTCTTTTTGTGACATCAAGTATTTAAGACTTTTGTGATCGGTATATACTCGGCACT
1 CAAATTCAAGTCTTTTTGTGACATCAAGTATTTAAGACTTTTGTGATCGGTATATACTCGGCACT
*
120967750 TTTCACCATACAAATAATGTCGCCAAATCTTCAAAGCAAATACCACCGCAGCCAATTCCAAATCG
66 TTTCACCATACAAATAATGTAGCCAAATCTTCAAAGCAAATACCACCGCAGCCAATTCCAAATCG
120967815 TGAGTAGGATAATTCTTCTCATGAGGTTTTAACTGTCTCGAAGCATAAGCCACCACTTTTCCTTC
131 TGAGTAGGATAATTCTTCTCATGAGGTTTTAACTGTCTCGAAGCATAAGCCACCACTTTTCCTTC
120967880 TTGCATGAGTACACACCCCAAACCATTTAGAGAAGCATCACTATACACCA
196 TTGCATGAGTACACACCCCAAACCATTTAGAGAAGCATCACTATACACCA
120967930 CAAATTCAAGTCTTTTTGTGACATCAAGTATTTAAGACTTTTGTGATCGGTATATACTCGGCACT
1 CAAATTCAAGTCTTTTTGTGACATCAAGTATTTAAGACTTTTGTGATCGGTATATACTCGGCACT
120967995 TTTCACCATACAAATAATGTAGCCAAATCTTCAAAGCAAATACCACCGCAGCCAATTCCAAATCG
66 TTTCACCATACAAATAATGTAGCCAAATCTTCAAAGCAAATACCACCGCAGCCAATTCCAAATCG
*
120968060 TGAGTAGGATAATTCTTCTCATGAGGTTTTAACTGTCTCGAAGCATAAGCCACCACTTTTTCTTC
131 TGAGTAGGATAATTCTTCTCATGAGGTTTTAACTGTCTCGAAGCATAAGCCACCACTTTTCCTTC
120968125 TTGCATGAGTACACACCCCAAACCATTTAGAGAAGCATCACTATACACCA
196 TTGCATGAGTACACACCCCAAACCATTTAGAGAAGCATCACTATACACCA
120968175 CAAATTC
1 CAAATTC
120968182 TTTACCTGAT
Statistics
Matches: 250, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
245 250 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (245 bp):
CAAATTCAAGTCTTTTTGTGACATCAAGTATTTAAGACTTTTGTGATCGGTATATACTCGGCACT
TTTCACCATACAAATAATGTAGCCAAATCTTCAAAGCAAATACCACCGCAGCCAATTCCAAATCG
TGAGTAGGATAATTCTTCTCATGAGGTTTTAACTGTCTCGAAGCATAAGCCACCACTTTTCCTTC
TTGCATGAGTACACACCCCAAACCATTTAGAGAAGCATCACTATACACCA
Found at i:120972428 original size:93 final size:93
Alignment explanation
Indices: 120972316--120972487 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
120972306 CGCCCATAAG
* *
120972316 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
120972381 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
120972409 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
120972474 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
120972488 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:120972484 original size:46 final size:46
Alignment explanation
Indices: 120972309--120972484 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
120972299 TGTAACCCGC
* * *
120972309 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
120972355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
120972405 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
120972448 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
120972485 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:120973992 original size:11 final size:11
Alignment explanation
Indices: 120973976--120974000 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
120973966 TTATGGACAT
120973976 TCATTAAAGAA
1 TCATTAAAGAA
120973987 TCATTAAAGAA
1 TCATTAAAGAA
120973998 TCA
1 TCA
120974001 GAAGATTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (11 bp):
TCATTAAAGAA
Found at i:120977763 original size:13 final size:14
Alignment explanation
Indices: 120977747--120977782 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
120977737 CAATCTCATA
120977747 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
120977760 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
120977773 TCTC-ATTTCA
1 TCTCAATTTCA
120977783 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:120977765 original size:26 final size:25
Alignment explanation
Indices: 120977727--120977789 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
120977717 AACCTTTTGG
*
120977727 TTCATATTTTCAATCTC-ATATCTCAAT
1 TTCA-ATTCTCAAT-TCAATATCTC-AT
*
120977754 TTCAATTCTCAATTCAATTTCTCAT
1 TTCAATTCTCAATTCAATATCTCAT
120977779 TTC-ATTC-CAAT
1 TTCAATTCTCAAT
120977790 AGCTCAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 4 0.12
24 4 0.12
25 7 0.21
26 14 0.42
27 4 0.12
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.48
Consensus pattern (25 bp):
TTCAATTCTCAATTCAATATCTCAT
Done.